Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886140 | XP_013452015.1 | 71.341 | 328 | 65 | 3 | 1 | 299 | 1 | 328 | 5.48e-163 | 466 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886140 | sp|Q94BZ5|HSFA5_ARATH | 53.360 | 253 | 108 | 3 | 1 | 243 | 1 | 253 | 9.58e-85 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886140 | A0A072UAD0 | 71.341 | 328 | 65 | 3 | 1 | 299 | 1 | 328 | 2.62e-163 | 466 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886140 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886140 | MtrunA17_Chr6g0467041 | 71.341 | 328 | 65 | 3 | 1 | 299 | 1 | 328 | 5.04e-167 | 466 |
| Msa0886140 | MtrunA17_Chr8g0378061 | 75.540 | 278 | 25 | 2 | 23 | 257 | 23 | 300 | 4.51e-145 | 417 |
| Msa0886140 | MtrunA17_Chr8g0378061 | 86.364 | 44 | 6 | 0 | 257 | 300 | 414 | 457 | 4.32e-18 | 84.3 |
| Msa0886140 | MtrunA17_Chr2g0330821 | 53.094 | 307 | 119 | 8 | 1 | 298 | 60 | 350 | 4.51e-95 | 285 |
| Msa0886140 | MtrunA17_Chr2g0330841 | 52.941 | 238 | 62 | 4 | 64 | 257 | 29 | 260 | 2.28e-69 | 220 |
| Msa0886140 | MtrunA17_Chr5g0410881 | 49.763 | 211 | 92 | 4 | 22 | 218 | 32 | 242 | 6.95e-63 | 206 |
| Msa0886140 | MtrunA17_Chr8g0379701 | 49.038 | 208 | 94 | 4 | 15 | 216 | 5 | 206 | 3.10e-60 | 197 |
| Msa0886140 | MtrunA17_Chr4g0039891 | 43.541 | 209 | 106 | 3 | 20 | 216 | 10 | 218 | 2.60e-53 | 181 |
| Msa0886140 | MtrunA17_Chr7g0260331 | 45.673 | 208 | 101 | 5 | 19 | 215 | 46 | 252 | 2.80e-50 | 170 |
| Msa0886140 | MtrunA17_Chr1g0204741 | 42.601 | 223 | 111 | 6 | 7 | 215 | 20 | 239 | 2.93e-50 | 169 |
| Msa0886140 | MtrunA17_Chr3g0135831 | 43.204 | 206 | 107 | 5 | 19 | 217 | 43 | 245 | 2.62e-49 | 167 |
| Msa0886140 | MtrunA17_Chr1g0185131 | 39.367 | 221 | 114 | 4 | 22 | 233 | 32 | 241 | 5.23e-46 | 158 |
| Msa0886140 | MtrunA17_Chr3g0134031 | 65.686 | 102 | 35 | 0 | 12 | 113 | 14 | 115 | 3.92e-45 | 157 |
| Msa0886140 | MtrunA17_Chr4g0071051 | 43.548 | 186 | 101 | 2 | 19 | 203 | 98 | 280 | 5.13e-45 | 157 |
| Msa0886140 | MtrunA17_Chr8g0392001 | 47.179 | 195 | 90 | 6 | 20 | 201 | 20 | 214 | 2.33e-44 | 154 |
| Msa0886140 | MtrunA17_Chr5g0402291 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 5.97e-43 | 149 |
| Msa0886140 | MtrunA17_Chr5g0441531 | 67.742 | 93 | 30 | 0 | 21 | 113 | 24 | 116 | 3.58e-42 | 145 |
| Msa0886140 | MtrunA17_Chr5g0397881 | 58.333 | 108 | 45 | 0 | 6 | 113 | 8 | 115 | 1.50e-41 | 147 |
| Msa0886140 | MtrunA17_Chr6g0485571 | 40.196 | 204 | 115 | 2 | 20 | 219 | 9 | 209 | 3.56e-41 | 145 |
| Msa0886140 | MtrunA17_Chr2g0284481 | 57.407 | 108 | 46 | 0 | 12 | 119 | 5 | 112 | 1.34e-40 | 145 |
| Msa0886140 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 21 | 113 | 32 | 124 | 9.46e-39 | 139 |
| Msa0886140 | MtrunA17_Chr7g0257331 | 60.215 | 93 | 37 | 0 | 21 | 113 | 21 | 113 | 1.29e-38 | 136 |
| Msa0886140 | MtrunA17_Chr1g0203601 | 61.053 | 95 | 37 | 0 | 21 | 115 | 17 | 111 | 5.68e-38 | 136 |
| Msa0886140 | MtrunA17_Chr4g0047421 | 56.701 | 97 | 38 | 1 | 21 | 113 | 32 | 128 | 2.85e-34 | 124 |
| Msa0886140 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 21 | 113 | 8 | 100 | 6.06e-33 | 122 |
| Msa0886140 | MtrunA17_Chr1g0179321 | 64.516 | 62 | 22 | 0 | 20 | 81 | 47 | 108 | 6.17e-25 | 96.7 |
| Msa0886140 | MtrunA17_Chr4g0023771 | 59.420 | 69 | 27 | 1 | 12 | 79 | 4 | 72 | 2.20e-20 | 84.3 |
| Msa0886140 | MtrunA17_Chr1g0179311 | 27.979 | 193 | 116 | 6 | 61 | 243 | 1 | 180 | 1.25e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886140 | AT4G13980.1 | 53.360 | 253 | 108 | 3 | 1 | 243 | 1 | 253 | 9.74e-86 | 265 |
| Msa0886140 | AT4G17750.1 | 47.685 | 216 | 92 | 4 | 22 | 216 | 52 | 267 | 3.53e-58 | 194 |
| Msa0886140 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 5.40e-58 | 193 |
| Msa0886140 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 5.40e-58 | 193 |
| Msa0886140 | AT3G02990.1 | 42.918 | 233 | 120 | 4 | 8 | 228 | 9 | 240 | 9.63e-58 | 192 |
| Msa0886140 | AT1G32330.1 | 45.532 | 235 | 109 | 5 | 1 | 216 | 16 | 250 | 9.66e-58 | 193 |
| Msa0886140 | AT1G32330.2 | 45.532 | 235 | 109 | 5 | 1 | 216 | 16 | 250 | 9.76e-58 | 192 |
| Msa0886140 | AT5G45710.3 | 38.413 | 315 | 156 | 9 | 14 | 299 | 5 | 310 | 2.81e-54 | 180 |
| Msa0886140 | AT5G45710.1 | 38.413 | 315 | 156 | 9 | 14 | 299 | 5 | 310 | 2.81e-54 | 180 |
| Msa0886140 | AT4G18880.1 | 48.131 | 214 | 95 | 4 | 16 | 220 | 9 | 215 | 1.27e-52 | 177 |
| Msa0886140 | AT2G26150.1 | 42.342 | 222 | 120 | 4 | 19 | 232 | 41 | 262 | 3.53e-50 | 169 |
| Msa0886140 | AT2G26150.4 | 42.342 | 222 | 120 | 4 | 19 | 232 | 41 | 262 | 3.53e-50 | 169 |
| Msa0886140 | AT3G22830.1 | 40.278 | 216 | 116 | 3 | 19 | 221 | 58 | 273 | 1.67e-47 | 164 |
| Msa0886140 | AT3G51910.1 | 41.706 | 211 | 106 | 5 | 22 | 226 | 29 | 228 | 5.92e-47 | 159 |
| Msa0886140 | AT5G03720.2 | 41.346 | 208 | 118 | 3 | 20 | 223 | 53 | 260 | 5.82e-46 | 160 |
| Msa0886140 | AT5G03720.1 | 41.346 | 208 | 118 | 3 | 20 | 223 | 53 | 260 | 5.82e-46 | 160 |
| Msa0886140 | AT3G24520.1 | 42.079 | 202 | 94 | 4 | 20 | 217 | 15 | 197 | 3.98e-45 | 156 |
| Msa0886140 | AT1G46264.1 | 61.607 | 112 | 33 | 1 | 21 | 122 | 33 | 144 | 2.05e-44 | 154 |
| Msa0886140 | AT1G67970.1 | 45.128 | 195 | 94 | 5 | 20 | 204 | 17 | 208 | 5.64e-44 | 154 |
| Msa0886140 | AT5G43840.1 | 42.690 | 171 | 87 | 2 | 21 | 190 | 18 | 178 | 7.77e-41 | 143 |
| Msa0886140 | AT5G54070.1 | 42.703 | 185 | 100 | 2 | 20 | 203 | 69 | 248 | 2.09e-40 | 144 |
| Msa0886140 | AT3G63350.1 | 31.449 | 283 | 160 | 8 | 19 | 297 | 25 | 277 | 1.36e-39 | 140 |
| Msa0886140 | AT4G11660.1 | 62.000 | 100 | 38 | 0 | 14 | 113 | 51 | 150 | 4.44e-39 | 141 |
| Msa0886140 | AT5G62020.1 | 51.261 | 119 | 57 | 1 | 1 | 118 | 1 | 119 | 2.57e-38 | 137 |
| Msa0886140 | AT4G36990.1 | 45.455 | 176 | 61 | 4 | 8 | 151 | 2 | 174 | 3.77e-38 | 136 |
| Msa0886140 | AT2G41690.1 | 53.043 | 115 | 54 | 0 | 22 | 136 | 40 | 154 | 6.26e-38 | 135 |
| Msa0886140 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 22 | 109 | 146 | 233 | 4.81e-23 | 96.7 |
| Msa0886140 | AT4G18870.1 | 46.875 | 96 | 50 | 1 | 14 | 109 | 5 | 99 | 9.03e-23 | 95.9 |
| Msa0886140 | AT1G77570.1 | 43.478 | 92 | 48 | 3 | 19 | 106 | 22 | 113 | 3.95e-17 | 77.0 |
| Msa0886140 | AT2G26150.3 | 32.020 | 203 | 123 | 6 | 40 | 232 | 10 | 207 | 1.56e-15 | 75.9 |
| Msa0886140 | AT2G26150.2 | 32.020 | 203 | 123 | 6 | 40 | 232 | 10 | 207 | 1.56e-15 | 75.9 |
| Msa0886140 | AT4G19630.1 | 35.052 | 97 | 60 | 1 | 19 | 112 | 8 | 104 | 2.02e-13 | 66.6 |
| Msa0886140 | AT5G45710.4 | 30.045 | 223 | 118 | 10 | 106 | 299 | 1 | 214 | 2.41e-12 | 66.2 |
| Msa0886140 | AT5G45710.2 | 30.045 | 223 | 118 | 10 | 106 | 299 | 1 | 214 | 2.41e-12 | 66.2 |
Find 71 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_1:+44325929 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_1:+44325865 | None:intergenic |
| CAAAATCAAATCCATGGATT+TGG | 0.313501 | 6_1:-44325711 | Msa0886140:CDS |
| CCACAGATGAGATCATTTCT+TGG | 0.343190 | 6_1:-44330623 | Msa0886140:CDS |
| ACGGAGTGAATGATGTGTTT+TGG | 0.356521 | 6_1:-44325490 | Msa0886140:CDS |
| CTTCTTTGAGAAGGCTCTAC+AGG | 0.360916 | 6_1:-44325762 | Msa0886140:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_1:-44330593 | Msa0886140:CDS |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_1:+44330564 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_1:+44325536 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_1:-44325678 | Msa0886140:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 6_1:+44325641 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.419735 | 6_1:+44325873 | None:intergenic |
| TTGCTGTGTTTGAAATATGT+TGG | 0.421946 | 6_1:+44330540 | None:intergenic |
| TGCTGTGTTTGAAATATGTT+GGG | 0.444516 | 6_1:+44330541 | None:intergenic |
| TATCAAGATAATTATAGCTT+AGG | 0.451761 | 6_1:+44325858 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_1:-44325691 | Msa0886140:CDS |
| TCTGCTTCCGTCGGCAGCAG+TGG | 0.466428 | 6_1:+44330698 | None:intergenic |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_1:-44325966 | Msa0886140:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_1:+44325513 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.473073 | 6_1:-44325642 | Msa0886140:CDS |
| GAAAGCAGATCCTGATCGTT+GGG | 0.475772 | 6_1:-44326059 | Msa0886140:CDS |
| TTCCCTCAAAATCAAATCCA+TGG | 0.478136 | 6_1:-44325717 | Msa0886140:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_1:+44326049 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.480417 | 6_1:+44325874 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_1:+44325700 | None:intergenic |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.482903 | 6_1:-44325542 | Msa0886140:CDS |
| GAAGCCTCCTTTGGATCAGC+GGG | 0.484852 | 6_1:+44325545 | None:intergenic |
| TTTGCAAAACTTCTTTGAGA+AGG | 0.487416 | 6_1:-44325771 | Msa0886140:CDS |
| CTTTCTGAAGGAGAACTGAC+AGG | 0.491976 | 6_1:-44325587 | Msa0886140:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_1:-44325933 | Msa0886140:CDS |
| TGATACAGAAAAGCTTCAGC+TGG | 0.497298 | 6_1:-44325840 | Msa0886140:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_1:-44330688 | Msa0886140:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_1:+44330512 | None:intergenic |
| TTCTCTCAGAATCTTTCTGA+AGG | 0.510971 | 6_1:-44325599 | Msa0886140:CDS |
| TCAGCGGCAATTGGATGGCA+TGG | 0.513464 | 6_1:-44325810 | Msa0886140:CDS |
| TCATATGTCTTCTGAAGAAA+CGG | 0.516273 | 6_1:+44330663 | None:intergenic |
| AACTGACCCCGCTGATCCAA+AGG | 0.526560 | 6_1:-44325552 | Msa0886140:CDS |
| GAGAGAAAACATTGCTAGGA+AGG | 0.540423 | 6_1:+44325615 | None:intergenic |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6_1:+44325459 | None:intergenic |
| GGAAAGCAGATCCTGATCGT+TGG | 0.545857 | 6_1:-44326060 | Msa0886140:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_1:-44325509 | Msa0886140:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_1:-44325514 | Msa0886140:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_1:+44325966 | None:intergenic |
| AAGGTCGACCAAGCTACCTT+CGG | 0.554405 | 6_1:+44325634 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_1:-44325965 | Msa0886140:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 6_1:-44325942 | Msa0886140:CDS |
| AGAAATGATCTCATCTGTGG+TGG | 0.567159 | 6_1:+44330626 | None:intergenic |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 6_1:-44325943 | Msa0886140:CDS |
| TTCTGAGAGAAAACATTGCT+AGG | 0.570976 | 6_1:+44325611 | None:intergenic |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_1:+44325981 | None:intergenic |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.581055 | 6_1:-44330693 | Msa0886140:CDS |
| TGAAGCCTCCTTTGGATCAG+CGG | 0.591974 | 6_1:+44325544 | None:intergenic |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_1:-44325650 | Msa0886140:CDS |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_1:+44330502 | None:intergenic |
| AATTGGATGGCATGGAGAAG+AGG | 0.602743 | 6_1:-44325802 | Msa0886140:CDS |
| TCATCAGCCACTGCTGCCGA+CGG | 0.606067 | 6_1:-44330705 | Msa0886140:CDS |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6_1:+44325947 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_1:+44325971 | None:intergenic |
| TCTTCATTGTCTGAACAGCA+TGG | 0.622573 | 6_1:+44325446 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_1:+44330689 | None:intergenic |
| GAAATGATCTCATCTGTGGT+GGG | 0.624254 | 6_1:+44330627 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_1:+44330567 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_1:-44325444 | Msa0886140:CDS |
| TTTCTGAAGGAGAACTGACA+GGG | 0.656485 | 6_1:-44325586 | Msa0886140:CDS |
| CCAAGAAATGATCTCATCTG+TGG | 0.658293 | 6_1:+44330623 | None:intergenic |
| TGACCCCGCTGATCCAAAGG+AGG | 0.662370 | 6_1:-44325549 | Msa0886140:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_1:+44330568 | None:intergenic |
| TCTTCAGAAGACATATGACA+TGG | 0.665030 | 6_1:-44330658 | Msa0886140:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6_1:+44330714 | None:intergenic |
| AAGCCTCCTTTGGATCAGCG+GGG | 0.731334 | 6_1:+44325546 | None:intergenic |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6_1:+44325950 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATAAAATATTTATTTT+GGG | + | chr6_1:44327803-44327822 | None:intergenic | 0.0% |
| !!! | TATTTATAAAATATTTATTT+TGG | + | chr6_1:44327804-44327823 | None:intergenic | 0.0% |
| !!! | AATATTTTTCAAAAACTAAT+CGG | - | chr6_1:44328267-44328286 | Msa0886140:intron | 10.0% |
| !! | ATATTCTTGTAAAAATTTAA+TGG | - | chr6_1:44329938-44329957 | Msa0886140:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44330129-44330148 | None:intergenic | 10.0% |
| !!! | ACATTTTATAAAACAATACT+AGG | - | chr6_1:44326250-44326269 | Msa0886140:intron | 15.0% |
| !!! | TATTTTTACTTCTTTTGTTT+GGG | + | chr6_1:44326367-44326386 | None:intergenic | 15.0% |
| !!! | ATGATTTGTGAATAAATATA+TGG | + | chr6_1:44327182-44327201 | None:intergenic | 15.0% |
| !!! | TAGATATTTTGTTAACTTTA+TGG | + | chr6_1:44327635-44327654 | None:intergenic | 15.0% |
| !! | TAAAGTTAACAAAATATCTA+AGG | - | chr6_1:44327635-44327654 | Msa0886140:intron | 15.0% |
| !!! | AATATCTAAGATATTTTGAT+AGG | + | chr6_1:44328961-44328980 | None:intergenic | 15.0% |
| !! | TTTAGCTATAACTAAATTTA+GGG | + | chr6_1:44329115-44329134 | None:intergenic | 15.0% |
| !! | ATTTAGCTATAACTAAATTT+AGG | + | chr6_1:44329116-44329135 | None:intergenic | 15.0% |
| !! | ATTTAGTTATAGCTAAATTA+CGG | - | chr6_1:44329118-44329137 | Msa0886140:intron | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | + | chr6_1:44329401-44329420 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTAATTTGTTA+TGG | - | chr6_1:44330041-44330060 | Msa0886140:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44325769-44325788 | Msa0886140:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44325875-44325894 | Msa0886140:CDS | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | - | chr6_1:44325915-44325934 | Msa0886140:CDS | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | + | chr6_1:44326069-44326088 | None:intergenic | 20.0% |
| !!! | GTATTTTTACTTCTTTTGTT+TGG | + | chr6_1:44326368-44326387 | None:intergenic | 20.0% |
| !! | CATAATTACAAAAATACTGA+AGG | - | chr6_1:44326594-44326613 | Msa0886140:intron | 20.0% |
| !!! | TAAGACTTAAAGTATTTTCA+AGG | + | chr6_1:44327606-44327625 | None:intergenic | 20.0% |
| !! | AAAGTGATATATTATTCAGT+CGG | + | chr6_1:44327768-44327787 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGGTGATTTTA+AGG | + | chr6_1:44327792-44327811 | None:intergenic | 20.0% |
| !!! | AGTTTTTGAAAAATATTGTC+TGG | + | chr6_1:44328264-44328283 | None:intergenic | 20.0% |
| !! | TCTAAAAGAAAATTTACGAT+CGG | + | chr6_1:44328384-44328403 | None:intergenic | 20.0% |
| !!! | ATATAAAGAGATAATGGTTT+TGG | + | chr6_1:44328469-44328488 | None:intergenic | 20.0% |
| !! | TGATACATATAAAGAGATAA+TGG | + | chr6_1:44328475-44328494 | None:intergenic | 20.0% |
| !! | TTCAACACAACTAAAATTAA+TGG | - | chr6_1:44328534-44328553 | Msa0886140:intron | 20.0% |
| !! | TTTAGTTATAGCTAAATTAC+GGG | - | chr6_1:44329119-44329138 | Msa0886140:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | - | chr6_1:44329542-44329561 | Msa0886140:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | - | chr6_1:44329543-44329562 | Msa0886140:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | + | chr6_1:44329630-44329649 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | + | chr6_1:44329650-44329669 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | - | chr6_1:44329649-44329668 | Msa0886140:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | + | chr6_1:44329697-44329716 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | + | chr6_1:44329698-44329717 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | + | chr6_1:44329736-44329755 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | + | chr6_1:44329737-44329756 | None:intergenic | 20.0% |
| !! | GTATTCTTGTAAAGATTTAA+TGG | - | chr6_1:44329960-44329979 | Msa0886140:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | - | chr6_1:44330067-44330086 | Msa0886140:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | - | chr6_1:44330068-44330087 | Msa0886140:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | + | chr6_1:44330301-44330320 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44330465-44330484 | Msa0886140:intron | 20.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44325892-44325911 | Msa0886140:CDS | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | - | chr6_1:44325978-44325997 | Msa0886140:CDS | 25.0% |
| !!! | TTTGATTCAAGTTGTATTGT+TGG | + | chr6_1:44326226-44326245 | None:intergenic | 25.0% |
| ! | CCTAAGTTATTGTATATGTT+AGG | + | chr6_1:44327455-44327474 | None:intergenic | 25.0% |
| ! | CCTAACATATACAATAACTT+AGG | - | chr6_1:44327452-44327471 | Msa0886140:intron | 25.0% |
| !!! | ATGTTTTGAGAAGATAAACA+GGG | + | chr6_1:44327691-44327710 | None:intergenic | 25.0% |
| !!! | AATGTTTTGAGAAGATAAAC+AGG | + | chr6_1:44327692-44327711 | None:intergenic | 25.0% |
| ! | AAGTGATATATTATTCAGTC+GGG | + | chr6_1:44327767-44327786 | None:intergenic | 25.0% |
| !!! | TGATCTTTTAAGATTTCTTG+AGG | + | chr6_1:44327835-44327854 | None:intergenic | 25.0% |
| ! | TTCGAAAAGATGTTTCAAAA+TGG | + | chr6_1:44327879-44327898 | None:intergenic | 25.0% |
| !!! | CATTTTATCATAGTTTTGAG+TGG | + | chr6_1:44327903-44327922 | None:intergenic | 25.0% |
| ! | ATACTGTTGAAAAGTGAAAT+AGG | + | chr6_1:44328200-44328219 | None:intergenic | 25.0% |
| !! | GCTCATTTCTTTTATTAATG+TGG | + | chr6_1:44328432-44328451 | None:intergenic | 25.0% |
| ! | ATCTCTTTATATGTATCACA+CGG | - | chr6_1:44328477-44328496 | Msa0886140:intron | 25.0% |
| ! | AGGAAGATAAAATTTAGTCA+TGG | - | chr6_1:44328819-44328838 | Msa0886140:intron | 25.0% |
| ! | TGTCTTACTATTTGATCAAA+TGG | + | chr6_1:44328881-44328900 | None:intergenic | 25.0% |
| ! | ATGAATTTCACGGTAAATAT+AGG | - | chr6_1:44329051-44329070 | Msa0886140:intron | 25.0% |
| ! | CTTACAATAATCATATGTGT+CGG | - | chr6_1:44329143-44329162 | Msa0886140:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44329849-44329868 | Msa0886140:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | + | chr6_1:44329913-44329932 | None:intergenic | 25.0% |
| ! | AAATAAGTTTGCAGTTCTTA+TGG | - | chr6_1:44329993-44330012 | Msa0886140:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44330294-44330313 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44330459-44330478 | None:intergenic | 25.0% |
| ! | TCATATGTCTTCTGAAGAAA+CGG | + | chr6_1:44325496-44325515 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44325563-44325582 | Msa0886140:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | + | chr6_1:44325618-44325637 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | + | chr6_1:44325619-44325638 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44325671-44325690 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44325803-44325822 | Msa0886140:CDS | 30.0% | |
| !!! | TGCACTCTTGTTTTGAAAAT+CGG | + | chr6_1:44326104-44326123 | None:intergenic | 30.0% |
| ! | ATCCTAAATCTTTTAGTGCA+TGG | + | chr6_1:44326156-44326175 | None:intergenic | 30.0% |
| TTTACATTAATTCGTGGATC+GGG | + | chr6_1:44326554-44326573 | None:intergenic | 30.0% | |
| CTTTACATTAATTCGTGGAT+CGG | + | chr6_1:44326555-44326574 | None:intergenic | 30.0% | |
| GATCCACGAATTAATGTAAA+GGG | - | chr6_1:44326554-44326573 | Msa0886140:intron | 30.0% | |
| ! | GCATCATTATATTTTGTGTG+AGG | + | chr6_1:44326661-44326680 | None:intergenic | 30.0% |
| TATGTGGCGATATTCAATTT+CGG | + | chr6_1:44326755-44326774 | None:intergenic | 30.0% | |
| ATTTGAATGTAACACCTCTA+TGG | + | chr6_1:44326868-44326887 | None:intergenic | 30.0% | |
| AACTTTGAATATCACCACAA+AGG | - | chr6_1:44326895-44326914 | Msa0886140:intron | 30.0% | |
| ATTTGAATGTAACACCTCTA+TGG | + | chr6_1:44326868-44326887 | None:intergenic | 30.0% | |
| TGTTACATTCAAATGACTCT+AGG | - | chr6_1:44326789-44326808 | Msa0886140:intron | 30.0% | |
| ATTTGAATGTAACACCTCTA+TGG | + | chr6_1:44326868-44326887 | None:intergenic | 30.0% | |
| TGTTACATTCAAATGACTCT+AGG | - | chr6_1:44326789-44326808 | Msa0886140:intron | 30.0% | |
| TAGTTACTTAAATGTCTGGA+TGG | + | chr6_1:44327320-44327339 | None:intergenic | 30.0% | |
| TCCAGACATTTAAGTAACTA+TGG | - | chr6_1:44327320-44327339 | Msa0886140:intron | 30.0% | |
| TCCATAGTTACTTAAATGTC+TGG | + | chr6_1:44327324-44327343 | None:intergenic | 30.0% | |
| TTGTAGAGCTGTACATTATA+AGG | + | chr6_1:44327383-44327402 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAGAAGATAAACAG+GGG | + | chr6_1:44327690-44327709 | None:intergenic | 30.0% |
| AGTGATATATTATTCAGTCG+GGG | + | chr6_1:44327766-44327785 | None:intergenic | 30.0% | |
| TGGGAATAAAACTTGAAGTA+AGG | + | chr6_1:44328664-44328683 | None:intergenic | 30.0% | |
| TTAATCTTAGTTAAGGTGCA+AGG | + | chr6_1:44328721-44328740 | None:intergenic | 30.0% | |
| GTGGTGATTAATCTTAGTTA+AGG | + | chr6_1:44328728-44328747 | None:intergenic | 30.0% | |
| TCATGGAACTTGTCTTAAAT+AGG | - | chr6_1:44328836-44328855 | Msa0886140:intron | 30.0% | |
| TACTATTTGATCAAATGGCT+AGG | + | chr6_1:44328876-44328895 | None:intergenic | 30.0% | |
| TGATCAAATAGTAAGACATG+TGG | - | chr6_1:44328883-44328902 | Msa0886140:intron | 30.0% | |
| GATCAAATAGTAAGACATGT+GGG | - | chr6_1:44328884-44328903 | Msa0886140:intron | 30.0% | |
| TAATTTAACGCGTCTAATCT+CGG | - | chr6_1:44329022-44329041 | Msa0886140:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | + | chr6_1:44329211-44329230 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | - | chr6_1:44329212-44329231 | Msa0886140:intron | 30.0% |
| !! | TATGTCTTAATTTTCGGTGT+GGG | - | chr6_1:44329218-44329237 | Msa0886140:intron | 30.0% |
| ! | AAGAATATTTCTACAGCATC+TGG | - | chr6_1:44329294-44329313 | Msa0886140:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44329368-44329387 | Msa0886140:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44329390-44329409 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | - | chr6_1:44329547-44329566 | Msa0886140:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | - | chr6_1:44329548-44329567 | Msa0886140:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | + | chr6_1:44329596-44329615 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | + | chr6_1:44329597-44329616 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | + | chr6_1:44329730-44329749 | None:intergenic | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | - | chr6_1:44329868-44329887 | Msa0886140:intron | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | - | chr6_1:44330075-44330094 | Msa0886140:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44330145-44330164 | Msa0886140:intron | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | - | chr6_1:44330385-44330404 | Msa0886140:intron | 30.0% |
| !! | ATCCATGGATTTGATTTTGA+GGG | + | chr6_1:44330444-44330463 | None:intergenic | 30.0% |
| !! | AATCCATGGATTTGATTTTG+AGG | + | chr6_1:44330445-44330464 | None:intergenic | 30.0% |
| CAAAATCAAATCCATGGATT+TGG | - | chr6_1:44330445-44330464 | Msa0886140:intron | 30.0% | |
| TCTTCAGAAGACATATGACA+TGG | - | chr6_1:44325498-44325517 | Msa0886140:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | + | chr6_1:44325657-44325676 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | - | chr6_1:44325954-44325973 | Msa0886140:CDS | 35.0% | |
| !!! | GCACTCTTGTTTTGAAAATC+GGG | + | chr6_1:44326103-44326122 | None:intergenic | 35.0% |
| TGCCATGCACTAAAAGATTT+AGG | - | chr6_1:44326151-44326170 | Msa0886140:intron | 35.0% | |
| GTTTGAGTATTCATTTCCCA+TGG | - | chr6_1:44326321-44326340 | Msa0886140:intron | 35.0% | |
| GCTGTAAATGATACTACCAT+GGG | + | chr6_1:44326340-44326359 | None:intergenic | 35.0% | |
| CATGGTAGTATCATTTACAG+CGG | - | chr6_1:44326339-44326358 | Msa0886140:intron | 35.0% | |
| ! | CAGCTTAGATGTTTTACTTG+TGG | + | chr6_1:44326405-44326424 | None:intergenic | 35.0% |
| ! | AAATAGGGAGTTTTCTTTGC+GGG | + | chr6_1:44326516-44326535 | None:intergenic | 35.0% |
| ! | CAAATAGGGAGTTTTCTTTG+CGG | + | chr6_1:44326517-44326536 | None:intergenic | 35.0% |
| AAAACTCCCTATTTGGATGT+GGG | - | chr6_1:44326522-44326541 | Msa0886140:intron | 35.0% | |
| CGATCCACGAATTAATGTAA+AGG | - | chr6_1:44326553-44326572 | Msa0886140:intron | 35.0% | |
| TGACCCTTTACATTAATTCG+TGG | + | chr6_1:44326560-44326579 | None:intergenic | 35.0% | |
| GTATTAAGTCTGCATTTGCT+AGG | + | chr6_1:44326692-44326711 | None:intergenic | 35.0% | |
| GAAATTGAATATCGCCACAT+AGG | - | chr6_1:44326754-44326773 | Msa0886140:intron | 35.0% | |
| AGGATTGAATATCACCACAA+AGG | - | chr6_1:44326979-44326998 | Msa0886140:intron | 35.0% | |
| AGGATTGAATATCACCACAA+AGG | - | chr6_1:44326979-44326998 | Msa0886140:intron | 35.0% | |
| ATTGCAAACAAATCCCACAT+TGG | - | chr6_1:44327240-44327259 | Msa0886140:intron | 35.0% | |
| TTGCAAACAAATCCCACATT+GGG | - | chr6_1:44327241-44327260 | Msa0886140:intron | 35.0% | |
| TTATAAGGAATGCTTTGCTC+AGG | + | chr6_1:44327368-44327387 | None:intergenic | 35.0% | |
| !! | TGTATTTTCGAGAGTTGCTA+AGG | + | chr6_1:44327519-44327538 | None:intergenic | 35.0% |
| !!! | TTTTGAGACGAATGTCATGT+TGG | + | chr6_1:44327582-44327601 | None:intergenic | 35.0% |
| ! | AAGTGAAATAGGTTGACCAA+TGG | + | chr6_1:44328189-44328208 | None:intergenic | 35.0% |
| !!! | TGTATCACACGGTTTTGAAA+AGG | - | chr6_1:44328488-44328507 | Msa0886140:intron | 35.0% |
| GGCTGAAATGGAAAAGAAAA+AGG | - | chr6_1:44328634-44328653 | Msa0886140:intron | 35.0% | |
| !! | GTTAGAAGATTAGCTTGCTT+GGG | + | chr6_1:44328683-44328702 | None:intergenic | 35.0% |
| !! | AGTTAGAAGATTAGCTTGCT+TGG | + | chr6_1:44328684-44328703 | None:intergenic | 35.0% |
| ! | AAGAAGAGAAATGACGGAAA+TGG | - | chr6_1:44328756-44328775 | Msa0886140:intron | 35.0% |
| !!! | GGTTCACGTTTTATTTCAAG+AGG | - | chr6_1:44328795-44328814 | Msa0886140:intron | 35.0% |
| !! | ATGGCTAGGATTATTTTGTG+TGG | + | chr6_1:44328862-44328881 | None:intergenic | 35.0% |
| CGCGTTAAATTAGAAACATG+AGG | + | chr6_1:44329014-44329033 | None:intergenic | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | - | chr6_1:44329149-44329168 | Msa0886140:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | - | chr6_1:44329217-44329236 | Msa0886140:intron | 35.0% |
| TGACGCATTTCATATACTTC+AGG | + | chr6_1:44329430-44329449 | None:intergenic | 35.0% | |
| AGACACATCATGACTAACAT+GGG | + | chr6_1:44329606-44329625 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44329901-44329920 | None:intergenic | 35.0% | |
| TTCCCTCAAAATCAAATCCA+TGG | - | chr6_1:44330439-44330458 | Msa0886140:intron | 35.0% | |
| ! | TTCTGAGAGAAAACATTGCT+AGG | + | chr6_1:44330548-44330567 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | - | chr6_1:44330557-44330576 | Msa0886140:CDS | 35.0% | |
| GAAATGATCTCATCTGTGGT+GGG | + | chr6_1:44325532-44325551 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | + | chr6_1:44325533-44325552 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | + | chr6_1:44325536-44325555 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | - | chr6_1:44325533-44325552 | Msa0886140:CDS | 40.0% | |
| CGCTGTAAATGATACTACCA+TGG | + | chr6_1:44326341-44326360 | None:intergenic | 40.0% | |
| CTGATCCTTAACTCTGAACT+GGG | - | chr6_1:44326422-44326441 | Msa0886140:intron | 40.0% | |
| TTTCTTTGCGGGAATAGCAA+AGG | + | chr6_1:44326505-44326524 | None:intergenic | 40.0% | |
| CGCAAAGAAAACTCCCTATT+TGG | - | chr6_1:44326515-44326534 | Msa0886140:intron | 40.0% | |
| GAAAACTCCCTATTTGGATG+TGG | - | chr6_1:44326521-44326540 | Msa0886140:intron | 40.0% | |
| AAACTCCCTATTTGGATGTG+GGG | - | chr6_1:44326523-44326542 | Msa0886140:intron | 40.0% | |
| ! | GAAGGCATAACATACTAGCA+TGG | - | chr6_1:44326612-44326631 | Msa0886140:intron | 40.0% |
| TACGAGTATGACACCTATCA+CGG | - | chr6_1:44326709-44326728 | Msa0886140:intron | 40.0% | |
| ATTTGAATGTAACACCCCTG+TGG | + | chr6_1:44326783-44326802 | None:intergenic | 40.0% | |
| GACTTTGAATACCACCACAA+AGG | - | chr6_1:44326810-44326829 | Msa0886140:intron | 40.0% | |
| TTGTGGTGATAACACCTTAG+TGG | + | chr6_1:44326839-44326858 | None:intergenic | 40.0% | |
| TGAATGTAACACCTCTATGG+TGG | + | chr6_1:44326865-44326884 | None:intergenic | 40.0% | |
| TTGTGGTGATAACACCTTAG+TGG | + | chr6_1:44326839-44326858 | None:intergenic | 40.0% | |
| ! | CTAAGGTGTTATCACCACAA+AGG | - | chr6_1:44326839-44326858 | Msa0886140:intron | 40.0% |
| TGAATGTAACACCTCTATGG+TGG | + | chr6_1:44326865-44326884 | None:intergenic | 40.0% | |
| TTGTGGTGATAACACCTTAG+TGG | + | chr6_1:44326839-44326858 | None:intergenic | 40.0% | |
| ! | CTAAGGTGTTATCACCACAA+AGG | - | chr6_1:44326839-44326858 | Msa0886140:intron | 40.0% |
| TGAATGTAACACCTCTATGG+TGG | + | chr6_1:44326865-44326884 | None:intergenic | 40.0% | |
| TGAATGTGTTTGCCCAATGT+GGG | + | chr6_1:44327256-44327275 | None:intergenic | 40.0% | |
| AACTCGTAAGCATCTACATC+AGG | - | chr6_1:44327401-44327420 | Msa0886140:intron | 40.0% | |
| TGTTAGGATACTTAGCTCGA+GGG | + | chr6_1:44327439-44327458 | None:intergenic | 40.0% | |
| ATGTTAGGATACTTAGCTCG+AGG | + | chr6_1:44327440-44327459 | None:intergenic | 40.0% | |
| TAAAGCTTCCTACCCATTCT+AGG | - | chr6_1:44327488-44327507 | Msa0886140:intron | 40.0% | |
| GCTAAGGTTTCACCTAGAAT+GGG | + | chr6_1:44327503-44327522 | None:intergenic | 40.0% | |
| TGCTAAGGTTTCACCTAGAA+TGG | + | chr6_1:44327504-44327523 | None:intergenic | 40.0% | |
| GGTATGCGATGTAAACACAA+AGG | + | chr6_1:44327952-44327971 | None:intergenic | 40.0% | |
| GCTTTCTATGTAACTGACTG+CGG | + | chr6_1:44328071-44328090 | None:intergenic | 40.0% | |
| GAAAAGACTGAACTGTTCAG+GGG | + | chr6_1:44328239-44328258 | None:intergenic | 40.0% | |
| CGAAAAGACTGAACTGTTCA+GGG | + | chr6_1:44328240-44328259 | None:intergenic | 40.0% | |
| ACGAAAAGACTGAACTGTTC+AGG | + | chr6_1:44328241-44328260 | None:intergenic | 40.0% | |
| GAGAGGAAGAAGAGAAATGA+CGG | - | chr6_1:44328750-44328769 | Msa0886140:intron | 40.0% | |
| AAATGGAGTTCCAAGAGGAA+GGG | - | chr6_1:44328773-44328792 | Msa0886140:intron | 40.0% | |
| !!! | CACGTTTTATTTCAAGAGGC+AGG | - | chr6_1:44328799-44328818 | Msa0886140:intron | 40.0% |
| TCGGTCATGGATGAATTTCA+CGG | - | chr6_1:44329041-44329060 | Msa0886140:intron | 40.0% | |
| TTTCTACAGCATCTGGATCT+TGG | - | chr6_1:44329301-44329320 | Msa0886140:intron | 40.0% | |
| ! | GTAGGGACTAAGTTTGAGAT+AGG | - | chr6_1:44329565-44329584 | Msa0886140:intron | 40.0% |
| CAGACACATCATGACTAACA+TGG | + | chr6_1:44329607-44329626 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | - | chr6_1:44329660-44329679 | Msa0886140:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | - | chr6_1:44329661-44329680 | Msa0886140:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | + | chr6_1:44329715-44329734 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | + | chr6_1:44329757-44329776 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | - | chr6_1:44330214-44330233 | Msa0886140:intron | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | + | chr6_1:44330285-44330304 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | + | chr6_1:44330286-44330305 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | - | chr6_1:44330316-44330335 | Msa0886140:intron | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | chr6_1:44330330-44330349 | Msa0886140:intron | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44330478-44330497 | Msa0886140:intron | 40.0% | |
| GAGAGAAAACATTGCTAGGA+AGG | + | chr6_1:44330544-44330563 | None:intergenic | 40.0% | |
| ! | TTTCTGAAGGAGAACTGACA+GGG | - | chr6_1:44330570-44330589 | Msa0886140:CDS | 40.0% |
| ! | ACGGAGTGAATGATGTGTTT+TGG | - | chr6_1:44330666-44330685 | Msa0886140:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | - | chr6_1:44330667-44330686 | Msa0886140:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | + | chr6_1:44330700-44330719 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | chr6_1:44330713-44330732 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | chr6_1:44330712-44330731 | Msa0886140:CDS | 40.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44325595-44325614 | None:intergenic | 45.0% | |
| GCTGATCCTTAACTCTGAAC+TGG | - | chr6_1:44326421-44326440 | Msa0886140:intron | 45.0% | |
| GTCATCCCAGTTCAGAGTTA+AGG | + | chr6_1:44326430-44326449 | None:intergenic | 45.0% | |
| TAACTCTGAACTGGGATGAC+AGG | - | chr6_1:44326430-44326449 | Msa0886140:intron | 45.0% | |
| AACTCTGAACTGGGATGACA+GGG | - | chr6_1:44326431-44326450 | Msa0886140:intron | 45.0% | |
| AGGGTACAAGATCCTTCCAA+TGG | - | chr6_1:44326450-44326469 | Msa0886140:intron | 45.0% | |
| CTTTGCCCCACATCCAAATA+GGG | + | chr6_1:44326531-44326550 | None:intergenic | 45.0% | |
| ACGAGTATGACACCTATCAC+GGG | - | chr6_1:44326710-44326729 | Msa0886140:intron | 45.0% | |
| TGGTGATAACACCTTAGTGG+TGG | + | chr6_1:44326836-44326855 | None:intergenic | 45.0% | |
| TGGTGATAACACCTTAGTGG+TGG | + | chr6_1:44326836-44326855 | None:intergenic | 45.0% | |
| TGGTGATAACACCTTAGTGG+TGG | + | chr6_1:44326836-44326855 | None:intergenic | 45.0% | |
| !! | GTGGCATTTTCTAGCCTTTG+TGG | + | chr6_1:44327111-44327130 | None:intergenic | 45.0% |
| AAGGCTAGAAAATGCCACAC+AGG | - | chr6_1:44327113-44327132 | Msa0886140:intron | 45.0% | |
| TCGTCATTGTTTAGCCTGTG+TGG | + | chr6_1:44327130-44327149 | None:intergenic | 45.0% | |
| GTGAATGTGTTTGCCCAATG+TGG | + | chr6_1:44327257-44327276 | None:intergenic | 45.0% | |
| GAATGCTTTGCTCAGGTAAG+GGG | + | chr6_1:44327361-44327380 | None:intergenic | 45.0% | |
| GGAATGCTTTGCTCAGGTAA+GGG | + | chr6_1:44327362-44327381 | None:intergenic | 45.0% | |
| AGGAATGCTTTGCTCAGGTA+AGG | + | chr6_1:44327363-44327382 | None:intergenic | 45.0% | |
| AGGTTTCACCTAGAATGGGT+AGG | + | chr6_1:44327499-44327518 | None:intergenic | 45.0% | |
| GGGGAAAGAAAAGTCTTTGC+AGG | + | chr6_1:44327671-44327690 | None:intergenic | 45.0% | |
| TGTTAGATTGACTGAGCCAG+AGG | + | chr6_1:44327979-44327998 | None:intergenic | 45.0% | |
| AGATGGTCGAAATGGACCTA+TGG | + | chr6_1:44328153-44328172 | None:intergenic | 45.0% | |
| TGTGGTAGAGTGAGTCTATG+TGG | + | chr6_1:44328414-44328433 | None:intergenic | 45.0% | |
| TCCCAACAAACCCACATACA+CGG | - | chr6_1:44328613-44328632 | Msa0886140:intron | 45.0% | |
| TCCATTTCAGCCGTGTATGT+GGG | + | chr6_1:44328626-44328645 | None:intergenic | 45.0% | |
| TTCCATTTCAGCCGTGTATG+TGG | + | chr6_1:44328627-44328646 | None:intergenic | 45.0% | |
| AAGATTAATCACCACGCGAG+AGG | - | chr6_1:44328733-44328752 | Msa0886140:intron | 45.0% | |
| GAAATGGAGTTCCAAGAGGA+AGG | - | chr6_1:44328772-44328791 | Msa0886140:intron | 45.0% | |
| AATGGAGTTCCAAGAGGAAG+GGG | - | chr6_1:44328774-44328793 | Msa0886140:intron | 45.0% | |
| TGTCCTCTATGCCACATCAT+TGG | - | chr6_1:44328982-44329001 | Msa0886140:intron | 45.0% | |
| AAGCCAATGATGTGGCATAG+AGG | + | chr6_1:44328988-44329007 | None:intergenic | 45.0% | |
| ! | TCTATGCCACATCATTGGCT+TGG | - | chr6_1:44328987-44329006 | Msa0886140:intron | 45.0% |
| ! | TGTGAATTGGTGGGTGATTG+AGG | - | chr6_1:44329243-44329262 | Msa0886140:intron | 45.0% |
| ! | TGGCAAACCTATGGGTGTTT+TGG | - | chr6_1:44329669-44329688 | Msa0886140:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | + | chr6_1:44329679-44329698 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | + | chr6_1:44329716-44329735 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | - | chr6_1:44329772-44329791 | Msa0886140:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | + | chr6_1:44329898-44329917 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | - | chr6_1:44330097-44330116 | Msa0886140:intron | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44330178-44330197 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44330188-44330207 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | - | chr6_1:44330213-44330232 | Msa0886140:intron | 45.0% | |
| ! | GGAAGATTTTCAGCGGCAAT+TGG | - | chr6_1:44330337-44330356 | Msa0886140:intron | 45.0% |
| ! | GATTTTCAGCGGCAATTGGA+TGG | - | chr6_1:44330341-44330360 | Msa0886140:intron | 45.0% |
| AATTGGATGGCATGGAGAAG+AGG | - | chr6_1:44330354-44330373 | Msa0886140:intron | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTAC+AGG | - | chr6_1:44330394-44330413 | Msa0886140:intron | 45.0% |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | - | chr6_1:44330569-44330588 | Msa0886140:CDS | 45.0% |
| ! | GCAGTGGCTGATGATGATTG+TGG | + | chr6_1:44325445-44325464 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44325470-44325489 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44325591-44325610 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44325592-44325611 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | + | chr6_1:44325647-44325666 | None:intergenic | 50.0% |
| TCAGGCTTGATGCCATTGGA+AGG | + | chr6_1:44326465-44326484 | None:intergenic | 50.0% | |
| ! | GGGAATAGCAAAGGCTTTGG+AGG | + | chr6_1:44326496-44326515 | None:intergenic | 50.0% |
| TGCGGGAATAGCAAAGGCTT+TGG | + | chr6_1:44326499-44326518 | None:intergenic | 50.0% | |
| GCTTTGCCCCACATCCAAAT+AGG | + | chr6_1:44326532-44326551 | None:intergenic | 50.0% | |
| TTCATGTGACGACCCGTGAT+AGG | + | chr6_1:44326725-44326744 | None:intergenic | 50.0% | |
| TGAATGTAACACCCCTGTGG+TGG | + | chr6_1:44326780-44326799 | None:intergenic | 50.0% | |
| CACCACAAAGTCCACCATAG+AGG | - | chr6_1:44326851-44326870 | Msa0886140:intron | 50.0% | |
| !! | CACCTCTATGGTGGACTTTG+TGG | + | chr6_1:44326856-44326875 | None:intergenic | 50.0% |
| TTGTGGTGTACATGCCTTCG+TGG | + | chr6_1:44327094-44327113 | None:intergenic | 50.0% | |
| ! | CGAAGGCATGTACACCACAA+AGG | - | chr6_1:44327094-44327113 | Msa0886140:intron | 50.0% |
| ! | GCCGTGTATGTGGGTTTGTT+GGG | + | chr6_1:44328617-44328636 | None:intergenic | 50.0% |
| AGCCGTGTATGTGGGTTTGT+TGG | + | chr6_1:44328618-44328637 | None:intergenic | 50.0% | |
| ACCCACATACACGGCTGAAA+TGG | - | chr6_1:44328622-44328641 | Msa0886140:intron | 50.0% | |
| TTTCTCTTCTTCCTCTCGCG+TGG | + | chr6_1:44328747-44328766 | None:intergenic | 50.0% | |
| GACGGAAATGGAGTTCCAAG+AGG | - | chr6_1:44328768-44328787 | Msa0886140:intron | 50.0% | |
| AAACGTGAACCCCTTCCTCT+TGG | + | chr6_1:44328786-44328805 | None:intergenic | 50.0% | |
| TGAGGACCAAGCCAATGATG+TGG | + | chr6_1:44328996-44329015 | None:intergenic | 50.0% | |
| AACGCGTCTAATCTCGGTCA+TGG | - | chr6_1:44329028-44329047 | Msa0886140:intron | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | + | chr6_1:44329200-44329219 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44329230-44329249 | Msa0886140:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44329234-44329253 | Msa0886140:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | + | chr6_1:44329894-44329913 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | + | chr6_1:44329895-44329914 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | - | chr6_1:44330096-44330115 | Msa0886140:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44330110-44330129 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44330190-44330209 | Msa0886140:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44330191-44330210 | Msa0886140:intron | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | + | chr6_1:44330212-44330231 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44330223-44330242 | Msa0886140:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44330230-44330249 | None:intergenic | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | + | chr6_1:44330525-44330544 | None:intergenic | 50.0% | |
| TGAAGCCTCCTTTGGATCAG+CGG | + | chr6_1:44330615-44330634 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | chr6_1:44330623-44330642 | None:intergenic | 50.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44325468-44325487 | Msa0886140:CDS | 55.0% | |
| GCAGTCAGGCTTGATGCCAT+TGG | + | chr6_1:44326469-44326488 | None:intergenic | 55.0% | |
| !! | GCTTTGGAGGTGTAGCAGTC+AGG | + | chr6_1:44326483-44326502 | None:intergenic | 55.0% |
| CTTAGTGGTGGCCTTTGTGG+TGG | + | chr6_1:44326824-44326843 | None:intergenic | 55.0% | |
| CACCACAAAGGCCACCACTA+AGG | - | chr6_1:44326822-44326841 | Msa0886140:intron | 55.0% | |
| CACCTTAGTGGTGGCCTTTG+TGG | + | chr6_1:44326827-44326846 | None:intergenic | 55.0% | |
| CACCACAAAGGCCACCACTA+AGG | - | chr6_1:44326822-44326841 | Msa0886140:intron | 55.0% | |
| CACCTTAGTGGTGGCCTTTG+TGG | + | chr6_1:44326827-44326846 | None:intergenic | 55.0% | |
| CACCACAAAGGCCACCATAG+AGG | - | chr6_1:44326936-44326955 | Msa0886140:intron | 55.0% | |
| CACCTCTATGGTGGCCTTTG+TGG | + | chr6_1:44326941-44326960 | None:intergenic | 55.0% | |
| CACCACAAAGGCCACCACTA+AGG | - | chr6_1:44326822-44326841 | Msa0886140:intron | 55.0% | |
| CACCTTAGTGGTGGCCTTTG+TGG | + | chr6_1:44326827-44326846 | None:intergenic | 55.0% | |
| CACCACAAAGGCCACCATAG+AGG | - | chr6_1:44326936-44326955 | Msa0886140:intron | 55.0% | |
| CACCTCTATGGTGGCCTTTG+TGG | + | chr6_1:44326941-44326960 | None:intergenic | 55.0% | |
| CCTTCGTGGTGTAGCCTTTG+TGG | + | chr6_1:44327080-44327099 | None:intergenic | 55.0% | |
| CCACAAAGGCTACACCACGA+AGG | - | chr6_1:44327077-44327096 | Msa0886140:intron | 55.0% | |
| ACATCGCATACCAGAGCCTC+TGG | - | chr6_1:44327960-44327979 | Msa0886140:intron | 55.0% | |
| ATTGACTGAGCCAGAGGCTC+TGG | + | chr6_1:44327973-44327992 | None:intergenic | 55.0% | |
| GGTTCGCGACGTTTCGACAA+CGG | + | chr6_1:44328132-44328151 | None:intergenic | 55.0% | |
| GTCGAAACGTCGCGAACCAT+AGG | - | chr6_1:44328134-44328153 | Msa0886140:intron | 55.0% | |
| CCTCGTCGAGATGGTCGAAA+TGG | + | chr6_1:44328161-44328180 | None:intergenic | 55.0% | |
| CCATTTCGACCATCTCGACG+AGG | - | chr6_1:44328158-44328177 | Msa0886140:intron | 55.0% | |
| ATGGATTCGCCTCGTCGAGA+TGG | + | chr6_1:44328170-44328189 | None:intergenic | 55.0% | |
| TCTCGACGAGGCGAATCCAT+TGG | - | chr6_1:44328170-44328189 | Msa0886140:intron | 55.0% | |
| GATTAGGTGCGTCCTGGTGT+CGG | + | chr6_1:44329178-44329197 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | + | chr6_1:44329194-44329213 | None:intergenic | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44329233-44329252 | Msa0886140:intron | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44330193-44330212 | None:intergenic | 55.0% | |
| TCAGCGGCAATTGGATGGCA+TGG | - | chr6_1:44330346-44330365 | Msa0886140:intron | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44330518-44330537 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | - | chr6_1:44330604-44330623 | Msa0886140:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | + | chr6_1:44330613-44330632 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | + | chr6_1:44330614-44330633 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | - | chr6_1:44330614-44330633 | Msa0886140:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44330642-44330661 | Msa0886140:CDS | 55.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | - | chr6_1:44325451-44325470 | Msa0886140:CDS | 60.0% | |
| ATCGCCACATAGGCCACCAC+AGG | - | chr6_1:44326764-44326783 | Msa0886140:intron | 60.0% | |
| TCGCCACATAGGCCACCACA+GGG | - | chr6_1:44326765-44326784 | Msa0886140:intron | 60.0% | |
| ACCAGGACGCACCTAATCCG+AGG | - | chr6_1:44329180-44329199 | Msa0886140:intron | 60.0% | |
| ! | TCCTCGGATTAGGTGCGTCC+TGG | + | chr6_1:44329184-44329203 | None:intergenic | 60.0% |
| GGATCTACAGCAGAACCCGG+AGG | + | chr6_1:44330209-44330228 | None:intergenic | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | - | chr6_1:44330506-44330525 | Msa0886140:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44330514-44330533 | Msa0886140:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | - | chr6_1:44330607-44330626 | Msa0886140:CDS | 60.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | + | chr6_1:44325461-44325480 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44325463-44325482 | Msa0886140:CDS | 65.0% | |
| CGCCACATAGGCCACCACAG+GGG | - | chr6_1:44326766-44326785 | Msa0886140:intron | 65.0% | |
| CACCCCTGTGGTGGCCTATG+TGG | + | chr6_1:44326771-44326790 | None:intergenic | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44330646-44330665 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | chr6_1:44330647-44330666 | Msa0886140:CDS | 65.0% | |
| ! | CGGTGTCGGACACCGACACC+AGG | - | chr6_1:44329163-44329182 | Msa0886140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44325430 | 44330748 | 44325430 | ID=Msa0886140;Name=Msa0886140 |
| chr6_1 | mRNA | 44325430 | 44330748 | 44325430 | ID=Msa0886140-mRNA-1;Parent=Msa0886140;Name=Msa0886140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|300 |
| chr6_1 | exon | 44330506 | 44330748 | 44330506 | ID=Msa0886140-mRNA-1:exon:9513;Parent=Msa0886140-mRNA-1 |
| chr6_1 | exon | 44325430 | 44326089 | 44325430 | ID=Msa0886140-mRNA-1:exon:9512;Parent=Msa0886140-mRNA-1 |
| chr6_1 | CDS | 44330506 | 44330748 | 44330506 | ID=Msa0886140-mRNA-1:cds;Parent=Msa0886140-mRNA-1 |
| chr6_1 | CDS | 44325430 | 44326089 | 44325430 | ID=Msa0886140-mRNA-1:cds;Parent=Msa0886140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
