Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0886190 | PNX75215.1 | 93.750 | 80 | 5 | 0 | 1 | 80 | 129 | 208 | 2.52e-43 | 162 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0886190 | sp|Q922Y0|DYRK3_MOUSE | 40.000 | 105 | 62 | 1 | 9 | 113 | 319 | 422 | 7.23e-18 | 87.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0886190 | A0A2K3L9K7 | 93.750 | 80 | 5 | 0 | 1 | 80 | 129 | 208 | 1.20e-43 | 162 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0886190 | MtrunA17_Chr5g0437131 | 96.250 | 80 | 3 | 0 | 1 | 80 | 510 | 589 | 7.45e-46 | 164 |
Msa0886190 | MtrunA17_Chr6g0480541 | 77.500 | 80 | 18 | 0 | 1 | 80 | 1005 | 1084 | 4.02e-38 | 143 |
Msa0886190 | MtrunA17_Chr6g0480481 | 76.623 | 77 | 18 | 0 | 4 | 80 | 108 | 184 | 1.17e-37 | 132 |
Msa0886190 | MtrunA17_Chr8g0369241 | 48.780 | 82 | 40 | 1 | 1 | 80 | 243 | 324 | 2.54e-18 | 85.1 |
Msa0886190 | MtrunA17_Chr6g0485251 | 80.000 | 45 | 9 | 0 | 77 | 121 | 465 | 509 | 3.86e-18 | 84.7 |
Msa0886190 | MtrunA17_Chr1g0210061 | 42.105 | 76 | 42 | 2 | 6 | 80 | 723 | 797 | 2.13e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0886190 | AT2G40120.1 | 80.000 | 80 | 16 | 0 | 1 | 80 | 368 | 447 | 2.48e-39 | 145 |
Msa0886190 | AT1G73450.1 | 75.000 | 80 | 20 | 0 | 1 | 80 | 948 | 1027 | 2.11e-36 | 138 |
Msa0886190 | AT3G17750.1 | 76.250 | 80 | 19 | 0 | 1 | 80 | 934 | 1013 | 4.10e-36 | 137 |
Msa0886190 | AT1G73460.2 | 75.000 | 80 | 20 | 0 | 1 | 80 | 965 | 1044 | 8.36e-36 | 137 |
Msa0886190 | AT1G73460.1 | 75.000 | 80 | 20 | 0 | 1 | 80 | 965 | 1044 | 8.36e-36 | 137 |
Msa0886190 | AT5G35980.3 | 48.148 | 81 | 41 | 1 | 1 | 80 | 191 | 271 | 1.39e-17 | 83.6 |
Msa0886190 | AT5G35980.1 | 48.148 | 81 | 41 | 1 | 1 | 80 | 226 | 306 | 1.40e-17 | 83.6 |
Msa0886190 | AT5G35980.2 | 48.148 | 81 | 41 | 1 | 1 | 80 | 226 | 306 | 2.25e-17 | 82.8 |
Msa0886190 | AT3G25840.2 | 38.961 | 77 | 45 | 2 | 5 | 80 | 467 | 542 | 1.21e-11 | 65.5 |
Msa0886190 | AT3G53640.1 | 37.037 | 81 | 49 | 2 | 1 | 80 | 431 | 510 | 1.71e-11 | 65.1 |
Msa0886190 | AT1G13350.1 | 40.000 | 75 | 43 | 2 | 7 | 80 | 556 | 629 | 2.35e-11 | 64.7 |
Msa0886190 | AT1G13350.3 | 40.000 | 75 | 43 | 2 | 7 | 80 | 629 | 702 | 2.49e-11 | 64.7 |
Msa0886190 | AT1G13350.2 | 40.000 | 75 | 43 | 2 | 7 | 80 | 583 | 656 | 2.68e-11 | 64.7 |
Msa0886190 | AT3G25840.1 | 38.961 | 77 | 45 | 2 | 5 | 80 | 729 | 804 | 2.86e-11 | 64.7 |
Find 48 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTCCATAATATGTTAAT+AGG | 0.235383 | 6_1:-44471061 | None:intergenic |
AGAAACCTATTAACATATTA+TGG | 0.240406 | 6_1:+44471056 | Msa0886190:CDS |
ATAATATGTTAATAGGTTTC+TGG | 0.247669 | 6_1:-44471054 | None:intergenic |
GAATAATGTGTGACTCAATT+TGG | 0.252294 | 6_1:-44470992 | None:intergenic |
GGATATTCAACATTGACTTA+TGG | 0.302469 | 6_1:+44471134 | Msa0886190:CDS |
ATTGATGACAGAACACCTTT+AGG | 0.331778 | 6_1:+44470543 | Msa0886190:CDS |
GAAATCAAAATTATTGATCT+TGG | 0.355764 | 6_1:+44470423 | Msa0886190:CDS |
TTATTCTTGTTGCCATGGTT+TGG | 0.379284 | 6_1:+44471009 | Msa0886190:CDS |
GAATGGAAATCTCACAAGTA+TGG | 0.382066 | 6_1:+44471190 | Msa0886190:CDS |
GTTCATTACTCGACAGTGTT+TGG | 0.390722 | 6_1:+44470314 | Msa0886190:CDS |
ACAAATACAGTTTCTTCAAA+TGG | 0.399770 | 6_1:-44470801 | None:intergenic |
ATTGCAATATTTACATAACT+TGG | 0.409904 | 6_1:+44470341 | Msa0886190:CDS |
AGATGATGACTTAGAAGCTT+GGG | 0.426229 | 6_1:+44470620 | Msa0886190:CDS |
CATGGCTATCAAGTATTCAA+TGG | 0.457135 | 6_1:+44470675 | Msa0886190:CDS |
TGATATGCAAGAGATGGATA+TGG | 0.461363 | 6_1:+44471109 | Msa0886190:CDS |
TCCTTCAACATGTTCACAAT+GGG | 0.482163 | 6_1:+44470950 | Msa0886190:CDS |
AGAGCTTCTAAAGTGATGTT+AGG | 0.484491 | 6_1:+44470501 | Msa0886190:CDS |
TCCCATTGTGAACATGTTGA+AGG | 0.491646 | 6_1:-44470951 | None:intergenic |
AACACTTGTGATGCAATACA+TGG | 0.492067 | 6_1:-44471162 | None:intergenic |
TCAATCAATTGAGTTGTGTA+AGG | 0.501362 | 6_1:-44470567 | None:intergenic |
CTTTAGAAGCTCTATAAGAC+CGG | 0.501887 | 6_1:-44470491 | None:intergenic |
AAGATGATGACTTAGAAGCT+TGG | 0.502033 | 6_1:+44470619 | Msa0886190:CDS |
TTGCAATATTTACATAACTT+GGG | 0.506178 | 6_1:+44470342 | Msa0886190:CDS |
ACACATTATTCTTGTTGCCA+TGG | 0.513310 | 6_1:+44471004 | Msa0886190:CDS |
AATGGGAGGATATAGAGCTT+TGG | 0.518374 | 6_1:+44470967 | Msa0886190:CDS |
CAATCAAAGATGAAAATACA+TGG | 0.527580 | 6_1:+44470657 | Msa0886190:CDS |
ATCACAAGTGTTCAAAGGAA+TGG | 0.529712 | 6_1:+44471173 | Msa0886190:CDS |
AGATGGAACTCAAGAGTGAA+TGG | 0.531060 | 6_1:+44474412 | Msa0886190:CDS |
TGAGTTGTGTAAGGACCTAA+AGG | 0.531669 | 6_1:-44470558 | None:intergenic |
CGATTGCAAAGGAAATTTGA+AGG | 0.538750 | 6_1:+44474454 | Msa0886190:CDS |
CATTACTCGACAGTGTTTGG+AGG | 0.548506 | 6_1:+44470317 | Msa0886190:CDS |
ATTTCATGATATGCAAGAGA+TGG | 0.558634 | 6_1:+44471103 | Msa0886190:CDS |
AAACTGTAATAACAGATTGG+AGG | 0.562874 | 6_1:+44470910 | Msa0886190:intron |
TCAAGAGTGAATGGTTGCAA+AGG | 0.566900 | 6_1:+44474421 | Msa0886190:CDS |
CAATTGAACTTTCCAAACCA+TGG | 0.572917 | 6_1:-44471021 | None:intergenic |
TGTGTCTATATGTACAATCC+CGG | 0.579118 | 6_1:+44470472 | Msa0886190:CDS |
TTCAACATGTTCACAATGGG+AGG | 0.584688 | 6_1:+44470953 | Msa0886190:CDS |
TATGGCTCCTTCCTCTGATG+AGG | 0.585302 | 6_1:+44471208 | Msa0886190:CDS |
CTCCTTCAACATGTTCACAA+TGG | 0.586152 | 6_1:+44470949 | Msa0886190:CDS |
TTTAGAAGCTCTATAAGACC+GGG | 0.611781 | 6_1:-44470490 | None:intergenic |
ATGCAAGAGATGGATATGGT+AGG | 0.618033 | 6_1:+44471113 | Msa0886190:CDS |
ATTGCATCACAAGTGTTCAA+AGG | 0.619602 | 6_1:+44471168 | Msa0886190:CDS |
GAAAGTTGAAGCGATTGCAA+AGG | 0.621760 | 6_1:+44474443 | Msa0886190:CDS |
GAATCCACCTCATCAGAGGA+AGG | 0.625238 | 6_1:-44471215 | None:intergenic |
ATTTGAATCCACCTCATCAG+AGG | 0.633690 | 6_1:-44471219 | None:intergenic |
ATATGTTAATAGGTTTCTGG+AGG | 0.648293 | 6_1:-44471051 | None:intergenic |
ACAGATTGGAGGACTCACAA+AGG | 0.653049 | 6_1:+44470921 | Msa0886190:intron |
AGAGGACTATGAAACTACGA+TGG | 0.724820 | 6_1:+44470743 | Msa0886190:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTATTGAATTTC+TGG | + | chr6_1:44472081-44472100 | Msa0886190:intron | 10.0% |
!!! | TTTAATTTTACTAAAATTAG+GGG | + | chr6_1:44472332-44472351 | Msa0886190:intron | 10.0% |
!!! | TGTTCATTTTATTTAATTTT+TGG | + | chr6_1:44472654-44472673 | Msa0886190:intron | 10.0% |
!! | AAATTAAATTGAACATTATT+GGG | - | chr6_1:44472680-44472699 | None:intergenic | 10.0% |
!! | TAAATTAAATTGAACATTAT+TGG | - | chr6_1:44472681-44472700 | None:intergenic | 10.0% |
!!! | TATTGCGTTTTATTTTATTT+TGG | + | chr6_1:44471516-44471535 | Msa0886190:intron | 15.0% |
!!! | TTTTTTATTACAAAACCATT+AGG | - | chr6_1:44472428-44472447 | None:intergenic | 15.0% |
!! | AAAGAAAAATAATTGTCAAA+TGG | + | chr6_1:44472506-44472525 | Msa0886190:intron | 15.0% |
!! | TGAAAATCATTATTGATAAA+TGG | + | chr6_1:44472549-44472568 | Msa0886190:intron | 15.0% |
!!! | TTTTACTAAAATTAGATGTA+TGG | + | chr6_1:44472703-44472722 | Msa0886190:intron | 15.0% |
!!! | TAATTTCATTTAAAACCATT+AGG | - | chr6_1:44472794-44472813 | None:intergenic | 15.0% |
!! | TAATTATATACATGATGATA+TGG | + | chr6_1:44473156-44473175 | Msa0886190:intron | 15.0% |
!! | ATATTCTTCATAAAAGAAAA+TGG | - | chr6_1:44473397-44473416 | None:intergenic | 15.0% |
!!! | GATTAATTCATTTCAATTTT+TGG | - | chr6_1:44473511-44473530 | None:intergenic | 15.0% |
!! | ATTGCAATATTTACATAACT+TGG | + | chr6_1:44470341-44470360 | Msa0886190:CDS | 20.0% |
!! | TTGCAATATTTACATAACTT+GGG | + | chr6_1:44470342-44470361 | Msa0886190:CDS | 20.0% |
!! | GAAATCAAAATTATTGATCT+TGG | + | chr6_1:44470423-44470442 | Msa0886190:CDS | 20.0% |
!!! | CAATTTTTTCATCATATTGA+AGG | - | chr6_1:44470527-44470546 | None:intergenic | 20.0% |
!!! | TATATTTTCTATTGTGTTAG+AGG | + | chr6_1:44470725-44470744 | Msa0886190:CDS | 20.0% |
!!! | AGAAACTGTATTTGTTTTAA+AGG | + | chr6_1:44470809-44470828 | Msa0886190:CDS | 20.0% |
!!! | GAAACTGTATTTGTTTTAAA+GGG | + | chr6_1:44470810-44470829 | Msa0886190:CDS | 20.0% |
!! | ATAATATGTTAATAGGTTTC+TGG | - | chr6_1:44471057-44471076 | None:intergenic | 20.0% |
!! | AGAAACCTATTAACATATTA+TGG | + | chr6_1:44471056-44471075 | Msa0886190:CDS | 20.0% |
!! | TGTTTCCATAATATGTTAAT+AGG | - | chr6_1:44471064-44471083 | None:intergenic | 20.0% |
!! | ATGAAATGTAATGAAAAACT+CGG | - | chr6_1:44471338-44471357 | None:intergenic | 20.0% |
!! | TTTCATTACATTTCATTCAA+TGG | + | chr6_1:44471342-44471361 | Msa0886190:intron | 20.0% |
!! | TTCATTACATTTCATTCAAT+GGG | + | chr6_1:44471343-44471362 | Msa0886190:intron | 20.0% |
!! | TCTAGAAAATTACTAAGATT+TGG | - | chr6_1:44471484-44471503 | None:intergenic | 20.0% |
!! | ACAAATTTAACACATTTAAG+TGG | + | chr6_1:44471774-44471793 | Msa0886190:intron | 20.0% |
!! | CAAATTTAACACATTTAAGT+GGG | + | chr6_1:44471775-44471794 | Msa0886190:intron | 20.0% |
!! | TTATGAATTGAAACAAACTT+AGG | + | chr6_1:44472215-44472234 | Msa0886190:intron | 20.0% |
!! | TAATTGTAAATTCCTCTAAT+CGG | + | chr6_1:44473268-44473287 | Msa0886190:intron | 20.0% |
!! | TGATTGAGTATAAACCTTTT+TGG | + | chr6_1:44470583-44470602 | Msa0886190:CDS | 25.0% |
!! | GATTGAGTATAAACCTTTTT+GGG | + | chr6_1:44470584-44470603 | Msa0886190:CDS | 25.0% |
! | CAATCAAAGATGAAAATACA+TGG | + | chr6_1:44470657-44470676 | Msa0886190:CDS | 25.0% |
! | ACAAATACAGTTTCTTCAAA+TGG | - | chr6_1:44470804-44470823 | None:intergenic | 25.0% |
! | GAAAAACTGTAATAACAGAT+TGG | + | chr6_1:44470907-44470926 | Msa0886190:intron | 25.0% |
!!! | TTTTATTTTATTTTGGCCCA+CGG | + | chr6_1:44471523-44471542 | Msa0886190:intron | 25.0% |
! | ATCTTGGAAAAATTCCATTT+CGG | - | chr6_1:44471888-44471907 | None:intergenic | 25.0% |
!! | AAATGGAATTTTTCCAAGAT+TGG | + | chr6_1:44471888-44471907 | Msa0886190:intron | 25.0% |
! | AAAACTATGGATTTGAGAAT+TGG | + | chr6_1:44471950-44471969 | Msa0886190:intron | 25.0% |
!! | TTATTGAATTTCTGGATTTC+TGG | + | chr6_1:44472089-44472108 | Msa0886190:intron | 25.0% |
! | GTATCAAGTTTATGAATTTC+TGG | + | chr6_1:44472140-44472159 | Msa0886190:intron | 25.0% |
! | AAACCATAAGTATGGTTTAA+TGG | + | chr6_1:44472252-44472271 | Msa0886190:intron | 25.0% |
! | AAACCATTAAACCATACTTA+TGG | - | chr6_1:44472258-44472277 | None:intergenic | 25.0% |
!!! | GTTTAATGGTTTTGATAGTT+AGG | + | chr6_1:44472266-44472285 | Msa0886190:intron | 25.0% |
! | AAACCATAAGTACGTTTAAA+TGG | + | chr6_1:44472367-44472386 | Msa0886190:intron | 25.0% |
! | AAACCATTTAAACGTACTTA+TGG | - | chr6_1:44472373-44472392 | None:intergenic | 25.0% |
!! | ATTTTTCTTTCACATACAAG+CGG | - | chr6_1:44472496-44472515 | None:intergenic | 25.0% |
! | AAACCATAAGTATGGTTAAA+TGG | + | chr6_1:44472733-44472752 | Msa0886190:intron | 25.0% |
! | AAACCATTTAACCATACTTA+TGG | - | chr6_1:44472739-44472758 | None:intergenic | 25.0% |
!!! | ATACTTTTTCTAGAAGTCAT+TGG | + | chr6_1:44472855-44472874 | Msa0886190:intron | 25.0% |
!!! | GTTTTCAAGTCATTTTTCAA+TGG | - | chr6_1:44472903-44472922 | None:intergenic | 25.0% |
!! | AATTACTACTAACCTTTTTC+TGG | - | chr6_1:44473141-44473160 | None:intergenic | 25.0% |
!!! | ACTCTTTTTGATTTAACTAC+TGG | - | chr6_1:44473367-44473386 | None:intergenic | 25.0% |
!!! | ATTTCAATTTTTGGTGAACT+TGG | - | chr6_1:44473502-44473521 | None:intergenic | 25.0% |
! | ATAATCTAAACAACAACTCA+TGG | - | chr6_1:44473770-44473789 | None:intergenic | 25.0% |
! | CTTTGTATATATGACTATGT+TGG | - | chr6_1:44473993-44474012 | None:intergenic | 25.0% |
! | GTTTGAGAATAAAGTGAAAT+CGG | - | chr6_1:44474090-44474109 | None:intergenic | 25.0% |
! | AACCTCTTGATAGATTTAAT+AGG | + | chr6_1:44474281-44474300 | Msa0886190:intron | 25.0% |
! | TTCCTATTAAATCTATCAAG+AGG | - | chr6_1:44474286-44474305 | None:intergenic | 25.0% |
!! | CTTTTGATTAGAACGTTTTC+AGG | - | chr6_1:44470390-44470409 | None:intergenic | 30.0% |
! | TCAATCAATTGAGTTGTGTA+AGG | - | chr6_1:44470570-44470589 | None:intergenic | 30.0% |
! | TTTTCTTTTTCCTCCCAAAA+AGG | - | chr6_1:44470600-44470619 | None:intergenic | 30.0% |
!!! | TCAACTTTTGAAGCAATTGA+AGG | + | chr6_1:44470767-44470786 | Msa0886190:CDS | 30.0% |
AAACTGTAATAACAGATTGG+AGG | + | chr6_1:44470910-44470929 | Msa0886190:intron | 30.0% | |
GAATAATGTGTGACTCAATT+TGG | - | chr6_1:44470995-44471014 | None:intergenic | 30.0% | |
! | ATATGTTAATAGGTTTCTGG+AGG | - | chr6_1:44471054-44471073 | None:intergenic | 30.0% |
ATTTCATGATATGCAAGAGA+TGG | + | chr6_1:44471103-44471122 | Msa0886190:CDS | 30.0% | |
!! | GGATATTCAACATTGACTTA+TGG | + | chr6_1:44471134-44471153 | Msa0886190:CDS | 30.0% |
!!! | TTACTCATGTTTTGACTCAA+AGG | - | chr6_1:44471293-44471312 | None:intergenic | 30.0% |
TCTTTATCAGAATGAGAACT+CGG | + | chr6_1:44471384-44471403 | Msa0886190:intron | 30.0% | |
!!! | TTTATTTTATTTTGGCCCAC+GGG | + | chr6_1:44471524-44471543 | Msa0886190:intron | 30.0% |
! | AATCAAAAAGTGTGTCTCTT+AGG | - | chr6_1:44471589-44471608 | None:intergenic | 30.0% |
CGACAAACCTATCAAAATAA+GGG | - | chr6_1:44471660-44471679 | None:intergenic | 30.0% | |
CAAGAAATTTCTTGCTGAAT+CGG | + | chr6_1:44471850-44471869 | Msa0886190:intron | 30.0% | |
CAATTCCAAAAGAAACTATG+TGG | + | chr6_1:44472003-44472022 | Msa0886190:intron | 30.0% | |
CTGGATTTGTATCAAGTTTA+TGG | + | chr6_1:44472159-44472178 | Msa0886190:intron | 30.0% | |
GAATACTGAAACCATAAGTA+TGG | + | chr6_1:44472244-44472263 | Msa0886190:intron | 30.0% | |
AAACCAAAATAACTGCCTAA+TGG | + | chr6_1:44472410-44472429 | Msa0886190:intron | 30.0% | |
! | AAACCATTAGGCAGTTATTT+TGG | - | chr6_1:44472416-44472435 | None:intergenic | 30.0% |
GAATACTGAAACCATAAGTA+TGG | + | chr6_1:44472244-44472263 | Msa0886190:intron | 30.0% | |
AAACCAAAATAACTGCCTAA+TGG | + | chr6_1:44472410-44472429 | Msa0886190:intron | 30.0% | |
! | AAACCATTAGGCAGTTATTT+TGG | - | chr6_1:44472416-44472435 | None:intergenic | 30.0% |
AAACTGCTTCAACTTTCATT+TGG | + | chr6_1:44472919-44472938 | Msa0886190:intron | 30.0% | |
AATTTGAAGGAAAGTTGAAG+CGG | - | chr6_1:44473019-44473038 | None:intergenic | 30.0% | |
TTGTCTTGCATATCATGTAT+CGG | - | chr6_1:44473439-44473458 | None:intergenic | 30.0% | |
ATACATGATATGCAAGACAA+GGG | + | chr6_1:44473439-44473458 | Msa0886190:intron | 30.0% | |
! | TTAGCTTGGTTGTGTTAAAT+GGG | - | chr6_1:44473563-44473582 | None:intergenic | 30.0% |
! | ATTAGCTTGGTTGTGTTAAA+TGG | - | chr6_1:44473564-44473583 | None:intergenic | 30.0% |
AACACATATTGAGGCATATA+CGG | - | chr6_1:44473661-44473680 | None:intergenic | 30.0% | |
ATACTGAGGTGTATTTGAAT+GGG | - | chr6_1:44473704-44473723 | None:intergenic | 30.0% | |
! | TTCTTGTGAATGAGTGTTTT+TGG | - | chr6_1:44473800-44473819 | None:intergenic | 30.0% |
CTTTATAGTCATCCCTAATA+TGG | + | chr6_1:44473859-44473878 | Msa0886190:intron | 30.0% | |
ATTTGGCTATGACCATATTA+GGG | - | chr6_1:44473874-44473893 | None:intergenic | 30.0% | |
ATATTCAGTTGTAACCTTTC+TGG | + | chr6_1:44473905-44473924 | Msa0886190:intron | 30.0% | |
! | GTAATACAAGTGTTGCATTA+TGG | - | chr6_1:44473971-44473990 | None:intergenic | 30.0% |
ATATTAGGCTCAGCTATTAA+TGG | - | chr6_1:44474020-44474039 | None:intergenic | 30.0% | |
TATGAGCATATTCGCATATT+AGG | - | chr6_1:44474035-44474054 | None:intergenic | 30.0% | |
! | TTTATGTACTTTCTGGTGAT+AGG | - | chr6_1:44474112-44474131 | None:intergenic | 30.0% |
GTGGATATTTATGTACTTTC+TGG | - | chr6_1:44474119-44474138 | None:intergenic | 30.0% | |
ACATAAATATCCACATGAAC+TGG | + | chr6_1:44474125-44474144 | Msa0886190:intron | 30.0% | |
ATTTGGACAATAGATTGTTG+CGG | + | chr6_1:44474198-44474217 | Msa0886190:intron | 30.0% | |
CGGAACATGTTTATGAAATT+GGG | + | chr6_1:44474218-44474237 | Msa0886190:intron | 30.0% | |
GGAACATGTTTATGAAATTG+GGG | + | chr6_1:44474219-44474238 | Msa0886190:intron | 30.0% | |
! | AGTTACTACTAACCTTTTTC+TGG | + | chr6_1:44474345-44474364 | Msa0886190:intron | 30.0% |
!! | TTAGAACGTTTTCAGGCTTT+AGG | - | chr6_1:44470383-44470402 | None:intergenic | 35.0% |
TGTGTCTATATGTACAATCC+CGG | + | chr6_1:44470472-44470491 | Msa0886190:CDS | 35.0% | |
TTTAGAAGCTCTATAAGACC+GGG | - | chr6_1:44470493-44470512 | None:intergenic | 35.0% | |
! | CTTTAGAAGCTCTATAAGAC+CGG | - | chr6_1:44470494-44470513 | None:intergenic | 35.0% |
!! | AGAGCTTCTAAAGTGATGTT+AGG | + | chr6_1:44470501-44470520 | Msa0886190:CDS | 35.0% |
! | ATTGATGACAGAACACCTTT+AGG | + | chr6_1:44470543-44470562 | Msa0886190:CDS | 35.0% |
!! | TGAGTATAAACCTTTTTGGG+AGG | + | chr6_1:44470587-44470606 | Msa0886190:CDS | 35.0% |
AAGATGATGACTTAGAAGCT+TGG | + | chr6_1:44470619-44470638 | Msa0886190:CDS | 35.0% | |
AGATGATGACTTAGAAGCTT+GGG | + | chr6_1:44470620-44470639 | Msa0886190:CDS | 35.0% | |
CATGGCTATCAAGTATTCAA+TGG | + | chr6_1:44470675-44470694 | Msa0886190:CDS | 35.0% | |
!!! | ACTTTTGAAGCAATTGAAGG+AGG | + | chr6_1:44470770-44470789 | Msa0886190:CDS | 35.0% |
!!! | CTTTTGAAGCAATTGAAGGA+GGG | + | chr6_1:44470771-44470790 | Msa0886190:CDS | 35.0% |
TCAGCAATGAGAATTTGCAA+AGG | + | chr6_1:44470855-44470874 | Msa0886190:intron | 35.0% | |
TCCTTCAACATGTTCACAAT+GGG | + | chr6_1:44470950-44470969 | Msa0886190:CDS | 35.0% | |
ACACATTATTCTTGTTGCCA+TGG | + | chr6_1:44471004-44471023 | Msa0886190:CDS | 35.0% | |
TTATTCTTGTTGCCATGGTT+TGG | + | chr6_1:44471009-44471028 | Msa0886190:CDS | 35.0% | |
CAATTGAACTTTCCAAACCA+TGG | - | chr6_1:44471024-44471043 | None:intergenic | 35.0% | |
TGATATGCAAGAGATGGATA+TGG | + | chr6_1:44471109-44471128 | Msa0886190:CDS | 35.0% | |
AACACTTGTGATGCAATACA+TGG | - | chr6_1:44471165-44471184 | None:intergenic | 35.0% | |
ATTGCATCACAAGTGTTCAA+AGG | + | chr6_1:44471168-44471187 | Msa0886190:CDS | 35.0% | |
ATCACAAGTGTTCAAAGGAA+TGG | + | chr6_1:44471173-44471192 | Msa0886190:CDS | 35.0% | |
GAATGGAAATCTCACAAGTA+TGG | + | chr6_1:44471190-44471209 | Msa0886190:CDS | 35.0% | |
ACAATTCCATTGTTTGACAG+CGG | + | chr6_1:44471251-44471270 | Msa0886190:intron | 35.0% | |
CTTTATCAGAATGAGAACTC+GGG | + | chr6_1:44471385-44471404 | Msa0886190:intron | 35.0% | |
TTTATCAGAATGAGAACTCG+GGG | + | chr6_1:44471386-44471405 | Msa0886190:intron | 35.0% | |
GAAAGAAATAACAAACCCGT+GGG | - | chr6_1:44471542-44471561 | None:intergenic | 35.0% | |
TGAAAGAAATAACAAACCCG+TGG | - | chr6_1:44471543-44471562 | None:intergenic | 35.0% | |
! | TCGAGATTTTCTCTCAATTC+TGG | + | chr6_1:44471621-44471640 | Msa0886190:intron | 35.0% |
! | AGATTTTCTCTCAATTCTGG+TGG | + | chr6_1:44471624-44471643 | Msa0886190:intron | 35.0% |
!!! | CTGGAAACCCTTATTTTGAT+AGG | + | chr6_1:44471650-44471669 | Msa0886190:intron | 35.0% |
GCGACAAACCTATCAAAATA+AGG | - | chr6_1:44471661-44471680 | None:intergenic | 35.0% | |
GCGACAAACTTGTGAAAATA+GGG | - | chr6_1:44471690-44471709 | None:intergenic | 35.0% | |
AGCGACAAACTTGTGAAAAT+AGG | - | chr6_1:44471691-44471710 | None:intergenic | 35.0% | |
! | GAACTTGTTCCATTCTATCT+AGG | + | chr6_1:44471714-44471733 | Msa0886190:intron | 35.0% |
GTTAAATTTGTGACGCAGTA+CGG | - | chr6_1:44471765-44471784 | None:intergenic | 35.0% | |
ACCAAAGATGCCTAATCAAT+GGG | + | chr6_1:44471802-44471821 | Msa0886190:intron | 35.0% | |
! | CTGTCTTTATCCCATTGATT+AGG | - | chr6_1:44471815-44471834 | None:intergenic | 35.0% |
!! | TTCTCGTTTTAGACCAATCT+TGG | - | chr6_1:44471904-44471923 | None:intergenic | 35.0% |
! | CTTCTCCACATAGTTTCTTT+TGG | - | chr6_1:44472011-44472030 | None:intergenic | 35.0% |
CAAAAGAAACTATGTGGAGA+AGG | + | chr6_1:44472009-44472028 | Msa0886190:intron | 35.0% | |
TTGAAACAAACTTAGGCGTA+TGG | + | chr6_1:44472222-44472241 | Msa0886190:intron | 35.0% | |
CGATTGCAAAGGAAATTTGA+AGG | - | chr6_1:44474454-44474473 | None:intergenic | 35.0% | |
! | CTAACCTTTTTCTGGATTGT+TGG | - | chr6_1:44474353-44474372 | None:intergenic | 35.0% |
TTTATGAGTCCAGCTCTTAT+TGG | - | chr6_1:44473212-44473231 | None:intergenic | 35.0% | |
! | ATGACATGTGAAGTTTTCAC+AGG | - | chr6_1:44473235-44473254 | None:intergenic | 35.0% |
TGAAATCTTCTTCCGATTAG+AGG | - | chr6_1:44473283-44473302 | None:intergenic | 35.0% | |
GTGTCAAAGAAGAAAGCTTT+CGG | - | chr6_1:44473327-44473346 | None:intergenic | 35.0% | |
TGATTTAACTACTGGAGTGA+CGG | - | chr6_1:44473359-44473378 | None:intergenic | 35.0% | |
GATACATGATATGCAAGACA+AGG | + | chr6_1:44473438-44473457 | Msa0886190:intron | 35.0% | |
!! | GGTTGTGTTAAATGGGTTTT+TGG | - | chr6_1:44473556-44473575 | None:intergenic | 35.0% |
TGGTTGTCTTGATATTAGCT+TGG | - | chr6_1:44473577-44473596 | None:intergenic | 35.0% | |
AAGCTAATATCAAGACAACC+AGG | + | chr6_1:44473576-44473595 | Msa0886190:intron | 35.0% | |
GTCATTTAACTGTTGCAATG+AGG | - | chr6_1:44473637-44473656 | None:intergenic | 35.0% | |
ATTTGAATGGGATGTGTCAT+TGG | - | chr6_1:44473692-44473711 | None:intergenic | 35.0% | |
GATACTGAGGTGTATTTGAA+TGG | - | chr6_1:44473705-44473724 | None:intergenic | 35.0% | |
!! | TTACCAGGATTTTGATACTG+AGG | - | chr6_1:44473718-44473737 | None:intergenic | 35.0% |
GATTTGGCTATGACCATATT+AGG | - | chr6_1:44473875-44473894 | None:intergenic | 35.0% | |
GAATATCGTCTTCATGGATT+TGG | - | chr6_1:44473891-44473910 | None:intergenic | 35.0% | |
ACAACTGAATATCGTCTTCA+TGG | - | chr6_1:44473897-44473916 | None:intergenic | 35.0% | |
ATTATGGAACTCTGTTACTG+AGG | - | chr6_1:44473955-44473974 | None:intergenic | 35.0% | |
! | ATGCTCATAACCATTTTCCA+AGG | + | chr6_1:44474046-44474065 | Msa0886190:intron | 35.0% |
! | TGCTCATAACCATTTTCCAA+GGG | + | chr6_1:44474047-44474066 | Msa0886190:intron | 35.0% |
AGAAATGCATCATCGTACAA+CGG | + | chr6_1:44474170-44474189 | Msa0886190:intron | 35.0% | |
GCGGAACATGTTTATGAAAT+TGG | + | chr6_1:44474217-44474236 | Msa0886190:intron | 35.0% | |
GTTCATTACTCGACAGTGTT+TGG | + | chr6_1:44470314-44470333 | Msa0886190:CDS | 40.0% | |
TGAGTTGTGTAAGGACCTAA+AGG | - | chr6_1:44470561-44470580 | None:intergenic | 40.0% | |
AGAGGACTATGAAACTACGA+TGG | + | chr6_1:44470743-44470762 | Msa0886190:CDS | 40.0% | |
CTCCTTCAACATGTTCACAA+TGG | + | chr6_1:44470949-44470968 | Msa0886190:CDS | 40.0% | |
TCCCATTGTGAACATGTTGA+AGG | - | chr6_1:44470954-44470973 | None:intergenic | 40.0% | |
TTCAACATGTTCACAATGGG+AGG | + | chr6_1:44470953-44470972 | Msa0886190:CDS | 40.0% | |
AATGGGAGGATATAGAGCTT+TGG | + | chr6_1:44470967-44470986 | Msa0886190:CDS | 40.0% | |
ATGCAAGAGATGGATATGGT+AGG | + | chr6_1:44471113-44471132 | Msa0886190:CDS | 40.0% | |
ATTTGAATCCACCTCATCAG+AGG | - | chr6_1:44471222-44471241 | None:intergenic | 40.0% | |
CATTTCATTCAATGGGATCC+AGG | + | chr6_1:44471350-44471369 | Msa0886190:intron | 40.0% | |
AGCGCTAAACCTAGATAGAA+TGG | - | chr6_1:44471726-44471745 | None:intergenic | 40.0% | |
CACCAAAGATGCCTAATCAA+TGG | + | chr6_1:44471801-44471820 | Msa0886190:intron | 40.0% | |
! | TCCCATTGATTAGGCATCTT+TGG | - | chr6_1:44471806-44471825 | None:intergenic | 40.0% |
CAATGGGATAAAGACAGTTG+TGG | + | chr6_1:44471818-44471837 | Msa0886190:intron | 40.0% | |
TTTCTTGCTGAATCGGAGAA+TGG | + | chr6_1:44471857-44471876 | Msa0886190:intron | 40.0% | |
! | TGGTCTAAAACGAGAAAGCA+TGG | + | chr6_1:44471908-44471927 | Msa0886190:intron | 40.0% |
! | GGTCTAAAACGAGAAAGCAT+GGG | + | chr6_1:44471909-44471928 | Msa0886190:intron | 40.0% |
AAGTTGAAGGGAAGTTGAAG+CGG | - | chr6_1:44472947-44472966 | None:intergenic | 40.0% | |
GGTTGCAAAGGAAAGTTGAA+GGG | - | chr6_1:44474433-44474452 | None:intergenic | 40.0% | |
GTTGCAAAGGAAAGTTGAAG+CGG | - | chr6_1:44474434-44474453 | None:intergenic | 40.0% | |
TCAAGAGTGAATGGTTGCAA+AGG | - | chr6_1:44474421-44474440 | None:intergenic | 40.0% | |
!! | AAGCGGTTTTCAAGAGTGAA+TGG | - | chr6_1:44473002-44473021 | None:intergenic | 40.0% |
GAAAGTTGAAGCGATTGCAA+AGG | - | chr6_1:44474443-44474462 | None:intergenic | 40.0% | |
TCAAGAGTGAATGGTTGCAA+AGG | - | chr6_1:44474421-44474440 | None:intergenic | 40.0% | |
AGATGGAACTCAAGAGTGAA+TGG | - | chr6_1:44474412-44474431 | None:intergenic | 40.0% | |
GATAGAGTTCTCTTGTGTAC+AGG | - | chr6_1:44474389-44474408 | None:intergenic | 40.0% | |
GAGAACTCTATCTGTTGCTA+TGG | + | chr6_1:44473105-44473124 | Msa0886190:intron | 40.0% | |
!! | TTTGGTGAACTTGGTGTCAA+GGG | - | chr6_1:44473493-44473512 | None:intergenic | 40.0% |
!!! | TTTTGGTGAACTTGGTGTCA+AGG | - | chr6_1:44473494-44473513 | None:intergenic | 40.0% |
ACAACCAGGTAGATCTTCTA+TGG | + | chr6_1:44473590-44473609 | Msa0886190:intron | 40.0% | |
CAACCAGGTAGATCTTCTAT+GGG | + | chr6_1:44473591-44473610 | Msa0886190:intron | 40.0% | |
ACACCTCAGTATCAAAATCC+TGG | + | chr6_1:44473712-44473731 | Msa0886190:intron | 40.0% | |
! | TCAAAATCCTGGTAACGACT+TGG | + | chr6_1:44473723-44473742 | Msa0886190:intron | 40.0% |
! | GTTGTAACCTTTCTGGTGAT+AGG | + | chr6_1:44473912-44473931 | Msa0886190:intron | 40.0% |
CTCTGTTACTGAGGAAGTTA+AGG | - | chr6_1:44473946-44473965 | None:intergenic | 40.0% | |
CCTTCATTACCCTTGGAAAA+TGG | - | chr6_1:44474059-44474078 | None:intergenic | 40.0% | |
! | CCATTTTCCAAGGGTAATGA+AGG | + | chr6_1:44474056-44474075 | Msa0886190:intron | 40.0% |
TTTGACACCTTCATTACCCT+TGG | - | chr6_1:44474066-44474085 | None:intergenic | 40.0% | |
ATATCCACATGAACTGGTTG+TGG | + | chr6_1:44474131-44474150 | Msa0886190:intron | 40.0% | |
! | TTTTCCACAACCAGTTCATG+TGG | - | chr6_1:44474138-44474157 | None:intergenic | 40.0% |
CATGAACTGGTTGTGGAAAA+TGG | + | chr6_1:44474138-44474157 | Msa0886190:intron | 40.0% | |
ATCGTACAACGGATGAGATT+TGG | + | chr6_1:44474181-44474200 | Msa0886190:intron | 40.0% | |
TTTCTTGCGCTTGCAAATCA+TGG | - | chr6_1:44474262-44474281 | None:intergenic | 40.0% | |
GGCTACAACAATCCAGAAAA+AGG | - | chr6_1:44474360-44474379 | None:intergenic | 40.0% | |
GAGAACTCTATCTGTTGCTA+TGG | - | chr6_1:44473105-44473124 | None:intergenic | 40.0% | |
GATAGAGTTCTCTTGTGTAC+AGG | + | chr6_1:44474389-44474408 | Msa0886190:intron | 40.0% | |
AGATGGAACTCAAGAGTGAA+TGG | + | chr6_1:44474412-44474431 | Msa0886190:CDS | 40.0% | |
TCAAGAGTGAATGGTTGCAA+AGG | + | chr6_1:44474421-44474440 | Msa0886190:CDS | 40.0% | |
GAAAGTTGAAGCGATTGCAA+AGG | + | chr6_1:44474443-44474462 | Msa0886190:CDS | 40.0% | |
CATTACTCGACAGTGTTTGG+AGG | + | chr6_1:44470317-44470336 | Msa0886190:CDS | 45.0% | |
ACAGATTGGAGGACTCACAA+AGG | + | chr6_1:44470921-44470940 | Msa0886190:intron | 45.0% | |
TTCATTCAATGGGATCCAGG+AGG | + | chr6_1:44471353-44471372 | Msa0886190:intron | 45.0% | |
TCATTCAATGGGATCCAGGA+GGG | + | chr6_1:44471354-44471373 | Msa0886190:intron | 45.0% | |
!! | CTCTCAATTCTGGTGGATTC+TGG | + | chr6_1:44471631-44471650 | Msa0886190:intron | 45.0% |
GGAGAATGGCAATACCGAAA+TGG | + | chr6_1:44471871-44471890 | Msa0886190:intron | 45.0% | |
! | ACGAGAAAGCATGGGAAGAA+TGG | + | chr6_1:44471917-44471936 | Msa0886190:intron | 45.0% |
AAAGCATGGGAAGAATGGCA+AGG | + | chr6_1:44471922-44471941 | Msa0886190:intron | 45.0% | |
TGGCAAGGCTGCAAAAACTA+TGG | + | chr6_1:44471937-44471956 | Msa0886190:intron | 45.0% | |
CGGTTGCAAAGGAAAGTTGA+AGG | - | chr6_1:44472960-44472979 | None:intergenic | 45.0% | |
GAAAGTTGAAGCGGTTGCAA+AGG | - | chr6_1:44472971-44472990 | None:intergenic | 45.0% | |
GTTCTCTTGTGTACAGGAGA+TGG | - | chr6_1:44474395-44474414 | None:intergenic | 45.0% | |
GGCTCCAACAATCCAGAAAA+AGG | + | chr6_1:44473126-44473145 | Msa0886190:intron | 45.0% | |
TTCCACATGCCAATAAGAGC+TGG | + | chr6_1:44473200-44473219 | Msa0886190:intron | 45.0% | |
TGTATCGGAGCATGGAAGAA+TGG | - | chr6_1:44473424-44473443 | None:intergenic | 45.0% | |
GCATATCATGTATCGGAGCA+TGG | - | chr6_1:44473432-44473451 | None:intergenic | 45.0% | |
! | AATGGGATGTGTCATTGGTG+GGG | - | chr6_1:44473687-44473706 | None:intergenic | 45.0% |
! | GAATGGGATGTGTCATTGGT+GGG | - | chr6_1:44473688-44473707 | None:intergenic | 45.0% |
! | TGAATGGGATGTGTCATTGG+TGG | - | chr6_1:44473689-44473708 | None:intergenic | 45.0% |
TGATATGCCAAGTCGTTACC+AGG | - | chr6_1:44473733-44473752 | None:intergenic | 45.0% | |
! | GTAACCTTTCTGGTGATAGG+AGG | + | chr6_1:44473915-44473934 | Msa0886190:intron | 45.0% |
CATTCCTCCTATCACCAGAA+AGG | - | chr6_1:44473922-44473941 | None:intergenic | 45.0% | |
GTTCTCTTGTGTACAGGAGA+TGG | + | chr6_1:44474395-44474414 | Msa0886190:intron | 45.0% | |
!!! | AATTTAATTTTACTAAAATT+AGG | + | chr6_1:44472330-44472349 | Msa0886190:intron | 5.0% |
!!! | ATTTAATTTTACTAAAATTA+GGG | + | chr6_1:44472331-44472350 | Msa0886190:intron | 5.0% |
TATGGCTCCTTCCTCTGATG+AGG | + | chr6_1:44471208-44471227 | Msa0886190:CDS | 50.0% | |
GAATCCACCTCATCAGAGGA+AGG | - | chr6_1:44471218-44471237 | None:intergenic | 50.0% | |
GAGATGCCGCTGTCAAACAA+TGG | - | chr6_1:44471260-44471279 | None:intergenic | 50.0% | |
ATAAAGAGCTTCCACCCTCC+TGG | - | chr6_1:44471371-44471390 | None:intergenic | 50.0% | |
! | GTCGAGTTCTTTAGAGGTGG+AGG | + | chr6_1:44471408-44471427 | Msa0886190:intron | 50.0% |
TGGAGGAAACTGATGCAGGA+GGG | + | chr6_1:44471425-44471444 | Msa0886190:intron | 50.0% | |
GTCCAGCTCTTATTGGCATG+TGG | - | chr6_1:44473205-44473224 | None:intergenic | 50.0% | |
!! | ACTGGAGTGACGGATGAGAT+TGG | - | chr6_1:44473349-44473368 | None:intergenic | 50.0% |
!! | AACTTGGTGTCAAGGGCTCA+TGG | - | chr6_1:44473486-44473505 | None:intergenic | 50.0% |
TCGCCCATAGAAGATCTACC+TGG | - | chr6_1:44473597-44473616 | None:intergenic | 50.0% | |
GGTAGATCTTCTATGGGCGA+AGG | + | chr6_1:44473597-44473616 | Msa0886190:intron | 50.0% | |
GTGGGGAGGAACACATATTG+AGG | - | chr6_1:44473670-44473689 | None:intergenic | 50.0% | |
TTCAATGGGATCCAGGAGGG+TGG | + | chr6_1:44471357-44471376 | Msa0886190:intron | 55.0% | |
CTCGGGGTCGAGTTCTTTAG+AGG | + | chr6_1:44471402-44471421 | Msa0886190:intron | 55.0% | |
! | GGGGTCGAGTTCTTTAGAGG+TGG | + | chr6_1:44471405-44471424 | Msa0886190:intron | 55.0% |
GAGGTGGAGGAAACTGATGC+AGG | + | chr6_1:44471421-44471440 | Msa0886190:intron | 55.0% | |
GTGGAGGAAACTGATGCAGG+AGG | + | chr6_1:44471424-44471443 | Msa0886190:intron | 55.0% | |
! | TGACGCAGTACGGAAGCGTA+GGG | - | chr6_1:44471755-44471774 | None:intergenic | 55.0% |
GGCTCCTTCCTCTGATGAGG+TGG | + | chr6_1:44471211-44471230 | Msa0886190:intron | 60.0% | |
! | GTGACGCAGTACGGAAGCGT+AGG | - | chr6_1:44471756-44471775 | None:intergenic | 60.0% |
! | GGGATGTGTCATTGGTGGGG+AGG | - | chr6_1:44473684-44473703 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 44470309 | 44474473 | 44470309 | ID=Msa0886190;Name=Msa0886190 |
chr6_1 | mRNA | 44470309 | 44474473 | 44470309 | ID=Msa0886190-mRNA-1;Parent=Msa0886190;Name=Msa0886190-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.33|1|1|3|0|296 |
chr6_1 | exon | 44470309 | 44470831 | 44470309 | ID=Msa0886190-mRNA-1:exon:9531;Parent=Msa0886190-mRNA-1 |
chr6_1 | exon | 44470925 | 44471229 | 44470925 | ID=Msa0886190-mRNA-1:exon:9532;Parent=Msa0886190-mRNA-1 |
chr6_1 | exon | 44474411 | 44474473 | 44474411 | ID=Msa0886190-mRNA-1:exon:9533;Parent=Msa0886190-mRNA-1 |
chr6_1 | CDS | 44470309 | 44470831 | 44470309 | ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1 |
chr6_1 | CDS | 44470925 | 44471229 | 44470925 | ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1 |
chr6_1 | CDS | 44474411 | 44474473 | 44474411 | ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1 |
Gene Sequence |
Protein sequence |