AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0886190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886190 MtrunA17_Chr5g0437131 96.250 80 3 0 1 80 510 589 7.45e-46 164
Msa0886190 MtrunA17_Chr6g0480541 77.500 80 18 0 1 80 1005 1084 4.02e-38 143
Msa0886190 MtrunA17_Chr6g0480481 76.623 77 18 0 4 80 108 184 1.17e-37 132
Msa0886190 MtrunA17_Chr8g0369241 48.780 82 40 1 1 80 243 324 2.54e-18 85.1
Msa0886190 MtrunA17_Chr6g0485251 80.000 45 9 0 77 121 465 509 3.86e-18 84.7
Msa0886190 MtrunA17_Chr1g0210061 42.105 76 42 2 6 80 723 797 2.13e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886190 AT2G40120.1 80.000 80 16 0 1 80 368 447 2.48e-39 145
Msa0886190 AT1G73450.1 75.000 80 20 0 1 80 948 1027 2.11e-36 138
Msa0886190 AT3G17750.1 76.250 80 19 0 1 80 934 1013 4.10e-36 137
Msa0886190 AT1G73460.2 75.000 80 20 0 1 80 965 1044 8.36e-36 137
Msa0886190 AT1G73460.1 75.000 80 20 0 1 80 965 1044 8.36e-36 137
Msa0886190 AT5G35980.3 48.148 81 41 1 1 80 191 271 1.39e-17 83.6
Msa0886190 AT5G35980.1 48.148 81 41 1 1 80 226 306 1.40e-17 83.6
Msa0886190 AT5G35980.2 48.148 81 41 1 1 80 226 306 2.25e-17 82.8
Msa0886190 AT3G25840.2 38.961 77 45 2 5 80 467 542 1.21e-11 65.5
Msa0886190 AT3G53640.1 37.037 81 49 2 1 80 431 510 1.71e-11 65.1
Msa0886190 AT1G13350.1 40.000 75 43 2 7 80 556 629 2.35e-11 64.7
Msa0886190 AT1G13350.3 40.000 75 43 2 7 80 629 702 2.49e-11 64.7
Msa0886190 AT1G13350.2 40.000 75 43 2 7 80 583 656 2.68e-11 64.7
Msa0886190 AT3G25840.1 38.961 77 45 2 5 80 729 804 2.86e-11 64.7

Find 48 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCCATAATATGTTAAT+AGG 0.235383 6_1:-44471061 None:intergenic
AGAAACCTATTAACATATTA+TGG 0.240406 6_1:+44471056 Msa0886190:CDS
ATAATATGTTAATAGGTTTC+TGG 0.247669 6_1:-44471054 None:intergenic
GAATAATGTGTGACTCAATT+TGG 0.252294 6_1:-44470992 None:intergenic
GGATATTCAACATTGACTTA+TGG 0.302469 6_1:+44471134 Msa0886190:CDS
ATTGATGACAGAACACCTTT+AGG 0.331778 6_1:+44470543 Msa0886190:CDS
GAAATCAAAATTATTGATCT+TGG 0.355764 6_1:+44470423 Msa0886190:CDS
TTATTCTTGTTGCCATGGTT+TGG 0.379284 6_1:+44471009 Msa0886190:CDS
GAATGGAAATCTCACAAGTA+TGG 0.382066 6_1:+44471190 Msa0886190:CDS
GTTCATTACTCGACAGTGTT+TGG 0.390722 6_1:+44470314 Msa0886190:CDS
ACAAATACAGTTTCTTCAAA+TGG 0.399770 6_1:-44470801 None:intergenic
ATTGCAATATTTACATAACT+TGG 0.409904 6_1:+44470341 Msa0886190:CDS
AGATGATGACTTAGAAGCTT+GGG 0.426229 6_1:+44470620 Msa0886190:CDS
CATGGCTATCAAGTATTCAA+TGG 0.457135 6_1:+44470675 Msa0886190:CDS
TGATATGCAAGAGATGGATA+TGG 0.461363 6_1:+44471109 Msa0886190:CDS
TCCTTCAACATGTTCACAAT+GGG 0.482163 6_1:+44470950 Msa0886190:CDS
AGAGCTTCTAAAGTGATGTT+AGG 0.484491 6_1:+44470501 Msa0886190:CDS
TCCCATTGTGAACATGTTGA+AGG 0.491646 6_1:-44470951 None:intergenic
AACACTTGTGATGCAATACA+TGG 0.492067 6_1:-44471162 None:intergenic
TCAATCAATTGAGTTGTGTA+AGG 0.501362 6_1:-44470567 None:intergenic
CTTTAGAAGCTCTATAAGAC+CGG 0.501887 6_1:-44470491 None:intergenic
AAGATGATGACTTAGAAGCT+TGG 0.502033 6_1:+44470619 Msa0886190:CDS
TTGCAATATTTACATAACTT+GGG 0.506178 6_1:+44470342 Msa0886190:CDS
ACACATTATTCTTGTTGCCA+TGG 0.513310 6_1:+44471004 Msa0886190:CDS
AATGGGAGGATATAGAGCTT+TGG 0.518374 6_1:+44470967 Msa0886190:CDS
CAATCAAAGATGAAAATACA+TGG 0.527580 6_1:+44470657 Msa0886190:CDS
ATCACAAGTGTTCAAAGGAA+TGG 0.529712 6_1:+44471173 Msa0886190:CDS
AGATGGAACTCAAGAGTGAA+TGG 0.531060 6_1:+44474412 Msa0886190:CDS
TGAGTTGTGTAAGGACCTAA+AGG 0.531669 6_1:-44470558 None:intergenic
CGATTGCAAAGGAAATTTGA+AGG 0.538750 6_1:+44474454 Msa0886190:CDS
CATTACTCGACAGTGTTTGG+AGG 0.548506 6_1:+44470317 Msa0886190:CDS
ATTTCATGATATGCAAGAGA+TGG 0.558634 6_1:+44471103 Msa0886190:CDS
AAACTGTAATAACAGATTGG+AGG 0.562874 6_1:+44470910 Msa0886190:intron
TCAAGAGTGAATGGTTGCAA+AGG 0.566900 6_1:+44474421 Msa0886190:CDS
CAATTGAACTTTCCAAACCA+TGG 0.572917 6_1:-44471021 None:intergenic
TGTGTCTATATGTACAATCC+CGG 0.579118 6_1:+44470472 Msa0886190:CDS
TTCAACATGTTCACAATGGG+AGG 0.584688 6_1:+44470953 Msa0886190:CDS
TATGGCTCCTTCCTCTGATG+AGG 0.585302 6_1:+44471208 Msa0886190:CDS
CTCCTTCAACATGTTCACAA+TGG 0.586152 6_1:+44470949 Msa0886190:CDS
TTTAGAAGCTCTATAAGACC+GGG 0.611781 6_1:-44470490 None:intergenic
ATGCAAGAGATGGATATGGT+AGG 0.618033 6_1:+44471113 Msa0886190:CDS
ATTGCATCACAAGTGTTCAA+AGG 0.619602 6_1:+44471168 Msa0886190:CDS
GAAAGTTGAAGCGATTGCAA+AGG 0.621760 6_1:+44474443 Msa0886190:CDS
GAATCCACCTCATCAGAGGA+AGG 0.625238 6_1:-44471215 None:intergenic
ATTTGAATCCACCTCATCAG+AGG 0.633690 6_1:-44471219 None:intergenic
ATATGTTAATAGGTTTCTGG+AGG 0.648293 6_1:-44471051 None:intergenic
ACAGATTGGAGGACTCACAA+AGG 0.653049 6_1:+44470921 Msa0886190:intron
AGAGGACTATGAAACTACGA+TGG 0.724820 6_1:+44470743 Msa0886190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTATTGAATTTC+TGG + chr6_1:44472081-44472100 Msa0886190:intron 10.0%
!!! TTTAATTTTACTAAAATTAG+GGG + chr6_1:44472332-44472351 Msa0886190:intron 10.0%
!!! TGTTCATTTTATTTAATTTT+TGG + chr6_1:44472654-44472673 Msa0886190:intron 10.0%
!! AAATTAAATTGAACATTATT+GGG - chr6_1:44472680-44472699 None:intergenic 10.0%
!! TAAATTAAATTGAACATTAT+TGG - chr6_1:44472681-44472700 None:intergenic 10.0%
!!! TATTGCGTTTTATTTTATTT+TGG + chr6_1:44471516-44471535 Msa0886190:intron 15.0%
!!! TTTTTTATTACAAAACCATT+AGG - chr6_1:44472428-44472447 None:intergenic 15.0%
!! AAAGAAAAATAATTGTCAAA+TGG + chr6_1:44472506-44472525 Msa0886190:intron 15.0%
!! TGAAAATCATTATTGATAAA+TGG + chr6_1:44472549-44472568 Msa0886190:intron 15.0%
!!! TTTTACTAAAATTAGATGTA+TGG + chr6_1:44472703-44472722 Msa0886190:intron 15.0%
!!! TAATTTCATTTAAAACCATT+AGG - chr6_1:44472794-44472813 None:intergenic 15.0%
!! TAATTATATACATGATGATA+TGG + chr6_1:44473156-44473175 Msa0886190:intron 15.0%
!! ATATTCTTCATAAAAGAAAA+TGG - chr6_1:44473397-44473416 None:intergenic 15.0%
!!! GATTAATTCATTTCAATTTT+TGG - chr6_1:44473511-44473530 None:intergenic 15.0%
!! ATTGCAATATTTACATAACT+TGG + chr6_1:44470341-44470360 Msa0886190:CDS 20.0%
!! TTGCAATATTTACATAACTT+GGG + chr6_1:44470342-44470361 Msa0886190:CDS 20.0%
!! GAAATCAAAATTATTGATCT+TGG + chr6_1:44470423-44470442 Msa0886190:CDS 20.0%
!!! CAATTTTTTCATCATATTGA+AGG - chr6_1:44470527-44470546 None:intergenic 20.0%
!!! TATATTTTCTATTGTGTTAG+AGG + chr6_1:44470725-44470744 Msa0886190:CDS 20.0%
!!! AGAAACTGTATTTGTTTTAA+AGG + chr6_1:44470809-44470828 Msa0886190:CDS 20.0%
!!! GAAACTGTATTTGTTTTAAA+GGG + chr6_1:44470810-44470829 Msa0886190:CDS 20.0%
!! ATAATATGTTAATAGGTTTC+TGG - chr6_1:44471057-44471076 None:intergenic 20.0%
!! AGAAACCTATTAACATATTA+TGG + chr6_1:44471056-44471075 Msa0886190:CDS 20.0%
!! TGTTTCCATAATATGTTAAT+AGG - chr6_1:44471064-44471083 None:intergenic 20.0%
!! ATGAAATGTAATGAAAAACT+CGG - chr6_1:44471338-44471357 None:intergenic 20.0%
!! TTTCATTACATTTCATTCAA+TGG + chr6_1:44471342-44471361 Msa0886190:intron 20.0%
!! TTCATTACATTTCATTCAAT+GGG + chr6_1:44471343-44471362 Msa0886190:intron 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr6_1:44471484-44471503 None:intergenic 20.0%
!! ACAAATTTAACACATTTAAG+TGG + chr6_1:44471774-44471793 Msa0886190:intron 20.0%
!! CAAATTTAACACATTTAAGT+GGG + chr6_1:44471775-44471794 Msa0886190:intron 20.0%
!! TTATGAATTGAAACAAACTT+AGG + chr6_1:44472215-44472234 Msa0886190:intron 20.0%
!! TAATTGTAAATTCCTCTAAT+CGG + chr6_1:44473268-44473287 Msa0886190:intron 20.0%
!! TGATTGAGTATAAACCTTTT+TGG + chr6_1:44470583-44470602 Msa0886190:CDS 25.0%
!! GATTGAGTATAAACCTTTTT+GGG + chr6_1:44470584-44470603 Msa0886190:CDS 25.0%
! CAATCAAAGATGAAAATACA+TGG + chr6_1:44470657-44470676 Msa0886190:CDS 25.0%
! ACAAATACAGTTTCTTCAAA+TGG - chr6_1:44470804-44470823 None:intergenic 25.0%
! GAAAAACTGTAATAACAGAT+TGG + chr6_1:44470907-44470926 Msa0886190:intron 25.0%
!!! TTTTATTTTATTTTGGCCCA+CGG + chr6_1:44471523-44471542 Msa0886190:intron 25.0%
! ATCTTGGAAAAATTCCATTT+CGG - chr6_1:44471888-44471907 None:intergenic 25.0%
!! AAATGGAATTTTTCCAAGAT+TGG + chr6_1:44471888-44471907 Msa0886190:intron 25.0%
! AAAACTATGGATTTGAGAAT+TGG + chr6_1:44471950-44471969 Msa0886190:intron 25.0%
!! TTATTGAATTTCTGGATTTC+TGG + chr6_1:44472089-44472108 Msa0886190:intron 25.0%
! GTATCAAGTTTATGAATTTC+TGG + chr6_1:44472140-44472159 Msa0886190:intron 25.0%
! AAACCATAAGTATGGTTTAA+TGG + chr6_1:44472252-44472271 Msa0886190:intron 25.0%
! AAACCATTAAACCATACTTA+TGG - chr6_1:44472258-44472277 None:intergenic 25.0%
!!! GTTTAATGGTTTTGATAGTT+AGG + chr6_1:44472266-44472285 Msa0886190:intron 25.0%
! AAACCATAAGTACGTTTAAA+TGG + chr6_1:44472367-44472386 Msa0886190:intron 25.0%
! AAACCATTTAAACGTACTTA+TGG - chr6_1:44472373-44472392 None:intergenic 25.0%
!! ATTTTTCTTTCACATACAAG+CGG - chr6_1:44472496-44472515 None:intergenic 25.0%
! AAACCATAAGTATGGTTAAA+TGG + chr6_1:44472733-44472752 Msa0886190:intron 25.0%
! AAACCATTTAACCATACTTA+TGG - chr6_1:44472739-44472758 None:intergenic 25.0%
!!! ATACTTTTTCTAGAAGTCAT+TGG + chr6_1:44472855-44472874 Msa0886190:intron 25.0%
!!! GTTTTCAAGTCATTTTTCAA+TGG - chr6_1:44472903-44472922 None:intergenic 25.0%
!! AATTACTACTAACCTTTTTC+TGG - chr6_1:44473141-44473160 None:intergenic 25.0%
!!! ACTCTTTTTGATTTAACTAC+TGG - chr6_1:44473367-44473386 None:intergenic 25.0%
!!! ATTTCAATTTTTGGTGAACT+TGG - chr6_1:44473502-44473521 None:intergenic 25.0%
! ATAATCTAAACAACAACTCA+TGG - chr6_1:44473770-44473789 None:intergenic 25.0%
! CTTTGTATATATGACTATGT+TGG - chr6_1:44473993-44474012 None:intergenic 25.0%
! GTTTGAGAATAAAGTGAAAT+CGG - chr6_1:44474090-44474109 None:intergenic 25.0%
! AACCTCTTGATAGATTTAAT+AGG + chr6_1:44474281-44474300 Msa0886190:intron 25.0%
! TTCCTATTAAATCTATCAAG+AGG - chr6_1:44474286-44474305 None:intergenic 25.0%
!! CTTTTGATTAGAACGTTTTC+AGG - chr6_1:44470390-44470409 None:intergenic 30.0%
! TCAATCAATTGAGTTGTGTA+AGG - chr6_1:44470570-44470589 None:intergenic 30.0%
! TTTTCTTTTTCCTCCCAAAA+AGG - chr6_1:44470600-44470619 None:intergenic 30.0%
!!! TCAACTTTTGAAGCAATTGA+AGG + chr6_1:44470767-44470786 Msa0886190:CDS 30.0%
AAACTGTAATAACAGATTGG+AGG + chr6_1:44470910-44470929 Msa0886190:intron 30.0%
GAATAATGTGTGACTCAATT+TGG - chr6_1:44470995-44471014 None:intergenic 30.0%
! ATATGTTAATAGGTTTCTGG+AGG - chr6_1:44471054-44471073 None:intergenic 30.0%
ATTTCATGATATGCAAGAGA+TGG + chr6_1:44471103-44471122 Msa0886190:CDS 30.0%
!! GGATATTCAACATTGACTTA+TGG + chr6_1:44471134-44471153 Msa0886190:CDS 30.0%
!!! TTACTCATGTTTTGACTCAA+AGG - chr6_1:44471293-44471312 None:intergenic 30.0%
TCTTTATCAGAATGAGAACT+CGG + chr6_1:44471384-44471403 Msa0886190:intron 30.0%
!!! TTTATTTTATTTTGGCCCAC+GGG + chr6_1:44471524-44471543 Msa0886190:intron 30.0%
! AATCAAAAAGTGTGTCTCTT+AGG - chr6_1:44471589-44471608 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG - chr6_1:44471660-44471679 None:intergenic 30.0%
CAAGAAATTTCTTGCTGAAT+CGG + chr6_1:44471850-44471869 Msa0886190:intron 30.0%
CAATTCCAAAAGAAACTATG+TGG + chr6_1:44472003-44472022 Msa0886190:intron 30.0%
CTGGATTTGTATCAAGTTTA+TGG + chr6_1:44472159-44472178 Msa0886190:intron 30.0%
GAATACTGAAACCATAAGTA+TGG + chr6_1:44472244-44472263 Msa0886190:intron 30.0%
AAACCAAAATAACTGCCTAA+TGG + chr6_1:44472410-44472429 Msa0886190:intron 30.0%
! AAACCATTAGGCAGTTATTT+TGG - chr6_1:44472416-44472435 None:intergenic 30.0%
GAATACTGAAACCATAAGTA+TGG + chr6_1:44472244-44472263 Msa0886190:intron 30.0%
AAACCAAAATAACTGCCTAA+TGG + chr6_1:44472410-44472429 Msa0886190:intron 30.0%
! AAACCATTAGGCAGTTATTT+TGG - chr6_1:44472416-44472435 None:intergenic 30.0%
AAACTGCTTCAACTTTCATT+TGG + chr6_1:44472919-44472938 Msa0886190:intron 30.0%
AATTTGAAGGAAAGTTGAAG+CGG - chr6_1:44473019-44473038 None:intergenic 30.0%
TTGTCTTGCATATCATGTAT+CGG - chr6_1:44473439-44473458 None:intergenic 30.0%
ATACATGATATGCAAGACAA+GGG + chr6_1:44473439-44473458 Msa0886190:intron 30.0%
! TTAGCTTGGTTGTGTTAAAT+GGG - chr6_1:44473563-44473582 None:intergenic 30.0%
! ATTAGCTTGGTTGTGTTAAA+TGG - chr6_1:44473564-44473583 None:intergenic 30.0%
AACACATATTGAGGCATATA+CGG - chr6_1:44473661-44473680 None:intergenic 30.0%
ATACTGAGGTGTATTTGAAT+GGG - chr6_1:44473704-44473723 None:intergenic 30.0%
! TTCTTGTGAATGAGTGTTTT+TGG - chr6_1:44473800-44473819 None:intergenic 30.0%
CTTTATAGTCATCCCTAATA+TGG + chr6_1:44473859-44473878 Msa0886190:intron 30.0%
ATTTGGCTATGACCATATTA+GGG - chr6_1:44473874-44473893 None:intergenic 30.0%
ATATTCAGTTGTAACCTTTC+TGG + chr6_1:44473905-44473924 Msa0886190:intron 30.0%
! GTAATACAAGTGTTGCATTA+TGG - chr6_1:44473971-44473990 None:intergenic 30.0%
ATATTAGGCTCAGCTATTAA+TGG - chr6_1:44474020-44474039 None:intergenic 30.0%
TATGAGCATATTCGCATATT+AGG - chr6_1:44474035-44474054 None:intergenic 30.0%
! TTTATGTACTTTCTGGTGAT+AGG - chr6_1:44474112-44474131 None:intergenic 30.0%
GTGGATATTTATGTACTTTC+TGG - chr6_1:44474119-44474138 None:intergenic 30.0%
ACATAAATATCCACATGAAC+TGG + chr6_1:44474125-44474144 Msa0886190:intron 30.0%
ATTTGGACAATAGATTGTTG+CGG + chr6_1:44474198-44474217 Msa0886190:intron 30.0%
CGGAACATGTTTATGAAATT+GGG + chr6_1:44474218-44474237 Msa0886190:intron 30.0%
GGAACATGTTTATGAAATTG+GGG + chr6_1:44474219-44474238 Msa0886190:intron 30.0%
! AGTTACTACTAACCTTTTTC+TGG + chr6_1:44474345-44474364 Msa0886190:intron 30.0%
!! TTAGAACGTTTTCAGGCTTT+AGG - chr6_1:44470383-44470402 None:intergenic 35.0%
TGTGTCTATATGTACAATCC+CGG + chr6_1:44470472-44470491 Msa0886190:CDS 35.0%
TTTAGAAGCTCTATAAGACC+GGG - chr6_1:44470493-44470512 None:intergenic 35.0%
! CTTTAGAAGCTCTATAAGAC+CGG - chr6_1:44470494-44470513 None:intergenic 35.0%
!! AGAGCTTCTAAAGTGATGTT+AGG + chr6_1:44470501-44470520 Msa0886190:CDS 35.0%
! ATTGATGACAGAACACCTTT+AGG + chr6_1:44470543-44470562 Msa0886190:CDS 35.0%
!! TGAGTATAAACCTTTTTGGG+AGG + chr6_1:44470587-44470606 Msa0886190:CDS 35.0%
AAGATGATGACTTAGAAGCT+TGG + chr6_1:44470619-44470638 Msa0886190:CDS 35.0%
AGATGATGACTTAGAAGCTT+GGG + chr6_1:44470620-44470639 Msa0886190:CDS 35.0%
CATGGCTATCAAGTATTCAA+TGG + chr6_1:44470675-44470694 Msa0886190:CDS 35.0%
!!! ACTTTTGAAGCAATTGAAGG+AGG + chr6_1:44470770-44470789 Msa0886190:CDS 35.0%
!!! CTTTTGAAGCAATTGAAGGA+GGG + chr6_1:44470771-44470790 Msa0886190:CDS 35.0%
TCAGCAATGAGAATTTGCAA+AGG + chr6_1:44470855-44470874 Msa0886190:intron 35.0%
TCCTTCAACATGTTCACAAT+GGG + chr6_1:44470950-44470969 Msa0886190:CDS 35.0%
ACACATTATTCTTGTTGCCA+TGG + chr6_1:44471004-44471023 Msa0886190:CDS 35.0%
TTATTCTTGTTGCCATGGTT+TGG + chr6_1:44471009-44471028 Msa0886190:CDS 35.0%
CAATTGAACTTTCCAAACCA+TGG - chr6_1:44471024-44471043 None:intergenic 35.0%
TGATATGCAAGAGATGGATA+TGG + chr6_1:44471109-44471128 Msa0886190:CDS 35.0%
AACACTTGTGATGCAATACA+TGG - chr6_1:44471165-44471184 None:intergenic 35.0%
ATTGCATCACAAGTGTTCAA+AGG + chr6_1:44471168-44471187 Msa0886190:CDS 35.0%
ATCACAAGTGTTCAAAGGAA+TGG + chr6_1:44471173-44471192 Msa0886190:CDS 35.0%
GAATGGAAATCTCACAAGTA+TGG + chr6_1:44471190-44471209 Msa0886190:CDS 35.0%
ACAATTCCATTGTTTGACAG+CGG + chr6_1:44471251-44471270 Msa0886190:intron 35.0%
CTTTATCAGAATGAGAACTC+GGG + chr6_1:44471385-44471404 Msa0886190:intron 35.0%
TTTATCAGAATGAGAACTCG+GGG + chr6_1:44471386-44471405 Msa0886190:intron 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr6_1:44471542-44471561 None:intergenic 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr6_1:44471543-44471562 None:intergenic 35.0%
! TCGAGATTTTCTCTCAATTC+TGG + chr6_1:44471621-44471640 Msa0886190:intron 35.0%
! AGATTTTCTCTCAATTCTGG+TGG + chr6_1:44471624-44471643 Msa0886190:intron 35.0%
!!! CTGGAAACCCTTATTTTGAT+AGG + chr6_1:44471650-44471669 Msa0886190:intron 35.0%
GCGACAAACCTATCAAAATA+AGG - chr6_1:44471661-44471680 None:intergenic 35.0%
GCGACAAACTTGTGAAAATA+GGG - chr6_1:44471690-44471709 None:intergenic 35.0%
AGCGACAAACTTGTGAAAAT+AGG - chr6_1:44471691-44471710 None:intergenic 35.0%
! GAACTTGTTCCATTCTATCT+AGG + chr6_1:44471714-44471733 Msa0886190:intron 35.0%
GTTAAATTTGTGACGCAGTA+CGG - chr6_1:44471765-44471784 None:intergenic 35.0%
ACCAAAGATGCCTAATCAAT+GGG + chr6_1:44471802-44471821 Msa0886190:intron 35.0%
! CTGTCTTTATCCCATTGATT+AGG - chr6_1:44471815-44471834 None:intergenic 35.0%
!! TTCTCGTTTTAGACCAATCT+TGG - chr6_1:44471904-44471923 None:intergenic 35.0%
! CTTCTCCACATAGTTTCTTT+TGG - chr6_1:44472011-44472030 None:intergenic 35.0%
CAAAAGAAACTATGTGGAGA+AGG + chr6_1:44472009-44472028 Msa0886190:intron 35.0%
TTGAAACAAACTTAGGCGTA+TGG + chr6_1:44472222-44472241 Msa0886190:intron 35.0%
CGATTGCAAAGGAAATTTGA+AGG - chr6_1:44474454-44474473 None:intergenic 35.0%
! CTAACCTTTTTCTGGATTGT+TGG - chr6_1:44474353-44474372 None:intergenic 35.0%
TTTATGAGTCCAGCTCTTAT+TGG - chr6_1:44473212-44473231 None:intergenic 35.0%
! ATGACATGTGAAGTTTTCAC+AGG - chr6_1:44473235-44473254 None:intergenic 35.0%
TGAAATCTTCTTCCGATTAG+AGG - chr6_1:44473283-44473302 None:intergenic 35.0%
GTGTCAAAGAAGAAAGCTTT+CGG - chr6_1:44473327-44473346 None:intergenic 35.0%
TGATTTAACTACTGGAGTGA+CGG - chr6_1:44473359-44473378 None:intergenic 35.0%
GATACATGATATGCAAGACA+AGG + chr6_1:44473438-44473457 Msa0886190:intron 35.0%
!! GGTTGTGTTAAATGGGTTTT+TGG - chr6_1:44473556-44473575 None:intergenic 35.0%
TGGTTGTCTTGATATTAGCT+TGG - chr6_1:44473577-44473596 None:intergenic 35.0%
AAGCTAATATCAAGACAACC+AGG + chr6_1:44473576-44473595 Msa0886190:intron 35.0%
GTCATTTAACTGTTGCAATG+AGG - chr6_1:44473637-44473656 None:intergenic 35.0%
ATTTGAATGGGATGTGTCAT+TGG - chr6_1:44473692-44473711 None:intergenic 35.0%
GATACTGAGGTGTATTTGAA+TGG - chr6_1:44473705-44473724 None:intergenic 35.0%
!! TTACCAGGATTTTGATACTG+AGG - chr6_1:44473718-44473737 None:intergenic 35.0%
GATTTGGCTATGACCATATT+AGG - chr6_1:44473875-44473894 None:intergenic 35.0%
GAATATCGTCTTCATGGATT+TGG - chr6_1:44473891-44473910 None:intergenic 35.0%
ACAACTGAATATCGTCTTCA+TGG - chr6_1:44473897-44473916 None:intergenic 35.0%
ATTATGGAACTCTGTTACTG+AGG - chr6_1:44473955-44473974 None:intergenic 35.0%
! ATGCTCATAACCATTTTCCA+AGG + chr6_1:44474046-44474065 Msa0886190:intron 35.0%
! TGCTCATAACCATTTTCCAA+GGG + chr6_1:44474047-44474066 Msa0886190:intron 35.0%
AGAAATGCATCATCGTACAA+CGG + chr6_1:44474170-44474189 Msa0886190:intron 35.0%
GCGGAACATGTTTATGAAAT+TGG + chr6_1:44474217-44474236 Msa0886190:intron 35.0%
GTTCATTACTCGACAGTGTT+TGG + chr6_1:44470314-44470333 Msa0886190:CDS 40.0%
TGAGTTGTGTAAGGACCTAA+AGG - chr6_1:44470561-44470580 None:intergenic 40.0%
AGAGGACTATGAAACTACGA+TGG + chr6_1:44470743-44470762 Msa0886190:CDS 40.0%
CTCCTTCAACATGTTCACAA+TGG + chr6_1:44470949-44470968 Msa0886190:CDS 40.0%
TCCCATTGTGAACATGTTGA+AGG - chr6_1:44470954-44470973 None:intergenic 40.0%
TTCAACATGTTCACAATGGG+AGG + chr6_1:44470953-44470972 Msa0886190:CDS 40.0%
AATGGGAGGATATAGAGCTT+TGG + chr6_1:44470967-44470986 Msa0886190:CDS 40.0%
ATGCAAGAGATGGATATGGT+AGG + chr6_1:44471113-44471132 Msa0886190:CDS 40.0%
ATTTGAATCCACCTCATCAG+AGG - chr6_1:44471222-44471241 None:intergenic 40.0%
CATTTCATTCAATGGGATCC+AGG + chr6_1:44471350-44471369 Msa0886190:intron 40.0%
AGCGCTAAACCTAGATAGAA+TGG - chr6_1:44471726-44471745 None:intergenic 40.0%
CACCAAAGATGCCTAATCAA+TGG + chr6_1:44471801-44471820 Msa0886190:intron 40.0%
! TCCCATTGATTAGGCATCTT+TGG - chr6_1:44471806-44471825 None:intergenic 40.0%
CAATGGGATAAAGACAGTTG+TGG + chr6_1:44471818-44471837 Msa0886190:intron 40.0%
TTTCTTGCTGAATCGGAGAA+TGG + chr6_1:44471857-44471876 Msa0886190:intron 40.0%
! TGGTCTAAAACGAGAAAGCA+TGG + chr6_1:44471908-44471927 Msa0886190:intron 40.0%
! GGTCTAAAACGAGAAAGCAT+GGG + chr6_1:44471909-44471928 Msa0886190:intron 40.0%
AAGTTGAAGGGAAGTTGAAG+CGG - chr6_1:44472947-44472966 None:intergenic 40.0%
GGTTGCAAAGGAAAGTTGAA+GGG - chr6_1:44474433-44474452 None:intergenic 40.0%
GTTGCAAAGGAAAGTTGAAG+CGG - chr6_1:44474434-44474453 None:intergenic 40.0%
TCAAGAGTGAATGGTTGCAA+AGG - chr6_1:44474421-44474440 None:intergenic 40.0%
!! AAGCGGTTTTCAAGAGTGAA+TGG - chr6_1:44473002-44473021 None:intergenic 40.0%
GAAAGTTGAAGCGATTGCAA+AGG - chr6_1:44474443-44474462 None:intergenic 40.0%
TCAAGAGTGAATGGTTGCAA+AGG - chr6_1:44474421-44474440 None:intergenic 40.0%
AGATGGAACTCAAGAGTGAA+TGG - chr6_1:44474412-44474431 None:intergenic 40.0%
GATAGAGTTCTCTTGTGTAC+AGG - chr6_1:44474389-44474408 None:intergenic 40.0%
GAGAACTCTATCTGTTGCTA+TGG + chr6_1:44473105-44473124 Msa0886190:intron 40.0%
!! TTTGGTGAACTTGGTGTCAA+GGG - chr6_1:44473493-44473512 None:intergenic 40.0%
!!! TTTTGGTGAACTTGGTGTCA+AGG - chr6_1:44473494-44473513 None:intergenic 40.0%
ACAACCAGGTAGATCTTCTA+TGG + chr6_1:44473590-44473609 Msa0886190:intron 40.0%
CAACCAGGTAGATCTTCTAT+GGG + chr6_1:44473591-44473610 Msa0886190:intron 40.0%
ACACCTCAGTATCAAAATCC+TGG + chr6_1:44473712-44473731 Msa0886190:intron 40.0%
! TCAAAATCCTGGTAACGACT+TGG + chr6_1:44473723-44473742 Msa0886190:intron 40.0%
! GTTGTAACCTTTCTGGTGAT+AGG + chr6_1:44473912-44473931 Msa0886190:intron 40.0%
CTCTGTTACTGAGGAAGTTA+AGG - chr6_1:44473946-44473965 None:intergenic 40.0%
CCTTCATTACCCTTGGAAAA+TGG - chr6_1:44474059-44474078 None:intergenic 40.0%
! CCATTTTCCAAGGGTAATGA+AGG + chr6_1:44474056-44474075 Msa0886190:intron 40.0%
TTTGACACCTTCATTACCCT+TGG - chr6_1:44474066-44474085 None:intergenic 40.0%
ATATCCACATGAACTGGTTG+TGG + chr6_1:44474131-44474150 Msa0886190:intron 40.0%
! TTTTCCACAACCAGTTCATG+TGG - chr6_1:44474138-44474157 None:intergenic 40.0%
CATGAACTGGTTGTGGAAAA+TGG + chr6_1:44474138-44474157 Msa0886190:intron 40.0%
ATCGTACAACGGATGAGATT+TGG + chr6_1:44474181-44474200 Msa0886190:intron 40.0%
TTTCTTGCGCTTGCAAATCA+TGG - chr6_1:44474262-44474281 None:intergenic 40.0%
GGCTACAACAATCCAGAAAA+AGG - chr6_1:44474360-44474379 None:intergenic 40.0%
GAGAACTCTATCTGTTGCTA+TGG - chr6_1:44473105-44473124 None:intergenic 40.0%
GATAGAGTTCTCTTGTGTAC+AGG + chr6_1:44474389-44474408 Msa0886190:intron 40.0%
AGATGGAACTCAAGAGTGAA+TGG + chr6_1:44474412-44474431 Msa0886190:CDS 40.0%
TCAAGAGTGAATGGTTGCAA+AGG + chr6_1:44474421-44474440 Msa0886190:CDS 40.0%
GAAAGTTGAAGCGATTGCAA+AGG + chr6_1:44474443-44474462 Msa0886190:CDS 40.0%
CATTACTCGACAGTGTTTGG+AGG + chr6_1:44470317-44470336 Msa0886190:CDS 45.0%
ACAGATTGGAGGACTCACAA+AGG + chr6_1:44470921-44470940 Msa0886190:intron 45.0%
TTCATTCAATGGGATCCAGG+AGG + chr6_1:44471353-44471372 Msa0886190:intron 45.0%
TCATTCAATGGGATCCAGGA+GGG + chr6_1:44471354-44471373 Msa0886190:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+TGG + chr6_1:44471631-44471650 Msa0886190:intron 45.0%
GGAGAATGGCAATACCGAAA+TGG + chr6_1:44471871-44471890 Msa0886190:intron 45.0%
! ACGAGAAAGCATGGGAAGAA+TGG + chr6_1:44471917-44471936 Msa0886190:intron 45.0%
AAAGCATGGGAAGAATGGCA+AGG + chr6_1:44471922-44471941 Msa0886190:intron 45.0%
TGGCAAGGCTGCAAAAACTA+TGG + chr6_1:44471937-44471956 Msa0886190:intron 45.0%
CGGTTGCAAAGGAAAGTTGA+AGG - chr6_1:44472960-44472979 None:intergenic 45.0%
GAAAGTTGAAGCGGTTGCAA+AGG - chr6_1:44472971-44472990 None:intergenic 45.0%
GTTCTCTTGTGTACAGGAGA+TGG - chr6_1:44474395-44474414 None:intergenic 45.0%
GGCTCCAACAATCCAGAAAA+AGG + chr6_1:44473126-44473145 Msa0886190:intron 45.0%
TTCCACATGCCAATAAGAGC+TGG + chr6_1:44473200-44473219 Msa0886190:intron 45.0%
TGTATCGGAGCATGGAAGAA+TGG - chr6_1:44473424-44473443 None:intergenic 45.0%
GCATATCATGTATCGGAGCA+TGG - chr6_1:44473432-44473451 None:intergenic 45.0%
! AATGGGATGTGTCATTGGTG+GGG - chr6_1:44473687-44473706 None:intergenic 45.0%
! GAATGGGATGTGTCATTGGT+GGG - chr6_1:44473688-44473707 None:intergenic 45.0%
! TGAATGGGATGTGTCATTGG+TGG - chr6_1:44473689-44473708 None:intergenic 45.0%
TGATATGCCAAGTCGTTACC+AGG - chr6_1:44473733-44473752 None:intergenic 45.0%
! GTAACCTTTCTGGTGATAGG+AGG + chr6_1:44473915-44473934 Msa0886190:intron 45.0%
CATTCCTCCTATCACCAGAA+AGG - chr6_1:44473922-44473941 None:intergenic 45.0%
GTTCTCTTGTGTACAGGAGA+TGG + chr6_1:44474395-44474414 Msa0886190:intron 45.0%
!!! AATTTAATTTTACTAAAATT+AGG + chr6_1:44472330-44472349 Msa0886190:intron 5.0%
!!! ATTTAATTTTACTAAAATTA+GGG + chr6_1:44472331-44472350 Msa0886190:intron 5.0%
TATGGCTCCTTCCTCTGATG+AGG + chr6_1:44471208-44471227 Msa0886190:CDS 50.0%
GAATCCACCTCATCAGAGGA+AGG - chr6_1:44471218-44471237 None:intergenic 50.0%
GAGATGCCGCTGTCAAACAA+TGG - chr6_1:44471260-44471279 None:intergenic 50.0%
ATAAAGAGCTTCCACCCTCC+TGG - chr6_1:44471371-44471390 None:intergenic 50.0%
! GTCGAGTTCTTTAGAGGTGG+AGG + chr6_1:44471408-44471427 Msa0886190:intron 50.0%
TGGAGGAAACTGATGCAGGA+GGG + chr6_1:44471425-44471444 Msa0886190:intron 50.0%
GTCCAGCTCTTATTGGCATG+TGG - chr6_1:44473205-44473224 None:intergenic 50.0%
!! ACTGGAGTGACGGATGAGAT+TGG - chr6_1:44473349-44473368 None:intergenic 50.0%
!! AACTTGGTGTCAAGGGCTCA+TGG - chr6_1:44473486-44473505 None:intergenic 50.0%
TCGCCCATAGAAGATCTACC+TGG - chr6_1:44473597-44473616 None:intergenic 50.0%
GGTAGATCTTCTATGGGCGA+AGG + chr6_1:44473597-44473616 Msa0886190:intron 50.0%
GTGGGGAGGAACACATATTG+AGG - chr6_1:44473670-44473689 None:intergenic 50.0%
TTCAATGGGATCCAGGAGGG+TGG + chr6_1:44471357-44471376 Msa0886190:intron 55.0%
CTCGGGGTCGAGTTCTTTAG+AGG + chr6_1:44471402-44471421 Msa0886190:intron 55.0%
! GGGGTCGAGTTCTTTAGAGG+TGG + chr6_1:44471405-44471424 Msa0886190:intron 55.0%
GAGGTGGAGGAAACTGATGC+AGG + chr6_1:44471421-44471440 Msa0886190:intron 55.0%
GTGGAGGAAACTGATGCAGG+AGG + chr6_1:44471424-44471443 Msa0886190:intron 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr6_1:44471755-44471774 None:intergenic 55.0%
GGCTCCTTCCTCTGATGAGG+TGG + chr6_1:44471211-44471230 Msa0886190:intron 60.0%
! GTGACGCAGTACGGAAGCGT+AGG - chr6_1:44471756-44471775 None:intergenic 60.0%
! GGGATGTGTCATTGGTGGGG+AGG - chr6_1:44473684-44473703 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 44470309 44474473 44470309 ID=Msa0886190;Name=Msa0886190
chr6_1 mRNA 44470309 44474473 44470309 ID=Msa0886190-mRNA-1;Parent=Msa0886190;Name=Msa0886190-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.33|1|1|3|0|296
chr6_1 exon 44470309 44470831 44470309 ID=Msa0886190-mRNA-1:exon:9531;Parent=Msa0886190-mRNA-1
chr6_1 exon 44470925 44471229 44470925 ID=Msa0886190-mRNA-1:exon:9532;Parent=Msa0886190-mRNA-1
chr6_1 exon 44474411 44474473 44474411 ID=Msa0886190-mRNA-1:exon:9533;Parent=Msa0886190-mRNA-1
chr6_1 CDS 44470309 44470831 44470309 ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1
chr6_1 CDS 44470925 44471229 44470925 ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1
chr6_1 CDS 44474411 44474473 44474411 ID=Msa0886190-mRNA-1:cds;Parent=Msa0886190-mRNA-1
Gene Sequence

>Msa0886190

TTGCAGTTCATTACTCGACAGTGTTTGGAGGCATTGCAATATTTACATAACTTGGGAATTGTTCACTGTGACCTAAAGCCTGAAAACGTTCTAATCAAAAGTTACAAAAAATGTGAAATCAAAATTATTGATCTTGGAAGCAGTTGCTTTAAAACAGACAATTTGTGTCTATATGTACAATCCCGGTCTTATAGAGCTTCTAAAGTGATGTTAGGCCTTCAATATGATGAAAAAATTGATGACAGAACACCTTTAGGTCCTTACACAACTCAATTGATTGAGTATAAACCTTTTTGGGAGGAAAAAGAAAAAGATGATGACTTAGAAGCTTGGGTTGAGACTACAAAACAATCAAAGATGAAAATACATGGCTATCAAGTATTCAATGGATGTAATCAACAACAGTTGCTGTCAAATATATTTTCTATTGTGTTAGAGGACTATGAAACTACGATGGTTCAACTTTTGAAGCAATTGAAGGAGGGTCAGAAGCCATTTGAAGAAACTGTATTTGTTTTAAAGGATTGGAGGACTCACAAAGGAAAGTCTCCTTCAACATGTTCACAATGGGAGGATATAGAGCTTTGGTGCCAAATTGAGTCACACATTATTCTTGTTGCCATGGTTTGGAAAGTTCAATTGTGTGCTGCCTCCAGAAACCTATTAACATATTATGGAAACATAGACAATGCACTTAAGCTATTTCATGATATGCAAGAGATGGATATGGTAGGATATTCAACATTGACTTATGGATGTTCCATGTATTGCATCACAAGTGTTCAAAGGAATGGAAATCTCACAAGTATGGCTCCTTCCTCTGATGAGGAGATGGAACTCAAGAGTGAATGGTTGCAAAGGAAAGTTGAAGCGATTGCAAAGGAAATTTGA

Protein sequence

>Msa0886190

LQFITRQCLEALQYLHNLGIVHCDLKPENVLIKSYKKCEIKIIDLGSSCFKTDNLCLYVQSRSYRASKVMLGLQYDEKIDDRTPLGPYTTQLIEYKPFWEEKEKDDDLEAWVETTKQSKMKIHGYQVFNGCNQQQLLSNIFSIVLEDYETTMVQLLKQLKEGQKPFEETVFVLKDWRTHKGKSPSTCSQWEDIELWCQIESHIILVAMVWKVQLCAASRNLLTYYGNIDNALKLFHDMQEMDMVGYSTLTYGCSMYCITSVQRNGNLTSMAPSSDEEMELKSEWLQRKVEAIAKEI*