Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886250 | XP_004516775.1 | 37.589 | 282 | 125 | 6 | 1 | 275 | 14 | 251 | 2.23e-44 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886250 | sp|Q5XEM9|ALFL5_ARATH | 70.000 | 60 | 17 | 1 | 288 | 347 | 202 | 260 | 5.10e-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886250 | A0A1S2Z860 | 37.589 | 282 | 125 | 6 | 1 | 275 | 14 | 251 | 1.07e-44 | 170 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886250 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886250 | MtrunA17_Chr6g0457221 | 55.714 | 140 | 58 | 2 | 26 | 165 | 44 | 179 | 3.83e-40 | 150 |
| Msa0886250 | MtrunA17_Chr6g0457161 | 52.258 | 155 | 67 | 3 | 7 | 158 | 31 | 181 | 1.06e-38 | 145 |
| Msa0886250 | MtrunA17_Chr8g0343441 | 79.012 | 81 | 17 | 0 | 267 | 347 | 176 | 256 | 3.48e-31 | 118 |
| Msa0886250 | MtrunA17_Chr2g0329821 | 75.862 | 58 | 14 | 0 | 289 | 346 | 193 | 250 | 3.99e-26 | 104 |
| Msa0886250 | MtrunA17_Chr1g0150821 | 76.364 | 55 | 12 | 1 | 293 | 347 | 210 | 263 | 1.05e-23 | 98.6 |
| Msa0886250 | MtrunA17_Chr2g0300241 | 68.333 | 60 | 16 | 2 | 290 | 347 | 195 | 253 | 1.33e-21 | 92.4 |
| Msa0886250 | MtrunA17_Chr4g0076771 | 69.231 | 52 | 16 | 0 | 292 | 343 | 201 | 252 | 4.25e-21 | 91.3 |
| Msa0886250 | MtrunA17_Chr4g0006381 | 69.091 | 55 | 16 | 1 | 293 | 347 | 189 | 242 | 3.06e-20 | 88.6 |
| Msa0886250 | MtrunA17_Chr7g0242511 | 65.455 | 55 | 18 | 1 | 293 | 347 | 189 | 242 | 6.58e-19 | 84.7 |
| Msa0886250 | MtrunA17_Chr5g0402951 | 34.483 | 116 | 67 | 2 | 23 | 135 | 160 | 269 | 9.51e-14 | 71.6 |
| Msa0886250 | MtrunA17_Chr5g0402961 | 39.175 | 97 | 56 | 1 | 23 | 119 | 162 | 255 | 5.16e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886250 | AT5G38690.2 | 30.996 | 271 | 162 | 5 | 26 | 275 | 30 | 296 | 2.58e-29 | 119 |
| Msa0886250 | AT5G38690.1 | 30.996 | 271 | 162 | 5 | 26 | 275 | 30 | 296 | 2.58e-29 | 119 |
| Msa0886250 | AT1G67780.2 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.54e-28 | 115 |
| Msa0886250 | AT1G67780.1 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.54e-28 | 115 |
| Msa0886250 | AT1G67270.1 | 48.246 | 114 | 56 | 1 | 9 | 119 | 5 | 118 | 1.24e-25 | 107 |
| Msa0886250 | AT5G20510.2 | 70.000 | 60 | 17 | 1 | 288 | 347 | 161 | 219 | 2.82e-24 | 99.4 |
| Msa0886250 | AT5G20510.1 | 70.000 | 60 | 17 | 1 | 288 | 347 | 202 | 260 | 5.19e-24 | 99.8 |
| Msa0886250 | AT3G42790.1 | 72.881 | 59 | 15 | 1 | 288 | 346 | 192 | 249 | 9.29e-24 | 98.6 |
| Msa0886250 | AT2G02470.1 | 74.545 | 55 | 13 | 1 | 293 | 347 | 203 | 256 | 4.19e-23 | 97.1 |
| Msa0886250 | AT2G02470.2 | 74.545 | 55 | 13 | 1 | 293 | 347 | 194 | 247 | 5.32e-23 | 96.7 |
| Msa0886250 | AT5G26210.1 | 75.000 | 56 | 13 | 1 | 291 | 346 | 200 | 254 | 1.85e-22 | 95.1 |
| Msa0886250 | AT1G14510.1 | 68.519 | 54 | 17 | 0 | 293 | 346 | 198 | 251 | 2.04e-21 | 92.4 |
| Msa0886250 | AT5G05610.2 | 62.500 | 56 | 21 | 0 | 288 | 343 | 183 | 238 | 4.72e-19 | 85.5 |
| Msa0886250 | AT5G05610.1 | 62.500 | 56 | 21 | 0 | 288 | 343 | 183 | 238 | 4.72e-19 | 85.5 |
| Msa0886250 | AT3G11200.1 | 61.538 | 52 | 20 | 0 | 288 | 339 | 188 | 239 | 9.85e-18 | 82.0 |
| Msa0886250 | AT3G11200.2 | 61.538 | 52 | 20 | 0 | 288 | 339 | 175 | 226 | 1.45e-17 | 81.3 |
| Msa0886250 | AT2G23530.1 | 39.252 | 107 | 54 | 3 | 18 | 119 | 153 | 253 | 1.80e-13 | 71.6 |
| Msa0886250 | AT4G37110.3 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 6.12e-13 | 69.3 |
| Msa0886250 | AT4G37110.4 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 6.12e-13 | 69.3 |
| Msa0886250 | AT4G37110.2 | 33.846 | 130 | 82 | 3 | 23 | 152 | 165 | 290 | 1.50e-12 | 68.6 |
| Msa0886250 | AT4G37110.1 | 33.846 | 130 | 82 | 3 | 23 | 152 | 178 | 303 | 2.00e-12 | 68.2 |
Find 93 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6_1:-44616824 | Msa0886250:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6_1:+44617126 | None:intergenic |
| TTTATGATGGAGTTTGATTT+AGG | 0.207910 | 6_1:+44618000 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6_1:-44616804 | Msa0886250:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6_1:+44616472 | None:intergenic |
| TGAATTGGTGTTGGATTTAG+AGG | 0.320517 | 6_1:+44617916 | None:intergenic |
| TTATGATGGAGTTTGATTTA+GGG | 0.355183 | 6_1:+44618001 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6_1:-44617139 | Msa0886250:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6_1:-44616789 | Msa0886250:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6_1:+44616754 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6_1:+44616382 | None:intergenic |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6_1:+44617423 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6_1:+44617402 | None:intergenic |
| TAATTGATAATAATGCTATA+AGG | 0.408256 | 6_1:-44616728 | Msa0886250:CDS |
| GGCAATGGGTACCGAGGATT+GGG | 0.413229 | 6_1:-44616883 | Msa0886250:CDS |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6_1:-44617124 | Msa0886250:CDS |
| TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6_1:+44616705 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6_1:-44616884 | Msa0886250:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6_1:-44617123 | Msa0886250:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6_1:-44617150 | Msa0886250:CDS |
| GTTCGTATAGCGAAGGCATC+TGG | 0.430043 | 6_1:-44617231 | Msa0886250:CDS |
| CATGTTGTTGCAAGTGGTGG+TGG | 0.430941 | 6_1:+44617885 | None:intergenic |
| TGGGGTGAGCAGCGATGGAA+GGG | 0.432655 | 6_1:+44617949 | None:intergenic |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6_1:-44616823 | Msa0886250:CDS |
| GGAATATATTGAATTGGTGT+TGG | 0.437660 | 6_1:+44617907 | None:intergenic |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6_1:+44616313 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6_1:-44617261 | Msa0886250:CDS |
| CTGGGGTGAGCAGCGATGGA+AGG | 0.443550 | 6_1:+44617948 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.452075 | 6_1:-44617659 | Msa0886250:intron |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6_1:-44616406 | Msa0886250:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6_1:+44616277 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6_1:-44616390 | Msa0886250:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6_1:-44617196 | Msa0886250:CDS |
| GTGGTGGGAATATATTGAAT+TGG | 0.479017 | 6_1:+44617901 | None:intergenic |
| TATGATGGAGTTTGATTTAG+GGG | 0.479970 | 6_1:+44618002 | None:intergenic |
| GTGAGTCAAACCTGTCTAAG+AGG | 0.480314 | 6_1:+44617569 | None:intergenic |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6_1:-44617149 | Msa0886250:CDS |
| GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6_1:-44616684 | Msa0886250:CDS |
| ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6_1:-44616661 | Msa0886250:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6_1:-44616327 | Msa0886250:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6_1:+44616755 | None:intergenic |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6_1:-44616769 | Msa0886250:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6_1:-44617606 | Msa0886250:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6_1:-44617260 | Msa0886250:CDS |
| ATGATGGAGTTTGATTTAGG+GGG | 0.519150 | 6_1:+44618003 | None:intergenic |
| GGGGTGAGCAGCGATGGAAG+GGG | 0.519456 | 6_1:+44617950 | None:intergenic |
| CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6_1:+44616897 | None:intergenic |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6_1:+44617831 | None:intergenic |
| GACAAAATTTGCTAGGAACA+CGG | 0.526762 | 6_1:+44617803 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6_1:+44617401 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6_1:+44616898 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.532955 | 6_1:-44617835 | Msa0886250:CDS |
| CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6_1:-44616898 | Msa0886250:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6_1:-44616476 | Msa0886250:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6_1:-44617459 | Msa0886250:intron |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6_1:-44616363 | Msa0886250:CDS |
| GAGGAAGATGAAGATGAATA+CGG | 0.542593 | 6_1:-44616442 | Msa0886250:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6_1:-44616354 | Msa0886250:CDS |
| GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6_1:-44616706 | Msa0886250:CDS |
| ACAAAATTTGCTAGGAACAC+GGG | 0.544351 | 6_1:+44617804 | None:intergenic |
| GGGTGAGCAGCGATGGAAGG+GGG | 0.548394 | 6_1:+44617951 | None:intergenic |
| TTTCATGTTGTTGCAAGTGG+TGG | 0.560875 | 6_1:+44617882 | None:intergenic |
| CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6_1:-44616897 | Msa0886250:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6_1:-44616326 | Msa0886250:CDS |
| AACATTTCTAGCCCAATCCT+CGG | 0.571430 | 6_1:+44616872 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6_1:+44616314 | None:intergenic |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6_1:+44617830 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6_1:+44616338 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6_1:+44616837 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6_1:-44616355 | Msa0886250:CDS |
| ATGTTGTTGCAAGTGGTGGT+GGG | 0.579690 | 6_1:+44617886 | None:intergenic |
| GGATTTCATGTTGTTGCAAG+TGG | 0.580645 | 6_1:+44617879 | None:intergenic |
| GAATTGGTGTTGGATTTAGA+GGG | 0.594166 | 6_1:+44617917 | None:intergenic |
| ACCTGGTGACAAAATTTGCT+AGG | 0.596109 | 6_1:+44617796 | None:intergenic |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6_1:+44616831 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6_1:-44616262 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6_1:+44616794 | None:intergenic |
| GGCACTTGTTCGTATAGCGA+AGG | 0.607034 | 6_1:-44617238 | Msa0886250:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.609714 | 6_1:-44617465 | Msa0886250:intron |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6_1:-44617118 | Msa0886250:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6_1:-44616819 | Msa0886250:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6_1:-44617410 | Msa0886250:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6_1:-44616461 | Msa0886250:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6_1:-44617259 | Msa0886250:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6_1:+44617249 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6_1:-44616889 | Msa0886250:CDS |
| ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6_1:-44616904 | Msa0886250:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.685462 | 6_1:+44617246 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6_1:+44616383 | None:intergenic |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6_1:-44616418 | Msa0886250:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6_1:-44616482 | Msa0886250:CDS |
| GAATACGGAGAGAACTCATG+TGG | 0.703470 | 6_1:-44616427 | Msa0886250:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6_1:+44616315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTATTTTTTCACT+TGG | - | chr6_1:44616601-44616620 | Msa0886250:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6_1:44616932-44616951 | Msa0886250:intron | 15.0% |
| !!! | TAATTGATAATAATGCTATA+AGG | - | chr6_1:44617554-44617573 | Msa0886250:intron | 15.0% |
| !!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6_1:44617776-44617795 | Msa0886250:intron | 15.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6_1:44616744-44616763 | Msa0886250:CDS | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6_1:44616852-44616871 | Msa0886250:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6_1:44617459-44617478 | Msa0886250:intron | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6_1:44617689-44617708 | Msa0886250:intron | 20.0% |
| !! | TTATGATGGAGTTTGATTTA+GGG | + | chr6_1:44616284-44616303 | None:intergenic | 25.0% |
| !! | TTTATGATGGAGTTTGATTT+AGG | + | chr6_1:44616285-44616304 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6_1:44616632-44616651 | None:intergenic | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6_1:44616938-44616957 | Msa0886250:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6_1:44617113-44617132 | Msa0886250:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6_1:44617114-44617133 | Msa0886250:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6_1:44617132-44617151 | Msa0886250:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6_1:44617133-44617152 | Msa0886250:CDS | 25.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6_1:44617159-44617178 | None:intergenic | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6_1:44617158-44617177 | Msa0886250:CDS | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6_1:44617159-44617178 | Msa0886250:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6_1:44617230-44617249 | Msa0886250:CDS | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6_1:44617458-44617477 | Msa0886250:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6_1:44617491-44617510 | None:intergenic | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6_1:44617493-44617512 | Msa0886250:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6_1:44617688-44617707 | Msa0886250:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6_1:44617738-44617757 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6_1:44617736-44617755 | Msa0886250:intron | 25.0% |
| !! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6_1:44617782-44617801 | Msa0886250:intron | 25.0% |
| ! | TATGATGGAGTTTGATTTAG+GGG | + | chr6_1:44616283-44616302 | None:intergenic | 30.0% |
| !! | GTTTATGGATTTTGTTTGAG+GGG | + | chr6_1:44616312-44616331 | None:intergenic | 30.0% |
| !! | GGTTTATGGATTTTGTTTGA+GGG | + | chr6_1:44616313-44616332 | None:intergenic | 30.0% |
| ! | ATTTAGAGGGATGATTTTCT+GGG | + | chr6_1:44616355-44616374 | None:intergenic | 30.0% |
| GGAATATATTGAATTGGTGT+TGG | + | chr6_1:44616378-44616397 | None:intergenic | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6_1:44616815-44616834 | Msa0886250:CDS | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6_1:44616816-44616835 | Msa0886250:CDS | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6_1:44616817-44616836 | Msa0886250:CDS | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6_1:44616995-44617014 | Msa0886250:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6_1:44617201-44617220 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6_1:44617202-44617221 | None:intergenic | 30.0% | |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6_1:44617336-44617355 | Msa0886250:intron | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6_1:44617454-44617473 | None:intergenic | 30.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6_1:44617463-44617482 | Msa0886250:intron | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6_1:44617530-44617549 | None:intergenic | 30.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6_1:44617621-44617640 | Msa0886250:CDS | 30.0% | |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6_1:44617625-44617644 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6_1:44617693-44617712 | Msa0886250:intron | 30.0% |
| ATGACATCCTTAATACTTGT+TGG | - | chr6_1:44617728-44617747 | Msa0886250:intron | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6_1:44617902-44617921 | None:intergenic | 30.0% | |
| ! | ATGATGGAGTTTGATTTAGG+GGG | + | chr6_1:44616282-44616301 | None:intergenic | 35.0% |
| !! | GGGTTTATGGATTTTGTTTG+AGG | + | chr6_1:44616314-44616333 | None:intergenic | 35.0% |
| ! | TTTAGAGGGATGATTTTCTG+GGG | + | chr6_1:44616354-44616373 | None:intergenic | 35.0% |
| ! | GATTTAGAGGGATGATTTTC+TGG | + | chr6_1:44616356-44616375 | None:intergenic | 35.0% |
| !! | GAATTGGTGTTGGATTTAGA+GGG | + | chr6_1:44616368-44616387 | None:intergenic | 35.0% |
| !! | TGAATTGGTGTTGGATTTAG+AGG | + | chr6_1:44616369-44616388 | None:intergenic | 35.0% |
| ! | GTGGTGGGAATATATTGAAT+TGG | + | chr6_1:44616384-44616403 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6_1:44616427-44616446 | None:intergenic | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6_1:44616481-44616500 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6_1:44616482-44616501 | None:intergenic | 35.0% |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6_1:44616506-44616525 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6_1:44616658-44616677 | Msa0886250:CDS | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6_1:44616671-44616690 | None:intergenic | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6_1:44616676-44616695 | Msa0886250:CDS | 35.0% |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6_1:44616823-44616842 | Msa0886250:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6_1:44616862-44616881 | None:intergenic | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6_1:44617101-44617120 | Msa0886250:intron | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6_1:44617143-44617162 | Msa0886250:CDS | 35.0% | |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6_1:44617339-44617358 | Msa0886250:intron | 35.0% |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6_1:44617531-44617550 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6_1:44617616-44617635 | None:intergenic | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6_1:44617617-44617636 | None:intergenic | 35.0% |
| GAGGAAGATGAAGATGAATA+CGG | - | chr6_1:44617840-44617859 | Msa0886250:CDS | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6_1:44617903-44617922 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6_1:44617916-44617935 | Msa0886250:five_prime_UTR | 35.0% |
| TGATATTCACACATTTCCCA+TGG | + | chr6_1:44617947-44617966 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6_1:44618008-44618027 | None:intergenic | 35.0% |
| !! | TTAGGGGGTGGATTTGATTT+TGG | + | chr6_1:44616267-44616286 | None:intergenic | 40.0% |
| !! | TTTGAGGGGTCGTTTTATGA+TGG | + | chr6_1:44616298-44616317 | None:intergenic | 40.0% |
| TTTCATGTTGTTGCAAGTGG+TGG | + | chr6_1:44616403-44616422 | None:intergenic | 40.0% | |
| GGATTTCATGTTGTTGCAAG+TGG | + | chr6_1:44616406-44616425 | None:intergenic | 40.0% | |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6_1:44616440-44616459 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6_1:44616441-44616460 | None:intergenic | 40.0% |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6_1:44616455-44616474 | None:intergenic | 40.0% | |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6_1:44616485-44616504 | Msa0886250:CDS | 40.0% |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6_1:44616489-44616508 | None:intergenic | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6_1:44616623-44616642 | Msa0886250:CDS | 40.0% |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6_1:44616703-44616722 | Msa0886250:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6_1:44616884-44616903 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6_1:44616907-44616926 | Msa0886250:CDS | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6_1:44617086-44617105 | Msa0886250:intron | 40.0% | |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6_1:44617164-44617183 | Msa0886250:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6_1:44617167-44617186 | Msa0886250:CDS | 40.0% |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6_1:44617378-44617397 | Msa0886250:intron | 40.0% | |
| !! | AACATTTCTAGCCCAATCCT+CGG | + | chr6_1:44617413-44617432 | None:intergenic | 40.0% |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6_1:44617448-44617467 | None:intergenic | 40.0% |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6_1:44617513-44617532 | Msa0886250:intron | 40.0% | |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6_1:44617580-44617599 | None:intergenic | 40.0% |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6_1:44617598-44617617 | Msa0886250:CDS | 40.0% | |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6_1:44617800-44617819 | Msa0886250:CDS | 40.0% |
| AATATGGCCCTGATGAATTC+TGG | - | chr6_1:44617892-44617911 | Msa0886250:five_prime_UTR | 40.0% | |
| ! | ATGGAGTTTGATTTAGGGGG+TGG | + | chr6_1:44616279-44616298 | None:intergenic | 45.0% |
| ATGTTGTTGCAAGTGGTGGT+GGG | + | chr6_1:44616399-44616418 | None:intergenic | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6_1:44616439-44616458 | None:intergenic | 45.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6_1:44616447-44616466 | Msa0886250:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6_1:44616454-44616473 | None:intergenic | 45.0% | |
| GTGAGTCAAACCTGTCTAAG+AGG | + | chr6_1:44616716-44616735 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6_1:44616883-44616902 | None:intergenic | 45.0% | |
| CCATTGCCACACAATGAGTT+GGG | + | chr6_1:44617387-44617406 | None:intergenic | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6_1:44617385-44617404 | Msa0886250:intron | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6_1:44617478-44617497 | Msa0886250:intron | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6_1:44617576-44617595 | Msa0886250:intron | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6_1:44617806-44617825 | Msa0886250:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6_1:44617813-44617832 | None:intergenic | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6_1:44617821-44617840 | Msa0886250:CDS | 45.0% | |
| GAATACGGAGAGAACTCATG+TGG | - | chr6_1:44617855-44617874 | Msa0886250:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6_1:44617919-44617938 | Msa0886250:five_prime_UTR | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6_1:44617927-44617946 | Msa0886250:five_prime_UTR | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6_1:44617928-44617947 | Msa0886250:five_prime_UTR | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6_1:44617956-44617975 | Msa0886250:five_prime_UTR | 45.0% | |
| CATGTTGTTGCAAGTGGTGG+TGG | + | chr6_1:44616400-44616419 | None:intergenic | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6_1:44616435-44616454 | Msa0886250:CDS | 50.0% | |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6_1:44617022-44617041 | Msa0886250:intron | 50.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6_1:44617039-44617058 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCGA+AGG | - | chr6_1:44617044-44617063 | Msa0886250:intron | 50.0% | |
| !! | GTTCGTATAGCGAAGGCATC+TGG | - | chr6_1:44617051-44617070 | Msa0886250:intron | 50.0% |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6_1:44617384-44617403 | Msa0886250:intron | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6_1:44617388-44617407 | None:intergenic | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6_1:44617864-44617883 | Msa0886250:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6_1:44617955-44617974 | Msa0886250:five_prime_UTR | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6_1:44617970-44617989 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6_1:44617971-44617990 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6_1:44617972-44617991 | None:intergenic | 50.0% | |
| CAGCGATGGAAGGGGGTTTA+TGG | + | chr6_1:44616327-44616346 | None:intergenic | 55.0% | |
| !!! | TTTTCTGGGGTGAGCAGCGA+TGG | + | chr6_1:44616341-44616360 | None:intergenic | 55.0% |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6_1:44616872-44616891 | Msa0886250:CDS | 55.0% | |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6_1:44617021-44617040 | Msa0886250:intron | 55.0% |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6_1:44617023-44617042 | Msa0886250:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6_1:44617393-44617412 | Msa0886250:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6_1:44617398-44617417 | Msa0886250:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6_1:44617399-44617418 | Msa0886250:CDS | 55.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6_1:44617876-44617895 | Msa0886250:exon | 55.0% | |
| TGGGGTGAGCAGCGATGGAA+GGG | + | chr6_1:44616336-44616355 | None:intergenic | 60.0% | |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6_1:44617036-44617055 | None:intergenic | 60.0% | |
| GGGTGAGCAGCGATGGAAGG+GGG | + | chr6_1:44616334-44616353 | None:intergenic | 65.0% | |
| GGGGTGAGCAGCGATGGAAG+GGG | + | chr6_1:44616335-44616354 | None:intergenic | 65.0% | |
| CTGGGGTGAGCAGCGATGGA+AGG | + | chr6_1:44616337-44616356 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44616264 | 44618040 | 44616264 | ID=Msa0886250;Name=Msa0886250 |
| chr6_1 | mRNA | 44616264 | 44618040 | 44616264 | ID=Msa0886250-mRNA-1;Parent=Msa0886250;Name=Msa0886250-mRNA-1;_AED=0.16;_eAED=0.16;_QI=153|1|0.83|1|1|1|6|0|347 |
| chr6_1 | exon | 44616264 | 44616506 | 44616264 | ID=Msa0886250-mRNA-1:exon:9584;Parent=Msa0886250-mRNA-1 |
| chr6_1 | exon | 44616590 | 44616946 | 44616590 | ID=Msa0886250-mRNA-1:exon:9583;Parent=Msa0886250-mRNA-1 |
| chr6_1 | exon | 44617119 | 44617287 | 44617119 | ID=Msa0886250-mRNA-1:exon:9582;Parent=Msa0886250-mRNA-1 |
| chr6_1 | exon | 44617386 | 44617472 | 44617386 | ID=Msa0886250-mRNA-1:exon:9581;Parent=Msa0886250-mRNA-1 |
| chr6_1 | exon | 44617580 | 44617677 | 44617580 | ID=Msa0886250-mRNA-1:exon:9580;Parent=Msa0886250-mRNA-1 |
| chr6_1 | exon | 44617798 | 44618040 | 44617798 | ID=Msa0886250-mRNA-1:exon:9579;Parent=Msa0886250-mRNA-1 |
| chr6_1 | five_prime_UTR | 44617888 | 44618040 | 44617888 | ID=Msa0886250-mRNA-1:five_prime_utr;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44617798 | 44617887 | 44617798 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44617580 | 44617677 | 44617580 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44617386 | 44617472 | 44617386 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44617119 | 44617287 | 44617119 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44616590 | 44616946 | 44616590 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| chr6_1 | CDS | 44616264 | 44616506 | 44616264 | ID=Msa0886250-mRNA-1:cds;Parent=Msa0886250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
