AlfalfaGEDB | Msa0886470

M. sativa cultivar zhongmu-4 / Msa0886470

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0886470	XP_013452042.1	94.055	841	50	0	1	841	1	841	0.0	1577

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0886470	sp\|Q9XID3\|Y1343_ARATH	59.556	811	296	18	22	821	23	812	0.0	924

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0886470	A0A072UJP6	94.055	841	50	0	1	841	1	841	0.0	1577

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0886470	MtrunA17_Chr6g0467301	94.055	841	50	0	1	841	1	841	0.0	1577
Msa0886470	MtrunA17_Chr6g0467281	83.274	843	133	6	1	841	1	837	0.0	1362
Msa0886470	MtrunA17_Chr1g0202331	36.101	831	450	29	14	783	13	823	1.35e-138	432
Msa0886470	MtrunA17_Chr3g0137741	38.039	765	396	25	43	776	55	772	8.87e-137	426
Msa0886470	MtrunA17_Chr2g0314611	36.715	828	428	31	6	795	13	782	1.38e-130	409
Msa0886470	MtrunA17_Chr2g0318171	36.732	765	395	24	64	798	77	782	1.89e-129	406
Msa0886470	MtrunA17_Chr1g0149381	35.957	737	414	21	64	776	79	781	4.37e-127	401
Msa0886470	MtrunA17_Chr2g0333091	35.656	732	422	21	64	776	71	772	8.17e-120	382
Msa0886470	MtrunA17_Chr1g0161631	33.913	805	421	27	38	784	43	794	6.98e-112	360
Msa0886470	MtrunA17_Chr4g0063701	34.182	746	422	26	76	778	88	807	1.06e-107	349

Showing 1 to 10 of 509 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0886470	AT1G34300.1	59.556	811	296	18	22	821	23	812	0.0	924
Msa0886470	AT5G24080.2	36.559	837	454	29	1	783	6	819	4.92e-145	450
Msa0886470	AT2G19130.1	36.571	834	436	28	7	791	2	791	6.84e-145	448
Msa0886470	AT5G24080.3	37.991	687	369	22	140	783	20	692	1.03e-127	400
Msa0886470	AT5G24080.1	37.991	687	369	22	140	783	20	692	1.03e-127	400
Msa0886470	AT4G32300.1	53.922	306	138	3	471	776	472	774	1.86e-108	352
Msa0886470	AT4G00340.1	34.119	721	418	19	77	768	69	761	2.74e-104	341
Msa0886470	AT5G35370.1	31.218	772	439	28	64	775	73	812	1.18e-98	327
Msa0886470	AT2G41890.1	30.265	793	462	23	14	778	14	743	7.03e-97	320
Msa0886470	AT4G00340.2	54.392	296	120	6	482	768	451	740	3.54e-94	313

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 226 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGAGAAGGCAGAA+GGG	0.625960	6_1:-45345945	None:intergenic
AAAGGGTTCAAGGAGAAGCT+TGG	0.552718	6_1:+45346970	Msa0886470:CDS
AAAGGTTAAGAATAGAACGT+GGG	0.646933	6_1:-45345510	None:intergenic
AAAGTCGTTCAAATGCTAGA+AGG	0.537121	6_1:+45347777	Msa0886470:CDS
AAATCCACCACCCTCTTTGG+GGG	0.651296	6_1:+45346729	Msa0886470:CDS
AAATCCGATGTTTACAGCTA+CGG	0.577567	6_1:+45347522	Msa0886470:CDS
AACCTTACACTGGTCCTGAA+CGG	0.581604	6_1:-45346314	None:intergenic
AACTCAGAGAGGACCATGAT+TGG	0.504952	6_1:-45345610	None:intergenic
AACTCCACCGCTGTCGACTC+CGG	0.510900	6_1:+45345740	Msa0886470:CDS
AACTCCGGGACTGCTAATAT+GGG	0.517991	6_1:+45345830	Msa0886470:CDS

Showing 1 to 10 of 226 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTAAGAATAGAACGT+GGG	-	chr6_1:45345513-45345532	None:intergenic	30.0%
ATGGGGATTTGAATTTGATT+TGG	+	chr6_1:45346020-45346039	Msa0886470:CDS	30.0%
ATGGATATTAACCCTAAAAC+AGG	-	chr6_1:45346109-45346128	None:intergenic	30.0%
AGAAAGTTGCAAAATTCCAA+TGG	-	chr6_1:45346128-45346147	None:intergenic	30.0%
ACTATAAGCAACAATAACAG+GGG	-	chr6_1:45346167-45346186	None:intergenic	30.0%
CTACTATAAGCAACAATAAC+AGG	-	chr6_1:45346169-45346188	None:intergenic	30.0%
TGAGGATTTATAACACTTCT+AGG	+	chr6_1:45346260-45346279	Msa0886470:CDS	30.0%
GAGGATTTATAACACTTCTA+GGG	+	chr6_1:45346261-45346280	Msa0886470:CDS	30.0%
AGGATTTATAACACTTCTAG+GGG	+	chr6_1:45346262-45346281	Msa0886470:CDS	30.0%
GAATGAAACTATGTTGACAT+TGG	+	chr6_1:45346477-45346496	Msa0886470:CDS	30.0%

Showing 1 to 10 of 269 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	45345497	45348022	45345497	ID=Msa0886470;Name=Msa0886470
chr6_1	mRNA	45345497	45348022	45345497	ID=Msa0886470-mRNA-1;Parent=Msa0886470;Name=Msa0886470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|841
chr6_1	exon	45345497	45348022	45345497	ID=Msa0886470-mRNA-1:exon:9725;Parent=Msa0886470-mRNA-1
chr6_1	CDS	45345497	45348022	45345497	ID=Msa0886470-mRNA-1:cds;Parent=Msa0886470-mRNA-1

Gene Sequence

>Msa0886470

ATGTACCTCAAATCCCACGTTCTATTCTTAACCTTTCTTCTCTTCATTGTCGCCATCACCACCGCCATCACTGCCATCAACCCCGGTTCCATTCTCTCCGCCTCCAACACCAACCAATCATGGTCCTCTCTGAGTTCCACTTTCTCTTTACGCTTTGTCCCCGTCGACCCACCAACCTCTCCTCCTACCTTCCTCACCGCCATTGTCTACTCTGGTGGAGCTCCTGTTGTCTGGACAGCTGGTAACTCCACCGCTGTCGACTCCGGTGGTTCCTTCCAGTTTCTTACCAATGGCGACCTTCGTCTCATTAACGGTTCTGGCGCCACCGTCTGGAACTCCGGGACTGCTAATATGGGTGCAACATCAGCCACTGTTGAAGACAGTGGTAAATTGGTGATTTTGAACGGAACGAATGAGGTTTGGTCAAGCTTTGATCATCTTACAGATACCCTTCTGCCTTCTCAGAATTTTACTGTTGGTAAGATTTTGAAATCTGGTGATTATAGTTTTAGTCTTGGAAAGAATGGGGATTTGAATTTGATTTGGAATGATAGTATAACTTTTTGGACTCATGGTTTGAATTCTTCTGTGAATGTGAGTTTGAGTAATCCTGTTTTAGGGTTAATATCCATTGGAATTTTGCAACTTTCTGATGTGAAATTGAGTACCCCTGTTATTGTTGCTTATAGTAGTGACTATGATAATGTAGGGAGTGGTGTGAGCGATGTTCTTAGGGTCTTGAAATTGGATAGGGATGGGAATTTGAGGATTTATAACACTTCTAGGGGTAGTGGAAATCTGGTTGCGAGATGGGCAGCCGTTCAGGACCAGTGTAAGGTTTATGCTTTTTGCGGGAACTATGGTATTTGCAGTTATAATGATACGAACCCTATTTGCAGTTGTCCTTCGGAGAATTTCGAGATGATTGGTGGTAATAGAAAAGGGTGTAGGAGGAAGGTAGATCTTGATAGTTGTCAAGGGAATGAAACTATGTTGACATTGGATCGTACGCAATTATTAACTTATTACCCTGAGACTGATTCGGCGTTTCTCATTGGTTTCACGGCGTGTAGAGGAAATTGTCTCTCAGGTTCGCGTGCTTGTTTTGCTTCTACTTCGTTGTCGGATGGAACTGGACGTTGTTATTTGAAGTCGGTAGATTTTTTCAGTGGATATTATAGTCCAACGTTACCTAGTATTTCGTATGTCAAGGTTTGTTCGCCGTTGGCTCCAAATCCACCACCCTCTTTGGGGGAGACGGTGAAGGAAAAGAGTTCGAGTCTACCTGCTTGGGTTATTGTGGTTGTTATTCTGGGTACCCTTTTAGTTGGGATTGCTATTGAAGGTGGATTATGGATTTGGTGCTGTAGAAAAACTGCAAGGTTTGGTGTATTGTCGGCTCGGTATGCACTTCTAGAATACGCTTCAGGTGCGCCGGTTCAGTTCACATACAAGGAACTTCAGCGCTCGACAAAAGGGTTCAAGGAGAAGCTTGGAGCTGGTGGATTTGGTGCTGTGTATCGAGGAATTCTTGTTAACAAAACTGTTGTTGCGGTGAAACAGCTTGAAGGAATTGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTGCAACTATAAGCAGTACCCATCATCTTAATTTGGTGAGACTTATCGGTTTTTGCTCGGAAGGACGCCGCAGGCTTTTAGTCTATGAGTTCATGAAAAATAGTTCCTTGGATAATTTTTTATTCCTGGAAGAAGAGCAACTGGGAAAACTGTTGAATTGGGAGTATCGGTACAATATAGCCCTCAGCACTGCAAAGGGAATCACATACCTCCACGAGGAGTGTCGCGACTGCATAGTCCACTGTGATATCAAACCTGAAAACATTCTCTTGGACGAGAATTACGTCGCCAAAGTATCTGATTTCGGTCTGGCAAAGCTAGTTGATCCGAAAGACCATAGACACAGAACGTTGACAAGCGTACGAGGAACAAGAGGATATTTAGCACCTGAATGGATTGCGAATCTTCCTGTAACATCGAAATCCGATGTTTACAGCTACGGCATGGTTTTGTTAGAGATTGTGAGCGGAAAGAGGAACTTTAATGTCTCCGACGAAACAGACAGGAAGAAGTTCTCAATCTGGGCCTATGAAGAGTTTGAGAAAGGTAACATCAATGGAATTTTGGATAAAAGACTCGCCGATATGGAAGTTGATATGGAGCAAGTTACGAGAGCGATTCAGGTCTGCTTTTGGTGCATCCAAGAGCAACCATCTCAAAGACCGGCGATGAGCAAAGTCGTTCAAATGCTAGAAGGTGTAAAAGAAATTCAGAAACCACCTCCTCCAAAATTAGTCATTGAAGGACCTGTTAGTGAAACCAGCATCTACATTAGTAGCAATGTTAGCGCATTTTCCACAATTGGAGCCTCACCAAATGTTCCTTCACCATCATCAATCCAGGCTAGTGGTGTTTCATACTTCGCCGCAGGAAGAAACCCTGAGAAGGCAACTTCATCTCTTTTGCAATCAAATCAATGA

Protein sequence

>Msa0886470

MYLKSHVLFLTFLLFIVAITTAITAINPGSILSASNTNQSWSSLSSTFSLRFVPVDPPTSPPTFLTAIVYSGGAPVVWTAGNSTAVDSGGSFQFLTNGDLRLINGSGATVWNSGTANMGATSATVEDSGKLVILNGTNEVWSSFDHLTDTLLPSQNFTVGKILKSGDYSFSLGKNGDLNLIWNDSITFWTHGLNSSVNVSLSNPVLGLISIGILQLSDVKLSTPVIVAYSSDYDNVGSGVSDVLRVLKLDRDGNLRIYNTSRGSGNLVARWAAVQDQCKVYAFCGNYGICSYNDTNPICSCPSENFEMIGGNRKGCRRKVDLDSCQGNETMLTLDRTQLLTYYPETDSAFLIGFTACRGNCLSGSRACFASTSLSDGTGRCYLKSVDFFSGYYSPTLPSISYVKVCSPLAPNPPPSLGETVKEKSSSLPAWVIVVVILGTLLVGIAIEGGLWIWCCRKTARFGVLSARYALLEYASGAPVQFTYKELQRSTKGFKEKLGAGGFGAVYRGILVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRRRLLVYEFMKNSSLDNFLFLEEEQLGKLLNWEYRYNIALSTAKGITYLHEECRDCIVHCDIKPENILLDENYVAKVSDFGLAKLVDPKDHRHRTLTSVRGTRGYLAPEWIANLPVTSKSDVYSYGMVLLEIVSGKRNFNVSDETDRKKFSIWAYEEFEKGNINGILDKRLADMEVDMEQVTRAIQVCFWCIQEQPSQRPAMSKVVQMLEGVKEIQKPPPPKLVIEGPVSETSIYISSNVSAFSTIGASPNVPSPSSIQASGVSYFAAGRNPEKATSSLLQSNQ*