AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0889060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0889060 MtrunA17_Chr7g0214071 58.419 291 52 8 12 268 1 256 2.94e-97 285
Msa0889060 MtrunA17_Chr3g0131911 52.809 178 47 3 12 152 1 178 2.39e-55 178
Msa0889060 MtrunA17_Chr8g0385991 50.568 176 51 4 12 152 1 175 2.09e-53 172
Msa0889060 MtrunA17_Chr4g0042561 36.576 257 124 7 25 248 9 259 3.17e-41 142
Msa0889060 MtrunA17_Chr4g0047841 46.857 175 39 4 24 144 14 188 1.05e-40 143
Msa0889060 MtrunA17_Chr2g0318101 47.531 162 43 4 25 144 15 176 5.64e-40 142
Msa0889060 MtrunA17_Chr7g0252971 36.889 225 93 5 22 204 5 222 8.41e-40 141
Msa0889060 MtrunA17_Chr3g0124761 49.032 155 48 4 22 145 4 158 1.03e-39 139
Msa0889060 MtrunA17_Chr5g0417791 47.436 156 49 3 23 145 1 156 3.05e-39 137
Msa0889060 MtrunA17_Chr2g0326361 46.053 152 47 3 25 141 14 165 4.47e-38 136
Msa0889060 MtrunA17_Chr7g0263931 45.223 157 51 4 20 141 6 162 7.67e-38 135
Msa0889060 MtrunA17_Chr2g0309891 44.805 154 53 3 23 144 4 157 7.09e-37 133
Msa0889060 MtrunA17_Chr4g0060931 40.526 190 77 6 12 165 1 190 7.12e-37 134
Msa0889060 MtrunA17_Chr3g0109821 43.077 195 73 5 23 184 4 193 1.04e-36 137
Msa0889060 MtrunA17_Chr8g0384721 45.860 157 53 3 21 145 3 159 2.29e-36 130
Msa0889060 MtrunA17_Chr2g0318081 45.455 165 58 4 21 153 12 176 2.66e-36 132
Msa0889060 MtrunA17_Chr3g0091921 38.587 184 70 4 4 156 7 178 1.11e-35 129
Msa0889060 MtrunA17_Chr5g0433781 45.752 153 52 3 23 144 4 156 1.71e-35 134
Msa0889060 MtrunA17_Chr4g0017921 40.000 180 74 5 25 171 8 186 2.32e-35 129
Msa0889060 MtrunA17_Chr8g0359921 46.951 164 48 6 22 150 11 170 2.69e-35 129
Msa0889060 MtrunA17_Chr1g0200561 44.667 150 53 3 25 144 19 168 3.47e-35 129
Msa0889060 MtrunA17_Chr4g0018391 44.371 151 54 4 25 145 7 157 4.41e-35 129
Msa0889060 MtrunA17_Chr2g0309331 41.026 156 61 3 21 145 6 161 7.01e-35 128
Msa0889060 MtrunA17_Chr3g0130731 44.231 156 56 3 21 145 3 158 1.04e-34 126
Msa0889060 MtrunA17_Chr5g0405211 40.698 172 72 4 25 166 8 179 1.26e-34 127
Msa0889060 MtrunA17_Chr6g0484441 41.667 156 64 3 22 150 2 157 1.56e-34 127
Msa0889060 MtrunA17_Chr5g0398971 41.290 155 59 3 25 147 7 161 1.78e-34 127
Msa0889060 MtrunA17_Chr3g0139331 39.011 182 73 4 22 165 8 189 4.63e-34 126
Msa0889060 MtrunA17_Chr4g0056541 40.764 157 63 3 24 150 6 162 1.26e-33 125
Msa0889060 MtrunA17_Chr8g0372121 44.371 151 54 4 25 145 6 156 1.56e-33 124
Msa0889060 MtrunA17_Chr1g0147421 39.594 197 81 8 4 170 8 196 2.28e-33 124
Msa0889060 MtrunA17_Chr6g0453451 38.333 180 78 5 10 156 3 182 4.42e-33 122
Msa0889060 MtrunA17_Chr8g0346001 36.782 174 69 3 13 145 3 176 1.51e-32 123
Msa0889060 MtrunA17_Chr6g0481091 42.484 153 57 3 23 144 4 156 1.55e-32 119
Msa0889060 MtrunA17_Chr5g0400461 35.859 198 89 3 21 180 2 199 9.86e-32 119
Msa0889060 MtrunA17_Chr4g0054791 39.766 171 69 3 25 161 6 176 2.90e-31 118
Msa0889060 MtrunA17_Chr8g0361731 37.912 182 73 4 12 153 1 182 4.36e-31 119
Msa0889060 MtrunA17_Chr5g0417001 38.674 181 72 4 12 153 1 181 6.94e-31 118
Msa0889060 MtrunA17_Chr2g0316971 38.750 160 65 3 22 148 20 179 7.58e-31 118
Msa0889060 MtrunA17_Chr3g0130101 40.000 165 64 5 27 158 9 171 3.19e-30 116
Msa0889060 MtrunA17_Chr1g0183741 41.892 148 57 3 25 144 10 156 3.42e-30 114
Msa0889060 MtrunA17_Chr7g0253011 40.936 171 63 5 12 144 1 171 3.80e-30 116
Msa0889060 MtrunA17_Chr2g0312321 38.182 165 70 4 15 149 1 163 4.68e-30 114
Msa0889060 MtrunA17_Chr1g0197351 42.262 168 58 4 25 154 42 208 5.02e-30 117
Msa0889060 MtrunA17_Chr7g0217721 35.644 202 84 5 18 175 12 211 2.07e-29 114
Msa0889060 MtrunA17_Chr7g0243371 61.364 88 9 1 70 132 12 99 2.83e-29 107
Msa0889060 MtrunA17_Chr5g0442771 38.389 211 82 8 11 180 5 208 6.37e-29 111
Msa0889060 MtrunA17_Chr2g0311651 37.173 191 73 6 17 161 13 202 7.43e-29 111
Msa0889060 MtrunA17_Chr3g0128111 39.865 148 58 3 28 144 45 192 8.64e-29 109
Msa0889060 MtrunA17_Chr7g0261411 41.781 146 56 3 25 142 10 154 1.29e-28 110
Msa0889060 MtrunA17_Chr6g0453131 40.881 159 55 5 25 144 15 173 1.47e-28 112
Msa0889060 MtrunA17_Chr7g0217711 41.791 134 50 3 18 124 12 144 2.03e-28 107
Msa0889060 MtrunA17_Chr3g0128151 36.667 180 73 4 25 173 22 191 3.86e-28 112
Msa0889060 MtrunA17_Chr3g0092671 40.491 163 66 4 27 158 7 169 5.92e-28 112
Msa0889060 MtrunA17_Chr6g0461661 36.646 161 69 3 23 150 16 176 7.14e-28 110
Msa0889060 MtrunA17_Chr8g0364791 37.500 168 70 4 24 158 5 170 1.65e-27 110
Msa0889060 MtrunA17_Chr1g0197361 39.264 163 68 4 27 158 10 172 1.69e-27 110
Msa0889060 MtrunA17_Chr5g0428991 36.216 185 77 4 24 177 24 198 1.83e-27 110
Msa0889060 MtrunA17_Chr1g0201021 40.252 159 60 4 27 152 21 177 2.26e-27 110
Msa0889060 MtrunA17_Chr3g0144271 40.909 154 58 5 19 143 17 166 9.03e-27 107
Msa0889060 MtrunA17_Chr2g0311661 36.649 191 74 6 12 157 9 197 1.53e-26 104
Msa0889060 MtrunA17_Chr4g0076731 39.869 153 62 4 27 151 56 206 1.71e-26 107
Msa0889060 MtrunA17_Chr8g0384201 33.684 190 91 4 24 180 5 192 4.60e-26 106
Msa0889060 MtrunA17_Chr4g0038751 37.415 147 61 3 27 144 17 161 7.01e-23 95.1
Msa0889060 MtrunA17_Chr8g0384351 38.667 150 63 7 23 153 8 147 2.67e-22 90.9
Msa0889060 MtrunA17_Chr8g0345671 35.135 148 64 4 25 142 11 156 5.48e-22 94.4
Msa0889060 MtrunA17_Chr4g0050701 32.317 164 67 5 25 152 11 166 1.83e-19 83.6
Msa0889060 MtrunA17_Chr8g0345691 32.432 148 68 4 25 142 12 157 1.48e-18 84.7
Msa0889060 MtrunA17_Chr2g0321741 39.823 113 37 3 56 141 23 131 1.82e-18 84.0
Msa0889060 MtrunA17_Chr8g0345711 35.659 129 53 4 25 123 12 140 5.27e-18 79.3
Msa0889060 MtrunA17_Chr8g0345731 30.667 150 71 4 25 141 24 173 3.09e-17 77.0
Msa0889060 MtrunA17_Chr4g0026141 33.758 157 66 6 25 143 5 161 1.68e-16 77.0
Msa0889060 MtrunA17_Chr2g0321631 34.177 158 63 6 26 143 5 161 1.97e-16 76.6
Msa0889060 MtrunA17_Chr3g0113001 35.772 123 50 3 60 153 3 125 6.27e-14 70.5
Msa0889060 MtrunA17_Chr3g0113011 47.368 57 30 0 18 74 12 68 2.34e-13 63.9
Msa0889060 MtrunA17_Chr7g0251661 38.542 96 51 5 18 108 3 95 2.98e-13 65.9
Msa0889060 MtrunA17_Chr7g0266701 29.167 168 70 7 25 147 4 167 9.07e-13 66.6
Msa0889060 MtrunA17_Chr8g0345741 27.338 139 65 4 36 144 2 134 2.86e-12 63.2
Msa0889060 MtrunA17_Chr7g0251651 39.785 93 48 4 17 104 10 99 3.25e-12 63.9
Msa0889060 MtrunA17_Chr8g0345701 29.787 141 57 5 25 123 7 147 3.90e-12 63.2
Msa0889060 MtrunA17_Chr3g0113041 45.614 57 31 0 18 74 12 68 1.24e-11 59.3
Msa0889060 MtrunA17_Chr7g0251671 28.834 163 80 8 18 151 3 158 3.60e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0889060 AT5G13180.1 64.072 167 33 2 12 151 1 167 5.68e-70 216
Msa0889060 AT2G33480.2 60.123 163 40 3 12 149 1 163 1.09e-63 201
Msa0889060 AT2G33480.1 59.394 165 40 3 12 149 1 165 1.88e-63 200
Msa0889060 AT1G77450.1 45.402 174 56 5 21 156 6 178 1.11e-41 144
Msa0889060 AT1G61110.1 48.795 166 43 4 21 144 12 177 1.85e-41 145
Msa0889060 AT1G54330.1 48.026 152 47 3 23 144 4 153 8.72e-40 140
Msa0889060 AT3G04070.2 45.294 170 52 4 19 147 4 173 1.25e-39 141
Msa0889060 AT1G69490.1 48.077 156 48 3 25 147 9 164 3.05e-39 138
Msa0889060 AT3G03200.1 45.000 160 56 3 23 150 4 163 1.19e-38 141
Msa0889060 AT4G27410.2 43.636 165 64 3 22 157 11 175 3.40e-38 136
Msa0889060 AT1G01720.1 45.679 162 56 4 23 152 5 166 1.88e-37 134
Msa0889060 AT3G04070.1 41.935 186 51 4 19 147 4 189 1.90e-37 135
Msa0889060 AT1G52880.1 45.679 162 47 4 29 149 21 182 3.09e-37 134
Msa0889060 AT5G17260.1 45.000 160 56 3 23 150 4 163 3.26e-37 137
Msa0889060 AT1G65910.1 39.459 185 79 4 23 176 4 186 3.28e-37 139
Msa0889060 AT3G15510.1 46.584 161 44 4 29 147 21 181 4.49e-37 134
Msa0889060 AT5G39610.1 36.866 217 94 6 23 196 18 234 9.75e-37 132
Msa0889060 AT1G33280.1 42.000 150 58 2 25 145 8 157 6.96e-36 130
Msa0889060 AT5G07680.1 42.500 160 61 4 22 150 14 173 7.93e-36 130
Msa0889060 AT1G12260.2 44.231 156 57 4 25 150 7 162 8.54e-36 130
Msa0889060 AT3G18400.1 43.312 157 61 4 22 150 2 158 9.80e-36 130
Msa0889060 AT1G52890.1 41.379 174 69 4 22 162 11 184 1.06e-35 130
Msa0889060 AT5G07680.2 43.312 157 58 4 25 150 3 159 1.25e-35 129
Msa0889060 AT4G27410.3 39.560 182 64 3 22 157 11 192 1.48e-35 129
Msa0889060 AT5G61430.1 43.125 160 60 5 22 150 13 172 1.95e-35 129
Msa0889060 AT1G12260.1 44.231 156 57 4 25 150 7 162 3.04e-35 130
Msa0889060 AT5G66300.1 43.210 162 61 4 15 145 2 163 4.04e-35 127
Msa0889060 AT4G10350.1 43.137 153 55 4 25 145 9 161 4.72e-35 129
Msa0889060 AT3G04060.1 42.857 154 56 3 23 144 18 171 6.83e-35 128
Msa0889060 AT2G18060.3 44.937 158 56 5 25 151 9 166 9.14e-35 128
Msa0889060 AT2G18060.1 44.937 158 56 5 25 151 9 166 9.14e-35 128
Msa0889060 AT1G62700.1 44.231 156 57 4 24 149 6 161 1.20e-34 129
Msa0889060 AT1G62700.2 44.231 156 57 4 24 149 6 161 1.20e-34 129
Msa0889060 AT3G10490.1 43.125 160 59 3 25 152 27 186 1.88e-34 124
Msa0889060 AT1G76420.1 41.317 167 66 4 9 144 6 171 3.87e-34 126
Msa0889060 AT5G63790.1 39.896 193 78 4 21 180 46 233 4.75e-34 125
Msa0889060 AT1G79580.3 40.645 155 62 2 21 145 13 167 4.84e-34 127
Msa0889060 AT1G79580.5 40.645 155 62 2 21 145 13 167 4.84e-34 127
Msa0889060 AT1G79580.4 40.645 155 62 2 21 145 13 167 4.84e-34 127
Msa0889060 AT1G79580.2 40.645 155 62 2 21 145 13 167 4.84e-34 127
Msa0889060 AT1G79580.1 40.645 155 62 2 21 145 13 167 4.84e-34 127
Msa0889060 AT5G63790.2 39.896 193 78 4 21 180 56 243 5.83e-34 125
Msa0889060 AT3G15500.1 42.138 159 63 3 22 151 11 169 6.23e-34 125
Msa0889060 AT3G17730.1 43.137 153 56 3 23 144 4 156 2.55e-33 122
Msa0889060 AT3G10480.1 43.750 160 58 3 25 152 27 186 2.88e-33 126
Msa0889060 AT4G36160.1 43.046 151 56 3 25 145 10 160 3.07e-33 125
Msa0889060 AT4G36160.3 43.046 151 56 3 25 145 10 160 3.07e-33 125
Msa0889060 AT4G36160.2 43.046 151 56 3 25 145 14 164 3.11e-33 125
Msa0889060 AT5G08790.1 42.857 175 65 5 22 162 4 177 3.69e-33 122
Msa0889060 AT5G18270.2 42.208 154 57 3 23 144 19 172 3.81e-33 124
Msa0889060 AT5G46590.1 40.237 169 68 3 21 156 2 170 4.99e-33 122
Msa0889060 AT3G12977.1 44.025 159 57 6 22 149 15 172 5.97e-33 122
Msa0889060 AT5G18270.1 42.208 154 57 3 23 144 19 172 7.13e-33 123
Msa0889060 AT2G24430.2 40.741 162 66 3 19 150 10 171 7.17e-33 122
Msa0889060 AT2G24430.1 40.741 162 66 3 19 150 10 171 7.17e-33 122
Msa0889060 AT1G71930.2 42.667 150 56 3 25 144 9 158 9.73e-33 122
Msa0889060 AT1G71930.1 42.667 150 56 3 25 144 9 158 9.73e-33 122
Msa0889060 AT5G04410.1 44.654 159 57 3 25 152 9 167 1.22e-32 125
Msa0889060 AT3G10490.2 43.125 160 59 3 25 152 27 186 1.53e-32 124
Msa0889060 AT1G32770.1 37.356 174 67 4 14 145 5 178 1.61e-32 122
Msa0889060 AT2G46770.1 37.500 176 65 4 15 145 6 181 2.50e-32 122
Msa0889060 AT5G62380.2 41.830 153 59 3 23 145 5 157 2.51e-32 122
Msa0889060 AT5G62380.1 41.830 153 59 3 23 145 5 157 2.51e-32 122
Msa0889060 AT3G10480.2 43.396 159 59 3 25 152 27 185 3.67e-32 123
Msa0889060 AT3G10500.1 43.396 159 59 3 25 152 9 167 4.60e-32 124
Msa0889060 AT5G53950.1 39.506 162 65 3 25 153 17 178 1.29e-31 120
Msa0889060 AT3G15170.1 41.026 156 59 4 22 144 17 172 1.35e-31 119
Msa0889060 AT1G56010.2 35.644 202 87 6 7 175 2 193 4.25e-31 118
Msa0889060 AT3G61910.1 36.458 192 75 7 15 161 1 190 6.70e-31 117
Msa0889060 AT1G33060.1 43.046 151 55 3 25 144 24 174 6.75e-31 121
Msa0889060 AT1G33060.2 43.046 151 55 3 25 144 24 174 6.76e-31 121
Msa0889060 AT3G29035.1 40.000 160 65 3 22 150 21 180 1.52e-30 116
Msa0889060 AT4G35580.1 40.107 187 76 5 25 180 9 190 1.77e-29 116
Msa0889060 AT4G35580.3 40.107 187 76 5 25 180 9 190 1.77e-29 116
Msa0889060 AT4G35580.2 40.107 187 76 5 25 180 9 190 1.81e-29 116
Msa0889060 AT5G64060.1 34.091 220 107 5 21 202 2 221 2.01e-29 114
Msa0889060 AT5G46590.2 41.667 144 55 2 21 135 2 145 4.16e-29 112
Msa0889060 AT4G17980.1 40.252 159 60 3 21 144 2 160 4.33e-29 111
Msa0889060 AT4G17980.2 40.252 159 60 3 21 144 2 160 6.80e-29 111
Msa0889060 AT3G10480.3 36.269 193 58 3 25 152 27 219 9.14e-29 114
Msa0889060 AT1G32510.1 35.610 205 81 6 25 179 6 209 2.78e-28 109
Msa0889060 AT5G09330.5 35.204 196 94 4 21 184 2 196 4.53e-28 112
Msa0889060 AT5G09330.2 35.204 196 94 4 21 184 2 196 4.53e-28 112
Msa0889060 AT5G09330.4 35.204 196 94 4 21 184 2 196 4.53e-28 112
Msa0889060 AT5G09330.3 35.204 196 94 4 21 184 2 196 4.53e-28 112
Msa0889060 AT5G09330.1 35.204 196 94 4 21 184 2 196 4.53e-28 112
Msa0889060 AT1G34190.1 39.873 158 62 4 27 152 18 174 8.05e-28 112
Msa0889060 AT2G43000.1 42.581 155 58 6 27 151 20 173 1.73e-27 107
Msa0889060 AT5G39820.1 37.368 190 66 6 10 147 6 194 1.76e-27 108
Msa0889060 AT1G26870.1 36.408 206 84 7 22 180 13 218 3.05e-27 109
Msa0889060 AT2G02450.1 35.519 183 83 5 27 181 53 228 3.89e-27 108
Msa0889060 AT2G33480.3 48.113 106 29 2 70 149 3 108 4.93e-27 104
Msa0889060 AT2G02450.2 35.519 183 83 5 27 181 53 228 5.62e-27 108
Msa0889060 AT1G34180.3 38.854 157 65 3 27 152 18 174 9.39e-27 108
Msa0889060 AT1G34180.1 38.854 157 65 3 27 152 18 174 1.36e-26 108
Msa0889060 AT3G12910.1 37.850 214 68 10 27 180 23 231 2.43e-26 105
Msa0889060 AT3G49530.1 38.816 152 61 3 25 144 13 164 2.79e-26 107
Msa0889060 AT3G49530.2 38.816 152 61 3 25 144 13 164 3.71e-26 106
Msa0889060 AT5G22290.1 34.831 178 86 3 27 177 23 197 9.25e-26 103
Msa0889060 AT1G34180.4 36.095 169 65 3 27 152 18 186 1.01e-25 105
Msa0889060 AT1G34180.2 36.095 169 65 3 27 152 18 186 1.41e-25 105
Msa0889060 AT5G04395.1 37.241 145 49 2 22 124 25 169 3.34e-25 99.4
Msa0889060 AT2G27300.1 38.194 144 58 3 25 141 14 153 5.34e-25 102
Msa0889060 AT4G28530.1 38.150 173 62 5 18 146 3 174 6.43e-25 102
Msa0889060 AT5G24590.2 39.490 157 55 4 25 145 13 165 8.92e-25 102
Msa0889060 AT2G17040.1 38.095 147 60 3 27 144 8 152 1.37e-24 99.8
Msa0889060 AT3G44290.2 37.324 142 58 3 27 141 16 153 2.03e-23 95.5
Msa0889060 AT1G02230.1 38.255 149 61 5 26 144 4 151 4.63e-23 97.1
Msa0889060 AT3G44290.1 37.324 142 58 3 27 141 16 153 1.03e-22 95.9
Msa0889060 AT5G14000.1 33.333 162 80 3 16 151 6 165 7.38e-22 90.9
Msa0889060 AT4G28530.2 41.216 148 55 6 18 146 3 137 8.09e-22 92.8
Msa0889060 AT5G14000.2 35.172 145 68 2 18 136 8 152 1.80e-21 88.6
Msa0889060 AT1G32870.3 37.158 183 77 6 3 152 27 204 1.12e-20 91.7
Msa0889060 AT1G32870.2 38.690 168 66 5 18 152 5 168 3.06e-20 90.1
Msa0889060 AT1G32870.1 38.690 168 66 5 18 152 5 168 3.40e-20 90.1
Msa0889060 AT1G02250.1 35.119 168 76 5 26 161 4 170 1.13e-19 87.8
Msa0889060 AT5G50820.1 36.364 143 58 4 16 130 7 144 2.61e-19 83.6
Msa0889060 AT5G64530.1 33.750 160 59 5 23 142 1 153 3.19e-19 83.2
Msa0889060 AT5G64530.2 37.600 125 48 4 23 124 1 118 1.23e-18 80.9
Msa0889060 AT4G10350.2 39.175 97 33 2 75 145 18 114 2.63e-17 80.1
Msa0889060 AT3G04420.1 34.228 149 66 5 26 144 4 150 5.70e-17 79.7
Msa0889060 AT3G04420.2 34.228 149 66 5 26 144 4 150 7.15e-17 79.0
Msa0889060 AT1G02220.1 33.784 148 63 5 26 143 4 146 2.00e-16 78.6
Msa0889060 AT4G01550.1 31.868 182 83 5 28 177 7 179 3.17e-16 78.2
Msa0889060 AT3G12977.2 40.594 101 33 3 76 149 19 119 7.65e-15 72.4
Msa0889060 AT5G61430.2 37.500 104 37 3 75 150 6 109 1.74e-14 72.0
Msa0889060 AT5G22380.1 30.968 155 67 5 28 143 8 161 3.90e-14 70.5
Msa0889060 AT1G56010.1 34.127 126 45 3 79 175 10 126 4.48e-14 70.5
Msa0889060 AT4G01520.1 32.692 156 70 5 26 148 5 158 8.12e-14 70.5
Msa0889060 AT4G01540.4 33.117 154 68 5 28 148 7 158 5.16e-13 68.6
Msa0889060 AT4G01540.2 33.117 154 68 5 28 148 7 158 5.25e-13 68.9
Msa0889060 AT4G01540.1 33.117 154 68 5 28 148 7 158 5.31e-13 68.9
Msa0889060 AT4G01540.3 33.117 154 68 5 28 148 7 158 6.08e-13 68.6
Msa0889060 AT3G44350.2 30.573 157 71 5 25 144 5 160 4.42e-12 64.7
Msa0889060 AT5G14000.3 50.877 57 28 0 16 72 6 62 1.53e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTCTTTACAGATAA+AGG 0.168363 6_1:+55028206 None:intergenic
ACGATGCTCCCATCCTCTTT+TGG 0.241605 6_1:-55026874 Msa0889060:CDS
TTGGTTCCCATTTGGATACT+TGG 0.294541 6_1:+55027768 None:intergenic
CGTCTATCCGATGTGGGACT+TGG 0.298937 6_1:-55027208 Msa0889060:CDS
GGGCTACAAACTCTGGTTAC+TGG 0.347454 6_1:-55027738 Msa0889060:CDS
CTGTTGGATTGGTTCCCATT+TGG 0.365074 6_1:+55027760 None:intergenic
TCTTTCTCTTTACAGATAAA+GGG 0.373925 6_1:+55028207 None:intergenic
TAAAGAGAAAGAAGATAAGA+TGG 0.386787 6_1:-55028196 Msa0889060:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6_1:-55028028 Msa0889060:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.402483 6_1:-55028029 Msa0889060:CDS
TTCATGTTCATTTGTGATTG+AGG 0.408967 6_1:+55026921 None:intergenic
ATTCATGATCCAATCAGTTC+TGG 0.414917 6_1:+55027608 None:intergenic
CCAAAGTTGTTGCTACTGCT+TGG 0.427009 6_1:+55027373 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 6_1:+55028124 None:intergenic
CAAATGGGAACCAATCCAAC+AGG 0.433663 6_1:-55027759 Msa0889060:CDS
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6_1:-55027775 Msa0889060:CDS
AAGATCAATTTCAGAAATGA+TGG 0.441910 6_1:+55028047 None:intergenic
CGCACCAAGCCCAAAGGGCG+TGG 0.443406 6_1:+55027165 None:intergenic
AGTTTGTAGCCCTGTTGGAT+TGG 0.451662 6_1:+55027749 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6_1:-55027727 Msa0889060:intron
CCAAGCCCAAAGGGCGTGGG+GGG 0.460980 6_1:+55027169 None:intergenic
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6_1:+55028114 None:intergenic
CTAACTCATCCTTACAAAAC+CGG 0.472364 6_1:-55027283 Msa0889060:CDS
GTCTATCCGATGTGGGACTT+GGG 0.472516 6_1:-55027207 Msa0889060:CDS
CTCTTTACAGATAAAGGGCA+TGG 0.473443 6_1:+55028212 None:intergenic
TCCAACAGGGCTACAAACTC+TGG 0.476642 6_1:-55027745 Msa0889060:CDS
CTCATAGTTCCAGAACTGAT+TGG 0.479030 6_1:-55027617 Msa0889060:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 6_1:-55027571 Msa0889060:intron
TTCAGCTTCAAGTTCAAAAG+TGG 0.491537 6_1:-55027329 Msa0889060:CDS
CACCAAGCCCAAAGGGCGTG+GGG 0.492115 6_1:+55027167 None:intergenic
ACCAGAGTTTGTAGCCCTGT+TGG 0.493653 6_1:+55027744 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 6_1:+55026927 None:intergenic
CCTTACAAAACCGGCTTGCA+AGG 0.497731 6_1:-55027274 Msa0889060:CDS
GCACCAAGCCCAAAGGGCGT+GGG 0.499945 6_1:+55027166 None:intergenic
GAGGAGAAGAGTATATAAAG+AGG 0.507066 6_1:+55027239 None:intergenic
AAATGATGGAAGCAGGTAAA+GGG 0.510410 6_1:+55028061 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.511570 6_1:+55027577 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 6_1:+55026865 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.520507 6_1:+55027560 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 6_1:+55026861 None:intergenic
CAAGCCCAAAGGGCGTGGGG+GGG 0.523410 6_1:+55027170 None:intergenic
GAAATGATGGAAGCAGGTAA+AGG 0.533367 6_1:+55028060 None:intergenic
ATTTCAGAAATGATGGAAGC+AGG 0.539963 6_1:+55028054 None:intergenic
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6_1:-55027774 Msa0889060:CDS
CCAAGCAGTAGCAACAACTT+TGG 0.545841 6_1:-55027373 Msa0889060:CDS
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 6_1:+55027569 None:intergenic
TGTTCAATACTTGAAGCGTA+AGG 0.550952 6_1:-55028094 Msa0889060:CDS
GCAATCCTCACCTTGCAAGC+CGG 0.552628 6_1:+55027264 None:intergenic
ATTCACGCACCAAGCCCAAA+GGG 0.555011 6_1:+55027160 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.563013 6_1:+55026866 None:intergenic
GAGAAGAGTATATAAAGAGG+AGG 0.567413 6_1:+55027242 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6_1:-55028018 Msa0889060:intron
ATATTTCTGAAGAGGAGAGC+TGG 0.573188 6_1:-55027424 Msa0889060:CDS
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6_1:-55027432 Msa0889060:CDS
CAATCAGTTCTGGAACTATG+AGG 0.582807 6_1:+55027618 None:intergenic
ATGTTCATTTGTGATTGAGG+AGG 0.585375 6_1:+55026924 None:intergenic
ACCAAGCCCAAAGGGCGTGG+GGG 0.590599 6_1:+55027168 None:intergenic
CAAAACCGGCTTGCAAGGTG+AGG 0.597241 6_1:-55027269 Msa0889060:CDS
AGAGTCTCGTCTATCCGATG+TGG 0.616721 6_1:-55027215 Msa0889060:CDS
GTTGGATGAAAACGGAAACC+TGG 0.621096 6_1:+55028132 None:intergenic
TACATACCAGGTAAATCCCA+AGG 0.624010 6_1:+55028012 None:intergenic
GAGTCTCGTCTATCCGATGT+GGG 0.624155 6_1:-55027214 Msa0889060:CDS
TATTCACGCACCAAGCCCAA+AGG 0.625825 6_1:+55027159 None:intergenic
GGTGAAGTGAGATTGCCACC+AGG 0.631641 6_1:-55028150 Msa0889060:CDS
TCGGATAGACGAGACTCTTG+AGG 0.632834 6_1:+55027220 None:intergenic
TCAGTTCTGGAACTATGAGG+TGG 0.658933 6_1:+55027621 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.664397 6_1:-55027813 Msa0889060:CDS
CAGTAGCAACAACTTTGGTG+AGG 0.679751 6_1:-55027368 Msa0889060:CDS
AAATGGGAACCAATCCAACA+GGG 0.692548 6_1:-55027758 Msa0889060:CDS
GGATGAAAACGGAAACCTGG+TGG 0.761895 6_1:+55028135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATATGAATGAAT+TGG - chr6_1:55027594-55027613 Msa0889060:CDS 10.0%
!! ATTATTAATATGAATGAATT+GGG - chr6_1:55027595-55027614 Msa0889060:CDS 10.0%
!! TATTATTAATATGAATGAAT+TGG - chr6_1:55027594-55027613 Msa0889060:CDS 10.0%
!! ATTATTAATATGAATGAATT+GGG - chr6_1:55027595-55027614 Msa0889060:CDS 10.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6_1:55027530-55027549 Msa0889060:intron 20.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6_1:55027531-55027550 Msa0889060:intron 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6_1:55027547-55027566 Msa0889060:intron 20.0%
!! AGAAATCATAGAAAACTATT+GGG + chr6_1:55028097-55028116 None:intergenic 20.0%
!! AAGAAATCATAGAAAACTAT+TGG + chr6_1:55028098-55028117 None:intergenic 20.0%
!!! AATAGTTTTCTATGATTTCT+TGG - chr6_1:55028097-55028116 Msa0889060:CDS 20.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6_1:55027530-55027549 Msa0889060:intron 20.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6_1:55027531-55027550 Msa0889060:intron 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6_1:55027547-55027566 Msa0889060:intron 20.0%
!! AGAAATCATAGAAAACTATT+GGG + chr6_1:55028097-55028116 None:intergenic 20.0%
!! AAGAAATCATAGAAAACTAT+TGG + chr6_1:55028098-55028117 None:intergenic 20.0%
!!! AATAGTTTTCTATGATTTCT+TGG - chr6_1:55028097-55028116 Msa0889060:CDS 20.0%
! TCTTTCTCTTTACAGATAAA+GGG + chr6_1:55026870-55026889 None:intergenic 25.0%
! TTCTTTCTCTTTACAGATAA+AGG + chr6_1:55026871-55026890 None:intergenic 25.0%
! TAAAGAGAAAGAAGATAAGA+TGG - chr6_1:55026878-55026897 Msa0889060:CDS 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6_1:55026903-55026922 Msa0889060:CDS 25.0%
! AAGATCAATTTCAGAAATGA+TGG + chr6_1:55027030-55027049 None:intergenic 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6_1:55027089-55027108 None:intergenic 25.0%
! TATTAGAAGTTATCATGTTC+CGG + chr6_1:55027182-55027201 None:intergenic 25.0%
!!! GGTTTTGTAGAATGAAAATT+GGG - chr6_1:55027616-55027635 Msa0889060:CDS 25.0%
!!! TGGTTGTTTTTGTTGAAATT+TGG - chr6_1:55027765-55027784 Msa0889060:CDS 25.0%
!!! GGTTGTTTTTGTTGAAATTT+GGG - chr6_1:55027766-55027785 Msa0889060:CDS 25.0%
!!! GTTGTTTTTGTTGAAATTTG+GGG - chr6_1:55027767-55027786 Msa0889060:CDS 25.0%
! TCTTTCTCTTTACAGATAAA+GGG + chr6_1:55026870-55026889 None:intergenic 25.0%
! TTCTTTCTCTTTACAGATAA+AGG + chr6_1:55026871-55026890 None:intergenic 25.0%
! TAAAGAGAAAGAAGATAAGA+TGG - chr6_1:55026878-55026897 Msa0889060:CDS 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6_1:55026903-55026922 Msa0889060:CDS 25.0%
! AAGATCAATTTCAGAAATGA+TGG + chr6_1:55027030-55027049 None:intergenic 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6_1:55027089-55027108 None:intergenic 25.0%
! TATTAGAAGTTATCATGTTC+CGG + chr6_1:55027182-55027201 None:intergenic 25.0%
!!! GGTTTTGTAGAATGAAAATT+GGG - chr6_1:55027616-55027635 Msa0889060:CDS 25.0%
!!! TGGTTGTTTTTGTTGAAATT+TGG - chr6_1:55027765-55027784 Msa0889060:CDS 25.0%
!!! GGTTGTTTTTGTTGAAATTT+GGG - chr6_1:55027766-55027785 Msa0889060:CDS 25.0%
!!! GTTGTTTTTGTTGAAATTTG+GGG - chr6_1:55027767-55027786 Msa0889060:CDS 25.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6_1:55027250-55027269 Msa0889060:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6_1:55027426-55027445 Msa0889060:CDS 30.0%
!! GGGTTTTGTAGAATGAAAAT+TGG - chr6_1:55027615-55027634 Msa0889060:CDS 30.0%
TCTGATACCATGTTGAAATT+TGG - chr6_1:55027967-55027986 Msa0889060:intron 30.0%
CTGATACCATGTTGAAATTT+GGG - chr6_1:55027968-55027987 Msa0889060:intron 30.0%
TGATACCATGTTGAAATTTG+GGG - chr6_1:55027969-55027988 Msa0889060:intron 30.0%
! CTTGAGAAGAGTATATAAAG+AGG + chr6_1:55028040-55028059 None:intergenic 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6_1:55028156-55028175 None:intergenic 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6_1:55027250-55027269 Msa0889060:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6_1:55027426-55027445 Msa0889060:CDS 30.0%
!! GGGTTTTGTAGAATGAAAAT+TGG - chr6_1:55027615-55027634 Msa0889060:CDS 30.0%
TCTGATACCATGTTGAAATT+TGG - chr6_1:55027967-55027986 Msa0889060:intron 30.0%
CTGATACCATGTTGAAATTT+GGG - chr6_1:55027968-55027987 Msa0889060:intron 30.0%
TGATACCATGTTGAAATTTG+GGG - chr6_1:55027969-55027988 Msa0889060:intron 30.0%
! CTTGAGAAGAGTATATAAAG+AGG + chr6_1:55028040-55028059 None:intergenic 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6_1:55028156-55028175 None:intergenic 30.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6_1:55026953-55026972 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6_1:55026963-55026982 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6_1:55026980-55026999 Msa0889060:intron 35.0%
! AAATGATGGAAGCAGGTAAA+GGG + chr6_1:55027016-55027035 None:intergenic 35.0%
! ATTTCAGAAATGATGGAAGC+AGG + chr6_1:55027023-55027042 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6_1:55027077-55027096 None:intergenic 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6_1:55027242-55027261 Msa0889060:CDS 35.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6_1:55027299-55027318 Msa0889060:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6_1:55027300-55027319 Msa0889060:CDS 35.0%
! TGGAAAGCAACTGGTTTATT+TGG - chr6_1:55027356-55027375 Msa0889060:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6_1:55027396-55027415 Msa0889060:CDS 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6_1:55027469-55027488 None:intergenic 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6_1:55027522-55027541 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6_1:55027523-55027542 None:intergenic 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6_1:55027745-55027764 Msa0889060:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6_1:55027791-55027810 Msa0889060:CDS 35.0%
! GAGAAGAGTATATAAAGAGG+AGG + chr6_1:55027835-55027854 None:intergenic 35.0%
! GAGGAGAAGAGTATATAAAG+AGG + chr6_1:55027838-55027857 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6_1:55027791-55027810 Msa0889060:CDS 35.0%
! GAGAAGAGTATATAAAGAGG+AGG + chr6_1:55027835-55027854 None:intergenic 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6_1:55028153-55028172 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6_1:55028211-55028230 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6_1:55028212-55028231 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6_1:55026953-55026972 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6_1:55026963-55026982 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6_1:55026980-55026999 Msa0889060:intron 35.0%
! AAATGATGGAAGCAGGTAAA+GGG + chr6_1:55027016-55027035 None:intergenic 35.0%
! ATTTCAGAAATGATGGAAGC+AGG + chr6_1:55027023-55027042 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6_1:55027077-55027096 None:intergenic 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6_1:55027242-55027261 Msa0889060:CDS 35.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6_1:55027299-55027318 Msa0889060:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6_1:55027300-55027319 Msa0889060:CDS 35.0%
! TGGAAAGCAACTGGTTTATT+TGG - chr6_1:55027356-55027375 Msa0889060:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6_1:55027396-55027415 Msa0889060:CDS 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6_1:55027469-55027488 None:intergenic 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6_1:55027522-55027541 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6_1:55027523-55027542 None:intergenic 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6_1:55027745-55027764 Msa0889060:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6_1:55027791-55027810 Msa0889060:CDS 35.0%
! GAGAAGAGTATATAAAGAGG+AGG + chr6_1:55027835-55027854 None:intergenic 35.0%
! GAGGAGAAGAGTATATAAAG+AGG + chr6_1:55027838-55027857 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6_1:55027791-55027810 Msa0889060:CDS 35.0%
! GAGAAGAGTATATAAAGAGG+AGG + chr6_1:55027835-55027854 None:intergenic 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6_1:55028153-55028172 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6_1:55028211-55028230 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6_1:55028212-55028231 None:intergenic 35.0%
! GAAATGATGGAAGCAGGTAA+AGG + chr6_1:55027017-55027036 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6_1:55027045-55027064 Msa0889060:intron 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6_1:55027046-55027065 Msa0889060:intron 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6_1:55027065-55027084 None:intergenic 40.0%
TGAAGCACAGACACAAAGAT+CGG - chr6_1:55027126-55027145 Msa0889060:intron 40.0%
TTGTTTGCAGTAGTAGTACG+TGG + chr6_1:55027205-55027224 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6_1:55027212-55027231 Msa0889060:CDS 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6_1:55027261-55027280 Msa0889060:CDS 40.0%
TTGGTTCCCATTTGGATACT+TGG + chr6_1:55027309-55027328 None:intergenic 40.0%
AAATGGGAACCAATCCAACA+GGG - chr6_1:55027316-55027335 Msa0889060:CDS 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6_1:55027459-55027478 None:intergenic 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6_1:55027457-55027476 Msa0889060:intron 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6_1:55027521-55027540 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6_1:55027642-55027661 Msa0889060:intron 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6_1:55027650-55027669 Msa0889060:intron 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6_1:55027671-55027690 Msa0889060:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6_1:55027793-55027812 None:intergenic 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr6_1:55027952-55027971 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr6_1:55027953-55027972 None:intergenic 40.0%
TTAGGCCCCAAATTTCAACA+TGG + chr6_1:55027775-55027794 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6_1:55027793-55027812 None:intergenic 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6_1:55028150-55028169 None:intergenic 40.0%
! GAAATGATGGAAGCAGGTAA+AGG + chr6_1:55027017-55027036 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6_1:55027045-55027064 Msa0889060:intron 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6_1:55027046-55027065 Msa0889060:intron 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6_1:55027065-55027084 None:intergenic 40.0%
TGAAGCACAGACACAAAGAT+CGG - chr6_1:55027126-55027145 Msa0889060:intron 40.0%
TTGTTTGCAGTAGTAGTACG+TGG + chr6_1:55027205-55027224 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6_1:55027212-55027231 Msa0889060:CDS 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6_1:55027261-55027280 Msa0889060:CDS 40.0%
TTGGTTCCCATTTGGATACT+TGG + chr6_1:55027309-55027328 None:intergenic 40.0%
AAATGGGAACCAATCCAACA+GGG - chr6_1:55027316-55027335 Msa0889060:CDS 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6_1:55027459-55027478 None:intergenic 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6_1:55027457-55027476 Msa0889060:intron 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6_1:55027521-55027540 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6_1:55027642-55027661 Msa0889060:intron 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6_1:55027650-55027669 Msa0889060:intron 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6_1:55027671-55027690 Msa0889060:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6_1:55027793-55027812 None:intergenic 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + chr6_1:55027952-55027971 None:intergenic 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + chr6_1:55027953-55027972 None:intergenic 40.0%
TTAGGCCCCAAATTTCAACA+TGG + chr6_1:55027775-55027794 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6_1:55027793-55027812 None:intergenic 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6_1:55028150-55028169 None:intergenic 40.0%
GTTGGATGAAAACGGAAACC+TGG + chr6_1:55026945-55026964 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6_1:55027056-55027075 Msa0889060:intron 45.0%
CACAAAGATCGGACACAACA+TGG - chr6_1:55027137-55027156 Msa0889060:intron 45.0%
ACACTGACACATTCAGACAC+CGG - chr6_1:55027160-55027179 Msa0889060:intron 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6_1:55027317-55027336 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6_1:55027315-55027334 Msa0889060:CDS 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6_1:55027328-55027347 None:intergenic 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6_1:55027347-55027366 Msa0889060:CDS 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6_1:55027456-55027475 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6_1:55027662-55027681 Msa0889060:intron 45.0%
CCAAAGTTGTTGCTACTGCT+TGG + chr6_1:55027704-55027723 None:intergenic 45.0%
CCAAGCAGTAGCAACAACTT+TGG - chr6_1:55027701-55027720 Msa0889060:intron 45.0%
CAGTAGCAACAACTTTGGTG+AGG - chr6_1:55027706-55027725 Msa0889060:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG + chr6_1:55027876-55027895 None:intergenic 45.0%
! CTTGGTGCGTGAATAGGTTT+AGG - chr6_1:55027923-55027942 Msa0889060:intron 45.0%
AGAGTCTCGTCTATCCAATG+TGG - chr6_1:55028058-55028077 Msa0889060:CDS 45.0%
GAGTCTCGTCTATCCAATGT+GGG - chr6_1:55028059-55028078 Msa0889060:CDS 45.0%
GTCTATCCAATGTGGGACTT+GGG - chr6_1:55028066-55028085 Msa0889060:CDS 45.0%
GAAAAACCCAAGTCCCACAT+TGG + chr6_1:55027876-55027895 None:intergenic 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6_1:55026945-55026964 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6_1:55027056-55027075 Msa0889060:intron 45.0%
CACAAAGATCGGACACAACA+TGG - chr6_1:55027137-55027156 Msa0889060:intron 45.0%
ACACTGACACATTCAGACAC+CGG - chr6_1:55027160-55027179 Msa0889060:intron 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6_1:55027317-55027336 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6_1:55027315-55027334 Msa0889060:CDS 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6_1:55027328-55027347 None:intergenic 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6_1:55027347-55027366 Msa0889060:CDS 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6_1:55027456-55027475 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6_1:55027662-55027681 Msa0889060:intron 45.0%
CCAAAGTTGTTGCTACTGCT+TGG + chr6_1:55027704-55027723 None:intergenic 45.0%
CCAAGCAGTAGCAACAACTT+TGG - chr6_1:55027701-55027720 Msa0889060:intron 45.0%
CAGTAGCAACAACTTTGGTG+AGG - chr6_1:55027706-55027725 Msa0889060:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG + chr6_1:55027876-55027895 None:intergenic 45.0%
! CTTGGTGCGTGAATAGGTTT+AGG - chr6_1:55027923-55027942 Msa0889060:intron 45.0%
AGAGTCTCGTCTATCCAATG+TGG - chr6_1:55028058-55028077 Msa0889060:CDS 45.0%
GAGTCTCGTCTATCCAATGT+GGG - chr6_1:55028059-55028078 Msa0889060:CDS 45.0%
GTCTATCCAATGTGGGACTT+GGG - chr6_1:55028066-55028085 Msa0889060:CDS 45.0%
GAAAAACCCAAGTCCCACAT+TGG + chr6_1:55027876-55027895 None:intergenic 45.0%
GGATGAAAACGGAAACCTGG+TGG + chr6_1:55026942-55026961 None:intergenic 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6_1:55027329-55027348 Msa0889060:CDS 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6_1:55027333-55027352 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6_1:55027336-55027355 Msa0889060:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6_1:55027517-55027536 None:intergenic 50.0%
!! CCTTGCAAGCCGGTTTTGTA+AGG + chr6_1:55027803-55027822 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGCA+AGG - chr6_1:55027800-55027819 Msa0889060:CDS 50.0%
TCGGATAGACGAGACTCTTG+AGG + chr6_1:55027857-55027876 None:intergenic 50.0%
AGAGTCTCGTCTATCCGATG+TGG - chr6_1:55027859-55027878 Msa0889060:intron 50.0%
GAGTCTCGTCTATCCGATGT+GGG - chr6_1:55027860-55027879 Msa0889060:intron 50.0%
GTCTATCCGATGTGGGACTT+GGG - chr6_1:55027867-55027886 Msa0889060:intron 50.0%
ATTCACGCACCAAGCCCAAA+GGG + chr6_1:55027917-55027936 None:intergenic 50.0%
TATTCACGCACCAAGCCCAA+AGG + chr6_1:55027918-55027937 None:intergenic 50.0%
!! TTTGGGCTTGGTGCGTGAAT+AGG - chr6_1:55027917-55027936 Msa0889060:intron 50.0%
GGTGCGTGAATAGGTTTAGG+CGG - chr6_1:55027926-55027945 Msa0889060:intron 50.0%
!! CCTTGCAAGCCGGTTTTGTA+AGG + chr6_1:55027803-55027822 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGCA+AGG - chr6_1:55027800-55027819 Msa0889060:CDS 50.0%
CGTCTATCCAATGTGGGACT+TGG - chr6_1:55028065-55028084 Msa0889060:CDS 50.0%
! ACGATGCTCCCATCCTCTTT+TGG - chr6_1:55028200-55028219 Msa0889060:CDS 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6_1:55026942-55026961 None:intergenic 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6_1:55027329-55027348 Msa0889060:CDS 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6_1:55027333-55027352 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6_1:55027336-55027355 Msa0889060:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6_1:55027517-55027536 None:intergenic 50.0%
!! CCTTGCAAGCCGGTTTTGTA+AGG + chr6_1:55027803-55027822 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGCA+AGG - chr6_1:55027800-55027819 Msa0889060:CDS 50.0%
TCGGATAGACGAGACTCTTG+AGG + chr6_1:55027857-55027876 None:intergenic 50.0%
AGAGTCTCGTCTATCCGATG+TGG - chr6_1:55027859-55027878 Msa0889060:intron 50.0%
GAGTCTCGTCTATCCGATGT+GGG - chr6_1:55027860-55027879 Msa0889060:intron 50.0%
GTCTATCCGATGTGGGACTT+GGG - chr6_1:55027867-55027886 Msa0889060:intron 50.0%
ATTCACGCACCAAGCCCAAA+GGG + chr6_1:55027917-55027936 None:intergenic 50.0%
TATTCACGCACCAAGCCCAA+AGG + chr6_1:55027918-55027937 None:intergenic 50.0%
!! TTTGGGCTTGGTGCGTGAAT+AGG - chr6_1:55027917-55027936 Msa0889060:intron 50.0%
GGTGCGTGAATAGGTTTAGG+CGG - chr6_1:55027926-55027945 Msa0889060:intron 50.0%
!! CCTTGCAAGCCGGTTTTGTA+AGG + chr6_1:55027803-55027822 None:intergenic 50.0%
!! CCTTACAAAACCGGCTTGCA+AGG - chr6_1:55027800-55027819 Msa0889060:CDS 50.0%
CGTCTATCCAATGTGGGACT+TGG - chr6_1:55028065-55028084 Msa0889060:CDS 50.0%
! ACGATGCTCCCATCCTCTTT+TGG - chr6_1:55028200-55028219 Msa0889060:CDS 50.0%
GGTGAAGTGAGATTGCCACC+AGG - chr6_1:55026924-55026943 Msa0889060:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6_1:55027500-55027519 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6_1:55027503-55027522 Msa0889060:intron 55.0%
!! CAAAACCGGCTTGCAAGGTG+AGG - chr6_1:55027805-55027824 Msa0889060:CDS 55.0%
GCAATCCTCACCTTGCAAGC+CGG + chr6_1:55027813-55027832 None:intergenic 55.0%
CGTCTATCCGATGTGGGACT+TGG - chr6_1:55027866-55027885 Msa0889060:intron 55.0%
!! CAAAACCGGCTTGCAAGGTG+AGG - chr6_1:55027805-55027824 Msa0889060:CDS 55.0%
GCAATCCTCACCTTGCAAGC+CGG + chr6_1:55027813-55027832 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG - chr6_1:55026924-55026943 Msa0889060:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6_1:55027500-55027519 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6_1:55027503-55027522 Msa0889060:intron 55.0%
!! CAAAACCGGCTTGCAAGGTG+AGG - chr6_1:55027805-55027824 Msa0889060:CDS 55.0%
GCAATCCTCACCTTGCAAGC+CGG + chr6_1:55027813-55027832 None:intergenic 55.0%
CGTCTATCCGATGTGGGACT+TGG - chr6_1:55027866-55027885 Msa0889060:intron 55.0%
!! CAAAACCGGCTTGCAAGGTG+AGG - chr6_1:55027805-55027824 Msa0889060:CDS 55.0%
GCAATCCTCACCTTGCAAGC+CGG + chr6_1:55027813-55027832 None:intergenic 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6_1:55027508-55027527 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6_1:55027508-55027527 None:intergenic 60.0%
! AGGGCGTGGGGGGGTGTATT+GGG + chr6_1:55027898-55027917 None:intergenic 65.0%
! AAGGGCGTGGGGGGGTGTAT+TGG + chr6_1:55027899-55027918 None:intergenic 65.0%
ATACACCCCCCCACGCCCTT+TGG - chr6_1:55027899-55027918 Msa0889060:intron 65.0%
TACACCCCCCCACGCCCTTT+GGG - chr6_1:55027900-55027919 Msa0889060:intron 65.0%
! ACCAAGCCCAAAGGGCGTGG+GGG + chr6_1:55027909-55027928 None:intergenic 65.0%
! CACCAAGCCCAAAGGGCGTG+GGG + chr6_1:55027910-55027929 None:intergenic 65.0%
! GCACCAAGCCCAAAGGGCGT+GGG + chr6_1:55027911-55027930 None:intergenic 65.0%
! AGGGCGTGGGGGGGTGTATT+GGG + chr6_1:55027898-55027917 None:intergenic 65.0%
! AAGGGCGTGGGGGGGTGTAT+TGG + chr6_1:55027899-55027918 None:intergenic 65.0%
ATACACCCCCCCACGCCCTT+TGG - chr6_1:55027899-55027918 Msa0889060:intron 65.0%
TACACCCCCCCACGCCCTTT+GGG - chr6_1:55027900-55027919 Msa0889060:intron 65.0%
! ACCAAGCCCAAAGGGCGTGG+GGG + chr6_1:55027909-55027928 None:intergenic 65.0%
! CACCAAGCCCAAAGGGCGTG+GGG + chr6_1:55027910-55027929 None:intergenic 65.0%
! GCACCAAGCCCAAAGGGCGT+GGG + chr6_1:55027911-55027930 None:intergenic 65.0%
! CAAGCCCAAAGGGCGTGGGG+GGG + chr6_1:55027907-55027926 None:intergenic 70.0%
! CCAAGCCCAAAGGGCGTGGG+GGG + chr6_1:55027908-55027927 None:intergenic 70.0%
CGCACCAAGCCCAAAGGGCG+TGG + chr6_1:55027912-55027931 None:intergenic 70.0%
! CAAGCCCAAAGGGCGTGGGG+GGG + chr6_1:55027907-55027926 None:intergenic 70.0%
! CCAAGCCCAAAGGGCGTGGG+GGG + chr6_1:55027908-55027927 None:intergenic 70.0%
CGCACCAAGCCCAAAGGGCG+TGG + chr6_1:55027912-55027931 None:intergenic 70.0%
CCCCCCACGCCCTTTGGGCT+TGG - chr6_1:55027905-55027924 Msa0889060:intron 75.0%
CCCCCCACGCCCTTTGGGCT+TGG - chr6_1:55027905-55027924 Msa0889060:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 55026864 55028232 55026864 ID=Msa0889060;Name=Msa0889060
chr6_1 mRNA 55026864 55028232 55026864 ID=Msa0889060-mRNA-1;Parent=Msa0889060;Name=Msa0889060-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|5|0|268
chr6_1 exon 55028019 55028232 55028019 ID=Msa0889060-mRNA-1:exon:11033;Parent=Msa0889060-mRNA-1
chr6_1 exon 55027728 55027832 55027728 ID=Msa0889060-mRNA-1:exon:11032;Parent=Msa0889060-mRNA-1
chr6_1 exon 55027572 55027648 55027572 ID=Msa0889060-mRNA-1:exon:11031;Parent=Msa0889060-mRNA-1
chr6_1 exon 55027170 55027470 55027170 ID=Msa0889060-mRNA-1:exon:11030;Parent=Msa0889060-mRNA-1
chr6_1 exon 55026864 55026973 55026864 ID=Msa0889060-mRNA-1:exon:11029;Parent=Msa0889060-mRNA-1
chr6_1 CDS 55028019 55028232 55028019 ID=Msa0889060-mRNA-1:cds;Parent=Msa0889060-mRNA-1
chr6_1 CDS 55027728 55027832 55027728 ID=Msa0889060-mRNA-1:cds;Parent=Msa0889060-mRNA-1
chr6_1 CDS 55027572 55027648 55027572 ID=Msa0889060-mRNA-1:cds;Parent=Msa0889060-mRNA-1
chr6_1 CDS 55027170 55027470 55027170 ID=Msa0889060-mRNA-1:cds;Parent=Msa0889060-mRNA-1
chr6_1 CDS 55026864 55026973 55026864 ID=Msa0889060-mRNA-1:cds;Parent=Msa0889060-mRNA-1
Gene Sequence

>Msa0889060

ATGCCCTTTATCTGTAAAGAGAAAGAAGATAAGATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTCTCCCTTTACCTGCTTCCATCATTTCTGAAATTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCAATCCAACAGGGCTACAAACTCTGGTTACTGGAAAGCAACTGGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGAATGAATATCACCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGCTGGTGCTAAAAATGGAGTGAAAGGAGTGAAGCCAAGCAGTAGCAACAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAGCTTCAAGTTCAAAAGTGGTTGTTTTTGTTGAAATTTGGGGCCTAACTCATCCTTACAAAACCGGCTTGCAAGGTGAGGATTGCCTCCTCTTTATATACTCTTCTCCTCAAGAGTCTCGTCTATCCGATGTGGGACTTGGGTTTTTCCCAATACACCCCCCCACGCCCTTTGGGCTTGTGAAGAAGAACAATTCTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCATTCACGATGCTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>Msa0889060

MPFICKEKEDKMEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSLPLPASIISEIDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNQSNRATNSGYWKATGKPPHSSRTDWIMNEYHLTSSHSNPLNENWVLCRIFLKRRAGAKNGVKGVKPSSSNNFGEVKKNSASASSSKVVVFVEIWGLTHPYKTGLQGEDCLLFIYSSPQESRLSDVGLGFFPIHPPTPFGLVKKNNSDASSSSITNEHENEDSSNSFTMLPSSFGNA*