AlfalfaGEDB | Msa0889360

M. sativa cultivar zhongmu-4 / Msa0889360

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889360	RHN52768.1	97.030	303	9	0	1	303	347	649	0.0	613

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889360	sp\|Q9FF29\|PR5K_ARATH	58.033	305	120	5	1	300	329	630	2.42e-121	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889360	A0A396HJH9	97.030	303	9	0	1	303	347	649	0.0	613

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889360	MtrunA17_Chr6g0484051	97.030	303	9	0	1	303	347	649	0.0	613
Msa0889360	MtrunA17_Chr6g0483981	79.276	304	62	1	1	303	266	569	2.27e-176	501
Msa0889360	MtrunA17_Chr6g0483821	78.618	304	64	1	1	303	358	661	1.80e-174	499
Msa0889360	MtrunA17_Chr6g0484071	75.987	304	72	1	1	303	57	360	2.63e-174	487
Msa0889360	MtrunA17_Chr6g0484021	78.477	302	64	1	1	301	305	606	5.34e-173	493
Msa0889360	MtrunA17_Chr6g0483811	75.987	304	71	2	1	303	57	359	1.93e-171	480
Msa0889360	MtrunA17_Chr6g0484041	77.741	301	66	1	1	300	321	621	1.14e-170	488
Msa0889360	MtrunA17_Chr6g0483851	76.316	304	71	1	1	303	409	712	5.56e-169	487
Msa0889360	MtrunA17_Chr6g0483791	75.987	304	71	2	1	303	368	670	1.77e-165	476
Msa0889360	MtrunA17_Chr6g0484031	73.422	301	60	2	1	300	221	502	4.26e-155	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889360	AT5G38280.1	58.033	305	120	5	1	300	329	630	2.46e-122	366
Msa0889360	AT5G38280.2	58.033	305	120	5	1	300	329	630	4.64e-122	366
Msa0889360	AT4G18250.1	57.333	300	116	6	1	291	353	649	3.71e-118	356
Msa0889360	AT1G66980.4	55.844	308	127	4	1	302	786	1090	8.38e-118	365
Msa0889360	AT1G66980.1	55.844	308	127	4	1	302	803	1107	1.15e-117	365
Msa0889360	AT1G70250.1	57.377	305	119	6	1	298	457	757	1.36e-117	358
Msa0889360	AT1G66980.3	55.844	308	127	4	1	302	830	1134	2.86e-117	365
Msa0889360	AT1G66980.2	55.844	308	127	4	1	302	832	1136	3.14e-117	365
Msa0889360	AT1G66910.2	54.839	310	124	5	1	301	343	645	3.56e-117	353
Msa0889360	AT1G66910.1	54.839	310	124	5	1	301	346	648	4.68e-117	353

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Find 77 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATCAATCTCTAAGT+TGG	0.399049	6_1:+56492090	Msa0889360:CDS
AAACTAGGTCAAGGTGGTTA+TGG	0.396145	6_1:+56491834	Msa0889360:CDS
AAATCTGATGTTTATAGTTA+TGG	0.314925	6_1:+56492374	Msa0889360:CDS
AACAACTTCGAAGTGAAACT+AGG	0.582493	6_1:+56491819	Msa0889360:CDS
AACCTATCAATCTCTAAGTT+GGG	0.483050	6_1:+56492091	Msa0889360:CDS
AAGATATTGAATGCATCCAA+AGG	0.610574	6_1:+56491903	Msa0889360:CDS
AAGTTTCTATTCCACAACTC+AGG	0.577032	6_1:-56492335	None:intergenic
AATGCACCATAATCCTACAA+TGG	0.670726	6_1:-56492564	None:intergenic
AGAAGGCAATATGAATTCAT+TGG	0.389332	6_1:+56492637	Msa0889360:CDS
AGACATGAATTCATAAATCA+GGG	0.532830	6_1:-56492027	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATATTGAATGCATCCAA+AGG	+	chr6_1:56491903-56491922	Msa0889360:CDS	30.0%
AGGTGAAGAATTTATGAATG+AGG	+	chr6_1:56491929-56491948	Msa0889360:CDS	30.0%
GTCAAAACAAAATCCAAGAA+GGG	-	chr6_1:56491994-56492013	None:intergenic	30.0%
AAACCTATCAATCTCTAAGT+TGG	+	chr6_1:56492090-56492109	Msa0889360:CDS	30.0%
AACCTATCAATCTCTAAGTT+GGG	+	chr6_1:56492091-56492110	Msa0889360:CDS	30.0%
AGTCCAAAATCAGATATCTT+TGG	-	chr6_1:56492242-56492261	None:intergenic	30.0%
TAGTTATGGAATGATGTTGT+TGG	+	chr6_1:56492388-56492407	Msa0889360:CDS	30.0%
ATGATGTTGTTGGAAATGAT+TGG	+	chr6_1:56492398-56492417	Msa0889360:CDS	30.0%
TGAGAAATACTTTCCTGATT+GGG	+	chr6_1:56492460-56492479	Msa0889360:CDS	30.0%
AGAAGGCAATATGAATTCAT+TGG	+	chr6_1:56492637-56492656	Msa0889360:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	56491813	56493654	56491813	ID=Msa0889360;Name=Msa0889360
chr6_1	mRNA	56491813	56493654	56491813	ID=Msa0889360-mRNA-1;Parent=Msa0889360;Name=Msa0889360-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|333
chr6_1	exon	56491813	56492720	56491813	ID=Msa0889360-mRNA-1:exon:11147;Parent=Msa0889360-mRNA-1
chr6_1	exon	56493561	56493654	56493561	ID=Msa0889360-mRNA-1:exon:11148;Parent=Msa0889360-mRNA-1
chr6_1	CDS	56491813	56492720	56491813	ID=Msa0889360-mRNA-1:cds;Parent=Msa0889360-mRNA-1
chr6_1	CDS	56493561	56493654	56493561	ID=Msa0889360-mRNA-1:cds;Parent=Msa0889360-mRNA-1

Gene Sequence

>Msa0889360

ATGACCAACAACTTCGAAGTGAAACTAGGTCAAGGTGGTTATGGTACGGTATACAAAGAAAAGCTACTCAATGACCGTCTTGTGGCCGTGAAGATATTGAATGCATCCAAAGGAAAAGGTGAAGAATTTATGAATGAGGTTTCTAGCATTACTAAAACCTCTCACGTTAATGTTGTTGCCCTTCTTGGATTTTGTTTTGACGGTCGCAAAAAAGCCCTGATTTATGAATTCATGTCTAATGGTTCGCTTGACAAATTTATTTACAACGCGCAACATGAAACCTATCAATCTCTAAGTTGGGAGATTCTTTATGAAATTGCTAAAGGGATAGCTCGAGGGTTGGAGTACCTGCATAGAGGATGTAGTACTCGAATCTTACATTTTGATATAAAACCACATAATATTTTATTAGATGAGAATTTTTGTCCAAAGATATCTGATTTTGGACTTGCAAGACTTTGTCTCAAGAAAGAAAGCATTATTTCGATGTCCGGTGCTAGAGGAACAATGGGATATGTAGCTCCTGAGTTGTGGAATAGAAACTTTGGAGGTGTTTCGTACAAATCTGATGTTTATAGTTATGGAATGATGTTGTTGGAAATGATTGGAGGAAGGAAAAACATTAGTGCCAATGCAAGTCATACAAGTGAGAAATACTTTCCTGATTGGGTATACAAAAGGTTTGATCTAGACACTGATTTGACACACGACGAAGTGATTGCCACAGAAGATGATATCGCAAAGAGAATGACCATTGTAGGATTATGGTGCATTCAAACACTTCCAAATGATAGACCTGCAATGAGTAGAGTTATTGAAATGTTAGAAGGCAATATGAATTCATTGGAAATACCACCCAAACCTATTCTTTCTTCTCCCACTAGATCACTACCAAAATCATCAATTTCGGAGTTGTTTGTTTGGGAAGAATACCTTGTTCGAAGCCTTCAAGAGAGGCTTGATGGAGGGTTGGTTGGGGAGAGTGCGGATTGTTGGACTTAA

Protein sequence

>Msa0889360

MTNNFEVKLGQGGYGTVYKEKLLNDRLVAVKILNASKGKGEEFMNEVSSITKTSHVNVVALLGFCFDGRKKALIYEFMSNGSLDKFIYNAQHETYQSLSWEILYEIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCLKKESIISMSGARGTMGYVAPELWNRNFGGVSYKSDVYSYGMMLLEMIGGRKNISANASHTSEKYFPDWVYKRFDLDTDLTHDEVIATEDDIAKRMTIVGLWCIQTLPNDRPAMSRVIEMLEGNMNSLEIPPKPILSSPTRSLPKSSISELFVWEEYLVRSLQERLDGGLVGESADCWT*