AlfalfaGEDB | Msa0889380

M. sativa cultivar zhongmu-4 / Msa0889380

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889380	XP_024641810.1	89.783	646	65	1	1	646	1	645	0.0	1198

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889380	sp\|F4HQ22\|LRL24_ARATH	42.904	613	278	23	41	633	34	594	2.71e-148	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889380	G7KMN1	86.997	646	62	2	1	646	1	624	0.0	1148

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0889380	MtrunA17_Chr6g0483821	68.666	667	176	11	1	646	7	661	882
Msa0889380	MtrunA17_Chr6g0484051	62.074	646	204	13	23	646	23	649	777
Msa0889380	MtrunA17_Chr6g0484071	93.889	360	22	0	287	646	1	360	707
Msa0889380	MtrunA17_Chr6g0483851	56.573	677	209	15	44	646	47	712	680
Msa0889380	MtrunA17_Chr6g0484021	86.022	372	52	0	273	644	235	606	664
Msa0889380	MtrunA17_Chr6g0483981	84.409	372	58	0	275	646	198	569	659
Msa0889380	MtrunA17_Chr6g0483791	53.926	675	262	15	6	646	11	670	652
Msa0889380	MtrunA17_Chr6g0484041	82.656	369	64	0	275	643	253	621	637
Msa0889380	MtrunA17_Chr6g0483811	78.611	360	76	1	287	646	1	359	590
Msa0889380	MtrunA17_Chr6g0484031	77.480	373	63	3	275	646	153	505	579

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0889380	AT1G66920.2	42.904	613	278	23	41	633	34	594	2.76e-149	446
Msa0889380	AT1G66910.2	40.689	639	310	21	43	645	41	646	1.86e-146	440
Msa0889380	AT1G66920.1	42.414	613	273	23	41	633	34	586	1.76e-145	436
Msa0889380	AT1G66910.1	40.562	641	311	22	43	645	41	649	8.64e-144	433
Msa0889380	AT1G67000.1	40.448	670	313	24	19	646	238	863	4.58e-139	428
Msa0889380	AT1G67000.1	27.652	264	164	11	4	261	5	247	2.57e-16	83.6
Msa0889380	AT5G38240.2	40.829	627	290	20	44	645	41	611	1.29e-137	416
Msa0889380	AT5G38250.1	39.580	619	306	17	44	645	41	608	2.03e-137	416
Msa0889380	AT5G38240.1	40.845	639	291	22	44	645	41	629	1.18e-136	414
Msa0889380	AT5G38260.1	38.367	649	321	21	6	631	15	607	1.00e-135	412

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Find 119 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATTGCATCTTTGAGT+TGG	0.433122	6_1:+56519702	Msa0889380:CDS
AAAGAGATATATGTAATGTT+TGG	0.298188	6_1:-56517438	None:intergenic
AAATGTCTATTCCACACTTC+TGG	0.331819	6_1:-56519947	None:intergenic
AAATTGTATAAAATTGCAAA+AGG	0.448362	6_1:+56519728	Msa0889380:CDS
AAATTGTTCGATTGAATATA+TGG	0.236801	6_1:+56518109	Msa0889380:CDS
AACAATTGCATCTTTGAGTT+GGG	0.411014	6_1:+56519703	Msa0889380:CDS
AACACTTAACATCTCGGTTT+AGG	0.349694	6_1:+56519315	Msa0889380:CDS
AACATCGAATATCCATTCTG+GGG	0.702136	6_1:+56517582	Msa0889380:CDS
AACTCGTTCAAGGATAAGCT+CGG	0.537186	6_1:+56519431	Msa0889380:CDS
AAGAAAGTACCATTAAACTG+AGG	0.710387	6_1:-56517777	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAGTATATGTCTATGATG+TGG	-	chr6_1:56517839-56517858	None:intergenic	30.0%
TCTCGAAGAATATTTGGATA+AGG	+	chr6_1:56518028-56518047	Msa0889380:CDS	30.0%
CTCGAAGAATATTTGGATAA+GGG	+	chr6_1:56518029-56518048	Msa0889380:CDS	30.0%
ATATTTGGATAAGGGATTTG+AGG	+	chr6_1:56518037-56518056	Msa0889380:CDS	30.0%
TGAGGCATGTTTAAATTGTT+TGG	+	chr6_1:56518076-56518095	Msa0889380:CDS	30.0%
GAGGCATGTTTAAATTGTTT+GGG	+	chr6_1:56518077-56518096	Msa0889380:CDS	30.0%
TTAAAATCAATAGACCCATC+TGG	-	chr6_1:56518170-56518189	None:intergenic	30.0%
GAAAACATACTATTGTGAAG+AGG	-	chr6_1:56518200-56518219	None:intergenic	30.0%
ATGAATCTGCAAAAGAATAG+AGG	-	chr6_1:56518447-56518466	None:intergenic	30.0%
GATTCATCTACTACTATAGA+AGG	+	chr6_1:56518460-56518479	Msa0889380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	56517422	56520447	56517422	ID=Msa0889380;Name=Msa0889380
chr6_1	mRNA	56517422	56520447	56517422	ID=Msa0889380-mRNA-1;Parent=Msa0889380;Name=Msa0889380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=10\|1\|1\|1\|1\|1\|3\|108\|646
chr6_1	exon	56517422	56518209	56517422	ID=Msa0889380-mRNA-1:exon:11144;Parent=Msa0889380-mRNA-1
chr6_1	exon	56518461	56518523	56518461	ID=Msa0889380-mRNA-1:exon:11145;Parent=Msa0889380-mRNA-1
chr6_1	exon	56519240	56520447	56519240	ID=Msa0889380-mRNA-1:exon:11146;Parent=Msa0889380-mRNA-1
chr6_1	five_prime_UTR	56517422	56517431	56517422	ID=Msa0889380-mRNA-1:five_prime_utr;Parent=Msa0889380-mRNA-1
chr6_1	CDS	56517432	56518209	56517432	ID=Msa0889380-mRNA-1:cds;Parent=Msa0889380-mRNA-1
chr6_1	CDS	56518461	56518523	56518461	ID=Msa0889380-mRNA-1:cds;Parent=Msa0889380-mRNA-1
chr6_1	CDS	56519240	56520339	56519240	ID=Msa0889380-mRNA-1:cds;Parent=Msa0889380-mRNA-1
chr6_1	three_prime_UTR	56520340	56520447	56520340	ID=Msa0889380-mRNA-1:three_prime_utr;Parent=Msa0889380-mRNA-1

Gene Sequence

>Msa0889380

ATGTTCCCAAACATTACATATATCTCTTTGTTATTTCACTTCTTATCGATAATAATCACTTCTTTTCCAACACAATCCCAGTCTCAACCAGTTCACGATTATTCAAGATGTAATGATGTCGACCATTCCTACAACTGCGGAAATATTTCCAACATCGAATATCCATTCTGGGGACAAAATCGTCCGTTTTACTGCGGCGCCGGCAACGCGTTTTACCTTAACTGCCACAACAACAGTATTACTACCATTCGATTATCATCACAAAATTTCACAGTACTTGATATTAACGCACAAAATCACACCATCAAACTCAAGAGAACAGACCTTGATCAAAATCTTTGTTCTCCTCAGTTTAATGGTACTTTCTTGTCTCCAACAACAATATTTCAGTACCTCCCAAGTGTCCACATCATAGACATATACTACAATTGTACTTACAATGTCTCTCAAAATTTACTTAAAAAATCTCTTTGTGGATCTCACAATCCTTCTTTTATTGATCATTATGAGCTGCTTTTCGAAAATCTAGATCAGAAGAGATGTGAGAAACATCTTAAAGTGCCGGTAGAATATGAAGATTATATTGATTATGACGATCTCGAAGAATATTTGGATAAGGGATTTGAGGTGGAATACAGTGTGAATGAGGCATGTTTAAATTGTTTGGGAAATGAAGGAAATTGTTCGATTGAATATATGGATAAACATGTTGATTGGTGCTATTATGATAATTGTCCAGATGGGTCTATTGATTTTAACTGTTCTCCTCTTCACAATAATTCATCTACTACTATAGAAGGTACGAAATTGAGCAGGCAAGGGAAAATGAAAATCATTATAGGTGTTGGAATTGCAGCAATGGTAGCATTGGTGATGTGCATCACAATTTGTTATTTTAGAGGCAAGTCATTCATACAACACTTAACATCTCGGTTTAGGACAAAGAATGATAAAAACATTGAAGCATTTTTAAAAGATCATGGAGCTCTATTGCAGAAAAGATATAAATATTCAGAAATAAAGAACATGACAAACTCGTTCAAGGATAAGCTCGGGCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAAGTTATTCAATGGTTGTCTTGTGGCAGTGAAGATATTGAATGCATCAAAAGGAAATGGTGAGGAATTTATTAATGAGGTTGCTAGTATTTCTAGAACCTCTCATGTTAATGTTGTCACCCTTCTTGGATTTTGTTTTGAAGGCAACAAAAAAGCTCTCATATATGAATTTATGTCAAATGGTTCTCTTGACAAATTTATTTACAATAAGGAACCTGAAACAATTGCATCTTTGAGTTGGGATAAATTGTATAAAATTGCAAAAGGGATAGCTCGTGGACTAGAGTACTTGCATGGAGGATGTACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTAGATGAGAATTTATGTCCGAAGATTTCAGATTTTGGACTTGCAAAGCTCTGTCTCAAGAAAGAGAGCATTGTTTCAATGTCAGATCAAAGAGGGACAATGGGGTATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGTTATGGAATGATGATGTTAGAAATGGTTGGAGGGAGGAAAAACATTAATGCTGATGCAGGTCACACAAGCGAGATATACTTTCCTCATTGGGTATATAGTAGGCTTGAGCTTGGTAATGATTTTAGACCTGATGAAATAATGGATAAGGAAGAAGATGAGATTGCAAGGAGAATGACCATTGTAGGTATGTGGTGTATTCAAACATTTCCTAATGATAGGCCTACAATGAGTAAAGTGATTGAAATGTTAGATGTTAGCATGAATTCGTTGGAAATGCCACCAAAACCATTGCTTTCTTCTCCGACTAGATCTGTATCAGAGTCTTCCACGTCCTAA

Protein sequence

>Msa0889380

MFPNITYISLLFHFLSIIITSFPTQSQSQPVHDYSRCNDVDHSYNCGNISNIEYPFWGQNRPFYCGAGNAFYLNCHNNSITTIRLSSQNFTVLDINAQNHTIKLKRTDLDQNLCSPQFNGTFLSPTTIFQYLPSVHIIDIYYNCTYNVSQNLLKKSLCGSHNPSFIDHYELLFENLDQKRCEKHLKVPVEYEDYIDYDDLEEYLDKGFEVEYSVNEACLNCLGNEGNCSIEYMDKHVDWCYYDNCPDGSIDFNCSPLHNNSSTTIEGTKLSRQGKMKIIIGVGIAAMVALVMCITICYFRGKSFIQHLTSRFRTKNDKNIEAFLKDHGALLQKRYKYSEIKNMTNSFKDKLGQGGFGVVYKGKLFNGCLVAVKILNASKGNGEEFINEVASISRTSHVNVVTLLGFCFEGNKKALIYEFMSNGSLDKFIYNKEPETIASLSWDKLYKIAKGIARGLEYLHGGCTTRILHFDIKPHNILLDENLCPKISDFGLAKLCLKKESIVSMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMMLEMVGGRKNINADAGHTSEIYFPHWVYSRLELGNDFRPDEIMDKEEDEIARRMTIVGMWCIQTFPNDRPTMSKVIEMLDVSMNSLEMPPKPLLSSPTRSVSESSTS*