AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0891520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891520 MtrunA17_Chr6g0472421 93.842 341 21 0 1 341 1 341 0.0 580
Msa0891520 MtrunA17_Chr1g0203601 55.362 345 106 10 1 340 1 302 1.22e-106 314
Msa0891520 MtrunA17_Chr5g0397881 47.205 322 105 8 7 286 5 303 7.08e-81 250
Msa0891520 MtrunA17_Chr3g0134031 47.248 218 99 3 23 227 14 228 2.76e-59 195
Msa0891520 MtrunA17_Chr5g0441531 38.519 270 125 7 23 286 15 249 1.18e-53 177
Msa0891520 MtrunA17_Chr5g0402291 43.636 220 82 3 26 230 2 194 4.33e-52 174
Msa0891520 MtrunA17_Chr7g0257331 43.000 200 78 2 27 226 16 179 1.78e-44 152
Msa0891520 MtrunA17_Chr6g0467041 50.394 127 63 0 32 158 21 147 1.03e-41 148
Msa0891520 MtrunA17_Chr5g0410881 61.111 108 42 0 17 124 16 123 1.80e-41 151
Msa0891520 MtrunA17_Chr7g0260331 51.220 123 59 1 3 124 18 140 3.58e-40 144
Msa0891520 MtrunA17_Chr1g0185131 59.223 103 38 1 31 133 30 128 8.26e-39 140
Msa0891520 MtrunA17_Chr8g0375041 33.214 280 141 5 26 297 2 243 9.67e-39 138
Msa0891520 MtrunA17_Chr8g0378061 50.388 129 64 0 34 162 23 151 1.14e-38 143
Msa0891520 MtrunA17_Chr4g0039891 65.217 92 32 0 33 124 12 103 2.16e-38 142
Msa0891520 MtrunA17_Chr1g0204741 61.702 94 36 0 31 124 38 131 6.98e-37 135
Msa0891520 MtrunA17_Chr8g0379701 59.596 99 39 1 26 124 6 103 1.62e-36 135
Msa0891520 MtrunA17_Chr4g0047421 35.122 205 95 4 31 231 31 201 2.72e-36 130
Msa0891520 MtrunA17_Chr3g0135831 58.511 94 39 0 31 124 44 137 8.75e-35 130
Msa0891520 MtrunA17_Chr2g0330821 49.565 115 58 0 31 145 77 191 3.07e-34 129
Msa0891520 MtrunA17_Chr6g0485571 57.143 98 42 0 27 124 5 102 4.27e-34 128
Msa0891520 MtrunA17_Chr4g0071051 59.140 93 38 0 31 123 99 191 1.27e-33 128
Msa0891520 MtrunA17_Chr2g0284481 57.609 92 39 0 33 124 15 106 1.21e-32 125
Msa0891520 MtrunA17_Chr8g0392001 59.574 94 37 1 32 124 21 114 2.38e-31 121
Msa0891520 MtrunA17_Chr1g0179321 56.757 74 32 0 19 92 35 108 6.63e-23 92.0
Msa0891520 MtrunA17_Chr4g0023771 57.377 61 25 1 33 92 15 75 1.20e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0891520 AT5G62020.1 47.619 336 102 9 26 340 16 298 2.88e-87 265
Msa0891520 AT4G11660.1 45.665 346 124 8 25 329 51 373 8.56e-79 246
Msa0891520 AT1G46264.1 47.525 202 104 1 28 227 29 230 4.32e-57 189
Msa0891520 AT4G36990.1 44.240 217 81 4 21 226 2 189 2.53e-52 174
Msa0891520 AT2G41690.1 43.434 198 94 2 31 228 38 217 1.62e-44 153
Msa0891520 AT4G17750.1 63.725 102 37 0 23 124 42 143 2.45e-40 148
Msa0891520 AT3G22830.1 60.000 110 44 0 15 124 43 152 5.63e-40 145
Msa0891520 AT1G32330.1 67.021 94 31 0 31 124 35 128 1.09e-39 146
Msa0891520 AT1G32330.2 67.021 94 31 0 31 124 35 128 1.12e-39 146
Msa0891520 AT3G02990.1 66.667 96 31 1 29 124 20 114 1.13e-38 143
Msa0891520 AT5G43840.1 59.406 101 41 0 31 131 17 117 3.70e-38 137
Msa0891520 AT3G51910.1 54.902 102 46 0 31 132 27 128 1.57e-37 135
Msa0891520 AT5G16820.1 65.625 96 32 1 29 124 24 118 7.40e-37 138
Msa0891520 AT5G16820.2 65.625 96 32 1 29 124 24 118 7.40e-37 138
Msa0891520 AT2G26150.1 59.574 94 38 0 31 124 42 135 2.96e-36 134
Msa0891520 AT2G26150.4 59.574 94 38 0 31 124 42 135 2.96e-36 134
Msa0891520 AT3G63350.1 56.701 97 42 0 27 123 22 118 5.76e-36 132
Msa0891520 AT5G03720.2 40.984 183 61 2 33 215 55 190 7.29e-36 134
Msa0891520 AT5G03720.1 40.984 183 61 2 33 215 55 190 7.29e-36 134
Msa0891520 AT4G13980.1 55.769 104 46 0 34 137 24 127 1.12e-35 135
Msa0891520 AT5G54070.1 55.660 106 43 1 30 131 68 173 4.66e-35 130
Msa0891520 AT3G24520.1 61.053 95 37 0 30 124 14 108 1.40e-34 129
Msa0891520 AT1G67970.1 39.634 164 80 3 33 195 19 164 1.69e-31 122
Msa0891520 AT5G45710.3 53.390 118 51 2 29 146 10 123 8.24e-29 114
Msa0891520 AT5G45710.1 53.390 118 51 2 29 146 10 123 8.24e-29 114
Msa0891520 AT4G18880.1 59.596 99 39 1 26 124 9 106 4.76e-28 113
Msa0891520 AT4G18870.1 32.121 165 91 5 34 180 14 175 5.56e-19 86.3
Msa0891520 AT4G18870.1 42.391 92 50 1 29 117 139 230 1.67e-18 84.7
Msa0891520 AT1G77570.1 39.773 88 48 3 34 117 27 113 5.76e-11 60.5

Find 114 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCCCAGAAGTTTCTTA+TGG 0.268062 6_1:+67083242 Msa0891520:three_prime_UTR
TGAAGAGAAAGAGAGAATTT+TGG 0.281852 6_1:-67081927 None:intergenic
AACTTCCCATAAGAAACTTC+TGG 0.282124 6_1:-67083248 None:intergenic
AGAGAAAACGGTTGTGAAAA+TGG 0.297213 6_1:+67082941 Msa0891520:CDS
CATAAGAAACTTCTGGGAAT+TGG 0.340004 6_1:-67083241 None:intergenic
ATCAAATCAAGCGGCGGATT+CGG 0.372696 6_1:-67082839 None:intergenic
ATTATTGTGGTGGTTCTAGA+AGG 0.389751 6_1:-67081898 None:intergenic
CGAGAAGGTACTAGTTAGTT+AGG 0.391090 6_1:-67081808 None:intergenic
TTATTGTGTTTGAAATACTT+TGG 0.401377 6_1:-67082171 None:intergenic
GAAATGAATCCGAAGCTATT+CGG 0.407926 6_1:+67082893 Msa0891520:CDS
TTCAGATTTAGGTTAGATAG+AGG 0.408003 6_1:+67083129 Msa0891520:three_prime_UTR
GTTATTTCGTGGAACGAAGA+TGG 0.410793 6_1:+67082099 Msa0891520:CDS
AGGTTCGGTGGAGAATAAAA+AGG 0.415845 6_1:-67081878 None:intergenic
AATTCCCAGAAGTTTCTTAT+GGG 0.416864 6_1:+67083243 Msa0891520:three_prime_UTR
GGGTGTTGCAACGGTGGTTG+TGG 0.423416 6_1:-67081995 None:intergenic
CATGGCTCCTTCGCCAGCTC+CGG 0.430979 6_1:+67081951 Msa0891520:exon
TAGGTTAGATAGAGGTAATG+AGG 0.433010 6_1:+67083137 Msa0891520:three_prime_UTR
TTCTCTCTTTCTCTTCATCA+TGG 0.438998 6_1:+67081933 Msa0891520:exon
GTCAAACTCCGGTGAAGAAC+AGG 0.439484 6_1:+67082598 Msa0891520:CDS
CTTGATGTAAGATTAATGAT+AGG 0.441886 6_1:-67083412 None:intergenic
AAGCTATTCGGTGTGGCGAT+TGG 0.446939 6_1:+67082905 Msa0891520:CDS
TGTGGTGGTTCTAGAAGGTT+CGG 0.451390 6_1:-67081893 None:intergenic
GGCTCCTTCGCCAGCTCCGG+TGG 0.461075 6_1:+67081954 Msa0891520:CDS
TTTGAAAATTCCCACCGGTC+AGG 0.467906 6_1:-67082380 None:intergenic
TCCTTCACCGGTACTGTTGA+CGG 0.472445 6_1:+67082544 Msa0891520:CDS
ACTTCCCATAAGAAACTTCT+GGG 0.474674 6_1:-67083247 None:intergenic
GCTTGATTTGATGCCGGCGG+TGG 0.475803 6_1:+67082850 Msa0891520:CDS
TGTTCTTCACCGGAGTTTGA+CGG 0.477010 6_1:-67082596 None:intergenic
CGGATTCACCGCCGTCATAC+CGG 0.477029 6_1:-67082819 None:intergenic
GATAGAGGTAATGAGGGTGT+AGG 0.478655 6_1:+67083144 Msa0891520:three_prime_UTR
ATAGAGGTAATGAGGGTGTA+GGG 0.481735 6_1:+67083145 Msa0891520:three_prime_UTR
AAATTGAAAATACAAAGAAA+AGG 0.491305 6_1:-67083300 None:intergenic
AGCTCCGCTGGTGCTCGTGC+CGG 0.493095 6_1:-67082641 None:intergenic
GGTAATACCAACGGCGATGC+CGG 0.493700 6_1:+67082565 Msa0891520:CDS
AAGCAAATTACTAGCAAAGA+TGG 0.500668 6_1:-67082148 None:intergenic
GCTATATCAACCTGGTTCTA+CGG 0.502826 6_1:+67082991 Msa0891520:CDS
ACGTGTGTCGTTTAACCGTA+TGG 0.506316 6_1:+67083216 Msa0891520:three_prime_UTR
TGATGCCGGCGGTGGCAAAA+CGG 0.508254 6_1:+67082858 Msa0891520:CDS
GCAAAACGAGTTAGAGAAAA+CGG 0.508281 6_1:+67082929 Msa0891520:CDS
ATTGAGTTGACGAACAAAGC+TGG 0.509850 6_1:-67082199 None:intergenic
ATCGCCACACCGAATAGCTT+CGG 0.514928 6_1:-67082902 None:intergenic
AATTGAAAATACAAAGAAAA+GGG 0.518680 6_1:-67083299 None:intergenic
GCTCAAGGAAGTAGAGAATC+CGG 0.523566 6_1:+67082800 Msa0891520:CDS
GGACGTGAAATCTGAACCGT+TGG 0.523870 6_1:+67083012 Msa0891520:CDS
GATTTCACGTCCGTAGAACC+AGG 0.525961 6_1:-67083001 None:intergenic
AAATTACTAGCAAAGATGGT+GGG 0.528220 6_1:-67082144 None:intergenic
AGGTTAGATAGAGGTAATGA+GGG 0.532271 6_1:+67083138 Msa0891520:three_prime_UTR
TCCGCCGCTTGATTTGATGC+CGG 0.534779 6_1:+67082844 Msa0891520:CDS
GGTATTACCGTCAACAGTAC+CGG 0.536641 6_1:-67082551 None:intergenic
TTCTGGGAATTGGTCCCATA+CGG 0.537481 6_1:-67083231 None:intergenic
GACGGTTGCAGTTCCTTCAC+CGG 0.537577 6_1:+67082532 Msa0891520:CDS
GCGGTGGCAAAACGGAGCTC+CGG 0.538825 6_1:+67082866 Msa0891520:CDS
CGTGCATCTCCGCGTGCACA+CGG 0.542038 6_1:-67083177 None:intergenic
GGCTTCTATGTGAGATTCAA+CGG 0.547067 6_1:+67082429 Msa0891520:CDS
CTCAAGGGTGGGTGTTGCAA+CGG 0.547090 6_1:-67082004 None:intergenic
AAGTAGAGAATCCGGTATGA+CGG 0.547644 6_1:+67082808 Msa0891520:CDS
CAAACAGACGGTGGTGCTCA+AGG 0.552332 6_1:+67082785 Msa0891520:CDS
GGGGTTCCAAACAATAAAAG+TGG 0.554485 6_1:-67082124 None:intergenic
ACAGACACAGACGGCGGTGA+AGG 0.555353 6_1:-67082473 None:intergenic
GATATCATCGAGTTCTTCAC+CGG 0.561771 6_1:+67082622 Msa0891520:CDS
TCAAATGAGTATTTCCGAAG+AGG 0.564250 6_1:+67082398 Msa0891520:CDS
GAATAGATCTCTGAGACTCA+AGG 0.566281 6_1:-67082020 None:intergenic
TCGACGAAAACGAGAGATTG+AGG 0.567733 6_1:+67082666 Msa0891520:CDS
AATAGATCTCTGAGACTCAA+GGG 0.568049 6_1:-67082019 None:intergenic
CGTGTGTCGTTTAACCGTAT+GGG 0.569154 6_1:+67083217 Msa0891520:three_prime_UTR
TTGGTGAGTTATTATTGTGG+TGG 0.572823 6_1:-67081908 None:intergenic
CTTCGGATTCATTTCCTCGC+CGG 0.573414 6_1:-67082885 None:intergenic
CTATCGACGAGGTTATTTCG+TGG 0.578836 6_1:+67082088 Msa0891520:CDS
GAAATCACCGGCATCGCCGT+TGG 0.579266 6_1:-67082572 None:intergenic
CTGTTGCGGCTATATCAACC+TGG 0.581211 6_1:+67082983 Msa0891520:CDS
TGATATCACCTGTTCTTCAC+CGG 0.582429 6_1:-67082606 None:intergenic
TTCACCGGCACGAGCACCAG+CGG 0.586382 6_1:+67082637 Msa0891520:CDS
AAAGAAAGGAAGGAACGAGA+AGG 0.586870 6_1:-67081823 None:intergenic
GAGTTTGACGGTGAAATCAC+CGG 0.589415 6_1:-67082584 None:intergenic
ACAGACGGCGGTGAAGGTGT+TGG 0.590096 6_1:-67082467 None:intergenic
GTGATTTCACCGTCAAACTC+CGG 0.593053 6_1:+67082587 Msa0891520:CDS
ACCGTCAACAGTACCGGTGA+AGG 0.597630 6_1:-67082545 None:intergenic
TCATGTTCTTGACAATCCAA+CGG 0.598951 6_1:-67083028 None:intergenic
TTAGAAAAGTAGTACCTGAC+CGG 0.612069 6_1:+67082366 Msa0891520:CDS
CAAATTACTAGCAAAGATGG+TGG 0.612678 6_1:-67082145 None:intergenic
ATACAACAAAGGTACATCTA+CGG 0.613163 6_1:-67083370 None:intergenic
ACCGCCGGCATCAAATCAAG+CGG 0.614650 6_1:-67082848 None:intergenic
AGTTTCTACCGCTGTAGTAG+CGG 0.615493 6_1:-67082501 None:intergenic
AATTACTAGCAAAGATGGTG+GGG 0.618873 6_1:-67082143 None:intergenic
AAGGGTGGGTGTTGCAACGG+TGG 0.622209 6_1:-67082001 None:intergenic
AACAATAACAGTCAAACAGA+CGG 0.625879 6_1:+67082773 Msa0891520:CDS
GCCGCTTGATTTGATGCCGG+CGG 0.632055 6_1:+67082847 Msa0891520:CDS
AAAAGTAGTACCTGACCGGT+GGG 0.635759 6_1:+67082370 Msa0891520:CDS
GATCTCTGAGACTCAAGGGT+GGG 0.636992 6_1:-67082015 None:intergenic
TGTTTCTGCCGCTACTACAG+CGG 0.640818 6_1:+67082493 Msa0891520:CDS
ACTCATTTGAAAATTCCCAC+CGG 0.642486 6_1:-67082385 None:intergenic
GGTGGTTCTAGAAGGTTCGG+TGG 0.645498 6_1:-67081890 None:intergenic
GCGGCAGAAACAGACACAGA+CGG 0.648280 6_1:-67082482 None:intergenic
AATCTGAGACCGTGTGCACG+CGG 0.650854 6_1:+67083168 Msa0891520:three_prime_UTR
GAAAAGTAGTACCTGACCGG+TGG 0.652133 6_1:+67082369 Msa0891520:CDS
AATTCTAAACAATACAACAA+AGG 0.657539 6_1:-67083381 None:intergenic
TAGAGAATCCGGTATGACGG+CGG 0.661957 6_1:+67082811 Msa0891520:CDS
GGCAAAACGGAGCTCCGGCG+AGG 0.665647 6_1:+67082871 Msa0891520:CDS
GAGAAGATGATACACTGTTG+CGG 0.665700 6_1:+67082969 Msa0891520:CDS
CGATAGATTTATCATCGACG+AGG 0.666770 6_1:-67082071 None:intergenic
ATTTCCGAAGAGGAGAAAAG+CGG 0.674735 6_1:+67082408 Msa0891520:CDS
CCAGCTCCGGTGGAAAACAA+CGG 0.683738 6_1:+67081964 Msa0891520:CDS
ACTGTTGACGGTAATACCAA+CGG 0.686195 6_1:+67082556 Msa0891520:CDS
AGATCTCTGAGACTCAAGGG+TGG 0.688159 6_1:-67082016 None:intergenic
TTTGTGTAAATGACACGTGG+TGG 0.696706 6_1:+67083099 Msa0891520:exon
GGTAGAAACTACAACAGCGA+CGG 0.697044 6_1:+67082514 Msa0891520:CDS
CGATGATAAATCTATCGACG+AGG 0.705066 6_1:+67082077 Msa0891520:CDS
GAATCCGAAGCTATTCGGTG+TGG 0.707189 6_1:+67082898 Msa0891520:CDS
ATGATAATGATCGAACAGCG+TGG 0.724654 6_1:+67083047 Msa0891520:CDS
TTCTATGTGAGATTCAACGG+AGG 0.744234 6_1:+67082432 Msa0891520:CDS
AATAACAGTCAAACAGACGG+TGG 0.748040 6_1:+67082776 Msa0891520:CDS
TATATTATGAGTGAGTGCAG+AGG 0.762443 6_1:+67083573 Msa0891520:three_prime_UTR
GCAGAAACAGACACAGACGG+CGG 0.769997 6_1:-67082479 None:intergenic
GAGTTTGTGTAAATGACACG+TGG 0.796727 6_1:+67083096 Msa0891520:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAAATACAAAGAAAA+GGG - chr6_1:67083302-67083321 None:intergenic 15.0%
!! AAATTGAAAATACAAAGAAA+AGG - chr6_1:67083303-67083322 None:intergenic 15.0%
!!! GTATTTTCAATTTTTTCTTT+TGG + chr6_1:67083310-67083329 Msa0891520:three_prime_UTR 15.0%
!!! AATTTTTTCTTTTGGTTTTT+TGG + chr6_1:67083318-67083337 Msa0891520:three_prime_UTR 15.0%
!!! ATTTTTTCTTTTGGTTTTTT+GGG + chr6_1:67083319-67083338 Msa0891520:three_prime_UTR 15.0%
!! AATTGAAAATACAAAGAAAA+GGG - chr6_1:67083302-67083321 None:intergenic 15.0%
!! AAATTGAAAATACAAAGAAA+AGG - chr6_1:67083303-67083322 None:intergenic 15.0%
!!! GTATTTTCAATTTTTTCTTT+TGG + chr6_1:67083310-67083329 Msa0891520:three_prime_UTR 15.0%
!!! AATTTTTTCTTTTGGTTTTT+TGG + chr6_1:67083318-67083337 Msa0891520:three_prime_UTR 15.0%
!!! ATTTTTTCTTTTGGTTTTTT+GGG + chr6_1:67083319-67083338 Msa0891520:three_prime_UTR 15.0%
!!! TTATATGTTTTTGTCAGAAA+CGG - chr6_1:67082051-67082070 None:intergenic 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr6_1:67082174-67082193 None:intergenic 20.0%
!!! TTTTGGATTAAAATTAGATG+TGG + chr6_1:67083346-67083365 Msa0891520:three_prime_UTR 20.0%
!! AATTCTAAACAATACAACAA+AGG - chr6_1:67083384-67083403 None:intergenic 20.0%
!!! CTTTTCTCTTTTTCATAAAA+AGG - chr6_1:67083502-67083521 None:intergenic 20.0%
!!! TTATATGTTTTTGTCAGAAA+CGG - chr6_1:67082051-67082070 None:intergenic 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr6_1:67082174-67082193 None:intergenic 20.0%
!!! TTTTGGATTAAAATTAGATG+TGG + chr6_1:67083346-67083365 Msa0891520:three_prime_UTR 20.0%
!! AATTCTAAACAATACAACAA+AGG - chr6_1:67083384-67083403 None:intergenic 20.0%
!!! CTTTTCTCTTTTTCATAAAA+AGG - chr6_1:67083502-67083521 None:intergenic 20.0%
!!! ATTTTGGTGAGTTATTATTG+TGG - chr6_1:67081914-67081933 None:intergenic 25.0%
!!! TGTTTTGTTGATTTTTTTGC+AGG + chr6_1:67082340-67082359 Msa0891520:intron 25.0%
!!! GTTTTGTTGATTTTTTTGCA+GGG + chr6_1:67082341-67082360 Msa0891520:intron 25.0%
!! GTGGATTTTTATTCAGATTT+AGG + chr6_1:67083118-67083137 Msa0891520:three_prime_UTR 25.0%
! CTTGATGTAAGATTAATGAT+AGG - chr6_1:67083415-67083434 None:intergenic 25.0%
!!! ATTTTGGTGAGTTATTATTG+TGG - chr6_1:67081914-67081933 None:intergenic 25.0%
!!! TGTTTTGTTGATTTTTTTGC+AGG + chr6_1:67082340-67082359 Msa0891520:intron 25.0%
!!! GTTTTGTTGATTTTTTTGCA+GGG + chr6_1:67082341-67082360 Msa0891520:intron 25.0%
!! GTGGATTTTTATTCAGATTT+AGG + chr6_1:67083118-67083137 Msa0891520:three_prime_UTR 25.0%
! CTTGATGTAAGATTAATGAT+AGG - chr6_1:67083415-67083434 None:intergenic 25.0%
GAAGAAAGAAAAAGAAAGGA+AGG - chr6_1:67081836-67081855 None:intergenic 30.0%
GAGAGAAGAAAGAAAAAGAA+AGG - chr6_1:67081840-67081859 None:intergenic 30.0%
! TGAAGAGAAAGAGAGAATTT+TGG - chr6_1:67081930-67081949 None:intergenic 30.0%
!! ATGGATCCACTTTTATTGTT+TGG + chr6_1:67082118-67082137 Msa0891520:CDS 30.0%
AAATTACTAGCAAAGATGGT+GGG - chr6_1:67082147-67082166 None:intergenic 30.0%
AAGCAAATTACTAGCAAAGA+TGG - chr6_1:67082151-67082170 None:intergenic 30.0%
AACAATAACAGTCAAACAGA+CGG + chr6_1:67082773-67082792 Msa0891520:CDS 30.0%
! TTCAGATTTAGGTTAGATAG+AGG + chr6_1:67083129-67083148 Msa0891520:three_prime_UTR 30.0%
AATTCCCAGAAGTTTCTTAT+GGG + chr6_1:67083243-67083262 Msa0891520:three_prime_UTR 30.0%
!!! TTGGTTTTTTGGGTACTTTT+TGG + chr6_1:67083329-67083348 Msa0891520:three_prime_UTR 30.0%
! ATACAACAAAGGTACATCTA+CGG - chr6_1:67083373-67083392 None:intergenic 30.0%
GAAGAAAGAAAAAGAAAGGA+AGG - chr6_1:67081836-67081855 None:intergenic 30.0%
GAGAGAAGAAAGAAAAAGAA+AGG - chr6_1:67081840-67081859 None:intergenic 30.0%
! TGAAGAGAAAGAGAGAATTT+TGG - chr6_1:67081930-67081949 None:intergenic 30.0%
!! ATGGATCCACTTTTATTGTT+TGG + chr6_1:67082118-67082137 Msa0891520:CDS 30.0%
AAATTACTAGCAAAGATGGT+GGG - chr6_1:67082147-67082166 None:intergenic 30.0%
AAGCAAATTACTAGCAAAGA+TGG - chr6_1:67082151-67082170 None:intergenic 30.0%
AACAATAACAGTCAAACAGA+CGG + chr6_1:67082773-67082792 Msa0891520:CDS 30.0%
! TTCAGATTTAGGTTAGATAG+AGG + chr6_1:67083129-67083148 Msa0891520:three_prime_UTR 30.0%
AATTCCCAGAAGTTTCTTAT+GGG + chr6_1:67083243-67083262 Msa0891520:three_prime_UTR 30.0%
!!! TTGGTTTTTTGGGTACTTTT+TGG + chr6_1:67083329-67083348 Msa0891520:three_prime_UTR 30.0%
! ATACAACAAAGGTACATCTA+CGG - chr6_1:67083373-67083392 None:intergenic 30.0%
!! ATTATTGTGGTGGTTCTAGA+AGG - chr6_1:67081901-67081920 None:intergenic 35.0%
TTGGTGAGTTATTATTGTGG+TGG - chr6_1:67081911-67081930 None:intergenic 35.0%
TTCTCTCTTTCTCTTCATCA+TGG + chr6_1:67081933-67081952 Msa0891520:exon 35.0%
!! AATAGATCTCTGAGACTCAA+GGG - chr6_1:67082022-67082041 None:intergenic 35.0%
AATTACTAGCAAAGATGGTG+GGG - chr6_1:67082146-67082165 None:intergenic 35.0%
CAAATTACTAGCAAAGATGG+TGG - chr6_1:67082148-67082167 None:intergenic 35.0%
TTTGACGAATTGAAGCGATA+AGG + chr6_1:67082303-67082322 Msa0891520:intron 35.0%
TTGACGAATTGAAGCGATAA+GGG + chr6_1:67082304-67082323 Msa0891520:intron 35.0%
TTAGAAAAGTAGTACCTGAC+CGG + chr6_1:67082366-67082385 Msa0891520:CDS 35.0%
ACTCATTTGAAAATTCCCAC+CGG - chr6_1:67082388-67082407 None:intergenic 35.0%
TCAAATGAGTATTTCCGAAG+AGG + chr6_1:67082398-67082417 Msa0891520:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG + chr6_1:67082893-67082912 Msa0891520:CDS 35.0%
GCAAAACGAGTTAGAGAAAA+CGG + chr6_1:67082929-67082948 Msa0891520:CDS 35.0%
AGAGAAAACGGTTGTGAAAA+TGG + chr6_1:67082941-67082960 Msa0891520:CDS 35.0%
TCATGTTCTTGACAATCCAA+CGG - chr6_1:67083031-67083050 None:intergenic 35.0%
TAGGTTAGATAGAGGTAATG+AGG + chr6_1:67083137-67083156 Msa0891520:three_prime_UTR 35.0%
AGGTTAGATAGAGGTAATGA+GGG + chr6_1:67083138-67083157 Msa0891520:three_prime_UTR 35.0%
! CATAAGAAACTTCTGGGAAT+TGG - chr6_1:67083244-67083263 None:intergenic 35.0%
CAATTCCCAGAAGTTTCTTA+TGG + chr6_1:67083242-67083261 Msa0891520:three_prime_UTR 35.0%
ACTTCCCATAAGAAACTTCT+GGG - chr6_1:67083250-67083269 None:intergenic 35.0%
AACTTCCCATAAGAAACTTC+TGG - chr6_1:67083251-67083270 None:intergenic 35.0%
TATATTATGAGTGAGTGCAG+AGG + chr6_1:67083573-67083592 Msa0891520:three_prime_UTR 35.0%
!! ATTATTGTGGTGGTTCTAGA+AGG - chr6_1:67081901-67081920 None:intergenic 35.0%
TTGGTGAGTTATTATTGTGG+TGG - chr6_1:67081911-67081930 None:intergenic 35.0%
TTCTCTCTTTCTCTTCATCA+TGG + chr6_1:67081933-67081952 Msa0891520:exon 35.0%
!! AATAGATCTCTGAGACTCAA+GGG - chr6_1:67082022-67082041 None:intergenic 35.0%
AATTACTAGCAAAGATGGTG+GGG - chr6_1:67082146-67082165 None:intergenic 35.0%
CAAATTACTAGCAAAGATGG+TGG - chr6_1:67082148-67082167 None:intergenic 35.0%
TTTGACGAATTGAAGCGATA+AGG + chr6_1:67082303-67082322 Msa0891520:intron 35.0%
TTGACGAATTGAAGCGATAA+GGG + chr6_1:67082304-67082323 Msa0891520:intron 35.0%
TTAGAAAAGTAGTACCTGAC+CGG + chr6_1:67082366-67082385 Msa0891520:CDS 35.0%
ACTCATTTGAAAATTCCCAC+CGG - chr6_1:67082388-67082407 None:intergenic 35.0%
TCAAATGAGTATTTCCGAAG+AGG + chr6_1:67082398-67082417 Msa0891520:CDS 35.0%
GAAATGAATCCGAAGCTATT+CGG + chr6_1:67082893-67082912 Msa0891520:CDS 35.0%
GCAAAACGAGTTAGAGAAAA+CGG + chr6_1:67082929-67082948 Msa0891520:CDS 35.0%
AGAGAAAACGGTTGTGAAAA+TGG + chr6_1:67082941-67082960 Msa0891520:CDS 35.0%
TCATGTTCTTGACAATCCAA+CGG - chr6_1:67083031-67083050 None:intergenic 35.0%
TAGGTTAGATAGAGGTAATG+AGG + chr6_1:67083137-67083156 Msa0891520:three_prime_UTR 35.0%
AGGTTAGATAGAGGTAATGA+GGG + chr6_1:67083138-67083157 Msa0891520:three_prime_UTR 35.0%
! CATAAGAAACTTCTGGGAAT+TGG - chr6_1:67083244-67083263 None:intergenic 35.0%
CAATTCCCAGAAGTTTCTTA+TGG + chr6_1:67083242-67083261 Msa0891520:three_prime_UTR 35.0%
ACTTCCCATAAGAAACTTCT+GGG - chr6_1:67083250-67083269 None:intergenic 35.0%
AACTTCCCATAAGAAACTTC+TGG - chr6_1:67083251-67083270 None:intergenic 35.0%
TATATTATGAGTGAGTGCAG+AGG + chr6_1:67083573-67083592 Msa0891520:three_prime_UTR 35.0%
!! CGAGAAGGTACTAGTTAGTT+AGG - chr6_1:67081811-67081830 None:intergenic 40.0%
AAAGAAAGGAAGGAACGAGA+AGG - chr6_1:67081826-67081845 None:intergenic 40.0%
!! AGGTTCGGTGGAGAATAAAA+AGG - chr6_1:67081881-67081900 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG - chr6_1:67082023-67082042 None:intergenic 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG - chr6_1:67082045-67082064 None:intergenic 40.0%
CGATAGATTTATCATCGACG+AGG - chr6_1:67082074-67082093 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG + chr6_1:67082077-67082096 Msa0891520:CDS 40.0%
! GTTATTTCGTGGAACGAAGA+TGG + chr6_1:67082099-67082118 Msa0891520:CDS 40.0%
GGGGTTCCAAACAATAAAAG+TGG - chr6_1:67082127-67082146 None:intergenic 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG - chr6_1:67082202-67082221 None:intergenic 40.0%
ATTTCCGAAGAGGAGAAAAG+CGG + chr6_1:67082408-67082427 Msa0891520:CDS 40.0%
GGCTTCTATGTGAGATTCAA+CGG + chr6_1:67082429-67082448 Msa0891520:CDS 40.0%
TTCTATGTGAGATTCAACGG+AGG + chr6_1:67082432-67082451 Msa0891520:CDS 40.0%
ACTGTTGACGGTAATACCAA+CGG + chr6_1:67082556-67082575 Msa0891520:CDS 40.0%
TGATATCACCTGTTCTTCAC+CGG - chr6_1:67082609-67082628 None:intergenic 40.0%
GATATCATCGAGTTCTTCAC+CGG + chr6_1:67082622-67082641 Msa0891520:CDS 40.0%
AATAACAGTCAAACAGACGG+TGG + chr6_1:67082776-67082795 Msa0891520:CDS 40.0%
AAGTAGAGAATCCGGTATGA+CGG + chr6_1:67082808-67082827 Msa0891520:CDS 40.0%
GAGAAGATGATACACTGTTG+CGG + chr6_1:67082969-67082988 Msa0891520:CDS 40.0%
!! GCTATATCAACCTGGTTCTA+CGG + chr6_1:67082991-67083010 Msa0891520:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG + chr6_1:67083047-67083066 Msa0891520:CDS 40.0%
GAGTTTGTGTAAATGACACG+TGG + chr6_1:67083096-67083115 Msa0891520:exon 40.0%
TTTGTGTAAATGACACGTGG+TGG + chr6_1:67083099-67083118 Msa0891520:exon 40.0%
! ATAGAGGTAATGAGGGTGTA+GGG + chr6_1:67083145-67083164 Msa0891520:three_prime_UTR 40.0%
!! CGAGAAGGTACTAGTTAGTT+AGG - chr6_1:67081811-67081830 None:intergenic 40.0%
AAAGAAAGGAAGGAACGAGA+AGG - chr6_1:67081826-67081845 None:intergenic 40.0%
!! AGGTTCGGTGGAGAATAAAA+AGG - chr6_1:67081881-67081900 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG - chr6_1:67082023-67082042 None:intergenic 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG - chr6_1:67082045-67082064 None:intergenic 40.0%
CGATAGATTTATCATCGACG+AGG - chr6_1:67082074-67082093 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG + chr6_1:67082077-67082096 Msa0891520:CDS 40.0%
! GTTATTTCGTGGAACGAAGA+TGG + chr6_1:67082099-67082118 Msa0891520:CDS 40.0%
GGGGTTCCAAACAATAAAAG+TGG - chr6_1:67082127-67082146 None:intergenic 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG - chr6_1:67082202-67082221 None:intergenic 40.0%
ATTTCCGAAGAGGAGAAAAG+CGG + chr6_1:67082408-67082427 Msa0891520:CDS 40.0%
GGCTTCTATGTGAGATTCAA+CGG + chr6_1:67082429-67082448 Msa0891520:CDS 40.0%
TTCTATGTGAGATTCAACGG+AGG + chr6_1:67082432-67082451 Msa0891520:CDS 40.0%
ACTGTTGACGGTAATACCAA+CGG + chr6_1:67082556-67082575 Msa0891520:CDS 40.0%
TGATATCACCTGTTCTTCAC+CGG - chr6_1:67082609-67082628 None:intergenic 40.0%
GATATCATCGAGTTCTTCAC+CGG + chr6_1:67082622-67082641 Msa0891520:CDS 40.0%
AATAACAGTCAAACAGACGG+TGG + chr6_1:67082776-67082795 Msa0891520:CDS 40.0%
AAGTAGAGAATCCGGTATGA+CGG + chr6_1:67082808-67082827 Msa0891520:CDS 40.0%
GAGAAGATGATACACTGTTG+CGG + chr6_1:67082969-67082988 Msa0891520:CDS 40.0%
!! GCTATATCAACCTGGTTCTA+CGG + chr6_1:67082991-67083010 Msa0891520:CDS 40.0%
! ATGATAATGATCGAACAGCG+TGG + chr6_1:67083047-67083066 Msa0891520:CDS 40.0%
GAGTTTGTGTAAATGACACG+TGG + chr6_1:67083096-67083115 Msa0891520:exon 40.0%
TTTGTGTAAATGACACGTGG+TGG + chr6_1:67083099-67083118 Msa0891520:exon 40.0%
! ATAGAGGTAATGAGGGTGTA+GGG + chr6_1:67083145-67083164 Msa0891520:three_prime_UTR 40.0%
!! TGTGGTGGTTCTAGAAGGTT+CGG - chr6_1:67081896-67081915 None:intergenic 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG - chr6_1:67081973-67081992 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG + chr6_1:67082088-67082107 Msa0891520:CDS 45.0%
AAAAGTAGTACCTGACCGGT+GGG + chr6_1:67082370-67082389 Msa0891520:CDS 45.0%
TTTGAAAATTCCCACCGGTC+AGG - chr6_1:67082383-67082402 None:intergenic 45.0%
AGTTTCTACCGCTGTAGTAG+CGG - chr6_1:67082504-67082523 None:intergenic 45.0%
GGTAGAAACTACAACAGCGA+CGG + chr6_1:67082514-67082533 Msa0891520:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG - chr6_1:67082554-67082573 None:intergenic 45.0%
GAGTTTGACGGTGAAATCAC+CGG - chr6_1:67082587-67082606 None:intergenic 45.0%
GTGATTTCACCGTCAAACTC+CGG + chr6_1:67082587-67082606 Msa0891520:CDS 45.0%
TGTTCTTCACCGGAGTTTGA+CGG - chr6_1:67082599-67082618 None:intergenic 45.0%
TCGACGAAAACGAGAGATTG+AGG + chr6_1:67082666-67082685 Msa0891520:CDS 45.0%
GCTCAAGGAAGTAGAGAATC+CGG + chr6_1:67082800-67082819 Msa0891520:CDS 45.0%
! ATCAAATCAAGCGGCGGATT+CGG - chr6_1:67082842-67082861 None:intergenic 45.0%
! GATAGAGGTAATGAGGGTGT+AGG + chr6_1:67083144-67083163 Msa0891520:three_prime_UTR 45.0%
!! ACGTGTGTCGTTTAACCGTA+TGG + chr6_1:67083216-67083235 Msa0891520:three_prime_UTR 45.0%
!! CGTGTGTCGTTTAACCGTAT+GGG + chr6_1:67083217-67083236 Msa0891520:three_prime_UTR 45.0%
! TTCTGGGAATTGGTCCCATA+CGG - chr6_1:67083234-67083253 None:intergenic 45.0%
!! TGTGGTGGTTCTAGAAGGTT+CGG - chr6_1:67081896-67081915 None:intergenic 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG - chr6_1:67081973-67081992 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG + chr6_1:67082088-67082107 Msa0891520:CDS 45.0%
AAAAGTAGTACCTGACCGGT+GGG + chr6_1:67082370-67082389 Msa0891520:CDS 45.0%
TTTGAAAATTCCCACCGGTC+AGG - chr6_1:67082383-67082402 None:intergenic 45.0%
AGTTTCTACCGCTGTAGTAG+CGG - chr6_1:67082504-67082523 None:intergenic 45.0%
GGTAGAAACTACAACAGCGA+CGG + chr6_1:67082514-67082533 Msa0891520:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG - chr6_1:67082554-67082573 None:intergenic 45.0%
GAGTTTGACGGTGAAATCAC+CGG - chr6_1:67082587-67082606 None:intergenic 45.0%
GTGATTTCACCGTCAAACTC+CGG + chr6_1:67082587-67082606 Msa0891520:CDS 45.0%
TGTTCTTCACCGGAGTTTGA+CGG - chr6_1:67082599-67082618 None:intergenic 45.0%
TCGACGAAAACGAGAGATTG+AGG + chr6_1:67082666-67082685 Msa0891520:CDS 45.0%
GCTCAAGGAAGTAGAGAATC+CGG + chr6_1:67082800-67082819 Msa0891520:CDS 45.0%
! ATCAAATCAAGCGGCGGATT+CGG - chr6_1:67082842-67082861 None:intergenic 45.0%
! GATAGAGGTAATGAGGGTGT+AGG + chr6_1:67083144-67083163 Msa0891520:three_prime_UTR 45.0%
!! ACGTGTGTCGTTTAACCGTA+TGG + chr6_1:67083216-67083235 Msa0891520:three_prime_UTR 45.0%
!! CGTGTGTCGTTTAACCGTAT+GGG + chr6_1:67083217-67083236 Msa0891520:three_prime_UTR 45.0%
! TTCTGGGAATTGGTCCCATA+CGG - chr6_1:67083234-67083253 None:intergenic 45.0%
!! AAAGAAAATAATATAATAAT+AGG - chr6_1:67082249-67082268 None:intergenic 5.0%
!! AAAGAAAATAATATAATAAT+AGG - chr6_1:67082249-67082268 None:intergenic 5.0%
!! GATCTCTGAGACTCAAGGGT+GGG - chr6_1:67082018-67082037 None:intergenic 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG - chr6_1:67082019-67082038 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG + chr6_1:67082369-67082388 Msa0891520:CDS 50.0%
!!! GAAGCCGCTTTTCTCCTCTT+CGG - chr6_1:67082415-67082434 None:intergenic 50.0%
! TGTTTCTGCCGCTACTACAG+CGG + chr6_1:67082493-67082512 Msa0891520:CDS 50.0%
TCCTTCACCGGTACTGTTGA+CGG + chr6_1:67082544-67082563 Msa0891520:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG + chr6_1:67082598-67082617 Msa0891520:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG + chr6_1:67082811-67082830 Msa0891520:CDS 50.0%
CTTCGGATTCATTTCCTCGC+CGG - chr6_1:67082888-67082907 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG + chr6_1:67082898-67082917 Msa0891520:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG - chr6_1:67082905-67082924 None:intergenic 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG + chr6_1:67082905-67082924 Msa0891520:CDS 50.0%
CTGTTGCGGCTATATCAACC+TGG + chr6_1:67082983-67083002 Msa0891520:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG - chr6_1:67083004-67083023 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG + chr6_1:67083012-67083031 Msa0891520:CDS 50.0%
!! GATCTCTGAGACTCAAGGGT+GGG - chr6_1:67082018-67082037 None:intergenic 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG - chr6_1:67082019-67082038 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG + chr6_1:67082369-67082388 Msa0891520:CDS 50.0%
!!! GAAGCCGCTTTTCTCCTCTT+CGG - chr6_1:67082415-67082434 None:intergenic 50.0%
! TGTTTCTGCCGCTACTACAG+CGG + chr6_1:67082493-67082512 Msa0891520:CDS 50.0%
TCCTTCACCGGTACTGTTGA+CGG + chr6_1:67082544-67082563 Msa0891520:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG + chr6_1:67082598-67082617 Msa0891520:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG + chr6_1:67082811-67082830 Msa0891520:CDS 50.0%
CTTCGGATTCATTTCCTCGC+CGG - chr6_1:67082888-67082907 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG + chr6_1:67082898-67082917 Msa0891520:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG - chr6_1:67082905-67082924 None:intergenic 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG + chr6_1:67082905-67082924 Msa0891520:CDS 50.0%
CTGTTGCGGCTATATCAACC+TGG + chr6_1:67082983-67083002 Msa0891520:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG - chr6_1:67083004-67083023 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG + chr6_1:67083012-67083031 Msa0891520:CDS 50.0%
!! GGTGGTTCTAGAAGGTTCGG+TGG - chr6_1:67081893-67081912 None:intergenic 55.0%
CCAGCTCCGGTGGAAAACAA+CGG + chr6_1:67081964-67081983 Msa0891520:CDS 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG - chr6_1:67082007-67082026 None:intergenic 55.0%
GCAGAAACAGACACAGACGG+CGG - chr6_1:67082482-67082501 None:intergenic 55.0%
GCGGCAGAAACAGACACAGA+CGG - chr6_1:67082485-67082504 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG + chr6_1:67082532-67082551 Msa0891520:CDS 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG - chr6_1:67082548-67082567 None:intergenic 55.0%
GGTAATACCAACGGCGATGC+CGG + chr6_1:67082565-67082584 Msa0891520:CDS 55.0%
! TTTTCGTCGAGAAGCTCCGC+TGG - chr6_1:67082656-67082675 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG + chr6_1:67082785-67082804 Msa0891520:CDS 55.0%
! TCCGCCGCTTGATTTGATGC+CGG + chr6_1:67082844-67082863 Msa0891520:CDS 55.0%
ACCGCCGGCATCAAATCAAG+CGG - chr6_1:67082851-67082870 None:intergenic 55.0%
! AATCTGAGACCGTGTGCACG+CGG + chr6_1:67083168-67083187 Msa0891520:three_prime_UTR 55.0%
!! GGTGGTTCTAGAAGGTTCGG+TGG - chr6_1:67081893-67081912 None:intergenic 55.0%
CCAGCTCCGGTGGAAAACAA+CGG + chr6_1:67081964-67081983 Msa0891520:CDS 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG - chr6_1:67082007-67082026 None:intergenic 55.0%
GCAGAAACAGACACAGACGG+CGG - chr6_1:67082482-67082501 None:intergenic 55.0%
GCGGCAGAAACAGACACAGA+CGG - chr6_1:67082485-67082504 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG + chr6_1:67082532-67082551 Msa0891520:CDS 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG - chr6_1:67082548-67082567 None:intergenic 55.0%
GGTAATACCAACGGCGATGC+CGG + chr6_1:67082565-67082584 Msa0891520:CDS 55.0%
! TTTTCGTCGAGAAGCTCCGC+TGG - chr6_1:67082656-67082675 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG + chr6_1:67082785-67082804 Msa0891520:CDS 55.0%
! TCCGCCGCTTGATTTGATGC+CGG + chr6_1:67082844-67082863 Msa0891520:CDS 55.0%
ACCGCCGGCATCAAATCAAG+CGG - chr6_1:67082851-67082870 None:intergenic 55.0%
! AATCTGAGACCGTGTGCACG+CGG + chr6_1:67083168-67083187 Msa0891520:three_prime_UTR 55.0%
! TTTTCCACCGGAGCTGGCGA+AGG - chr6_1:67081961-67081980 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG - chr6_1:67081967-67081986 None:intergenic 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG - chr6_1:67081998-67082017 None:intergenic 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG - chr6_1:67082004-67082023 None:intergenic 60.0%
! ACAGACGGCGGTGAAGGTGT+TGG - chr6_1:67082470-67082489 None:intergenic 60.0%
ACAGACACAGACGGCGGTGA+AGG - chr6_1:67082476-67082495 None:intergenic 60.0%
GAAATCACCGGCATCGCCGT+TGG - chr6_1:67082575-67082594 None:intergenic 60.0%
CGGATTCACCGCCGTCATAC+CGG - chr6_1:67082822-67082841 None:intergenic 60.0%
GCCGGCATCAAATCAAGCGG+CGG - chr6_1:67082848-67082867 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG + chr6_1:67082847-67082866 Msa0891520:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG + chr6_1:67082850-67082869 Msa0891520:CDS 60.0%
TGATGCCGGCGGTGGCAAAA+CGG + chr6_1:67082858-67082877 Msa0891520:CDS 60.0%
! TTTTCCACCGGAGCTGGCGA+AGG - chr6_1:67081961-67081980 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG - chr6_1:67081967-67081986 None:intergenic 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG - chr6_1:67081998-67082017 None:intergenic 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG - chr6_1:67082004-67082023 None:intergenic 60.0%
! ACAGACGGCGGTGAAGGTGT+TGG - chr6_1:67082470-67082489 None:intergenic 60.0%
ACAGACACAGACGGCGGTGA+AGG - chr6_1:67082476-67082495 None:intergenic 60.0%
GAAATCACCGGCATCGCCGT+TGG - chr6_1:67082575-67082594 None:intergenic 60.0%
CGGATTCACCGCCGTCATAC+CGG - chr6_1:67082822-67082841 None:intergenic 60.0%
GCCGGCATCAAATCAAGCGG+CGG - chr6_1:67082848-67082867 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG + chr6_1:67082847-67082866 Msa0891520:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG + chr6_1:67082850-67082869 Msa0891520:CDS 60.0%
TGATGCCGGCGGTGGCAAAA+CGG + chr6_1:67082858-67082877 Msa0891520:CDS 60.0%
CATGGCTCCTTCGCCAGCTC+CGG + chr6_1:67081951-67081970 Msa0891520:exon 65.0%
TTCACCGGCACGAGCACCAG+CGG + chr6_1:67082637-67082656 Msa0891520:CDS 65.0%
! GAGCTCCGTTTTGCCACCGC+CGG - chr6_1:67082866-67082885 None:intergenic 65.0%
GCGGTGGCAAAACGGAGCTC+CGG + chr6_1:67082866-67082885 Msa0891520:CDS 65.0%
CGTGCATCTCCGCGTGCACA+CGG - chr6_1:67083180-67083199 None:intergenic 65.0%
CATGGCTCCTTCGCCAGCTC+CGG + chr6_1:67081951-67081970 Msa0891520:exon 65.0%
TTCACCGGCACGAGCACCAG+CGG + chr6_1:67082637-67082656 Msa0891520:CDS 65.0%
! GAGCTCCGTTTTGCCACCGC+CGG - chr6_1:67082866-67082885 None:intergenic 65.0%
GCGGTGGCAAAACGGAGCTC+CGG + chr6_1:67082866-67082885 Msa0891520:CDS 65.0%
CGTGCATCTCCGCGTGCACA+CGG - chr6_1:67083180-67083199 None:intergenic 65.0%
AGCTCCGCTGGTGCTCGTGC+CGG - chr6_1:67082644-67082663 None:intergenic 70.0%
GGCAAAACGGAGCTCCGGCG+AGG + chr6_1:67082871-67082890 Msa0891520:CDS 70.0%
AGCTCCGCTGGTGCTCGTGC+CGG - chr6_1:67082644-67082663 None:intergenic 70.0%
GGCAAAACGGAGCTCCGGCG+AGG + chr6_1:67082871-67082890 Msa0891520:CDS 70.0%
GGCTCCTTCGCCAGCTCCGG+TGG + chr6_1:67081954-67081973 Msa0891520:CDS 75.0%
GGCTCCTTCGCCAGCTCCGG+TGG + chr6_1:67081954-67081973 Msa0891520:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 67081797 67083609 67081797 ID=Msa0891520;Name=Msa0891520
chr6_1 mRNA 67081797 67083609 67081797 ID=Msa0891520-mRNA-1;Parent=Msa0891520;Name=Msa0891520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|1|1|2|498|341
chr6_1 exon 67081797 67082227 67081797 ID=Msa0891520-mRNA-1:exon:11942;Parent=Msa0891520-mRNA-1
chr6_1 exon 67082362 67083609 67082362 ID=Msa0891520-mRNA-1:exon:11943;Parent=Msa0891520-mRNA-1
chr6_1 five_prime_UTR 67081797 67081951 67081797 ID=Msa0891520-mRNA-1:five_prime_utr;Parent=Msa0891520-mRNA-1
chr6_1 CDS 67081952 67082227 67081952 ID=Msa0891520-mRNA-1:cds;Parent=Msa0891520-mRNA-1
chr6_1 CDS 67082362 67083111 67082362 ID=Msa0891520-mRNA-1:cds;Parent=Msa0891520-mRNA-1
chr6_1 three_prime_UTR 67083112 67083609 67083112 ID=Msa0891520-mRNA-1:three_prime_utr;Parent=Msa0891520-mRNA-1
Gene Sequence

>Msa0891520

ATGGCTCCTTCGCCAGCTCCGGTGGAAAACAACGGAGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCGTTTCTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACTTTTATTGTTTGGAACCCCACCATCTTTGCTAGTAATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTCCGAAGAGGAGAAAAGCGGCTTCTATGTGAGATTCAACGGAGGAAGATCTGTTCTCCAACACCTTCACCGCCGTCTGTGTCTGTTTCTGCCGCTACTACAGCGGTAGAAACTACAACAGCGACGGTTGCAGTTCCTTCACCGGTACTGTTGACGGTAATACCAACGGCGATGCCGGTGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCATCGAGTTCTTCACCGGCACGAGCACCAGCGGAGCTTCTCGACGAAAACGAGAGATTGAGGAAAGAGAACAATTTATTGAATAAAGAGCTTGCTGAGATGAGATTGCTTTGTAACAATATATACTCTCTAATGTCAAATTTTGCAAACAATAACAGTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCGAATCCGCCGCTTGATTTGATGCCGGCGGTGGCAAAACGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTTAGAGAAAACGGTTGTGAAAATGGTGAAAGAGAAGATGATACACTGTTGCGGCTATATCAACCTGGTTCTACGGACGTGAAATCTGAACCGTTGGATTGTCAAGAACATGATAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAGTTTGTGTAAATGA
Protein sequence

>Msa0891520

MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTIFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPPSVSVSAATTAVETTTATVAVPSPVLLTVIPTAMPVISPSNSGEEQVISSSSSPARAPAELLDENERLRKENNLLNKELAEMRLLCNNIYSLMSNFANNNSQTDGGAQGSRESGMTAVNPNPPLDLMPAVAKRSSGEEMNPKLFGVAIGAKRVRENGCENGEREDDTLLRLYQPGSTDVKSEPLDCQEHDNDRTAWLNQSRRKNQSLCK*