Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892010 | ACJ85725.1 | 84.076 | 157 | 21 | 2 | 1 | 154 | 1 | 156 | 4.90e-85 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892010 | sp|Q9CAI5|CKL2_ARATH | 77.707 | 157 | 31 | 2 | 1 | 154 | 1 | 156 | 9.40e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892010 | B7FLU2 | 84.076 | 157 | 21 | 2 | 1 | 154 | 1 | 156 | 2.34e-85 | 267 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892010 | MtrunA17_Chr8g0342821 | 84.713 | 157 | 20 | 2 | 1 | 154 | 1 | 156 | 1.09e-88 | 266 |
| Msa0892010 | MtrunA17_Chr2g0329981 | 80.892 | 157 | 26 | 2 | 1 | 154 | 1 | 156 | 1.96e-85 | 258 |
| Msa0892010 | MtrunA17_Chr4g0071031 | 79.618 | 157 | 28 | 2 | 1 | 154 | 1 | 156 | 5.03e-84 | 253 |
| Msa0892010 | MtrunA17_Chr2g0299661 | 72.436 | 156 | 41 | 1 | 1 | 154 | 1 | 156 | 2.39e-76 | 234 |
| Msa0892010 | MtrunA17_Chr1g0166821 | 67.763 | 152 | 47 | 1 | 5 | 154 | 6 | 157 | 3.93e-72 | 223 |
| Msa0892010 | MtrunA17_Chr1g0183631 | 66.026 | 156 | 51 | 1 | 1 | 154 | 1 | 156 | 1.73e-71 | 221 |
| Msa0892010 | MtrunA17_Chr7g0261501 | 64.103 | 156 | 54 | 1 | 1 | 154 | 1 | 156 | 3.59e-70 | 218 |
| Msa0892010 | MtrunA17_Chr1g0187571 | 65.385 | 156 | 52 | 1 | 1 | 154 | 2 | 157 | 1.43e-69 | 217 |
| Msa0892010 | MtrunA17_Chr6g0486611 | 62.658 | 158 | 53 | 2 | 1 | 154 | 1 | 156 | 1.49e-64 | 202 |
| Msa0892010 | MtrunA17_Chr1g0167261 | 58.861 | 158 | 59 | 2 | 1 | 154 | 2 | 157 | 6.52e-63 | 196 |
| Msa0892010 | MtrunA17_Chr8g0390211 | 61.146 | 157 | 57 | 2 | 1 | 154 | 1 | 156 | 5.50e-61 | 193 |
| Msa0892010 | MtrunA17_Chr3g0140071 | 56.962 | 158 | 62 | 2 | 1 | 154 | 1 | 156 | 4.07e-59 | 189 |
| Msa0892010 | MtrunA17_Chr1g0146151 | 55.414 | 157 | 66 | 2 | 1 | 154 | 1 | 156 | 3.95e-56 | 181 |
| Msa0892010 | MtrunA17_Chr1g0213321 | 32.051 | 156 | 96 | 3 | 9 | 154 | 119 | 274 | 4.30e-23 | 94.4 |
| Msa0892010 | MtrunA17_Chr7g0253211 | 32.934 | 167 | 96 | 4 | 4 | 154 | 317 | 483 | 1.06e-22 | 93.2 |
| Msa0892010 | MtrunA17_Chr7g0214531 | 30.435 | 161 | 97 | 3 | 9 | 154 | 37 | 197 | 2.03e-22 | 92.4 |
| Msa0892010 | MtrunA17_Chr3g0140431 | 31.613 | 155 | 97 | 3 | 9 | 154 | 38 | 192 | 1.24e-21 | 90.1 |
| Msa0892010 | MtrunA17_Chr1g0146301 | 30.323 | 155 | 99 | 3 | 9 | 154 | 124 | 278 | 2.92e-21 | 89.0 |
| Msa0892010 | MtrunA17_Chr8g0340491 | 29.091 | 165 | 95 | 5 | 9 | 154 | 128 | 289 | 2.63e-18 | 80.5 |
| Msa0892010 | MtrunA17_Chr4g0059951 | 30.769 | 156 | 99 | 3 | 4 | 151 | 68 | 222 | 2.60e-12 | 63.5 |
| Msa0892010 | MtrunA17_Chr3g0107011 | 28.931 | 159 | 100 | 5 | 1 | 151 | 5 | 158 | 3.15e-12 | 63.2 |
| Msa0892010 | MtrunA17_Chr4g0072831 | 27.815 | 151 | 91 | 4 | 1 | 151 | 2 | 134 | 1.18e-11 | 61.2 |
| Msa0892010 | MtrunA17_Chr8g0358921 | 30.323 | 155 | 89 | 7 | 14 | 154 | 52 | 201 | 2.46e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892010 | AT1G72710.1 | 77.707 | 157 | 31 | 2 | 1 | 154 | 1 | 156 | 9.55e-83 | 251 |
| Msa0892010 | AT4G26100.1 | 77.070 | 157 | 32 | 2 | 1 | 154 | 1 | 156 | 1.10e-81 | 248 |
| Msa0892010 | AT2G19470.1 | 74.359 | 156 | 38 | 1 | 1 | 154 | 1 | 156 | 1.52e-80 | 244 |
| Msa0892010 | AT5G57015.1 | 75.159 | 157 | 35 | 2 | 1 | 154 | 1 | 156 | 2.17e-80 | 244 |
| Msa0892010 | AT1G03930.1 | 68.590 | 156 | 47 | 1 | 1 | 154 | 1 | 156 | 3.25e-75 | 232 |
| Msa0892010 | AT5G44100.1 | 67.105 | 152 | 48 | 1 | 5 | 154 | 5 | 156 | 3.84e-71 | 221 |
| Msa0892010 | AT5G44100.2 | 67.105 | 152 | 48 | 1 | 5 | 154 | 5 | 156 | 3.84e-71 | 221 |
| Msa0892010 | AT5G43320.1 | 62.179 | 156 | 57 | 1 | 1 | 154 | 1 | 156 | 3.50e-69 | 216 |
| Msa0892010 | AT3G23340.1 | 62.821 | 156 | 56 | 1 | 1 | 154 | 1 | 156 | 3.37e-68 | 213 |
| Msa0892010 | AT5G43320.2 | 62.179 | 156 | 57 | 1 | 1 | 154 | 1 | 156 | 5.32e-68 | 210 |
| Msa0892010 | AT5G43320.3 | 62.179 | 156 | 57 | 1 | 1 | 154 | 1 | 156 | 5.32e-68 | 210 |
| Msa0892010 | AT4G14340.2 | 63.462 | 156 | 55 | 1 | 1 | 154 | 7 | 162 | 1.12e-67 | 209 |
| Msa0892010 | AT4G28540.1 | 61.538 | 156 | 58 | 1 | 1 | 154 | 5 | 160 | 3.67e-67 | 211 |
| Msa0892010 | AT4G14340.1 | 63.462 | 156 | 55 | 1 | 1 | 154 | 7 | 162 | 3.79e-67 | 211 |
| Msa0892010 | AT1G04440.1 | 62.821 | 156 | 56 | 1 | 1 | 154 | 1 | 156 | 4.14e-67 | 211 |
| Msa0892010 | AT4G28860.2 | 60.256 | 156 | 60 | 1 | 1 | 154 | 1 | 156 | 8.39e-61 | 192 |
| Msa0892010 | AT4G28860.1 | 60.256 | 156 | 60 | 1 | 1 | 154 | 1 | 156 | 2.61e-60 | 192 |
| Msa0892010 | AT4G28880.3 | 60.127 | 158 | 57 | 2 | 1 | 154 | 1 | 156 | 2.79e-60 | 192 |
| Msa0892010 | AT4G28880.2 | 60.127 | 158 | 57 | 2 | 1 | 154 | 1 | 156 | 2.79e-60 | 192 |
| Msa0892010 | AT4G28880.1 | 60.127 | 158 | 57 | 2 | 1 | 154 | 1 | 156 | 2.79e-60 | 192 |
| Msa0892010 | AT4G28880.4 | 60.127 | 158 | 57 | 2 | 1 | 154 | 1 | 156 | 2.79e-60 | 192 |
| Msa0892010 | AT3G23340.2 | 60.294 | 136 | 52 | 1 | 21 | 154 | 7 | 142 | 1.63e-55 | 180 |
| Msa0892010 | AT4G08800.1 | 54.140 | 157 | 36 | 4 | 1 | 154 | 1 | 124 | 3.31e-44 | 147 |
| Msa0892010 | AT3G03940.1 | 33.533 | 167 | 95 | 4 | 4 | 154 | 133 | 299 | 5.11e-23 | 94.7 |
| Msa0892010 | AT2G25760.1 | 30.178 | 169 | 100 | 4 | 4 | 154 | 100 | 268 | 2.04e-22 | 92.8 |
| Msa0892010 | AT2G25760.2 | 30.178 | 169 | 100 | 4 | 4 | 154 | 100 | 268 | 2.05e-22 | 92.8 |
| Msa0892010 | AT5G18190.2 | 32.335 | 167 | 97 | 4 | 4 | 154 | 123 | 289 | 5.78e-22 | 91.7 |
| Msa0892010 | AT5G18190.1 | 32.335 | 167 | 97 | 4 | 4 | 154 | 123 | 289 | 5.78e-22 | 91.7 |
| Msa0892010 | AT3G13670.1 | 29.630 | 162 | 97 | 3 | 9 | 154 | 137 | 297 | 1.12e-21 | 90.9 |
| Msa0892010 | AT5G58380.1 | 30.519 | 154 | 95 | 6 | 5 | 151 | 8 | 156 | 1.57e-11 | 61.6 |
| Msa0892010 | AT1G74740.1 | 29.114 | 158 | 103 | 3 | 2 | 151 | 52 | 208 | 2.91e-11 | 60.8 |
Find 45 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAGATTGAAGGAGATTT+AGG | 0.215104 | 6_1:-69676535 | None:intergenic |
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 6_1:+69677650 | Msa0892010:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 6_1:+69677447 | Msa0892010:CDS |
| TCTTTCGGAGAGATCTATTT+AGG | 0.249141 | 6_1:+69676753 | Msa0892010:CDS |
| TTCCGTCTTGGGAGGAAAAT+TGG | 0.260322 | 6_1:+69676723 | Msa0892010:CDS |
| TTCTTCATTAGTTTGAATAT+TGG | 0.282133 | 6_1:-69676864 | None:intergenic |
| AATCTCCTTCAATCTCATTA+TGG | 0.329418 | 6_1:+69676539 | Msa0892010:five_prime_UTR |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 6_1:+69677651 | Msa0892010:CDS |
| GGTTTAATGGAACCTCGAAT+TGG | 0.394217 | 6_1:+69676693 | Msa0892010:exon |
| AAAATTGGTAGCGGATCTTT+CGG | 0.404618 | 6_1:+69676738 | Msa0892010:CDS |
| TTGGGAATAAGTTCCGTCTT+GGG | 0.445582 | 6_1:+69676712 | Msa0892010:CDS |
| GTTTAATGGAACCTCGAATT+GGG | 0.447782 | 6_1:+69676694 | Msa0892010:exon |
| TCTTATGCTTGCTGATCAAA+TGG | 0.460267 | 6_1:+69677490 | Msa0892010:CDS |
| AGAAGAAAGGAGGGAGAGTG+AGG | 0.479987 | 6_1:-69676612 | None:intergenic |
| ACACCGGACCATTTCACATT+CGG | 0.480710 | 6_1:-69677371 | None:intergenic |
| CTGGGATACCGAATGTGAAA+TGG | 0.480856 | 6_1:+69677363 | Msa0892010:CDS |
| ATTGGGAATAAGTTCCGTCT+TGG | 0.488327 | 6_1:+69676711 | Msa0892010:CDS |
| ATCCTAGTGATGGATTTACT+TGG | 0.499759 | 6_1:+69677410 | Msa0892010:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 6_1:+69677424 | Msa0892010:CDS |
| CGGAACTTATTCCCAATTCG+AGG | 0.514181 | 6_1:-69676705 | None:intergenic |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 6_1:+69677644 | Msa0892010:CDS |
| TAGGTGTACATCATTGACTT+TGG | 0.518918 | 6_1:+69677784 | Msa0892010:intron |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 6_1:-69677434 | None:intergenic |
| GAAGTATCGATTACAGAAGA+AGG | 0.525475 | 6_1:+69677176 | Msa0892010:CDS |
| GTGAGCCATAATGAGATTGA+AGG | 0.527400 | 6_1:-69676544 | None:intergenic |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 6_1:-69677647 | None:intergenic |
| GTGAAATGGTCCGGTGTCGA+AGG | 0.536640 | 6_1:+69677377 | Msa0892010:CDS |
| AACGATGGAGAGTGAGATTG+AGG | 0.540164 | 6_1:-69676585 | None:intergenic |
| TGAGGATGGATGTGAGATTG+AGG | 0.543014 | 6_1:-69676567 | None:intergenic |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 6_1:+69677643 | Msa0892010:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 6_1:-69677433 | None:intergenic |
| ATTGTACTCTCCTTCGACAC+CGG | 0.548807 | 6_1:-69677387 | None:intergenic |
| ATGGAGAGTGAGATTGAGGA+TGG | 0.549491 | 6_1:-69676581 | None:intergenic |
| GAGGATGGATGTGAGATTGA+GGG | 0.553579 | 6_1:-69676566 | None:intergenic |
| GCGTCATCGTAGAAGAAGAA+AGG | 0.556564 | 6_1:-69676625 | None:intergenic |
| AGAGTACAATATCCTAGTGA+TGG | 0.570391 | 6_1:+69677400 | Msa0892010:CDS |
| GGAGAGTGAGGCTTCAACGA+TGG | 0.576455 | 6_1:-69676600 | None:intergenic |
| ATACCGAATGTGAAATGGTC+CGG | 0.578759 | 6_1:+69677368 | Msa0892010:CDS |
| CATCGTAGAAGAAGAAAGGA+GGG | 0.589477 | 6_1:-69676621 | None:intergenic |
| GGAATAAGTTCCGTCTTGGG+AGG | 0.606788 | 6_1:+69676715 | Msa0892010:CDS |
| TCATCGTAGAAGAAGAAAGG+AGG | 0.621114 | 6_1:-69676622 | None:intergenic |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 6_1:+69677654 | Msa0892010:CDS |
| CTTGGGAGGAAAATTGGTAG+CGG | 0.633001 | 6_1:+69676729 | Msa0892010:CDS |
| GGCCAAGTAAATCCATCACT+AGG | 0.640405 | 6_1:-69677412 | None:intergenic |
| CACGCCTCCCTAAACCCATG+AGG | 0.734143 | 6_1:-69677658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTGAATTTT+AGG | + | chr6_1:69676811-69676830 | Msa0892010:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | + | chr6_1:69676812-69676831 | Msa0892010:intron | 10.0% |
| !!! | TTTTTTATTCTTTTGAATTT+TGG | + | chr6_1:69676944-69676963 | Msa0892010:intron | 10.0% |
| !!! | TTTTTTTTTTTGTGAATTTT+AGG | + | chr6_1:69676811-69676830 | Msa0892010:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | + | chr6_1:69676812-69676831 | Msa0892010:intron | 10.0% |
| !!! | TTTTTTATTCTTTTGAATTT+TGG | + | chr6_1:69676944-69676963 | Msa0892010:intron | 10.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | - | chr6_1:69676912-69676931 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | - | chr6_1:69676913-69676932 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | + | chr6_1:69677447-69677466 | Msa0892010:CDS | 15.0% |
| !!! | ATGATCATAAATTTTAAGAA+AGG | - | chr6_1:69677721-69677740 | None:intergenic | 15.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | - | chr6_1:69676912-69676931 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | - | chr6_1:69676913-69676932 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | + | chr6_1:69677447-69677466 | Msa0892010:CDS | 15.0% |
| !!! | ATGATCATAAATTTTAAGAA+AGG | - | chr6_1:69677721-69677740 | None:intergenic | 15.0% |
| !!! | TTCAATTCTGATTTTCAATT+AGG | + | chr6_1:69676671-69676690 | Msa0892010:five_prime_UTR | 20.0% |
| !!! | TCAATTCTGATTTTCAATTA+GGG | + | chr6_1:69676672-69676691 | Msa0892010:five_prime_UTR | 20.0% |
| !!! | TAATTTTGTGTTTTTGTTTC+AGG | + | chr6_1:69676839-69676858 | Msa0892010:intron | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | - | chr6_1:69676867-69676886 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | - | chr6_1:69676982-69677001 | None:intergenic | 20.0% |
| !! | TTAAGACATTATAAGAAAAG+TGG | - | chr6_1:69677556-69677575 | None:intergenic | 20.0% |
| !!! | TTCAATTCTGATTTTCAATT+AGG | + | chr6_1:69676671-69676690 | Msa0892010:five_prime_UTR | 20.0% |
| !!! | TCAATTCTGATTTTCAATTA+GGG | + | chr6_1:69676672-69676691 | Msa0892010:five_prime_UTR | 20.0% |
| !!! | TAATTTTGTGTTTTTGTTTC+AGG | + | chr6_1:69676839-69676858 | Msa0892010:intron | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | - | chr6_1:69676867-69676886 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | - | chr6_1:69676982-69677001 | None:intergenic | 20.0% |
| !! | TTAAGACATTATAAGAAAAG+TGG | - | chr6_1:69677556-69677575 | None:intergenic | 20.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | + | chr6_1:69676680-69676699 | Msa0892010:exon | 25.0% |
| ! | ATCACAAAAAAGCAAGAAAT+TGG | - | chr6_1:69676791-69676810 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTTGATGAGAA+GGG | + | chr6_1:69676995-69677014 | Msa0892010:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | + | chr6_1:69677075-69677094 | Msa0892010:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | + | chr6_1:69677204-69677223 | Msa0892010:intron | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | - | chr6_1:69677262-69677281 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | - | chr6_1:69677263-69677282 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | + | chr6_1:69677264-69677283 | Msa0892010:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | + | chr6_1:69677303-69677322 | Msa0892010:intron | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | + | chr6_1:69677615-69677634 | Msa0892010:CDS | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | + | chr6_1:69676680-69676699 | Msa0892010:exon | 25.0% |
| ! | ATCACAAAAAAGCAAGAAAT+TGG | - | chr6_1:69676791-69676810 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTTGATGAGAA+GGG | + | chr6_1:69676995-69677014 | Msa0892010:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | + | chr6_1:69677075-69677094 | Msa0892010:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | + | chr6_1:69677204-69677223 | Msa0892010:intron | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | - | chr6_1:69677262-69677281 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | - | chr6_1:69677263-69677282 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | + | chr6_1:69677264-69677283 | Msa0892010:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | + | chr6_1:69677303-69677322 | Msa0892010:intron | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | + | chr6_1:69677615-69677634 | Msa0892010:CDS | 25.0% |
| AATGAGATTGAAGGAGATTT+AGG | - | chr6_1:69676538-69676557 | None:intergenic | 30.0% | |
| AATCTCCTTCAATCTCATTA+TGG | + | chr6_1:69676539-69676558 | Msa0892010:five_prime_UTR | 30.0% | |
| GTTATTGAAGTTTGATGAGA+AGG | + | chr6_1:69676994-69677013 | Msa0892010:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | + | chr6_1:69677083-69677102 | Msa0892010:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | + | chr6_1:69677084-69677103 | Msa0892010:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | + | chr6_1:69677101-69677120 | Msa0892010:intron | 30.0% | |
| GATTACAGAAGAAGGTAATT+AGG | + | chr6_1:69677184-69677203 | Msa0892010:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | + | chr6_1:69677312-69677331 | Msa0892010:intron | 30.0% | |
| TGAATAAATCCTCAAGACTA+GGG | - | chr6_1:69677436-69677455 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | - | chr6_1:69677437-69677456 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | - | chr6_1:69677523-69677542 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | - | chr6_1:69677524-69677543 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | + | chr6_1:69677616-69677635 | Msa0892010:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | - | chr6_1:69677746-69677765 | None:intergenic | 30.0% | |
| TTCATATTTGCCTCTTATGT+AGG | + | chr6_1:69677765-69677784 | Msa0892010:intron | 30.0% | |
| AATGAGATTGAAGGAGATTT+AGG | - | chr6_1:69676538-69676557 | None:intergenic | 30.0% | |
| AATCTCCTTCAATCTCATTA+TGG | + | chr6_1:69676539-69676558 | Msa0892010:five_prime_UTR | 30.0% | |
| GTTATTGAAGTTTGATGAGA+AGG | + | chr6_1:69676994-69677013 | Msa0892010:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | + | chr6_1:69677083-69677102 | Msa0892010:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | + | chr6_1:69677084-69677103 | Msa0892010:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | + | chr6_1:69677101-69677120 | Msa0892010:intron | 30.0% | |
| GATTACAGAAGAAGGTAATT+AGG | + | chr6_1:69677184-69677203 | Msa0892010:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | + | chr6_1:69677312-69677331 | Msa0892010:intron | 30.0% | |
| TGAATAAATCCTCAAGACTA+GGG | - | chr6_1:69677436-69677455 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | - | chr6_1:69677437-69677456 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | - | chr6_1:69677523-69677542 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | - | chr6_1:69677524-69677543 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | + | chr6_1:69677616-69677635 | Msa0892010:CDS | 30.0% |
| AATTGATACATAACAAGCGT+TGG | - | chr6_1:69677746-69677765 | None:intergenic | 30.0% | |
| TTCATATTTGCCTCTTATGT+AGG | + | chr6_1:69677765-69677784 | Msa0892010:intron | 30.0% | |
| GTTTAATGGAACCTCGAATT+GGG | + | chr6_1:69676694-69676713 | Msa0892010:exon | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | + | chr6_1:69676738-69676757 | Msa0892010:CDS | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | + | chr6_1:69676753-69676772 | Msa0892010:CDS | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | + | chr6_1:69677133-69677152 | Msa0892010:intron | 35.0% |
| !! | GAAGTATCGATTACAGAAGA+AGG | + | chr6_1:69677176-69677195 | Msa0892010:CDS | 35.0% |
| ! | GATGATTGATTAGGTTAGTC+TGG | + | chr6_1:69677213-69677232 | Msa0892010:intron | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | + | chr6_1:69677322-69677341 | Msa0892010:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | + | chr6_1:69677323-69677342 | Msa0892010:intron | 35.0% |
| GTTTCTTTCCTTTGTTAGCT+GGG | + | chr6_1:69677345-69677364 | Msa0892010:intron | 35.0% | |
| AGAGTACAATATCCTAGTGA+TGG | + | chr6_1:69677400-69677419 | Msa0892010:CDS | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | + | chr6_1:69677410-69677429 | Msa0892010:CDS | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | + | chr6_1:69677490-69677509 | Msa0892010:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | + | chr6_1:69677651-69677670 | Msa0892010:CDS | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | - | chr6_1:69677778-69677797 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | + | chr6_1:69677784-69677803 | Msa0892010:intron | 35.0% |
| GTTTAATGGAACCTCGAATT+GGG | + | chr6_1:69676694-69676713 | Msa0892010:exon | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | + | chr6_1:69676738-69676757 | Msa0892010:CDS | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | + | chr6_1:69676753-69676772 | Msa0892010:CDS | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | + | chr6_1:69677133-69677152 | Msa0892010:intron | 35.0% |
| !! | GAAGTATCGATTACAGAAGA+AGG | + | chr6_1:69677176-69677195 | Msa0892010:CDS | 35.0% |
| ! | GATGATTGATTAGGTTAGTC+TGG | + | chr6_1:69677213-69677232 | Msa0892010:intron | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | + | chr6_1:69677322-69677341 | Msa0892010:intron | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | + | chr6_1:69677323-69677342 | Msa0892010:intron | 35.0% |
| GTTTCTTTCCTTTGTTAGCT+GGG | + | chr6_1:69677345-69677364 | Msa0892010:intron | 35.0% | |
| AGAGTACAATATCCTAGTGA+TGG | + | chr6_1:69677400-69677419 | Msa0892010:CDS | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | + | chr6_1:69677410-69677429 | Msa0892010:CDS | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | + | chr6_1:69677490-69677509 | Msa0892010:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | + | chr6_1:69677651-69677670 | Msa0892010:CDS | 35.0% | |
| ATGATGTACACCTACATAAG+AGG | - | chr6_1:69677778-69677797 | None:intergenic | 35.0% | |
| !! | TAGGTGTACATCATTGACTT+TGG | + | chr6_1:69677784-69677803 | Msa0892010:intron | 35.0% |
| GTGAGCCATAATGAGATTGA+AGG | - | chr6_1:69676547-69676566 | None:intergenic | 40.0% | |
| CATCGTAGAAGAAGAAAGGA+GGG | - | chr6_1:69676624-69676643 | None:intergenic | 40.0% | |
| TCATCGTAGAAGAAGAAAGG+AGG | - | chr6_1:69676625-69676644 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | + | chr6_1:69676693-69676712 | Msa0892010:exon | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | + | chr6_1:69676711-69676730 | Msa0892010:CDS | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | + | chr6_1:69676712-69676731 | Msa0892010:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | - | chr6_1:69676728-69676747 | None:intergenic | 40.0% |
| GGTTTCTTTCCTTTGTTAGC+TGG | + | chr6_1:69677344-69677363 | Msa0892010:intron | 40.0% | |
| ATACCGAATGTGAAATGGTC+CGG | + | chr6_1:69677368-69677387 | Msa0892010:CDS | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | + | chr6_1:69677493-69677512 | Msa0892010:intron | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | + | chr6_1:69677494-69677513 | Msa0892010:intron | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | - | chr6_1:69677621-69677640 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | + | chr6_1:69677643-69677662 | Msa0892010:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | + | chr6_1:69677644-69677663 | Msa0892010:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | - | chr6_1:69677650-69677669 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | + | chr6_1:69677650-69677669 | Msa0892010:CDS | 40.0% | |
| GTGAGCCATAATGAGATTGA+AGG | - | chr6_1:69676547-69676566 | None:intergenic | 40.0% | |
| CATCGTAGAAGAAGAAAGGA+GGG | - | chr6_1:69676624-69676643 | None:intergenic | 40.0% | |
| TCATCGTAGAAGAAGAAAGG+AGG | - | chr6_1:69676625-69676644 | None:intergenic | 40.0% | |
| GGTTTAATGGAACCTCGAAT+TGG | + | chr6_1:69676693-69676712 | Msa0892010:exon | 40.0% | |
| ATTGGGAATAAGTTCCGTCT+TGG | + | chr6_1:69676711-69676730 | Msa0892010:CDS | 40.0% | |
| TTGGGAATAAGTTCCGTCTT+GGG | + | chr6_1:69676712-69676731 | Msa0892010:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | - | chr6_1:69676728-69676747 | None:intergenic | 40.0% |
| GGTTTCTTTCCTTTGTTAGC+TGG | + | chr6_1:69677344-69677363 | Msa0892010:intron | 40.0% | |
| ATACCGAATGTGAAATGGTC+CGG | + | chr6_1:69677368-69677387 | Msa0892010:CDS | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | + | chr6_1:69677493-69677512 | Msa0892010:intron | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | + | chr6_1:69677494-69677513 | Msa0892010:intron | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | - | chr6_1:69677621-69677640 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | + | chr6_1:69677643-69677662 | Msa0892010:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | + | chr6_1:69677644-69677663 | Msa0892010:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | - | chr6_1:69677650-69677669 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | + | chr6_1:69677650-69677669 | Msa0892010:CDS | 40.0% | |
| GAGGATGGATGTGAGATTGA+GGG | - | chr6_1:69676569-69676588 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | - | chr6_1:69676570-69676589 | None:intergenic | 45.0% | |
| ATGGAGAGTGAGATTGAGGA+TGG | - | chr6_1:69676584-69676603 | None:intergenic | 45.0% | |
| AACGATGGAGAGTGAGATTG+AGG | - | chr6_1:69676588-69676607 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+AGG | - | chr6_1:69676628-69676647 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | - | chr6_1:69676708-69676727 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | + | chr6_1:69676723-69676742 | Msa0892010:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | + | chr6_1:69676729-69676748 | Msa0892010:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | + | chr6_1:69677230-69677249 | Msa0892010:intron | 45.0% | |
| TTCGGTATCCCAGCTAACAA+AGG | - | chr6_1:69677356-69677375 | None:intergenic | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | + | chr6_1:69677363-69677382 | Msa0892010:CDS | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | - | chr6_1:69677374-69677393 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | - | chr6_1:69677390-69677409 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | - | chr6_1:69677415-69677434 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | + | chr6_1:69677424-69677443 | Msa0892010:CDS | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | + | chr6_1:69677654-69677673 | Msa0892010:CDS | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | - | chr6_1:69676569-69676588 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | - | chr6_1:69676570-69676589 | None:intergenic | 45.0% | |
| ATGGAGAGTGAGATTGAGGA+TGG | - | chr6_1:69676584-69676603 | None:intergenic | 45.0% | |
| AACGATGGAGAGTGAGATTG+AGG | - | chr6_1:69676588-69676607 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+AGG | - | chr6_1:69676628-69676647 | None:intergenic | 45.0% | |
| CGGAACTTATTCCCAATTCG+AGG | - | chr6_1:69676708-69676727 | None:intergenic | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | + | chr6_1:69676723-69676742 | Msa0892010:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | + | chr6_1:69676729-69676748 | Msa0892010:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | + | chr6_1:69677230-69677249 | Msa0892010:intron | 45.0% | |
| TTCGGTATCCCAGCTAACAA+AGG | - | chr6_1:69677356-69677375 | None:intergenic | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | + | chr6_1:69677363-69677382 | Msa0892010:CDS | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | - | chr6_1:69677374-69677393 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | - | chr6_1:69677390-69677409 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | - | chr6_1:69677415-69677434 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | + | chr6_1:69677424-69677443 | Msa0892010:CDS | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | + | chr6_1:69677654-69677673 | Msa0892010:CDS | 45.0% | |
| AGAAGAAAGGAGGGAGAGTG+AGG | - | chr6_1:69676615-69676634 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | + | chr6_1:69676715-69676734 | Msa0892010:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | - | chr6_1:69677245-69677264 | None:intergenic | 50.0% | |
| AGAAGAAAGGAGGGAGAGTG+AGG | - | chr6_1:69676615-69676634 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | + | chr6_1:69676715-69676734 | Msa0892010:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | - | chr6_1:69677245-69677264 | None:intergenic | 50.0% | |
| GGAGAGTGAGGCTTCAACGA+TGG | - | chr6_1:69676603-69676622 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | + | chr6_1:69677377-69677396 | Msa0892010:CDS | 55.0% |
| GGAGAGTGAGGCTTCAACGA+TGG | - | chr6_1:69676603-69676622 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | + | chr6_1:69677377-69677396 | Msa0892010:CDS | 55.0% |
| CACGCCTCCCTAAACCCATG+AGG | - | chr6_1:69677661-69677680 | None:intergenic | 60.0% | |
| CACGCCTCCCTAAACCCATG+AGG | - | chr6_1:69677661-69677680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 69676521 | 69677825 | 69676521 | ID=Msa0892010;Name=Msa0892010 |
| chr6_1 | mRNA | 69676521 | 69677825 | 69676521 | ID=Msa0892010-mRNA-1;Parent=Msa0892010;Name=Msa0892010-mRNA-1;_AED=0.20;_eAED=0.21;_QI=178|0.4|0.33|1|1|1|6|0|154 |
| chr6_1 | exon | 69676521 | 69676774 | 69676521 | ID=Msa0892010-mRNA-1:exon:12178;Parent=Msa0892010-mRNA-1 |
| chr6_1 | exon | 69676861 | 69676901 | 69676861 | ID=Msa0892010-mRNA-1:exon:12179;Parent=Msa0892010-mRNA-1 |
| chr6_1 | exon | 69677134 | 69677197 | 69677134 | ID=Msa0892010-mRNA-1:exon:12180;Parent=Msa0892010-mRNA-1 |
| chr6_1 | exon | 69677363 | 69677511 | 69677363 | ID=Msa0892010-mRNA-1:exon:12181;Parent=Msa0892010-mRNA-1 |
| chr6_1 | exon | 69677593 | 69677688 | 69677593 | ID=Msa0892010-mRNA-1:exon:12182;Parent=Msa0892010-mRNA-1 |
| chr6_1 | exon | 69677787 | 69677825 | 69677787 | ID=Msa0892010-mRNA-1:exon:12183;Parent=Msa0892010-mRNA-1 |
| chr6_1 | five_prime_UTR | 69676521 | 69676698 | 69676521 | ID=Msa0892010-mRNA-1:five_prime_utr;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69676699 | 69676774 | 69676699 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69676861 | 69676901 | 69676861 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69677134 | 69677197 | 69677134 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69677363 | 69677511 | 69677363 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69677593 | 69677688 | 69677593 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| chr6_1 | CDS | 69677787 | 69677825 | 69677787 | ID=Msa0892010-mRNA-1:cds;Parent=Msa0892010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
