AlfalfaGEDB | Msa0892420

M. sativa cultivar zhongmu-4 / Msa0892420

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0892420	KAG4922308.1	39.269	219	118	6	187	395	15	228	7.28e-30	142
Msa0892420	KAG4922308.1	48.214	560	249	9	754	1280	1	552	6.43e-144	492
Msa0892420	KAG4922308.1	51.331	1352	546	25	20	1280	93	1423	0.0	1261
Msa0892420	KAG4922308.1	57.123	723	284	12	39	750	988	1695	0.0	801
Msa0892420	KAG4922308.1	60.000	75	27	2	1288	1361	1553	1625	4.10e-13	88.2
Msa0892420	KAG4922308.1	60.000	75	27	2	1288	1361	682	754	2.92e-13	88.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0892420	sp\|O65468\|CRK8_ARATH	41.471	639	301	9	166	737	33	665	8.74e-161	502
Msa0892420	sp\|O65468\|CRK8_ARATH	31.383	376	161	11	997	1280	34	404	1.78e-40	164
Msa0892420	sp\|O65468\|CRK8_ARATH	36.364	253	140	9	742	985	31	271	1.27e-30	133
Msa0892420	sp\|O65468\|CRK8_ARATH	44.037	109	52	3	49	155	170	271	1.21e-14	82.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0892420	A0A396HHE6	37.445	227	126	7	177	390	28	251	3.23e-31	145
Msa0892420	A0A396HHE6	63.087	149	13	2	1288	1396	748	894	1.58e-32	149
Msa0892420	A0A396HHE6	71.499	607	95	6	743	1280	21	618	0.0	840
Msa0892420	A0A396HHE6	82.299	757	86	3	39	751	140	892	0.0	1243

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0892420	MtrunA17_Chr6g0474901	82.299	757	86	3	39	751	140	892	0.0	1243
Msa0892420	MtrunA17_Chr6g0474901	71.499	607	95	6	743	1280	21	618	0.0	840
Msa0892420	MtrunA17_Chr6g0474901	63.087	149	13	2	1288	1396	748	894	3.03e-36	149
Msa0892420	MtrunA17_Chr6g0474901	37.445	227	126	7	177	390	28	251	6.22e-35	145
Msa0892420	MtrunA17_Chr6g0474871	78.752	753	112	5	40	751	146	891	0.0	1163
Msa0892420	MtrunA17_Chr6g0474871	67.550	604	123	7	743	1280	21	617	0.0	767
Msa0892420	MtrunA17_Chr6g0474871	65.541	148	9	2	1289	1396	748	893	2.04e-38	156
Msa0892420	MtrunA17_Chr6g0474871	36.522	230	128	6	167	382	23	248	2.41e-33	140
Msa0892420	MtrunA17_Chr6g0474811	77.530	761	116	7	41	751	144	899	0.0	1160
Msa0892420	MtrunA17_Chr6g0474811	65.579	613	128	10	743	1280	21	625	0.0	744

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0892420	AT4G23160.1	41.315	639	302	9	166	737	39	671	1.41e-161	502
Msa0892420	AT4G23160.1	31.383	376	161	11	997	1280	40	410	2.29e-41	164
Msa0892420	AT4G23160.1	36.364	253	140	9	742	985	37	277	1.35e-31	133
Msa0892420	AT4G23160.1	44.037	109	52	3	49	155	176	277	1.20e-15	82.8
Msa0892420	AT4G23160.1	47.945	73	35	2	1289	1361	541	610	1.63e-11	69.3
Msa0892420	AT4G05200.1	42.154	650	284	13	167	737	24	660	9.50e-153	478
Msa0892420	AT4G05200.1	42.972	249	131	5	728	972	7	248	5.02e-47	181
Msa0892420	AT4G05200.1	47.423	97	46	1	46	142	157	248	1.34e-19	95.5
Msa0892420	AT4G05200.1	29.870	231	119	7	997	1188	24	250	2.75e-18	91.3
Msa0892420	AT4G05200.1	65.574	61	21	0	1213	1273	331	391	1.48e-15	82.4

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Find 254 sgRNAs with CRISPR-Local

Find 672 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGAGGAAGCAGC+AGG	0.593985	6_1:-72332745	Msa0892420:CDS
AAAACTGCAGAGGAAGCAGC+AGG	0.593985	6_1:-72340969	Msa0892420:CDS
AAAATCGACATTTATAGTTT+TGG	0.235835	6_1:-72329944	Msa0892420:CDS
AAAATTCCATACTGTTATAG+TGG	0.443894	6_1:-72332302	Msa0892420:CDS
AAAATTCCGTACTGTTAATG+TGG	0.555049	6_1:-72340532	Msa0892420:CDS
AAACATTTACCTGCATTTCC+TGG	0.387558	6_1:+72331726	None:intergenic
AAACTCTTCTACACCTTGAT+TGG	0.296511	6_1:+72330593	None:intergenic
AAAGTGTCTTTCACGTCCAA+AGG	0.515827	6_1:-72340415	Msa0892420:CDS
AAATCCGACATTTATAGTTT+TGG	0.258466	6_1:-72338730	Msa0892420:CDS
AACAACAAAAGTCGTTAACT+TGG	0.436245	6_1:-72339113	Msa0892420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGGAAAAGAAAGAATAGT+TGG	+	chr6_1:72329434-72329453	None:intergenic	30.0%
TATATCCTTGGTATTACATG+TGG	-	chr6_1:72329461-72329480	Msa0892420:intron	30.0%
TCATACCTAATATTACAGCT+AGG	+	chr6_1:72329760-72329779	None:intergenic	30.0%
AAAATTCCGTACTGTTAATG+TGG	-	chr6_1:72329981-72330000	Msa0892420:CDS	30.0%
TTTCTTCCACATTAACAGTA+CGG	+	chr6_1:72329990-72330009	None:intergenic	30.0%
TACTGTTAATGTGGAAGAAA+TGG	-	chr6_1:72329990-72330009	Msa0892420:CDS	30.0%
TCAATGTGTGAAAAATGCAA+CGG	-	chr6_1:72330062-72330081	Msa0892420:intron	30.0%
AGAAATTCCATGGTCAAATT+TGG	-	chr6_1:72330428-72330447	Msa0892420:intron	30.0%
GAAATTCCATGGTCAAATTT+GGG	-	chr6_1:72330429-72330448	Msa0892420:intron	30.0%
TCGAATCCTACATGTAAAAT+TGG	+	chr6_1:72330588-72330607	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	72329284	72341251	72329284	ID=Msa0892420;Name=Msa0892420
chr6_1	mRNA	72329284	72341251	72329284	ID=Msa0892420-mRNA-1;Parent=Msa0892420;Name=Msa0892420-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.30\|0.28\|1\|1\|1\|14\|0\|1396
chr6_1	exon	72341131	72341251	72341131	ID=Msa0892420-mRNA-1:exon:12398;Parent=Msa0892420-mRNA-1
chr6_1	exon	72339965	72341044	72339965	ID=Msa0892420-mRNA-1:exon:12397;Parent=Msa0892420-mRNA-1
chr6_1	exon	72339615	72339727	72339615	ID=Msa0892420-mRNA-1:exon:12396;Parent=Msa0892420-mRNA-1
chr6_1	exon	72339255	72339465	72339255	ID=Msa0892420-mRNA-1:exon:12395;Parent=Msa0892420-mRNA-1
chr6_1	exon	72338904	72339141	72338904	ID=Msa0892420-mRNA-1:exon:12394;Parent=Msa0892420-mRNA-1
chr6_1	exon	72338639	72338798	72338639	ID=Msa0892420-mRNA-1:exon:12393;Parent=Msa0892420-mRNA-1
chr6_1	exon	72338085	72338393	72338085	ID=Msa0892420-mRNA-1:exon:12392;Parent=Msa0892420-mRNA-1
chr6_1	exon	72332269	72333199	72332269	ID=Msa0892420-mRNA-1:exon:12391;Parent=Msa0892420-mRNA-1
chr6_1	exon	72331736	72332185	72331736	ID=Msa0892420-mRNA-1:exon:12390;Parent=Msa0892420-mRNA-1
chr6_1	exon	72330933	72331054	72330933	ID=Msa0892420-mRNA-1:exon:12389;Parent=Msa0892420-mRNA-1
chr6_1	exon	72330584	72330667	72330584	ID=Msa0892420-mRNA-1:exon:12388;Parent=Msa0892420-mRNA-1
chr6_1	exon	72329853	72330011	72329853	ID=Msa0892420-mRNA-1:exon:12387;Parent=Msa0892420-mRNA-1
chr6_1	exon	72329520	72329623	72329520	ID=Msa0892420-mRNA-1:exon:12386;Parent=Msa0892420-mRNA-1
chr6_1	exon	72329284	72329392	72329284	ID=Msa0892420-mRNA-1:exon:12385;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72341131	72341251	72341131	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72339965	72341044	72339965	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72339615	72339727	72339615	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72339255	72339465	72339255	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72338904	72339141	72338904	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72338639	72338798	72338639	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72338085	72338393	72338085	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72332269	72333199	72332269	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72331736	72332185	72331736	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72330933	72331054	72330933	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72330584	72330667	72330584	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72329853	72330011	72329853	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72329520	72329623	72329520	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1
chr6_1	CDS	72329284	72329392	72329284	ID=Msa0892420-mRNA-1:cds;Parent=Msa0892420-mRNA-1

Gene Sequence

>Msa0892420

ATGGATTGTTCATGTGCAGAGGTGATATACTCTCTCAGCTCTGTCATAAATGCAAAGTTAATGCAACTCAAAAACTGTCCTCAGTCTCGGATTGCTCTTTGTCCAAAGAAGCTATCATTTGGCAACGTATCTAACACAACAAGCTTCAATGCTTTATTGTCTTCGACTATGCGTAAAACTGCAGAGGAAGCAGCAGGTTCACTTACTGCTGACAACAACAAGAAGTTTGCCACAAACGAAGCACGGATTTCTGAATCTCAGACCCTTTACTGTCTAGCTCAGTGCACGCCGGACTTGTCCCCTAATGATTGCAGAACCTGTCTCACTAGTGCTATTGCATCTCTTCCACAGTGTTGTGATGGAAAGCAGGGTGGGAGAGTTCTTTTTCCTAGCTGTAATATTAGGTATGAACTATTTCCTTTTTATAGGTCTATTAATGCTCCATCACCAAATGAGCTTGTTCCTAAAACAAATGATTCAAAACAAGATTCTAGATCTTCACAAGATCCAATTTATCTTTCCTATAATTGCTCAAGAAACAACAGTACAATCACTAACAAAAGTTTCAAATTACTTCTCTCTTATCTGTCCTCCAACGCCACAAGTGGCGAAAAATTCCGTACTGTTAATGTGGAAGAAATGGTGTACGGCCTCTTCATGTGTCGAGGTGACATTCCCGTTCGCCTCTGTGGTCAATGTGTGAAAAATGCAACGGATCAAATATACTCAAAGTGTCTTTCACGTCCAAAGGGTATAATTTGGTACAGCCACTGCTTGGTTCACTATTCTGATCGGAAGTTCTTCTCTAACATCGAAACAAGTCCTATGTATAGCGATATAAATATCACCAAAGATTCTGTCACAGACCAAAACTTGTTCATTAGTACATTATCGAATCAGTTATATCAACTTGCGAATGATACAGGGGACAGTGATGAAAGATATACGACTAATTCAGTAAAACTGAATGATGTACAAACCTTGTATACTCTTGGACAATGTACGCGCGATTTGTCTGGTCGGGATTGCGCTTCTTGTCTATATGATGTGATCGTTACAGAAATTCCATGGTCAAATTTGGGTAGTGTCGGGGGCAGAATTTTGTACCCTAGCTGCAATTTGAGGTTTGAATTGTTCCAATTTTACATGGAGGGTGATGAAGCTCAGCCCCCTGGGAGTCCTCCATTACCAGGAAATGCAGAAAGTGCCACTTTAGAGCCACTGCAATTCGATTGGGTGGTAATTGAAGCAGCAACCAACAACTTTTCTAAGGACAATTACATTGGCAAAGGAGGGTTTGGAGAGGTTTACAAGGGTATCCTTTTTGACGGACGAGAAGTGGCCATAAAAAGGCTTTCAAAAGTTTCTAAGCAAGGTGTAGAGGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAACCTAGTGGCTTTTATTGGTTTTTGCCTTGAAGAACATGAGAAAATACTTATTTATGAATTTGTGCCCAACAAAAGCCTTGATTACTTTCTATTTGATTCTCAACAACAAAAGTCGTTAACTTGGGTTGAACGCTTCAACATCATAGGAGGAATTGTTCGAGGGATTCTTTATTTGCATGAAAATTCTCGACTCAAAGTTATACATCGGGATCTCAAACCTAGCAATATTCTTCTAGACAAAAATATGATTCCTAAAATTTCAGATTTTGGTTTGGCTCGAATCGTTGAAATAAGTCAAGATGAGGGAAACACAAATAGAATTGTTGGAACATTTGGTTACATGTCTCCGGAATATGCAATGCTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTTATGCTTTTGGAGATTATTGCTGGAAAGAAGAATATAAGTTCATTTACTCCACACCATGTTGCTTATGACCTCTTGAGTTATGTGAGTGTATGGAGACAGTGGATGGATCAAACACCTTTAAGTATATTGGATCCATATATTAAAGAAGATTATTCTACAACTGAAGTCATTAAGTGCATTCAGATTGGTTTATTATGTGCTCAGCATGACCCGGATGCTAGACCTTCAATTGTGACAGTTGCTTCTTGTCTTAGCAATTATGCAGTTGAATTACCAATTCCACACGAACCTGCATTTTTCTTGCATGGTAGAACTTATTCAAACATTCTTGCACAAGAATCAAGTTCTACTCAATCTGCCAATAGTTCTGCACTATTCTCAAACAATCAAATGTCGGCACAAGACTCTACTTTTCTGTATTCCATTTGTTCCTCCAATCGTACCACAACCAATAGCACCTACCAAATCAATACCAGGACCCTCCTCTCTTCCTTGTTATCAAAAGCCGTCGGCAACACCGAATTCTACTACACCACAGTCACTAGTATAAACCCCTCTGATTCTGTCTATGGATTGTTCATGTGCAGAGGTGATGTACTCTCTCAGTTCTGTCAAAAATGCATAGTTAATGCAACAGAAAAACTGTCCTCAGACTCGGATTGCCATTTATCCAAACGAGCTGTCATTTGGTACGATGAGTGCATGGTTCGATACTCCAACACCTCTTTCTTTTCCATTGTTGGTACACGTCCTGGTGTTTTTTTGGTTAGTAATTTCAATGTCTTAAACACAAAAAGCTTCAGGACTTCGTTGTTTTCGACGATGAATAAAACTGCAGAGGAAGCAGCAGGTCCACTTACTGGTGACAACAACAAGAAGTTTGCCACAAGTAATGCATCTGTTTCAGAAAATCAGACCCTTTACTGTCTAGCTCAGTGCACGCAGGACTTGTCCCCTAATGATTGCAGAACCTGTCTCAATGATGCTATTGGATCTCTTCCACAGTGTTGTGATGGAAAGCAGGGTGGGAGAGTTCTTTTTCCTAGCTGTAATATTAGGTATGAACTATTTCCTTTTTATAGGTCTAATAATGCTCCTTCACCAAATGAGCTTGTTCCTCGAACAAATCATTCAAAAGAAGATTCTAGATTTTCACAAGATCCAATTTATCTTTCCTATAATTGCTCAAGAAACGACACTACAAATACAATCACTAACAAAAACTTCAAATTACTTCTCTCTTATCTGTCCTCCAATGCCACAAATGGCGAAAAATTCCATACTGTTATAGTGGAAGAAATGGTGTACGGCCTCTTCTTGTGTCGAGGGTATAATTGGCACAGCCACTGCTTGCTTCACTTTTCTGATCGGAAGTTCTTCTCAAACATCGAAACAAGTCCTATGTATAGCGATATAAATATAACCAAAGATTCCGTCACAAATCAAAACCTGTTCACTAGTACATTATCAAATCATTTATCTCAACTTGCGAATGATACAGGAGACAATGATGAAAGATACAAGACTAATTCATTAAAATTGAATGATGTACAAACTTTATATACTCTTGGACAATGTACGCGGGATTTGTCTGGTCAGGATTGCGCTACTTGTCTAAATGATGTGATCGTTGCAGCAATTCCATGGTCAAATTTGGGTAGTGTTGGGGGAAGAATTATGTACCCTAGCTGCAATCTGAGGTTTGAATTGTTCCAATTTTACATGGAAGGTGACGAAGCTCAGCCGCCAGGGAGTCCTCCATTACCAGGAAATGCAGTTGGTGAAGAAAGTGCCACTTTAGAGCCACTGCAATTCGATTGGGTGGTAATTGAAGCAGCAACCAACAACTTTTCTAAGGACAATTACATTGGCAAAGGAGGGTTTGGAGAGGTTTACAAGGGTATTCTTCTTGATCGACGAGAAGTGGCTATAAAAAGGCTTTCAAAAAGTTCCAATCAAGGTGTAGAAGAGTTTAAGAATGAATGGTTATATGTCTCCGGAATATGCAATGCTTGGACAATTTTCAGAAAAATCGACATTTATAGTTTTGGAGTTATGCTTTTAGAGATTATTGCTGGAAAGAAGAATAAAAGTTCATGTACTCCACACCAAGTTGCTTATGACCTCTTGAATTATGTGAGTGTATGGAGACAGTGGATAGATCAAACACCTTTAAGTATTTTGGACCCAAATATTAAGGAAGATTATTCTACAAATGAAGTCATTAAGTGCATTCAGATTGGTCTAACTTATTCTGACGTTCTTGCACAAGAATCAAGTTCTACTCAATCAGCCAATAGTTCTGCACTATTCTCAAACAATCAATTGTCGGCAAGTACTTTTATTCCTCGATAG

Protein sequence

>Msa0892420

MDCSCAEVIYSLSSVINAKLMQLKNCPQSRIALCPKKLSFGNVSNTTSFNALLSSTMRKTAEEAAGSLTADNNKKFATNEARISESQTLYCLAQCTPDLSPNDCRTCLTSAIASLPQCCDGKQGGRVLFPSCNIRYELFPFYRSINAPSPNELVPKTNDSKQDSRSSQDPIYLSYNCSRNNSTITNKSFKLLLSYLSSNATSGEKFRTVNVEEMVYGLFMCRGDIPVRLCGQCVKNATDQIYSKCLSRPKGIIWYSHCLVHYSDRKFFSNIETSPMYSDINITKDSVTDQNLFISTLSNQLYQLANDTGDSDERYTTNSVKLNDVQTLYTLGQCTRDLSGRDCASCLYDVIVTEIPWSNLGSVGGRILYPSCNLRFELFQFYMEGDEAQPPGSPPLPGNAESATLEPLQFDWVVIEAATNNFSKDNYIGKGGFGEVYKGILFDGREVAIKRLSKVSKQGVEEFKNEVLLIAKLQHRNLVAFIGFCLEEHEKILIYEFVPNKSLDYFLFDSQQQKSLTWVERFNIIGGIVRGILYLHENSRLKVIHRDLKPSNILLDKNMIPKISDFGLARIVEISQDEGNTNRIVGTFGYMSPEYAMLGQFSEKSDIYSFGVMLLEIIAGKKNISSFTPHHVAYDLLSYVSVWRQWMDQTPLSILDPYIKEDYSTTEVIKCIQIGLLCAQHDPDARPSIVTVASCLSNYAVELPIPHEPAFFLHGRTYSNILAQESSSTQSANSSALFSNNQMSAQDSTFLYSICSSNRTTTNSTYQINTRTLLSSLLSKAVGNTEFYYTTVTSINPSDSVYGLFMCRGDVLSQFCQKCIVNATEKLSSDSDCHLSKRAVIWYDECMVRYSNTSFFSIVGTRPGVFLVSNFNVLNTKSFRTSLFSTMNKTAEEAAGPLTGDNNKKFATSNASVSENQTLYCLAQCTQDLSPNDCRTCLNDAIGSLPQCCDGKQGGRVLFPSCNIRYELFPFYRSNNAPSPNELVPRTNHSKEDSRFSQDPIYLSYNCSRNDTTNTITNKNFKLLLSYLSSNATNGEKFHTVIVEEMVYGLFLCRGYNWHSHCLLHFSDRKFFSNIETSPMYSDINITKDSVTNQNLFTSTLSNHLSQLANDTGDNDERYKTNSLKLNDVQTLYTLGQCTRDLSGQDCATCLNDVIVAAIPWSNLGSVGGRIMYPSCNLRFELFQFYMEGDEAQPPGSPPLPGNAVGEESATLEPLQFDWVVIEAATNNFSKDNYIGKGGFGEVYKGILLDRREVAIKRLSKSSNQGVEEFKNEWLYVSGICNAWTIFRKIDIYSFGVMLLEIIAGKKNKSSCTPHQVAYDLLNYVSVWRQWIDQTPLSILDPNIKEDYSTNEVIKCIQIGLTYSDVLAQESSSTQSANSSALFSNNQLSASTFIPR*