Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893400 | XP_004516775.1 | 37.722 | 281 | 126 | 6 | 1 | 275 | 14 | 251 | 4.05e-43 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893400 | sp|Q5XEM9|ALFL5_ARATH | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 1.01e-22 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893400 | A0A1S2Z860 | 37.722 | 281 | 126 | 6 | 1 | 275 | 14 | 251 | 1.93e-43 | 167 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0893400 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893400 | MtrunA17_Chr6g0457221 | 55.000 | 140 | 59 | 2 | 26 | 165 | 44 | 179 | 3.51e-39 | 147 |
| Msa0893400 | MtrunA17_Chr6g0457161 | 51.613 | 155 | 68 | 3 | 7 | 158 | 31 | 181 | 7.44e-38 | 143 |
| Msa0893400 | MtrunA17_Chr8g0343441 | 79.012 | 81 | 17 | 0 | 267 | 347 | 176 | 256 | 7.13e-31 | 117 |
| Msa0893400 | MtrunA17_Chr2g0329821 | 75.862 | 58 | 14 | 0 | 289 | 346 | 193 | 250 | 4.60e-26 | 104 |
| Msa0893400 | MtrunA17_Chr1g0150821 | 76.364 | 55 | 12 | 1 | 293 | 347 | 210 | 263 | 1.11e-23 | 98.6 |
| Msa0893400 | MtrunA17_Chr2g0300241 | 68.333 | 60 | 16 | 2 | 290 | 347 | 195 | 253 | 1.35e-21 | 92.4 |
| Msa0893400 | MtrunA17_Chr4g0076771 | 69.231 | 52 | 16 | 0 | 292 | 343 | 201 | 252 | 4.84e-21 | 90.9 |
| Msa0893400 | MtrunA17_Chr4g0006381 | 69.091 | 55 | 16 | 1 | 293 | 347 | 189 | 242 | 3.35e-20 | 88.2 |
| Msa0893400 | MtrunA17_Chr7g0242511 | 65.455 | 55 | 18 | 1 | 293 | 347 | 189 | 242 | 6.85e-19 | 84.7 |
| Msa0893400 | MtrunA17_Chr5g0402951 | 34.483 | 116 | 67 | 2 | 23 | 135 | 160 | 269 | 2.25e-14 | 73.6 |
| Msa0893400 | MtrunA17_Chr5g0402961 | 39.175 | 97 | 56 | 1 | 23 | 119 | 162 | 255 | 1.24e-13 | 71.6 |
| Msa0893400 | MtrunA17_Chr4g0045521 | 35.514 | 107 | 58 | 3 | 28 | 131 | 183 | 281 | 3.35e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0893400 | AT5G38690.2 | 30.657 | 274 | 159 | 6 | 26 | 275 | 30 | 296 | 9.86e-28 | 114 |
| Msa0893400 | AT5G38690.1 | 30.657 | 274 | 159 | 6 | 26 | 275 | 30 | 296 | 9.86e-28 | 114 |
| Msa0893400 | AT1G67780.2 | 42.177 | 147 | 69 | 3 | 7 | 137 | 11 | 157 | 2.17e-27 | 112 |
| Msa0893400 | AT1G67780.1 | 42.177 | 147 | 69 | 3 | 7 | 137 | 11 | 157 | 2.17e-27 | 112 |
| Msa0893400 | AT1G67270.1 | 48.246 | 114 | 56 | 1 | 9 | 119 | 5 | 118 | 2.26e-25 | 107 |
| Msa0893400 | AT5G20510.2 | 71.186 | 59 | 16 | 1 | 289 | 347 | 162 | 219 | 5.48e-24 | 98.6 |
| Msa0893400 | AT5G20510.1 | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 1.02e-23 | 99.0 |
| Msa0893400 | AT3G42790.1 | 74.138 | 58 | 14 | 1 | 289 | 346 | 193 | 249 | 1.97e-23 | 97.8 |
| Msa0893400 | AT2G02470.1 | 74.545 | 55 | 13 | 1 | 293 | 347 | 203 | 256 | 4.55e-23 | 97.1 |
| Msa0893400 | AT2G02470.2 | 74.545 | 55 | 13 | 1 | 293 | 347 | 194 | 247 | 6.07e-23 | 96.3 |
| Msa0893400 | AT5G26210.1 | 75.000 | 56 | 13 | 1 | 291 | 346 | 200 | 254 | 1.89e-22 | 95.1 |
| Msa0893400 | AT1G14510.1 | 68.519 | 54 | 17 | 0 | 293 | 346 | 198 | 251 | 2.30e-21 | 92.0 |
| Msa0893400 | AT5G05610.2 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 8.41e-19 | 84.7 |
| Msa0893400 | AT5G05610.1 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 8.41e-19 | 84.7 |
| Msa0893400 | AT3G11200.1 | 62.745 | 51 | 19 | 0 | 289 | 339 | 189 | 239 | 1.78e-17 | 81.3 |
| Msa0893400 | AT3G11200.2 | 62.745 | 51 | 19 | 0 | 289 | 339 | 176 | 226 | 2.38e-17 | 80.5 |
| Msa0893400 | AT2G23530.1 | 39.252 | 107 | 54 | 3 | 18 | 119 | 153 | 253 | 4.74e-14 | 73.6 |
| Msa0893400 | AT4G37110.3 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 1.94e-13 | 70.9 |
| Msa0893400 | AT4G37110.4 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 1.94e-13 | 70.9 |
| Msa0893400 | AT4G37110.2 | 33.846 | 130 | 82 | 3 | 23 | 152 | 165 | 290 | 5.02e-13 | 70.1 |
| Msa0893400 | AT4G37110.1 | 32.308 | 130 | 84 | 2 | 23 | 152 | 178 | 303 | 5.04e-13 | 70.1 |
Find 94 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6_1:-77590108 | Msa0893400:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6_1:+77590410 | None:intergenic |
| TTTATGATGGAGTTTGATTT+AGG | 0.207910 | 6_1:+77591288 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6_1:-77590088 | Msa0893400:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6_1:+77589756 | None:intergenic |
| TGAATTGGTGTTGGATTTAG+AGG | 0.320517 | 6_1:+77591204 | None:intergenic |
| TTATGATGGAGTTTGATTTA+GGG | 0.355183 | 6_1:+77591289 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6_1:-77590423 | Msa0893400:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6_1:-77590073 | Msa0893400:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6_1:+77590038 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6_1:+77589666 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6_1:-77590167 | Msa0893400:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6_1:+77590707 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6_1:+77590686 | None:intergenic |
| TAATTGATAATAATGCTATA+AGG | 0.408256 | 6_1:-77590012 | Msa0893400:CDS |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6_1:-77590408 | Msa0893400:CDS |
| GTTCGTATAGCCAAGGCATT+TGG | 0.417938 | 6_1:-77590515 | Msa0893400:CDS |
| TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6_1:+77589989 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6_1:-77590168 | Msa0893400:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6_1:-77590407 | Msa0893400:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6_1:-77590434 | Msa0893400:CDS |
| CATGTTGTTGCAAGTGGTGG+TGG | 0.430941 | 6_1:+77591173 | None:intergenic |
| TGGGGTGAGCAGCGATGGAA+GGG | 0.432655 | 6_1:+77591237 | None:intergenic |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6_1:-77590107 | Msa0893400:CDS |
| GGAATATATTGAATTGGTGT+TGG | 0.437660 | 6_1:+77591195 | None:intergenic |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6_1:+77589597 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6_1:-77590545 | Msa0893400:CDS |
| CTGGGGTGAGCAGCGATGGA+AGG | 0.443550 | 6_1:+77591236 | None:intergenic |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6_1:-77589690 | Msa0893400:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6_1:+77589561 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6_1:-77589674 | Msa0893400:CDS |
| GTGGTGGGAATATATTGAAT+TGG | 0.479017 | 6_1:+77591189 | None:intergenic |
| TATGATGGAGTTTGATTTAG+GGG | 0.479970 | 6_1:+77591290 | None:intergenic |
| GTGAGTCAAACCTGTCTAAG+AGG | 0.480314 | 6_1:+77590857 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.482752 | 6_1:-77590947 | Msa0893400:intron |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6_1:-77590433 | Msa0893400:CDS |
| GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6_1:-77589968 | Msa0893400:CDS |
| ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6_1:-77589945 | Msa0893400:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6_1:-77590163 | Msa0893400:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6_1:-77589611 | Msa0893400:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6_1:+77590039 | None:intergenic |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6_1:-77590053 | Msa0893400:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6_1:-77590894 | Msa0893400:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6_1:-77590544 | Msa0893400:CDS |
| ATGATGGAGTTTGATTTAGG+GGG | 0.519150 | 6_1:+77591291 | None:intergenic |
| GGGGTGAGCAGCGATGGAAG+GGG | 0.519456 | 6_1:+77591238 | None:intergenic |
| CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6_1:+77590181 | None:intergenic |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6_1:+77591119 | None:intergenic |
| GACAAAATTTGCTAGGAACA+CGG | 0.526762 | 6_1:+77591091 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6_1:+77590685 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6_1:+77590182 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.532955 | 6_1:-77591123 | Msa0893400:CDS |
| CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6_1:-77590182 | Msa0893400:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6_1:-77589760 | Msa0893400:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6_1:-77590743 | Msa0893400:intron |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6_1:-77589647 | Msa0893400:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6_1:-77589638 | Msa0893400:CDS |
| GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6_1:-77589990 | Msa0893400:CDS |
| ACAAAATTTGCTAGGAACAC+GGG | 0.544351 | 6_1:+77591092 | None:intergenic |
| GGGTGAGCAGCGATGGAAGG+GGG | 0.548394 | 6_1:+77591239 | None:intergenic |
| TTTCATGTTGTTGCAAGTGG+TGG | 0.560875 | 6_1:+77591170 | None:intergenic |
| ACACGTAAAACCAAATGCCT+TGG | 0.564029 | 6_1:+77590505 | None:intergenic |
| CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6_1:-77590181 | Msa0893400:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6_1:-77589610 | Msa0893400:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6_1:+77590156 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6_1:+77589598 | None:intergenic |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6_1:+77591118 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6_1:+77589622 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6_1:+77590121 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6_1:-77589639 | Msa0893400:CDS |
| ATGTTGTTGCAAGTGGTGGT+GGG | 0.579690 | 6_1:+77591174 | None:intergenic |
| GGATTTCATGTTGTTGCAAG+TGG | 0.580645 | 6_1:+77591167 | None:intergenic |
| GAGGAAGATGAAGATGAAGA+CGG | 0.585144 | 6_1:-77589726 | Msa0893400:CDS |
| GAATTGGTGTTGGATTTAGA+GGG | 0.594166 | 6_1:+77591205 | None:intergenic |
| ACCTGGTGACAAAATTTGCT+AGG | 0.596109 | 6_1:+77591084 | None:intergenic |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6_1:+77590115 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6_1:-77589546 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6_1:+77590078 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6_1:-77590522 | Msa0893400:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.609714 | 6_1:-77590749 | Msa0893400:intron |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6_1:-77590402 | Msa0893400:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6_1:-77590103 | Msa0893400:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6_1:-77590694 | Msa0893400:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6_1:-77589745 | Msa0893400:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6_1:-77590543 | Msa0893400:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6_1:+77590533 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6_1:-77590173 | Msa0893400:CDS |
| ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6_1:-77590188 | Msa0893400:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6_1:+77590530 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6_1:+77589667 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6_1:-77589711 | Msa0893400:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6_1:-77589702 | Msa0893400:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6_1:-77589766 | Msa0893400:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6_1:+77589599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6_1:77589885-77589904 | Msa0893400:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6_1:77590220-77590239 | Msa0893400:intron | 15.0% |
| !!! | TAATTGATAATAATGCTATA+AGG | - | chr6_1:77590842-77590861 | Msa0893400:intron | 15.0% |
| !!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6_1:77591064-77591083 | Msa0893400:intron | 15.0% |
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6_1:77589885-77589904 | Msa0893400:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6_1:77590220-77590239 | Msa0893400:intron | 15.0% |
| !!! | TAATTGATAATAATGCTATA+AGG | - | chr6_1:77590842-77590861 | Msa0893400:intron | 15.0% |
| !!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6_1:77591064-77591083 | Msa0893400:intron | 15.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6_1:77590028-77590047 | Msa0893400:CDS | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6_1:77590140-77590159 | Msa0893400:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6_1:77590747-77590766 | Msa0893400:intron | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6_1:77590977-77590996 | Msa0893400:intron | 20.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6_1:77590028-77590047 | Msa0893400:CDS | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6_1:77590140-77590159 | Msa0893400:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6_1:77590747-77590766 | Msa0893400:intron | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6_1:77590977-77590996 | Msa0893400:intron | 20.0% |
| !! | TTATGATGGAGTTTGATTTA+GGG | + | chr6_1:77589568-77589587 | None:intergenic | 25.0% |
| !! | TTTATGATGGAGTTTGATTT+AGG | + | chr6_1:77589569-77589588 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6_1:77589916-77589935 | None:intergenic | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6_1:77590226-77590245 | Msa0893400:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6_1:77590401-77590420 | Msa0893400:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6_1:77590402-77590421 | Msa0893400:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6_1:77590420-77590439 | Msa0893400:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6_1:77590421-77590440 | Msa0893400:CDS | 25.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6_1:77590447-77590466 | None:intergenic | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6_1:77590446-77590465 | Msa0893400:CDS | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6_1:77590447-77590466 | Msa0893400:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6_1:77590518-77590537 | Msa0893400:CDS | 25.0% |
| !!! | CATATTTGTTATTATGCTAC+AGG | - | chr6_1:77590624-77590643 | Msa0893400:intron | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6_1:77590746-77590765 | Msa0893400:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6_1:77590779-77590798 | None:intergenic | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6_1:77590781-77590800 | Msa0893400:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6_1:77590976-77590995 | Msa0893400:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6_1:77591026-77591045 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6_1:77591024-77591043 | Msa0893400:intron | 25.0% |
| !! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6_1:77591070-77591089 | Msa0893400:intron | 25.0% |
| !! | TTATGATGGAGTTTGATTTA+GGG | + | chr6_1:77589568-77589587 | None:intergenic | 25.0% |
| !! | TTTATGATGGAGTTTGATTT+AGG | + | chr6_1:77589569-77589588 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6_1:77589916-77589935 | None:intergenic | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6_1:77590226-77590245 | Msa0893400:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6_1:77590401-77590420 | Msa0893400:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6_1:77590402-77590421 | Msa0893400:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6_1:77590420-77590439 | Msa0893400:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6_1:77590421-77590440 | Msa0893400:CDS | 25.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6_1:77590447-77590466 | None:intergenic | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6_1:77590446-77590465 | Msa0893400:CDS | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6_1:77590447-77590466 | Msa0893400:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6_1:77590518-77590537 | Msa0893400:CDS | 25.0% |
| !!! | CATATTTGTTATTATGCTAC+AGG | - | chr6_1:77590624-77590643 | Msa0893400:intron | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6_1:77590746-77590765 | Msa0893400:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6_1:77590779-77590798 | None:intergenic | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6_1:77590781-77590800 | Msa0893400:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6_1:77590976-77590995 | Msa0893400:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6_1:77591026-77591045 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6_1:77591024-77591043 | Msa0893400:intron | 25.0% |
| !! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6_1:77591070-77591089 | Msa0893400:intron | 25.0% |
| ! | TATGATGGAGTTTGATTTAG+GGG | + | chr6_1:77589567-77589586 | None:intergenic | 30.0% |
| !! | GTTTATGGATTTTGTTTGAG+GGG | + | chr6_1:77589596-77589615 | None:intergenic | 30.0% |
| !! | GGTTTATGGATTTTGTTTGA+GGG | + | chr6_1:77589597-77589616 | None:intergenic | 30.0% |
| ! | ATTTAGAGGGATGATTTTCT+GGG | + | chr6_1:77589639-77589658 | None:intergenic | 30.0% |
| GGAATATATTGAATTGGTGT+TGG | + | chr6_1:77589662-77589681 | None:intergenic | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6_1:77590103-77590122 | Msa0893400:CDS | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6_1:77590104-77590123 | Msa0893400:CDS | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6_1:77590105-77590124 | Msa0893400:CDS | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6_1:77590283-77590302 | Msa0893400:intron | 30.0% | |
| CAAGATAGAAGCTGAAAAAT+TGG | - | chr6_1:77590389-77590408 | Msa0893400:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6_1:77590489-77590508 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6_1:77590490-77590509 | None:intergenic | 30.0% | |
| !! | ATTTGTTATTATGCTACAGG+AGG | - | chr6_1:77590627-77590646 | Msa0893400:intron | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6_1:77590742-77590761 | None:intergenic | 30.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6_1:77590751-77590770 | Msa0893400:intron | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6_1:77590818-77590837 | None:intergenic | 30.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6_1:77590909-77590928 | Msa0893400:CDS | 30.0% | |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6_1:77590913-77590932 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6_1:77590981-77591000 | Msa0893400:intron | 30.0% |
| ACAAGTATTAAGGATGTCAT+CGG | + | chr6_1:77591016-77591035 | None:intergenic | 30.0% | |
| ATGACATCCTTAATACTTGT+TGG | - | chr6_1:77591016-77591035 | Msa0893400:intron | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6_1:77591190-77591209 | None:intergenic | 30.0% | |
| ! | TATGATGGAGTTTGATTTAG+GGG | + | chr6_1:77589567-77589586 | None:intergenic | 30.0% |
| !! | GTTTATGGATTTTGTTTGAG+GGG | + | chr6_1:77589596-77589615 | None:intergenic | 30.0% |
| !! | GGTTTATGGATTTTGTTTGA+GGG | + | chr6_1:77589597-77589616 | None:intergenic | 30.0% |
| ! | ATTTAGAGGGATGATTTTCT+GGG | + | chr6_1:77589639-77589658 | None:intergenic | 30.0% |
| GGAATATATTGAATTGGTGT+TGG | + | chr6_1:77589662-77589681 | None:intergenic | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6_1:77590103-77590122 | Msa0893400:CDS | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6_1:77590104-77590123 | Msa0893400:CDS | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6_1:77590105-77590124 | Msa0893400:CDS | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6_1:77590283-77590302 | Msa0893400:intron | 30.0% | |
| CAAGATAGAAGCTGAAAAAT+TGG | - | chr6_1:77590389-77590408 | Msa0893400:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6_1:77590489-77590508 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6_1:77590490-77590509 | None:intergenic | 30.0% | |
| !! | ATTTGTTATTATGCTACAGG+AGG | - | chr6_1:77590627-77590646 | Msa0893400:intron | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6_1:77590742-77590761 | None:intergenic | 30.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6_1:77590751-77590770 | Msa0893400:intron | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6_1:77590818-77590837 | None:intergenic | 30.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6_1:77590909-77590928 | Msa0893400:CDS | 30.0% | |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6_1:77590913-77590932 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6_1:77590981-77591000 | Msa0893400:intron | 30.0% |
| ACAAGTATTAAGGATGTCAT+CGG | + | chr6_1:77591016-77591035 | None:intergenic | 30.0% | |
| ATGACATCCTTAATACTTGT+TGG | - | chr6_1:77591016-77591035 | Msa0893400:intron | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6_1:77591190-77591209 | None:intergenic | 30.0% | |
| ! | ATGATGGAGTTTGATTTAGG+GGG | + | chr6_1:77589566-77589585 | None:intergenic | 35.0% |
| !! | GGGTTTATGGATTTTGTTTG+AGG | + | chr6_1:77589598-77589617 | None:intergenic | 35.0% |
| ! | TTTAGAGGGATGATTTTCTG+GGG | + | chr6_1:77589638-77589657 | None:intergenic | 35.0% |
| ! | GATTTAGAGGGATGATTTTC+TGG | + | chr6_1:77589640-77589659 | None:intergenic | 35.0% |
| !! | GAATTGGTGTTGGATTTAGA+GGG | + | chr6_1:77589652-77589671 | None:intergenic | 35.0% |
| !! | TGAATTGGTGTTGGATTTAG+AGG | + | chr6_1:77589653-77589672 | None:intergenic | 35.0% |
| ! | GTGGTGGGAATATATTGAAT+TGG | + | chr6_1:77589668-77589687 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6_1:77589711-77589730 | None:intergenic | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6_1:77589765-77589784 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6_1:77589766-77589785 | None:intergenic | 35.0% |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6_1:77589790-77589809 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6_1:77589942-77589961 | Msa0893400:CDS | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6_1:77589955-77589974 | None:intergenic | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6_1:77589960-77589979 | Msa0893400:CDS | 35.0% |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6_1:77590111-77590130 | Msa0893400:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6_1:77590150-77590169 | None:intergenic | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6_1:77590431-77590450 | Msa0893400:CDS | 35.0% | |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6_1:77590819-77590838 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6_1:77590904-77590923 | None:intergenic | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6_1:77590905-77590924 | None:intergenic | 35.0% |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6_1:77591191-77591210 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6_1:77591204-77591223 | Msa0893400:five_prime_UTR | 35.0% |
| TGATATTCACACATTTCCCA+TGG | + | chr6_1:77591235-77591254 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6_1:77591296-77591315 | None:intergenic | 35.0% |
| ! | ATGATGGAGTTTGATTTAGG+GGG | + | chr6_1:77589566-77589585 | None:intergenic | 35.0% |
| !! | GGGTTTATGGATTTTGTTTG+AGG | + | chr6_1:77589598-77589617 | None:intergenic | 35.0% |
| ! | TTTAGAGGGATGATTTTCTG+GGG | + | chr6_1:77589638-77589657 | None:intergenic | 35.0% |
| ! | GATTTAGAGGGATGATTTTC+TGG | + | chr6_1:77589640-77589659 | None:intergenic | 35.0% |
| !! | GAATTGGTGTTGGATTTAGA+GGG | + | chr6_1:77589652-77589671 | None:intergenic | 35.0% |
| !! | TGAATTGGTGTTGGATTTAG+AGG | + | chr6_1:77589653-77589672 | None:intergenic | 35.0% |
| ! | GTGGTGGGAATATATTGAAT+TGG | + | chr6_1:77589668-77589687 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6_1:77589711-77589730 | None:intergenic | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6_1:77589765-77589784 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6_1:77589766-77589785 | None:intergenic | 35.0% |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6_1:77589790-77589809 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6_1:77589942-77589961 | Msa0893400:CDS | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6_1:77589955-77589974 | None:intergenic | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6_1:77589960-77589979 | Msa0893400:CDS | 35.0% |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6_1:77590111-77590130 | Msa0893400:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6_1:77590150-77590169 | None:intergenic | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6_1:77590431-77590450 | Msa0893400:CDS | 35.0% | |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6_1:77590819-77590838 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6_1:77590904-77590923 | None:intergenic | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6_1:77590905-77590924 | None:intergenic | 35.0% |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6_1:77591191-77591210 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6_1:77591204-77591223 | Msa0893400:five_prime_UTR | 35.0% |
| TGATATTCACACATTTCCCA+TGG | + | chr6_1:77591235-77591254 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6_1:77591296-77591315 | None:intergenic | 35.0% |
| !! | TTAGGGGGTGGATTTGATTT+TGG | + | chr6_1:77589551-77589570 | None:intergenic | 40.0% |
| !! | TTTGAGGGGTCGTTTTATGA+TGG | + | chr6_1:77589582-77589601 | None:intergenic | 40.0% |
| TTTCATGTTGTTGCAAGTGG+TGG | + | chr6_1:77589687-77589706 | None:intergenic | 40.0% | |
| GGATTTCATGTTGTTGCAAG+TGG | + | chr6_1:77589690-77589709 | None:intergenic | 40.0% | |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6_1:77589724-77589743 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6_1:77589725-77589744 | None:intergenic | 40.0% |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6_1:77589739-77589758 | None:intergenic | 40.0% | |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6_1:77589769-77589788 | Msa0893400:CDS | 40.0% |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6_1:77589773-77589792 | None:intergenic | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6_1:77589907-77589926 | Msa0893400:CDS | 40.0% |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6_1:77589987-77590006 | Msa0893400:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6_1:77590172-77590191 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6_1:77590195-77590214 | Msa0893400:CDS | 40.0% | |
| ACACGTAAAACCAAATGCCT+TGG | + | chr6_1:77590352-77590371 | None:intergenic | 40.0% | |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6_1:77590452-77590471 | Msa0893400:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6_1:77590455-77590474 | Msa0893400:CDS | 40.0% |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6_1:77590666-77590685 | Msa0893400:intron | 40.0% | |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6_1:77590736-77590755 | None:intergenic | 40.0% |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6_1:77590801-77590820 | Msa0893400:intron | 40.0% | |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6_1:77590868-77590887 | None:intergenic | 40.0% |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6_1:77590886-77590905 | Msa0893400:CDS | 40.0% | |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6_1:77591088-77591107 | Msa0893400:CDS | 40.0% |
| GAGGAAGATGAAGATGAAGA+CGG | - | chr6_1:77591128-77591147 | Msa0893400:CDS | 40.0% | |
| AATATGGCCCTGATGAATTC+TGG | - | chr6_1:77591180-77591199 | Msa0893400:five_prime_UTR | 40.0% | |
| !! | TTAGGGGGTGGATTTGATTT+TGG | + | chr6_1:77589551-77589570 | None:intergenic | 40.0% |
| !! | TTTGAGGGGTCGTTTTATGA+TGG | + | chr6_1:77589582-77589601 | None:intergenic | 40.0% |
| TTTCATGTTGTTGCAAGTGG+TGG | + | chr6_1:77589687-77589706 | None:intergenic | 40.0% | |
| GGATTTCATGTTGTTGCAAG+TGG | + | chr6_1:77589690-77589709 | None:intergenic | 40.0% | |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6_1:77589724-77589743 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6_1:77589725-77589744 | None:intergenic | 40.0% |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6_1:77589739-77589758 | None:intergenic | 40.0% | |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6_1:77589769-77589788 | Msa0893400:CDS | 40.0% |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6_1:77589773-77589792 | None:intergenic | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6_1:77589907-77589926 | Msa0893400:CDS | 40.0% |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6_1:77589987-77590006 | Msa0893400:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6_1:77590172-77590191 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6_1:77590195-77590214 | Msa0893400:CDS | 40.0% | |
| ACACGTAAAACCAAATGCCT+TGG | + | chr6_1:77590352-77590371 | None:intergenic | 40.0% | |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6_1:77590452-77590471 | Msa0893400:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6_1:77590455-77590474 | Msa0893400:CDS | 40.0% |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6_1:77590666-77590685 | Msa0893400:intron | 40.0% | |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6_1:77590736-77590755 | None:intergenic | 40.0% |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6_1:77590801-77590820 | Msa0893400:intron | 40.0% | |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6_1:77590868-77590887 | None:intergenic | 40.0% |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6_1:77590886-77590905 | Msa0893400:CDS | 40.0% | |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6_1:77591088-77591107 | Msa0893400:CDS | 40.0% |
| GAGGAAGATGAAGATGAAGA+CGG | - | chr6_1:77591128-77591147 | Msa0893400:CDS | 40.0% | |
| AATATGGCCCTGATGAATTC+TGG | - | chr6_1:77591180-77591199 | Msa0893400:five_prime_UTR | 40.0% | |
| ! | ATGGAGTTTGATTTAGGGGG+TGG | + | chr6_1:77589563-77589582 | None:intergenic | 45.0% |
| ATGTTGTTGCAAGTGGTGGT+GGG | + | chr6_1:77589683-77589702 | None:intergenic | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6_1:77589723-77589742 | None:intergenic | 45.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6_1:77589731-77589750 | Msa0893400:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6_1:77589738-77589757 | None:intergenic | 45.0% | |
| GTGAGTCAAACCTGTCTAAG+AGG | + | chr6_1:77590000-77590019 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6_1:77590171-77590190 | None:intergenic | 45.0% | |
| ! | GTTCGTATAGCCAAGGCATT+TGG | - | chr6_1:77590339-77590358 | Msa0893400:intron | 45.0% |
| CCATTGCCACACAATGAGTT+GGG | + | chr6_1:77590675-77590694 | None:intergenic | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6_1:77590673-77590692 | Msa0893400:CDS | 45.0% | |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6_1:77590701-77590720 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6_1:77590766-77590785 | Msa0893400:intron | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6_1:77590864-77590883 | Msa0893400:intron | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6_1:77591094-77591113 | Msa0893400:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6_1:77591101-77591120 | None:intergenic | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6_1:77591109-77591128 | Msa0893400:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6_1:77591207-77591226 | Msa0893400:five_prime_UTR | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6_1:77591215-77591234 | Msa0893400:five_prime_UTR | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6_1:77591216-77591235 | Msa0893400:five_prime_UTR | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6_1:77591244-77591263 | Msa0893400:five_prime_UTR | 45.0% | |
| ! | ATGGAGTTTGATTTAGGGGG+TGG | + | chr6_1:77589563-77589582 | None:intergenic | 45.0% |
| ATGTTGTTGCAAGTGGTGGT+GGG | + | chr6_1:77589683-77589702 | None:intergenic | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6_1:77589723-77589742 | None:intergenic | 45.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6_1:77589731-77589750 | Msa0893400:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6_1:77589738-77589757 | None:intergenic | 45.0% | |
| GTGAGTCAAACCTGTCTAAG+AGG | + | chr6_1:77590000-77590019 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6_1:77590171-77590190 | None:intergenic | 45.0% | |
| ! | GTTCGTATAGCCAAGGCATT+TGG | - | chr6_1:77590339-77590358 | Msa0893400:intron | 45.0% |
| CCATTGCCACACAATGAGTT+GGG | + | chr6_1:77590675-77590694 | None:intergenic | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6_1:77590673-77590692 | Msa0893400:CDS | 45.0% | |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6_1:77590701-77590720 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6_1:77590766-77590785 | Msa0893400:intron | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6_1:77590864-77590883 | Msa0893400:intron | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6_1:77591094-77591113 | Msa0893400:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6_1:77591101-77591120 | None:intergenic | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6_1:77591109-77591128 | Msa0893400:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6_1:77591207-77591226 | Msa0893400:five_prime_UTR | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6_1:77591215-77591234 | Msa0893400:five_prime_UTR | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6_1:77591216-77591235 | Msa0893400:five_prime_UTR | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6_1:77591244-77591263 | Msa0893400:five_prime_UTR | 45.0% | |
| CATGTTGTTGCAAGTGGTGG+TGG | + | chr6_1:77589684-77589703 | None:intergenic | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6_1:77589719-77589738 | Msa0893400:CDS | 50.0% | |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6_1:77590310-77590329 | Msa0893400:intron | 50.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6_1:77590327-77590346 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6_1:77590332-77590351 | Msa0893400:intron | 50.0% | |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6_1:77590672-77590691 | Msa0893400:CDS | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6_1:77590676-77590695 | None:intergenic | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6_1:77591143-77591162 | Msa0893400:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6_1:77591152-77591171 | Msa0893400:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6_1:77591243-77591262 | Msa0893400:five_prime_UTR | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6_1:77591258-77591277 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6_1:77591259-77591278 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6_1:77591260-77591279 | None:intergenic | 50.0% | |
| CATGTTGTTGCAAGTGGTGG+TGG | + | chr6_1:77589684-77589703 | None:intergenic | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6_1:77589719-77589738 | Msa0893400:CDS | 50.0% | |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6_1:77590310-77590329 | Msa0893400:intron | 50.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6_1:77590327-77590346 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6_1:77590332-77590351 | Msa0893400:intron | 50.0% | |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6_1:77590672-77590691 | Msa0893400:CDS | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6_1:77590676-77590695 | None:intergenic | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6_1:77591143-77591162 | Msa0893400:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6_1:77591152-77591171 | Msa0893400:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6_1:77591243-77591262 | Msa0893400:five_prime_UTR | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6_1:77591258-77591277 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6_1:77591259-77591278 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6_1:77591260-77591279 | None:intergenic | 50.0% | |
| CAGCGATGGAAGGGGGTTTA+TGG | + | chr6_1:77589611-77589630 | None:intergenic | 55.0% | |
| !!! | TTTTCTGGGGTGAGCAGCGA+TGG | + | chr6_1:77589625-77589644 | None:intergenic | 55.0% |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6_1:77590160-77590179 | Msa0893400:CDS | 55.0% | |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6_1:77590309-77590328 | Msa0893400:intron | 55.0% |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6_1:77590311-77590330 | Msa0893400:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6_1:77590681-77590700 | Msa0893400:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6_1:77590686-77590705 | Msa0893400:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6_1:77590687-77590706 | Msa0893400:CDS | 55.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6_1:77591164-77591183 | Msa0893400:exon | 55.0% | |
| CAGCGATGGAAGGGGGTTTA+TGG | + | chr6_1:77589611-77589630 | None:intergenic | 55.0% | |
| !!! | TTTTCTGGGGTGAGCAGCGA+TGG | + | chr6_1:77589625-77589644 | None:intergenic | 55.0% |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6_1:77590160-77590179 | Msa0893400:CDS | 55.0% | |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6_1:77590309-77590328 | Msa0893400:intron | 55.0% |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6_1:77590311-77590330 | Msa0893400:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6_1:77590681-77590700 | Msa0893400:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6_1:77590686-77590705 | Msa0893400:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6_1:77590687-77590706 | Msa0893400:CDS | 55.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6_1:77591164-77591183 | Msa0893400:exon | 55.0% | |
| TGGGGTGAGCAGCGATGGAA+GGG | + | chr6_1:77589620-77589639 | None:intergenic | 60.0% | |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6_1:77590324-77590343 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6_1:77590691-77590710 | Msa0893400:CDS | 60.0% |
| TGGGGTGAGCAGCGATGGAA+GGG | + | chr6_1:77589620-77589639 | None:intergenic | 60.0% | |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6_1:77590324-77590343 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6_1:77590691-77590710 | Msa0893400:CDS | 60.0% |
| GGGTGAGCAGCGATGGAAGG+GGG | + | chr6_1:77589618-77589637 | None:intergenic | 65.0% | |
| GGGGTGAGCAGCGATGGAAG+GGG | + | chr6_1:77589619-77589638 | None:intergenic | 65.0% | |
| CTGGGGTGAGCAGCGATGGA+AGG | + | chr6_1:77589621-77589640 | None:intergenic | 65.0% | |
| GGGTGAGCAGCGATGGAAGG+GGG | + | chr6_1:77589618-77589637 | None:intergenic | 65.0% | |
| GGGGTGAGCAGCGATGGAAG+GGG | + | chr6_1:77589619-77589638 | None:intergenic | 65.0% | |
| CTGGGGTGAGCAGCGATGGA+AGG | + | chr6_1:77589621-77589640 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 77589548 | 77591328 | 77589548 | ID=Msa0893400;Name=Msa0893400 |
| chr6_1 | mRNA | 77589548 | 77591328 | 77589548 | ID=Msa0893400-mRNA-1;Parent=Msa0893400;Name=Msa0893400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=153|1|0.83|1|1|1|6|0|347 |
| chr6_1 | exon | 77589548 | 77589790 | 77589548 | ID=Msa0893400-mRNA-1:exon:12872;Parent=Msa0893400-mRNA-1 |
| chr6_1 | exon | 77589874 | 77590230 | 77589874 | ID=Msa0893400-mRNA-1:exon:12871;Parent=Msa0893400-mRNA-1 |
| chr6_1 | exon | 77590403 | 77590571 | 77590403 | ID=Msa0893400-mRNA-1:exon:12870;Parent=Msa0893400-mRNA-1 |
| chr6_1 | exon | 77590670 | 77590756 | 77590670 | ID=Msa0893400-mRNA-1:exon:12869;Parent=Msa0893400-mRNA-1 |
| chr6_1 | exon | 77590868 | 77590965 | 77590868 | ID=Msa0893400-mRNA-1:exon:12868;Parent=Msa0893400-mRNA-1 |
| chr6_1 | exon | 77591086 | 77591328 | 77591086 | ID=Msa0893400-mRNA-1:exon:12867;Parent=Msa0893400-mRNA-1 |
| chr6_1 | five_prime_UTR | 77591176 | 77591328 | 77591176 | ID=Msa0893400-mRNA-1:five_prime_utr;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77591086 | 77591175 | 77591086 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77590868 | 77590965 | 77590868 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77590670 | 77590756 | 77590670 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77590403 | 77590571 | 77590403 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77589874 | 77590230 | 77589874 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| chr6_1 | CDS | 77589548 | 77589790 | 77589548 | ID=Msa0893400-mRNA-1:cds;Parent=Msa0893400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
