Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895730 | AES76151.1 | 93.182 | 264 | 12 | 1 | 1 | 264 | 1 | 258 | 1.51e-180 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895730 | sp|Q568K5|NAA40_DANRE | 35.193 | 233 | 125 | 4 | 21 | 251 | 8 | 216 | 3.71e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0895730 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895730 | MtrunA17_Chr6g0479551 | 93.511 | 262 | 11 | 1 | 1 | 262 | 1 | 256 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895730 | AT1G18335.1 | 50.943 | 265 | 118 | 4 | 3 | 263 | 6 | 262 | 4.73e-77 | 239 |
| Msa0895730 | AT1G18335.3 | 51.136 | 264 | 117 | 4 | 3 | 262 | 6 | 261 | 2.36e-76 | 237 |
| Msa0895730 | AT1G18335.2 | 51.136 | 264 | 117 | 4 | 3 | 262 | 6 | 261 | 2.36e-76 | 237 |
Find 107 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTACATCTGGTTATTT+TGG | 0.070234 | 6_1:-83968562 | Msa0895730:three_prime_UTR |
| CTCTGTATATATTGTTTAAC+AGG | 0.263897 | 6_1:+83972742 | None:intergenic |
| TCGTCCTCAGTTGGTTCGTC+TGG | 0.282255 | 6_1:+83969260 | None:intergenic |
| CTCTCATAGGACACGGCTTC+TGG | 0.284691 | 6_1:-83969308 | Msa0895730:intron |
| CTCTCATAGGACACGGCTTC+TGG | 0.304675 | 6_1:-83969665 | Msa0895730:intron |
| CTCTCGTAGGACATGGCTTC+TGG | 0.324029 | 6_1:-83969486 | Msa0895730:intron |
| GATTTCGAAGCGGCGATAAT+CGG | 0.344464 | 6_1:+83973919 | None:intergenic |
| ACCATTGGATAAACTTTAGA+AGG | 0.346375 | 6_1:+83970596 | None:intergenic |
| TTAGCTTAAGAGCTCTCTTC+AGG | 0.355390 | 6_1:+83968928 | None:intergenic |
| CTCGTCCTCAGTTGGTTGAA+TGG | 0.361456 | 6_1:+83969440 | None:intergenic |
| CACAAATATATAGAGTGCTT+TGG | 0.361953 | 6_1:+83971806 | None:intergenic |
| TCGTCCTCAGTTGGTTCAAT+GGG | 0.369735 | 6_1:+83969620 | None:intergenic |
| TGTACATTACCGCTTTGTTT+TGG | 0.381346 | 6_1:-83971682 | Msa0895730:CDS |
| ATGATAGTGGTCCCTTGGTT+GGG | 0.395182 | 6_1:-83971707 | Msa0895730:CDS |
| TCTTGCCACTCAGCCCCATA+TGG | 0.400551 | 6_1:+83971864 | None:intergenic |
| ACAAATATATAGAGTGCTTT+GGG | 0.404138 | 6_1:+83971807 | None:intergenic |
| CAAAGCAGCTTATAGCATAA+AGG | 0.405600 | 6_1:-83973960 | Msa0895730:CDS |
| GATGATAGTGGTCCCTTGGT+TGG | 0.407826 | 6_1:-83971708 | Msa0895730:CDS |
| ATTTCGAAGCGGCGATAATC+GGG | 0.416262 | 6_1:+83973920 | None:intergenic |
| TTAGCCAATAGGATGTATTT+CGG | 0.421672 | 6_1:-83968955 | Msa0895730:CDS |
| CTTCTCATGTTAACTGCATT+GGG | 0.422239 | 6_1:-83968428 | Msa0895730:three_prime_UTR |
| CTTAACATGGAAGGGCCATA+TGG | 0.422994 | 6_1:-83971879 | Msa0895730:CDS |
| CTCGTCCTCAGTTGGTTCAA+TGG | 0.423035 | 6_1:+83969619 | None:intergenic |
| TATTGAGCTTATTGCCCAAA+AGG | 0.424507 | 6_1:-83971571 | Msa0895730:intron |
| GCTTCTCATGTTAACTGCAT+TGG | 0.428232 | 6_1:-83968429 | Msa0895730:three_prime_UTR |
| TCGTCCTCAGTTGGTTGAAT+GGG | 0.429700 | 6_1:+83969441 | None:intergenic |
| CATGTCCAGGGGAAAGGATT+GGG | 0.436033 | 6_1:-83971612 | Msa0895730:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_1:-83971835 | Msa0895730:CDS |
| AGCTCGAACTTGCAGGAGTT+AGG | 0.457690 | 6_1:+83968468 | None:intergenic |
| AATTCCGAAATACATCCTAT+TGG | 0.458467 | 6_1:+83968951 | None:intergenic |
| TGCTTTGATGAGTTGTTCAT+TGG | 0.464316 | 6_1:+83973976 | None:intergenic |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_1:+83971607 | None:intergenic |
| GTTGGTTCAATGGGGTCGGC+GGG | 0.474207 | 6_1:+83969629 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_1:-83971598 | Msa0895730:CDS |
| CTCAGTTGGTTCAATGGGGT+CGG | 0.482613 | 6_1:+83969625 | None:intergenic |
| GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6_1:+83974132 | None:intergenic |
| TCATGTCCAGGGGAAAGGAT+TGG | 0.485082 | 6_1:-83971613 | Msa0895730:CDS |
| CGTCCTCAGTTGGTTCGTCT+GGG | 0.486557 | 6_1:+83969261 | None:intergenic |
| TCCAAAATAACCAGATGTAA+AGG | 0.486804 | 6_1:+83968561 | None:intergenic |
| ATATATACAGAGACTTCTTA+AGG | 0.487032 | 6_1:-83972731 | Msa0895730:intron |
| GAGAAGACAACATTGTTCAC+TGG | 0.488003 | 6_1:-83971756 | Msa0895730:CDS |
| GTTGGTTGAATGGGTTCAGC+AGG | 0.488550 | 6_1:+83969450 | None:intergenic |
| TTAACATGGAAGGGCCATAT+GGG | 0.490128 | 6_1:-83971878 | Msa0895730:CDS |
| ACAGCTCGAGTCTCATGTCC+AGG | 0.491056 | 6_1:-83971625 | Msa0895730:CDS |
| TCATCTTGACGACTAGTTGA+AGG | 0.493506 | 6_1:+83971726 | None:intergenic |
| AGTTGGTTCGTCTGGGTCGT+CGG | 0.500211 | 6_1:+83969268 | None:intergenic |
| CAATGCTAACCTTTCGGCAT+CGG | 0.501747 | 6_1:+83969098 | None:intergenic |
| AGTTGGTTCAATGGGGTCGG+CGG | 0.503645 | 6_1:+83969628 | None:intergenic |
| ACATGAGGAAGTTAGCCAAT+AGG | 0.507973 | 6_1:-83968966 | Msa0895730:CDS |
| CATTTCTTGTAGAACTGCAT+GGG | 0.509580 | 6_1:-83971252 | Msa0895730:intron |
| CTATCAGTGTGCTTAAAGTC+AGG | 0.516924 | 6_1:-83972787 | Msa0895730:CDS |
| GAGTCTCATGTCCAGGGGAA+AGG | 0.528275 | 6_1:-83971618 | Msa0895730:CDS |
| ACATTTCTTGTAGAACTGCA+TGG | 0.529239 | 6_1:-83971253 | Msa0895730:intron |
| GCCACTCAATAATGCGATGA+AGG | 0.535725 | 6_1:+83968602 | None:intergenic |
| TAACCTTTCGGCATCGGCAT+CGG | 0.539405 | 6_1:+83969104 | None:intergenic |
| AAATCTCAGCTTAACATGGA+AGG | 0.540966 | 6_1:-83971888 | Msa0895730:intron |
| ACTCTATATATTTGTGCATG+AGG | 0.543039 | 6_1:-83971799 | Msa0895730:CDS |
| ATTTCAGCCTCGTCCTCAGT+TGG | 0.543893 | 6_1:+83969251 | None:intergenic |
| ATTTCAGCCTCGTCCTCAGT+TGG | 0.543893 | 6_1:+83969432 | None:intergenic |
| TAATCTTCTCTCTGTTGCGA+CGG | 0.544615 | 6_1:+83974111 | None:intergenic |
| TCAAGATGATAGTGGTCCCT+TGG | 0.547034 | 6_1:-83971712 | Msa0895730:CDS |
| ACCTTCTAAAGTTTATCCAA+TGG | 0.547249 | 6_1:-83970597 | Msa0895730:intron |
| GAGTTCATTGCTGCTGAGTG+TGG | 0.547515 | 6_1:+83974181 | None:intergenic |
| AGAAGACAACATTGTTCACT+GGG | 0.550471 | 6_1:-83971755 | Msa0895730:CDS |
| TATATATTGTTTAACAGGAG+AGG | 0.556533 | 6_1:+83972747 | None:intergenic |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.556815 | 6_1:-83971853 | Msa0895730:CDS |
| TCCTTCATCGCATTATTGAG+TGG | 0.560241 | 6_1:-83968603 | Msa0895730:three_prime_UTR |
| ATTTCAACCTCGTCCTCAGT+TGG | 0.560819 | 6_1:+83969611 | None:intergenic |
| TTATAGTATGTTTGATATCG+CGG | 0.562895 | 6_1:-83968501 | Msa0895730:three_prime_UTR |
| TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6_1:+83974140 | None:intergenic |
| GGATTTATCTCAAATTCCCA+AGG | 0.569573 | 6_1:-83968541 | Msa0895730:three_prime_UTR |
| TTGCAGGATAGTGAATGAGT+TGG | 0.573505 | 6_1:-83968663 | Msa0895730:intron |
| CATTCAACCAACTGAGGACG+AGG | 0.575763 | 6_1:-83969439 | Msa0895730:CDS |
| AATCTCAGCTTAACATGGAA+GGG | 0.578379 | 6_1:-83971887 | Msa0895730:intron |
| GTCTAAATCTCAGCTTAACA+TGG | 0.578885 | 6_1:-83971892 | Msa0895730:intron |
| CATTGAACCAACTGAGGACG+AGG | 0.580949 | 6_1:-83969618 | Msa0895730:CDS |
| GGATTGAAACAGCGGACATG+AGG | 0.588385 | 6_1:-83968981 | Msa0895730:CDS |
| ACTAGTCGTCAAGATGATAG+TGG | 0.589965 | 6_1:-83971720 | Msa0895730:CDS |
| AAAGGAAAAGTGCAAGACAC+AGG | 0.590134 | 6_1:+83968579 | None:intergenic |
| CATCTTGACGACTAGTTGAA+GGG | 0.597221 | 6_1:+83971727 | None:intergenic |
| ATGCCGATGCCGATGCCGAA+AGG | 0.598152 | 6_1:-83969107 | Msa0895730:intron |
| CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_1:+83974149 | None:intergenic |
| GCTAATGATGTTGTTGCTGA+AGG | 0.601902 | 6_1:-83968910 | Msa0895730:intron |
| AGACGAACCAACTGAGGACG+AGG | 0.605497 | 6_1:-83969258 | Msa0895730:CDS |
| ACACTCAGCAGCAATGAACT+CGG | 0.610335 | 6_1:-83974179 | Msa0895730:exon |
| CAGCTCGAGTCTCATGTCCA+GGG | 0.614792 | 6_1:-83971624 | Msa0895730:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_1:+83971648 | None:intergenic |
| AAGGAAAAGTGCAAGACACA+GGG | 0.635168 | 6_1:+83968580 | None:intergenic |
| AAGGGCCATATGGGGCTGAG+TGG | 0.635636 | 6_1:-83971869 | Msa0895730:CDS |
| GTGTGCTTAAAGTCAGGACA+TGG | 0.647300 | 6_1:-83972781 | Msa0895730:CDS |
| GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_1:-83974157 | Msa0895730:CDS |
| CGACCCCATTGAACCAACTG+AGG | 0.649879 | 6_1:-83969624 | Msa0895730:CDS |
| ATATGGGGCTGAGTGGCAAG+AGG | 0.653218 | 6_1:-83971862 | Msa0895730:CDS |
| AGCTCGAGTCTCATGTCCAG+GGG | 0.653971 | 6_1:-83971623 | Msa0895730:CDS |
| TTATATCAGGATTGAAACAG+CGG | 0.654277 | 6_1:-83968989 | Msa0895730:intron |
| TAACATGGAAGGGCCATATG+GGG | 0.654689 | 6_1:-83971877 | Msa0895730:CDS |
| GTAATGTACAAACCCAACCA+AGG | 0.656995 | 6_1:+83971695 | None:intergenic |
| CGACCCAGACGAACCAACTG+AGG | 0.661783 | 6_1:-83969264 | Msa0895730:CDS |
| TATCGCCGCTTCGAAATCAA+CGG | 0.664718 | 6_1:-83973914 | Msa0895730:intron |
| TAATGTACAAACCCAACCAA+GGG | 0.669573 | 6_1:+83971696 | None:intergenic |
| TGAACCCATTCAACCAACTG+AGG | 0.670206 | 6_1:-83969445 | Msa0895730:CDS |
| CGTCCTCAGTTGGTTCAATG+GGG | 0.681095 | 6_1:+83969621 | None:intergenic |
| ATAAACTTTAGAAGGTGACG+TGG | 0.706293 | 6_1:+83970604 | None:intergenic |
| GGTTACCGTTGATTTCGAAG+CGG | 0.709677 | 6_1:+83973909 | None:intergenic |
| GATAATCGGGAAAAGAATCG+AGG | 0.710792 | 6_1:+83973933 | None:intergenic |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_1:+83971673 | None:intergenic |
| GAAGACAACATTGTTCACTG+GGG | 0.802732 | 6_1:-83971754 | Msa0895730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATAAAGTTAATG+AGG | - | chr6_1:83969237-83969256 | Msa0895730:intron | 10.0% |
| !!! | TTTTTAAATAAAGTTAATGA+GGG | - | chr6_1:83969238-83969257 | Msa0895730:intron | 10.0% |
| !! | TTAATATTTCAACATAATTA+TGG | - | chr6_1:83969690-83969709 | Msa0895730:intron | 10.0% |
| !! | TGAAATACAATTAATTAATA+AGG | + | chr6_1:83971543-83971562 | None:intergenic | 10.0% |
| !! | TATTAAAAAAGAAAAAAGTT+TGG | - | chr6_1:83972649-83972668 | Msa0895730:intron | 10.0% |
| !! | ATTAAAAAAGAAAAAAGTTT+GGG | - | chr6_1:83972650-83972669 | Msa0895730:intron | 10.0% |
| !!! | TAGTTTATTTTTATTTTAGT+CGG | - | chr6_1:83973442-83973461 | Msa0895730:intron | 10.0% |
| !! | TGATAGTATAAACAAAAATA+AGG | + | chr6_1:83970579-83970598 | None:intergenic | 15.0% |
| !! | TTGTTTATACTATCATAAAT+CGG | - | chr6_1:83970584-83970603 | Msa0895730:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | + | chr6_1:83970620-83970639 | None:intergenic | 15.0% |
| !!! | CAATTTATTGATTTATTTAC+AGG | - | chr6_1:83971197-83971216 | Msa0895730:CDS | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | - | chr6_1:83971732-83971751 | Msa0895730:CDS | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | - | chr6_1:83971815-83971834 | Msa0895730:CDS | 15.0% |
| !! | TATTATAGATAACATTCTAA+TGG | + | chr6_1:83972167-83972186 | None:intergenic | 15.0% |
| !! | TTAAAAAAGAAAAAAGTTTG+GGG | - | chr6_1:83972651-83972670 | Msa0895730:intron | 15.0% |
| !! | GAAATTAAAAAAAGCAATTA+AGG | - | chr6_1:83972680-83972699 | Msa0895730:intron | 15.0% |
| !! | AGATAAAAAATTAGAAACAA+AGG | + | chr6_1:83973567-83973586 | None:intergenic | 15.0% |
| !!! | AAGTTTGTTTATTGAATTAG+CGG | + | chr6_1:83969503-83969522 | None:intergenic | 20.0% |
| !! | ATTTGTTTATACTATCATGA+GGG | - | chr6_1:83970494-83970513 | Msa0895730:CDS | 20.0% |
| !! | TAGTATAAACAAAAATAAGG+CGG | + | chr6_1:83970576-83970595 | None:intergenic | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | + | chr6_1:83970621-83970640 | None:intergenic | 20.0% |
| !!! | CAATTTATTGATTTCTTTAC+AGG | - | chr6_1:83971263-83971282 | Msa0895730:intron | 20.0% |
| !!! | ATTTTTACACAAGTAAACTA+AGG | - | chr6_1:83971399-83971418 | Msa0895730:intron | 20.0% |
| !! | AGCAATAAAAAATTCAATGA+TGG | + | chr6_1:83971446-83971465 | None:intergenic | 20.0% |
| !! | GTAATATACTAGAAAAATCT+AGG | + | chr6_1:83971883-83971902 | None:intergenic | 20.0% |
| !! | ACGAAGACTAAAAATAAAAA+GGG | + | chr6_1:83971915-83971934 | None:intergenic | 20.0% |
| !! | AACGAAGACTAAAAATAAAA+AGG | + | chr6_1:83971916-83971935 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | + | chr6_1:83972026-83972045 | None:intergenic | 20.0% |
| !!! | AATGGAGATTTAAAATTAAC+TGG | + | chr6_1:83972236-83972255 | None:intergenic | 20.0% |
| !! | AAAAGCAATTAAGGAAATTA+AGG | - | chr6_1:83972689-83972708 | Msa0895730:intron | 20.0% |
| !!! | AAGGAAATTAAGGTATTTAA+TGG | - | chr6_1:83972699-83972718 | Msa0895730:intron | 20.0% |
| !! | ATAAAATCAAATATACTCAC+AGG | + | chr6_1:83973000-83973019 | None:intergenic | 20.0% |
| !!! | CTTCTTTTTTAAAACTTTGA+AGG | - | chr6_1:83973027-83973046 | Msa0895730:intron | 20.0% |
| !!! | GTTTCTTTCTAAAATTTTGA+AGG | - | chr6_1:83973205-83973224 | Msa0895730:intron | 20.0% |
| !! | ATAAAATCAAATATACTCAC+AGG | + | chr6_1:83973000-83973019 | None:intergenic | 20.0% |
| !!! | TTTTTGTAGTACTTTTTATC+AGG | - | chr6_1:83973510-83973529 | Msa0895730:intron | 20.0% |
| !!! | TTTTGTAGTACTTTTTATCA+GGG | - | chr6_1:83973511-83973530 | Msa0895730:intron | 20.0% |
| !!! | AACTTTTTGGTCATTTTTTA+TGG | - | chr6_1:83973957-83973976 | Msa0895730:CDS | 20.0% |
| !! | AAACAAAAAATTGTTTCCTT+GGG | + | chr6_1:83974062-83974081 | None:intergenic | 20.0% |
| !! | AAAACAAAAAATTGTTTCCT+TGG | + | chr6_1:83974063-83974082 | None:intergenic | 20.0% |
| ! | TTTGGATAAACAGCTTATTT+CGG | - | chr6_1:83968776-83968795 | Msa0895730:intron | 25.0% |
| !! | TGTTTTCATAAGTTATCACT+AGG | - | chr6_1:83968895-83968914 | Msa0895730:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAT+TGG | + | chr6_1:83969009-83969028 | None:intergenic | 25.0% |
| !! | GAATTTGAAGTGTTTGATAA+AGG | - | chr6_1:83969150-83969169 | Msa0895730:intron | 25.0% |
| ! | AATATAAATACAAGCTCAGA+CGG | - | chr6_1:83969286-83969305 | Msa0895730:CDS | 25.0% |
| ! | TATAAGTTTGTAGAACTGTT+TGG | + | chr6_1:83969386-83969405 | None:intergenic | 25.0% |
| ! | ATCAGACACAAATTTAGATT+AGG | + | chr6_1:83969549-83969568 | None:intergenic | 25.0% |
| !! | TTGGATGTAGCTTAAATTTT+GGG | + | chr6_1:83969595-83969614 | None:intergenic | 25.0% |
| ! | CTAACTACATTACTAATTAC+AGG | - | chr6_1:83969621-83969640 | Msa0895730:CDS | 25.0% |
| ! | TATATATTGTTTAACAGGAG+AGG | + | chr6_1:83969840-83969859 | None:intergenic | 25.0% |
| ! | CTCTGTATATATTGTTTAAC+AGG | + | chr6_1:83969845-83969864 | None:intergenic | 25.0% |
| ! | ATATATACAGAGACTTCTTA+AGG | - | chr6_1:83969853-83969872 | Msa0895730:intron | 25.0% |
| !! | ACAATTATACTTGTTGAGTA+TGG | - | chr6_1:83969962-83969981 | Msa0895730:intron | 25.0% |
| ! | TAAATAAACGCAGAAAAGAA+CGG | + | chr6_1:83970294-83970313 | None:intergenic | 25.0% |
| ! | TAGGACAATCATGAATAAAA+GGG | + | chr6_1:83970380-83970399 | None:intergenic | 25.0% |
| ! | ATAGGACAATCATGAATAAA+AGG | + | chr6_1:83970381-83970400 | None:intergenic | 25.0% |
| ! | TTATTCATGATTGTCCTATT+TGG | - | chr6_1:83970382-83970401 | Msa0895730:intron | 25.0% |
| !! | TTACAATGAAGATGCATTTT+TGG | + | chr6_1:83970421-83970440 | None:intergenic | 25.0% |
| ! | CATTTGTTTATACTATCATG+AGG | - | chr6_1:83970493-83970512 | Msa0895730:CDS | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | - | chr6_1:83970644-83970663 | Msa0895730:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | - | chr6_1:83970645-83970664 | Msa0895730:intron | 25.0% |
| !! | ACAAATATATAGAGTGCTTT+GGG | + | chr6_1:83970780-83970799 | None:intergenic | 25.0% |
| !! | AAAACAATTAACCACCTTTT+GGG | + | chr6_1:83971030-83971049 | None:intergenic | 25.0% |
| !! | AAAAACAATTAACCACCTTT+TGG | + | chr6_1:83971031-83971050 | None:intergenic | 25.0% |
| ! | GTTTAATGACACATCTAATA+TGG | - | chr6_1:83971289-83971308 | Msa0895730:intron | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | - | chr6_1:83971481-83971500 | Msa0895730:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | - | chr6_1:83971482-83971501 | Msa0895730:intron | 25.0% |
| ! | TAACAATGATTGACATATTG+AGG | + | chr6_1:83971597-83971616 | None:intergenic | 25.0% |
| ! | GAATTATGAAAGCAGAAAAT+AGG | + | chr6_1:83971805-83971824 | None:intergenic | 25.0% |
| ! | TAATTAGGATGATATCTTGA+TGG | + | chr6_1:83971857-83971876 | None:intergenic | 25.0% |
| ! | GAAAAATCTAGGAAGTAATT+AGG | + | chr6_1:83971872-83971891 | None:intergenic | 25.0% |
| ! | AGACTAAAAATAAAAAGGGA+GGG | + | chr6_1:83971911-83971930 | None:intergenic | 25.0% |
| ! | AAGACTAAAAATAAAAAGGG+AGG | + | chr6_1:83971912-83971931 | None:intergenic | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | + | chr6_1:83972022-83972041 | None:intergenic | 25.0% |
| !!! | TGAAGCTAAAACTATTTTTG+AGG | - | chr6_1:83972125-83972144 | Msa0895730:intron | 25.0% |
| !!! | AAGATCCATAAGTATTGATA+AGG | + | chr6_1:83972299-83972318 | None:intergenic | 25.0% |
| ! | TTCCTATCAAAATTTATACC+TGG | - | chr6_1:83972821-83972840 | Msa0895730:intron | 25.0% |
| ! | ATAAAATCAACTATACTCAC+AGG | + | chr6_1:83973179-83973198 | None:intergenic | 25.0% |
| ! | AAAAATCAATGCTAACCTTT+CGG | + | chr6_1:83973495-83973514 | None:intergenic | 25.0% |
| !!! | TATCTGTTGATTCTTATATC+AGG | - | chr6_1:83973582-83973601 | Msa0895730:intron | 25.0% |
| ! | TTATAGTATGTTTGATATCG+CGG | - | chr6_1:83974083-83974102 | Msa0895730:intron | 25.0% |
| ! | AGTGAATGAAGAAAGTTTTG+AGG | + | chr6_1:83968526-83968545 | None:intergenic | 30.0% |
| GCATTTAACAAACTGAAAAG+CGG | + | chr6_1:83968699-83968718 | None:intergenic | 30.0% | |
| TAGTGTTCGGTAAAAAATAG+TGG | - | chr6_1:83969056-83969075 | Msa0895730:intron | 30.0% | |
| ! | TAAATTTGTTTGTCCGCTAA+TGG | + | chr6_1:83969128-83969147 | None:intergenic | 30.0% |
| CTAAAAAAACGCTGTAAGTT+TGG | - | chr6_1:83969324-83969343 | Msa0895730:intron | 30.0% | |
| TTTGTAGAACTGTTTGGTAA+CGG | + | chr6_1:83969380-83969399 | None:intergenic | 30.0% | |
| ! | TTCAAATTGCTAGCTTATAG+TGG | + | chr6_1:83969422-83969441 | None:intergenic | 30.0% |
| ! | TGGATGTAGCTTAAATTTTG+GGG | + | chr6_1:83969594-83969613 | None:intergenic | 30.0% |
| ! | GTTGGATGTAGCTTAAATTT+TGG | + | chr6_1:83969596-83969615 | None:intergenic | 30.0% |
| GTAATGTAGTTAGAACAAGT+TGG | + | chr6_1:83969614-83969633 | None:intergenic | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | + | chr6_1:83969775-83969794 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | - | chr6_1:83969773-83969792 | Msa0895730:intron | 30.0% |
| CAGTTAACTCTAGTATTGTT+TGG | + | chr6_1:83969917-83969936 | None:intergenic | 30.0% | |
| TTTATCTGTATGTGTAGAGT+TGG | - | chr6_1:83970310-83970329 | Msa0895730:intron | 30.0% | |
| TTATCTGTATGTGTAGAGTT+GGG | - | chr6_1:83970311-83970330 | Msa0895730:intron | 30.0% | |
| TTCAATGAATAAGCTAACAC+AGG | + | chr6_1:83970643-83970662 | None:intergenic | 30.0% | |
| ! | CACAAATATATAGAGTGCTT+TGG | + | chr6_1:83970781-83970800 | None:intergenic | 30.0% |
| ACTCTATATATTTGTGCATG+AGG | - | chr6_1:83970785-83970804 | Msa0895730:intron | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | + | chr6_1:83970939-83970958 | None:intergenic | 30.0% | |
| TGTAAAAATTCATAGCTGGT+AGG | + | chr6_1:83971388-83971407 | None:intergenic | 30.0% | |
| CTTGTGTAAAAATTCATAGC+TGG | + | chr6_1:83971392-83971411 | None:intergenic | 30.0% | |
| AAGGCTTATACAAACAGTTA+GGG | + | chr6_1:83971524-83971543 | None:intergenic | 30.0% | |
| TAAGGCTTATACAAACAGTT+AGG | + | chr6_1:83971525-83971544 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTTGC+AGG | - | chr6_1:83971743-83971762 | Msa0895730:CDS | 30.0% | |
| GACTAAAAATAAAAAGGGAG+GGG | + | chr6_1:83971910-83971929 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | - | chr6_1:83971923-83971942 | Msa0895730:intron | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | - | chr6_1:83971987-83972006 | Msa0895730:intron | 30.0% |
| ACCATTGGATAAACTTTAGA+AGG | + | chr6_1:83971991-83972010 | None:intergenic | 30.0% | |
| !! | TAACACTTATGATTTTGGAG+GGG | + | chr6_1:83972021-83972040 | None:intergenic | 30.0% |
| ! | CATAACACTTATGATTTTGG+AGG | + | chr6_1:83972023-83972042 | None:intergenic | 30.0% |
| TTAATGCATCCAAGATATCA+TGG | + | chr6_1:83972200-83972219 | None:intergenic | 30.0% | |
| ATCCAACAGTTATAGATGAA+TGG | + | chr6_1:83972254-83972273 | None:intergenic | 30.0% | |
| !! | TCCATAAGTATTGATAAGGA+CGG | + | chr6_1:83972295-83972314 | None:intergenic | 30.0% |
| TAATCATCAGAGAGAAATTG+CGG | + | chr6_1:83972361-83972380 | None:intergenic | 30.0% | |
| CACATTGGACAAGATATAAT+TGG | + | chr6_1:83972389-83972408 | None:intergenic | 30.0% | |
| !!! | CATTTTTCTTCTGCTTTTTG+CGG | - | chr6_1:83972440-83972459 | Msa0895730:intron | 30.0% |
| !!! | ATTTTTCTTCTGCTTTTTGC+GGG | - | chr6_1:83972441-83972460 | Msa0895730:intron | 30.0% |
| TGTTATACACAACTGTTTGT+AGG | - | chr6_1:83972500-83972519 | Msa0895730:intron | 30.0% | |
| TAGACTTAAATTTCGCATAG+AGG | + | chr6_1:83972747-83972766 | None:intergenic | 30.0% | |
| GTTTCTTGTGTTAGATAAGA+TGG | - | chr6_1:83972786-83972805 | Msa0895730:CDS | 30.0% | |
| !! | CACCAGGTATAAATTTTGAT+AGG | + | chr6_1:83972826-83972845 | None:intergenic | 30.0% |
| CTATCAAAATTTATACCTGG+TGG | - | chr6_1:83972824-83972843 | Msa0895730:intron | 30.0% | |
| ! | TCTATCTCGACTTTTAAACT+TGG | - | chr6_1:83972850-83972869 | Msa0895730:intron | 30.0% |
| !! | AGTACTTTTTATCAGGGTAT+AGG | - | chr6_1:83973517-83973536 | Msa0895730:intron | 30.0% |
| TTATATCAGGATTGAAACAG+CGG | - | chr6_1:83973595-83973614 | Msa0895730:intron | 30.0% | |
| TTAGCCAATAGGATGTATTT+CGG | - | chr6_1:83973629-83973648 | Msa0895730:intron | 30.0% | |
| AATTCCGAAATACATCCTAT+TGG | + | chr6_1:83973636-83973655 | None:intergenic | 30.0% | |
| ! | TTATGTCCTTCACTTTGTTT+AGG | - | chr6_1:83973705-83973724 | Msa0895730:intron | 30.0% |
| !! | TAAACGTGTTGATGTTTTAC+AGG | + | chr6_1:83973771-83973790 | None:intergenic | 30.0% |
| !!! | AAAACAGGAGAGGTTTTATT+GGG | + | chr6_1:83973899-83973918 | None:intergenic | 30.0% |
| ! | AGAAAGAATGCTCAACTTTT+TGG | - | chr6_1:83973944-83973963 | Msa0895730:CDS | 30.0% |
| ! | TCCTTTACATCTGGTTATTT+TGG | - | chr6_1:83974022-83974041 | Msa0895730:intron | 30.0% |
| TCCAAAATAACCAGATGTAA+AGG | + | chr6_1:83974026-83974045 | None:intergenic | 30.0% | |
| TGCTTTGATGAGTTGTTCAT+TGG | + | chr6_1:83968611-83968630 | None:intergenic | 35.0% | |
| CAAAGCAGCTTATAGCATAA+AGG | - | chr6_1:83968624-83968643 | Msa0895730:three_prime_UTR | 35.0% | |
| TAAGCTGTTTATCCAAACAG+AGG | + | chr6_1:83968773-83968792 | None:intergenic | 35.0% | |
| GATAAACAGCTTATTTCGGA+TGG | - | chr6_1:83968780-83968799 | Msa0895730:intron | 35.0% | |
| AGGAGCTTATGAAAATAAGC+TGG | - | chr6_1:83968915-83968934 | Msa0895730:exon | 35.0% | |
| TCAAATAAGCTAATCCAGAC+AGG | - | chr6_1:83969019-83969038 | Msa0895730:intron | 35.0% | |
| CAAATAAGCTAATCCAGACA+GGG | - | chr6_1:83969020-83969039 | Msa0895730:intron | 35.0% | |
| !!! | CCTAAGGTTTTGTTAGTGTT+CGG | - | chr6_1:83969043-83969062 | Msa0895730:intron | 35.0% |
| !! | AAATAGTGGATAGCTGAAAG+CGG | - | chr6_1:83969070-83969089 | Msa0895730:intron | 35.0% |
| ! | AGTTAGACACTCCTCATTTT+AGG | + | chr6_1:83969459-83969478 | None:intergenic | 35.0% |
| TTGAGTATGGCTCAAATTCA+CGG | - | chr6_1:83969975-83969994 | Msa0895730:intron | 35.0% | |
| ! | GTTTTCCAATAATGCAATGC+TGG | + | chr6_1:83970216-83970235 | None:intergenic | 35.0% |
| !!! | CGTTTTGTTGTTTGAGATGT+AGG | - | chr6_1:83970245-83970264 | Msa0895730:intron | 35.0% |
| AAAGAACGGACAATGGAATT+TGG | + | chr6_1:83970280-83970299 | None:intergenic | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | - | chr6_1:83970648-83970667 | Msa0895730:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | - | chr6_1:83970649-83970668 | Msa0895730:intron | 35.0% | |
| GTCTAAATCTCAGCTTAACA+TGG | - | chr6_1:83970692-83970711 | Msa0895730:intron | 35.0% | |
| AAATCTCAGCTTAACATGGA+AGG | - | chr6_1:83970696-83970715 | Msa0895730:intron | 35.0% | |
| AATCTCAGCTTAACATGGAA+GGG | - | chr6_1:83970697-83970716 | Msa0895730:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | - | chr6_1:83970749-83970768 | Msa0895730:intron | 35.0% | |
| AGAAGACAACATTGTTCACT+GGG | - | chr6_1:83970829-83970848 | Msa0895730:intron | 35.0% | |
| TAATGTACAAACCCAACCAA+GGG | + | chr6_1:83970891-83970910 | None:intergenic | 35.0% | |
| !!! | TGTACATTACCGCTTTGTTT+TGG | - | chr6_1:83970902-83970921 | Msa0895730:intron | 35.0% |
| TATTGAGCTTATTGCCCAAA+AGG | - | chr6_1:83971013-83971032 | Msa0895730:intron | 35.0% | |
| GAATTATTGCTATGTTGCGA+AGG | - | chr6_1:83971083-83971102 | Msa0895730:intron | 35.0% | |
| ACATTTCTTGTAGAACTGCA+TGG | - | chr6_1:83971331-83971350 | Msa0895730:intron | 35.0% | |
| CATTTCTTGTAGAACTGCAT+GGG | - | chr6_1:83971332-83971351 | Msa0895730:intron | 35.0% | |
| ! | TGGTAGGTTCAACTTTTGAA+CGG | + | chr6_1:83971372-83971391 | None:intergenic | 35.0% |
| ATTTCAACCTTAGCATCACA+TGG | - | chr6_1:83971557-83971576 | Msa0895730:intron | 35.0% | |
| CAAATAACCATGTGATGCTA+AGG | + | chr6_1:83971567-83971586 | None:intergenic | 35.0% | |
| ! | GATATCTTGATGGATAACGT+GGG | + | chr6_1:83971847-83971866 | None:intergenic | 35.0% |
| ! | TGATATCTTGATGGATAACG+TGG | + | chr6_1:83971848-83971867 | None:intergenic | 35.0% |
| ! | ATAAACTTTAGAAGGTGACG+TGG | + | chr6_1:83971983-83972002 | None:intergenic | 35.0% |
| !! | AACACTTATGATTTTGGAGG+GGG | + | chr6_1:83972020-83972039 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | - | chr6_1:83972065-83972084 | Msa0895730:intron | 35.0% | |
| CAACCAAAACCATGATATCT+TGG | - | chr6_1:83972188-83972207 | Msa0895730:intron | 35.0% | |
| ! | CATCCAAGATATCATGGTTT+TGG | + | chr6_1:83972194-83972213 | None:intergenic | 35.0% |
| CTCCATTCATCTATAACTGT+TGG | - | chr6_1:83972249-83972268 | Msa0895730:intron | 35.0% | |
| ACCGTCCTTATCAATACTTA+TGG | - | chr6_1:83972291-83972310 | Msa0895730:intron | 35.0% | |
| GAAAGATAGTAGAGTTTGCA+AGG | + | chr6_1:83972324-83972343 | None:intergenic | 35.0% | |
| AACCTTCATCATGTTCACAT+TGG | + | chr6_1:83972404-83972423 | None:intergenic | 35.0% | |
| CTATTTCAGTTAAACTCCTC+TGG | - | chr6_1:83972476-83972495 | Msa0895730:intron | 35.0% | |
| AAAACAGTTACACCACAATC+TGG | + | chr6_1:83972608-83972627 | None:intergenic | 35.0% | |
| GTCTATCATATCTACAGACA+AGG | - | chr6_1:83972762-83972781 | Msa0895730:CDS | 35.0% | |
| CAATTTACACAACCTCTCAT+AGG | - | chr6_1:83972906-83972925 | Msa0895730:intron | 35.0% | |
| ! | CAATTTTCACAACCTCTCAT+AGG | - | chr6_1:83973263-83973282 | Msa0895730:intron | 35.0% |
| TTTATCAGGGTATAGGATTG+AGG | - | chr6_1:83973524-83973543 | Msa0895730:intron | 35.0% | |
| TTATCAGGGTATAGGATTGA+GGG | - | chr6_1:83973525-83973544 | Msa0895730:intron | 35.0% | |
| AACTGATGAATGAGAGATAG+CGG | + | chr6_1:83973873-83973892 | None:intergenic | 35.0% | |
| !! | CAAAACAGGAGAGGTTTTAT+TGG | + | chr6_1:83973900-83973919 | None:intergenic | 35.0% |
| ! | TTGCACTTTTCCTTTACATC+TGG | - | chr6_1:83974013-83974032 | Msa0895730:intron | 35.0% |
| GGATTTATCTCAAATTCCCA+AGG | - | chr6_1:83974043-83974062 | Msa0895730:intron | 35.0% | |
| CTTCTCATGTTAACTGCATT+GGG | - | chr6_1:83974156-83974175 | Msa0895730:CDS | 35.0% | |
| TAATCTTCTCTCTGTTGCGA+CGG | + | chr6_1:83968476-83968495 | None:intergenic | 40.0% | |
| GATAATCGGGAAAAGAATCG+AGG | + | chr6_1:83968654-83968673 | None:intergenic | 40.0% | |
| TTACGCATTTAGCCTCTGTT+TGG | - | chr6_1:83968758-83968777 | Msa0895730:intron | 40.0% | |
| CCGAACACTAACAAAACCTT+AGG | + | chr6_1:83969046-83969065 | None:intergenic | 40.0% | |
| GAAAGCGGATGAACTTGTAT+CGG | - | chr6_1:83969085-83969104 | Msa0895730:intron | 40.0% | |
| !! | GCTATGTTGATAGCCATTAG+CGG | - | chr6_1:83969112-83969131 | Msa0895730:CDS | 40.0% |
| ! | TCCTCATTTTAGGCTCTGTT+TGG | + | chr6_1:83969449-83969468 | None:intergenic | 40.0% |
| CACTGATAGACCTGGAAATA+AGG | + | chr6_1:83969786-83969805 | None:intergenic | 40.0% | |
| TTTAAGCACACTGATAGACC+TGG | + | chr6_1:83969794-83969813 | None:intergenic | 40.0% | |
| CTATCAGTGTGCTTAAAGTC+AGG | - | chr6_1:83969797-83969816 | Msa0895730:intron | 40.0% | |
| GTTCTCTAAGTGCAATGTAG+TGG | - | chr6_1:83970030-83970049 | Msa0895730:intron | 40.0% | |
| TTCCTAGGGTTATGAGACTA+CGG | - | chr6_1:83970084-83970103 | Msa0895730:intron | 40.0% | |
| TTATGAGACTACGGTCTATG+AGG | - | chr6_1:83970093-83970112 | Msa0895730:intron | 40.0% | |
| TATGAGACTACGGTCTATGA+GGG | - | chr6_1:83970094-83970113 | Msa0895730:intron | 40.0% | |
| TAACCCCTAAACTGTACCAT+GGG | + | chr6_1:83970142-83970161 | None:intergenic | 40.0% | |
| TTAACCCCTAAACTGTACCA+TGG | + | chr6_1:83970143-83970162 | None:intergenic | 40.0% | |
| TAATGCAATGCTGGAAGCTA+CGG | + | chr6_1:83970207-83970226 | None:intergenic | 40.0% | |
| AGCTTCCAGCATTGCATTAT+TGG | - | chr6_1:83970208-83970227 | Msa0895730:intron | 40.0% | |
| AGATATCTCTCGTGACTCAT+GGG | + | chr6_1:83970348-83970367 | None:intergenic | 40.0% | |
| TAGATATCTCTCGTGACTCA+TGG | + | chr6_1:83970349-83970368 | None:intergenic | 40.0% | |
| GAACAGAGCACAAACCAAAT+AGG | + | chr6_1:83970399-83970418 | None:intergenic | 40.0% | |
| TTAACATGGAAGGGCCATAT+GGG | - | chr6_1:83970706-83970725 | Msa0895730:intron | 40.0% | |
| GAGAAGACAACATTGTTCAC+TGG | - | chr6_1:83970828-83970847 | Msa0895730:intron | 40.0% | |
| GAAGACAACATTGTTCACTG+GGG | - | chr6_1:83970830-83970849 | Msa0895730:intron | 40.0% | |
| ! | CATCTTGACGACTAGTTGAA+GGG | + | chr6_1:83970860-83970879 | None:intergenic | 40.0% |
| ! | TCATCTTGACGACTAGTTGA+AGG | + | chr6_1:83970861-83970880 | None:intergenic | 40.0% |
| ACTAGTCGTCAAGATGATAG+TGG | - | chr6_1:83970864-83970883 | Msa0895730:intron | 40.0% | |
| GTAATGTACAAACCCAACCA+AGG | + | chr6_1:83970892-83970911 | None:intergenic | 40.0% | |
| CCTCTTCTTCCAAAACAAAG+CGG | + | chr6_1:83970914-83970933 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | - | chr6_1:83970917-83970936 | Msa0895730:intron | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | - | chr6_1:83970986-83971005 | Msa0895730:intron | 40.0% | |
| TCAATGATGGCATACATCTC+TGG | + | chr6_1:83971433-83971452 | None:intergenic | 40.0% | |
| !! | ACACTTATGATTTTGGAGGG+GGG | + | chr6_1:83972019-83972038 | None:intergenic | 40.0% |
| CATTCTAATGGTGCAGTAAG+TGG | + | chr6_1:83972155-83972174 | None:intergenic | 40.0% | |
| GTCCAATGTGAACATGATGA+AGG | - | chr6_1:83972399-83972418 | Msa0895730:intron | 40.0% | |
| CAGTTGTGTATAACAACCAG+AGG | + | chr6_1:83972495-83972514 | None:intergenic | 40.0% | |
| ATAGATATCGCACCAGATTG+TGG | - | chr6_1:83972593-83972612 | Msa0895730:intron | 40.0% | |
| AGAAAAAAGTTTGGGGACTC+AGG | - | chr6_1:83972658-83972677 | Msa0895730:intron | 40.0% | |
| ! | CAATTTTCACAACCTCTCGT+AGG | - | chr6_1:83973085-83973104 | Msa0895730:intron | 40.0% |
| ACATGAGGAAGTTAGCCAAT+AGG | - | chr6_1:83973618-83973637 | Msa0895730:intron | 40.0% | |
| TTAGCTTAAGAGCTCTCTTC+AGG | + | chr6_1:83973659-83973678 | None:intergenic | 40.0% | |
| GCTAATGATGTTGTTGCTGA+AGG | - | chr6_1:83973674-83973693 | Msa0895730:intron | 40.0% | |
| ! | AGAGATAGCGGTGAAATTTG+CGG | + | chr6_1:83973861-83973880 | None:intergenic | 40.0% |
| CACTATCCTGCAAACAAAAC+AGG | + | chr6_1:83973914-83973933 | None:intergenic | 40.0% | |
| TTGCAGGATAGTGAATGAGT+TGG | - | chr6_1:83973921-83973940 | Msa0895730:CDS | 40.0% | |
| TCCTTCATCGCATTATTGAG+TGG | - | chr6_1:83973981-83974000 | Msa0895730:CDS | 40.0% | |
| ! | AAGGAAAAGTGCAAGACACA+GGG | + | chr6_1:83974007-83974026 | None:intergenic | 40.0% |
| ! | AAAGGAAAAGTGCAAGACAC+AGG | + | chr6_1:83974008-83974027 | None:intergenic | 40.0% |
| GCTTCTCATGTTAACTGCAT+TGG | - | chr6_1:83974155-83974174 | Msa0895730:CDS | 40.0% | |
| ACACTCAGCAGCAATGAACT+CGG | - | chr6_1:83968405-83968424 | Msa0895730:three_prime_UTR | 45.0% | |
| !! | TGTGAGTTGCATTGGTTCCA+CGG | + | chr6_1:83968447-83968466 | None:intergenic | 45.0% |
| ! | ACAAAACCGTTCCGTTTTGC+AGG | - | chr6_1:83968567-83968586 | Msa0895730:three_prime_UTR | 45.0% |
| CTTTGCGAGTACCTGCAAAA+CGG | + | chr6_1:83968581-83968600 | None:intergenic | 45.0% | |
| ATTTCGAAGCGGCGATAATC+GGG | + | chr6_1:83968667-83968686 | None:intergenic | 45.0% | |
| GATTTCGAAGCGGCGATAAT+CGG | + | chr6_1:83968668-83968687 | None:intergenic | 45.0% | |
| TATCGCCGCTTCGAAATCAA+CGG | - | chr6_1:83968670-83968689 | Msa0895730:intron | 45.0% | |
| !! | GGTTACCGTTGATTTCGAAG+CGG | + | chr6_1:83968678-83968697 | None:intergenic | 45.0% |
| ATACAAGCTCAGACGGTACT+TGG | - | chr6_1:83969293-83969312 | Msa0895730:CDS | 45.0% | |
| GCCAAACAGAGCCTAAAATG+AGG | - | chr6_1:83969445-83969464 | Msa0895730:CDS | 45.0% | |
| GTGTGCTTAAAGTCAGGACA+TGG | - | chr6_1:83969803-83969822 | Msa0895730:intron | 45.0% | |
| GGCTCAAATTCACGGATAAG+TGG | - | chr6_1:83969983-83970002 | Msa0895730:intron | 45.0% | |
| ACTCACTATGCTCTAGTGTC+TGG | + | chr6_1:83970009-83970028 | None:intergenic | 45.0% | |
| !! | GTGCAATGTAGTGGATTGAG+AGG | - | chr6_1:83970039-83970058 | Msa0895730:intron | 45.0% |
| TAGGAATGAGCCAAGCTCAA+AGG | + | chr6_1:83970070-83970089 | None:intergenic | 45.0% | |
| TTTGAGCTTGGCTCATTCCT+AGG | - | chr6_1:83970069-83970088 | Msa0895730:intron | 45.0% | |
| TTGAGCTTGGCTCATTCCTA+GGG | - | chr6_1:83970070-83970089 | Msa0895730:intron | 45.0% | |
| ! | TCTATGAGGGTTGAGAGTGT+GGG | - | chr6_1:83970107-83970126 | Msa0895730:intron | 45.0% |
| AACCCCTAAACTGTACCATG+GGG | + | chr6_1:83970141-83970160 | None:intergenic | 45.0% | |
| ! | GTTTGAGATGTAGGCACGAT+TGG | - | chr6_1:83970254-83970273 | Msa0895730:intron | 45.0% |
| ACGCAGAAAAGAACGGACAA+TGG | + | chr6_1:83970287-83970306 | None:intergenic | 45.0% | |
| AAAACCTTGCCATTGTGCCA+AGG | + | chr6_1:83970524-83970543 | None:intergenic | 45.0% | |
| ! | GTTTTTGCCTTGAAACCTCG+TGG | - | chr6_1:83970539-83970558 | Msa0895730:intron | 45.0% |
| CTTAACATGGAAGGGCCATA+TGG | - | chr6_1:83970705-83970724 | Msa0895730:intron | 45.0% | |
| TAACATGGAAGGGCCATATG+GGG | - | chr6_1:83970707-83970726 | Msa0895730:intron | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | - | chr6_1:83970731-83970750 | Msa0895730:intron | 45.0% | |
| !! | TCAAGATGATAGTGGTCCCT+TGG | - | chr6_1:83970872-83970891 | Msa0895730:intron | 45.0% |
| !! | ATGATAGTGGTCCCTTGGTT+GGG | - | chr6_1:83970877-83970896 | Msa0895730:intron | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | - | chr6_1:83970911-83970930 | Msa0895730:intron | 45.0% |
| TGAGCTTATTGCCCAAAAGG+TGG | - | chr6_1:83971016-83971035 | Msa0895730:intron | 45.0% | |
| AAGGACACAGCTTGTAGTCT+AGG | - | chr6_1:83971102-83971121 | Msa0895730:intron | 45.0% | |
| AAGGACGGTCAACAAGAATG+AGG | + | chr6_1:83972280-83972299 | None:intergenic | 45.0% | |
| AGTCGAGATAGAATTCCACC+AGG | + | chr6_1:83972842-83972861 | None:intergenic | 45.0% | |
| ACACAACCTCTCATAGGACA+CGG | - | chr6_1:83972912-83972931 | Msa0895730:intron | 45.0% | |
| ! | TCGTCCTCAGTTGGTTCAAT+GGG | + | chr6_1:83972967-83972986 | None:intergenic | 45.0% |
| ATTTCAACCTCGTCCTCAGT+TGG | + | chr6_1:83972976-83972995 | None:intergenic | 45.0% | |
| TGAACCCATTCAACCAACTG+AGG | - | chr6_1:83973139-83973158 | Msa0895730:intron | 45.0% | |
| TCGTCCTCAGTTGGTTGAAT+GGG | + | chr6_1:83973146-83973165 | None:intergenic | 45.0% | |
| TCACAACCTCTCATAGGACA+CGG | - | chr6_1:83973269-83973288 | Msa0895730:intron | 45.0% | |
| CAATGCTAACCTTTCGGCAT+CGG | + | chr6_1:83973489-83973508 | None:intergenic | 45.0% | |
| GCTGTGCCTAAACAAAGTGA+AGG | + | chr6_1:83973714-83973733 | None:intergenic | 45.0% | |
| !!! | ACCTCTCCTGTTTTGTTTGC+AGG | - | chr6_1:83973905-83973924 | Msa0895730:intron | 45.0% |
| TCCTGCAAACAAAACAGGAG+AGG | + | chr6_1:83973909-83973928 | None:intergenic | 45.0% | |
| GCCACTCAATAATGCGATGA+AGG | + | chr6_1:83973985-83974004 | None:intergenic | 45.0% | |
| !!! | CAGTTTTAGCTCGAACTTGC+AGG | + | chr6_1:83974126-83974145 | None:intergenic | 45.0% |
| GAGTTCATTGCTGCTGAGTG+TGG | + | chr6_1:83968406-83968425 | None:intergenic | 50.0% | |
| GGCGTTGTTGTGAGTTGCAT+TGG | + | chr6_1:83968455-83968474 | None:intergenic | 50.0% | |
| CGAGTACCTGCAAAACGGAA+CGG | + | chr6_1:83968576-83968595 | None:intergenic | 50.0% | |
| ACAAAACCTTAGGCCCTGTC+TGG | + | chr6_1:83969036-83969055 | None:intergenic | 50.0% | |
| ATGAGCCAAGCTCAAAGGCA+TGG | + | chr6_1:83970065-83970084 | None:intergenic | 50.0% | |
| GACCGTAGTCTCATAACCCT+AGG | + | chr6_1:83970089-83970108 | None:intergenic | 50.0% | |
| GTCTATGAGGGTTGAGAGTG+TGG | - | chr6_1:83970106-83970125 | Msa0895730:intron | 50.0% | |
| ! | CTATGAGGGTTGAGAGTGTG+GGG | - | chr6_1:83970108-83970127 | Msa0895730:intron | 50.0% |
| ! | TATGAGGGTTGAGAGTGTGG+GGG | - | chr6_1:83970109-83970128 | Msa0895730:intron | 50.0% |
| AAGCCCCCATGGTACAGTTT+AGG | - | chr6_1:83970134-83970153 | Msa0895730:intron | 50.0% | |
| AGCCCCCATGGTACAGTTTA+GGG | - | chr6_1:83970135-83970154 | Msa0895730:intron | 50.0% | |
| ACCCCTAAACTGTACCATGG+GGG | + | chr6_1:83970140-83970159 | None:intergenic | 50.0% | |
| ACTATCATGAGGGCAAGCCT+TGG | - | chr6_1:83970504-83970523 | Msa0895730:intron | 50.0% | |
| GTGTGATCCACGAGGTTTCA+AGG | + | chr6_1:83970549-83970568 | None:intergenic | 50.0% | |
| !! | GATGATAGTGGTCCCTTGGT+TGG | - | chr6_1:83970876-83970895 | Msa0895730:intron | 50.0% |
| TCATGTCCAGGGGAAAGGAT+TGG | - | chr6_1:83970971-83970990 | Msa0895730:intron | 50.0% | |
| CATGTCCAGGGGAAAGGATT+GGG | - | chr6_1:83970972-83970991 | Msa0895730:intron | 50.0% | |
| !!! | CTTCTGCTTTTTGCGGGATG+AGG | - | chr6_1:83972447-83972466 | Msa0895730:intron | 50.0% |
| ! | CTCAGTTGGTTCAATGGGGT+CGG | + | chr6_1:83972962-83972981 | None:intergenic | 50.0% |
| ! | CGTCCTCAGTTGGTTCAATG+GGG | + | chr6_1:83972966-83972985 | None:intergenic | 50.0% |
| ! | CTCGTCCTCAGTTGGTTCAA+TGG | + | chr6_1:83972968-83972987 | None:intergenic | 50.0% |
| CATTGAACCAACTGAGGACG+AGG | - | chr6_1:83972966-83972985 | Msa0895730:intron | 50.0% | |
| TCACAACCTCTCGTAGGACA+TGG | - | chr6_1:83973091-83973110 | Msa0895730:intron | 50.0% | |
| ! | GTTGGTTGAATGGGTTCAGC+AGG | + | chr6_1:83973137-83973156 | None:intergenic | 50.0% |
| CTCGTCCTCAGTTGGTTGAA+TGG | + | chr6_1:83973147-83973166 | None:intergenic | 50.0% | |
| CATTCAACCAACTGAGGACG+AGG | - | chr6_1:83973145-83973164 | Msa0895730:intron | 50.0% | |
| ATTTCAGCCTCGTCCTCAGT+TGG | + | chr6_1:83973155-83973174 | None:intergenic | 50.0% | |
| ATTTCAGCCTCGTCCTCAGT+TGG | + | chr6_1:83973155-83973174 | None:intergenic | 50.0% | |
| !! | TAACCTTTCGGCATCGGCAT+CGG | + | chr6_1:83973483-83973502 | None:intergenic | 50.0% |
| GGATTGAAACAGCGGACATG+AGG | - | chr6_1:83973603-83973622 | Msa0895730:intron | 50.0% | |
| AGCTCGAACTTGCAGGAGTT+AGG | + | chr6_1:83974119-83974138 | None:intergenic | 50.0% | |
| !! | CATTGGTTCCACGGTCACGT+TGG | + | chr6_1:83968438-83968457 | None:intergenic | 55.0% |
| GCTAATCCAGACAGGGCCTA+AGG | - | chr6_1:83969027-83969046 | Msa0895730:intron | 55.0% | |
| AGAGGCCATGCCTTTGAGCT+TGG | - | chr6_1:83970057-83970076 | Msa0895730:intron | 55.0% | |
| GCCCCCATGGTACAGTTTAG+GGG | - | chr6_1:83970136-83970155 | Msa0895730:intron | 55.0% | |
| CAAGCCTTGGCACAATGGCA+AGG | - | chr6_1:83970517-83970536 | Msa0895730:intron | 55.0% | |
| TCTTGCCACTCAGCCCCATA+TGG | + | chr6_1:83970723-83970742 | None:intergenic | 55.0% | |
| ATATGGGGCTGAGTGGCAAG+AGG | - | chr6_1:83970722-83970741 | Msa0895730:intron | 55.0% | |
| ACAGCTCGAGTCTCATGTCC+AGG | - | chr6_1:83970959-83970978 | Msa0895730:intron | 55.0% | |
| CAGCTCGAGTCTCATGTCCA+GGG | - | chr6_1:83970960-83970979 | Msa0895730:intron | 55.0% | |
| AGCTCGAGTCTCATGTCCAG+GGG | - | chr6_1:83970961-83970980 | Msa0895730:intron | 55.0% | |
| GAGTCTCATGTCCAGGGGAA+AGG | - | chr6_1:83970966-83970985 | Msa0895730:intron | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | + | chr6_1:83970980-83970999 | None:intergenic | 55.0% | |
| ! | TGGAGGGGGGTACATACCAT+TGG | + | chr6_1:83972006-83972025 | None:intergenic | 55.0% |
| CAGAAGCCGTGTCCTATGAG+AGG | + | chr6_1:83972921-83972940 | None:intergenic | 55.0% | |
| CTCTCATAGGACACGGCTTC+TGG | - | chr6_1:83972919-83972938 | Msa0895730:intron | 55.0% | |
| ! | AGTTGGTTCAATGGGGTCGG+CGG | + | chr6_1:83972959-83972978 | None:intergenic | 55.0% |
| CGACCCCATTGAACCAACTG+AGG | - | chr6_1:83972960-83972979 | Msa0895730:intron | 55.0% | |
| CAGAAGCCATGTCCTACGAG+AGG | + | chr6_1:83973100-83973119 | None:intergenic | 55.0% | |
| CTCTCGTAGGACATGGCTTC+TGG | - | chr6_1:83973098-83973117 | Msa0895730:intron | 55.0% | |
| CAGAAGCCGTGTCCTATGAG+AGG | + | chr6_1:83972921-83972940 | None:intergenic | 55.0% | |
| CTCTCATAGGACACGGCTTC+TGG | - | chr6_1:83972919-83972938 | Msa0895730:intron | 55.0% | |
| !! | AGTTGGTTCGTCTGGGTCGT+CGG | + | chr6_1:83973319-83973338 | None:intergenic | 55.0% |
| !! | CGTCCTCAGTTGGTTCGTCT+GGG | + | chr6_1:83973326-83973345 | None:intergenic | 55.0% |
| !! | TCGTCCTCAGTTGGTTCGTC+TGG | + | chr6_1:83973327-83973346 | None:intergenic | 55.0% |
| AGACGAACCAACTGAGGACG+AGG | - | chr6_1:83973326-83973345 | Msa0895730:intron | 55.0% | |
| GAGGGCAAGCCTTGGCACAA+TGG | - | chr6_1:83970512-83970531 | Msa0895730:intron | 60.0% | |
| GCGGCAAAGTGTGATCCACG+AGG | + | chr6_1:83970557-83970576 | None:intergenic | 60.0% | |
| AAGGGCCATATGGGGCTGAG+TGG | - | chr6_1:83970715-83970734 | Msa0895730:intron | 60.0% | |
| ! | GTTGGTTCAATGGGGTCGGC+GGG | + | chr6_1:83972958-83972977 | None:intergenic | 60.0% |
| CGACCCAGACGAACCAACTG+AGG | - | chr6_1:83973320-83973339 | Msa0895730:intron | 60.0% | |
| ATGCCGATGCCGATGCCGAA+AGG | - | chr6_1:83973477-83973496 | Msa0895730:intron | 60.0% | |
| GAGACGCTCCAACGTGACCG+TGG | - | chr6_1:83968427-83968446 | Msa0895730:three_prime_UTR | 65.0% | |
| GTGTGGGGGCAAAGCCCCCA+TGG | - | chr6_1:83970123-83970142 | Msa0895730:intron | 70.0% | |
| GGTTCGTCTGGGTCGTCGGC+AGG | + | chr6_1:83973315-83973334 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 83968402 | 83974204 | 83968402 | ID=Msa0895730;Name=Msa0895730 |
| chr6_1 | mRNA | 83968402 | 83974204 | 83968402 | ID=Msa0895730-mRNA-1;Parent=Msa0895730;Name=Msa0895730-mRNA-1;_AED=0.18;_eAED=0.18;_QI=16|1|1|1|0.91|0.84|13|300|370 |
| chr6_1 | exon | 83968402 | 83968679 | 83968402 | ID=Msa0895730-mRNA-1:exon:14227;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83968911 | 83969002 | 83968911 | ID=Msa0895730-mRNA-1:exon:14226;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83969108 | 83969145 | 83969108 | ID=Msa0895730-mRNA-1:exon:14225;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83969247 | 83969321 | 83969247 | ID=Msa0895730-mRNA-1:exon:14224;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83969428 | 83969499 | 83969428 | ID=Msa0895730-mRNA-1:exon:14223;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83969607 | 83969678 | 83969607 | ID=Msa0895730-mRNA-1:exon:14222;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83970460 | 83970522 | 83970460 | ID=Msa0895730-mRNA-1:exon:14221;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83970598 | 83970640 | 83970598 | ID=Msa0895730-mRNA-1:exon:14220;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83971186 | 83971262 | 83971186 | ID=Msa0895730-mRNA-1:exon:14219;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83971572 | 83971901 | 83971572 | ID=Msa0895730-mRNA-1:exon:14218;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83972732 | 83972811 | 83972732 | ID=Msa0895730-mRNA-1:exon:14217;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83973915 | 83974017 | 83973915 | ID=Msa0895730-mRNA-1:exon:14216;Parent=Msa0895730-mRNA-1 |
| chr6_1 | exon | 83974099 | 83974204 | 83974099 | ID=Msa0895730-mRNA-1:exon:14215;Parent=Msa0895730-mRNA-1 |
| chr6_1 | five_prime_UTR | 83974189 | 83974204 | 83974189 | ID=Msa0895730-mRNA-1:five_prime_utr;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83974099 | 83974188 | 83974099 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83973915 | 83974017 | 83973915 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83972732 | 83972811 | 83972732 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83971572 | 83971901 | 83971572 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83971186 | 83971262 | 83971186 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83970598 | 83970640 | 83970598 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83970460 | 83970522 | 83970460 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83969607 | 83969678 | 83969607 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83969428 | 83969499 | 83969428 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83969247 | 83969321 | 83969247 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83969108 | 83969145 | 83969108 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | CDS | 83968933 | 83969002 | 83968933 | ID=Msa0895730-mRNA-1:cds;Parent=Msa0895730-mRNA-1 |
| chr6_1 | three_prime_UTR | 83968911 | 83968932 | 83968911 | ID=Msa0895730-mRNA-1:three_prime_utr;Parent=Msa0895730-mRNA-1 |
| chr6_1 | three_prime_UTR | 83968402 | 83968679 | 83968402 | ID=Msa0895730-mRNA-1:three_prime_utr;Parent=Msa0895730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
