Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895770 | XP_039682782.1 | 98.089 | 471 | 9 | 0 | 1 | 471 | 1 | 471 | 0.0 | 967 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895770 | sp|Q9C9X7|IDD14_ARATH | 48.458 | 454 | 139 | 10 | 22 | 457 | 34 | 410 | 1.97e-127 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895770 | A0A396HKI0 | 98.089 | 471 | 9 | 0 | 1 | 471 | 1 | 471 | 0.0 | 967 |
Gene ID | Type | Classification |
---|---|---|
Msa0895770 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895770 | MtrunA17_Chr6g0479921 | 98.089 | 471 | 9 | 0 | 1 | 471 | 1 | 471 | 0.0 | 967 |
Msa0895770 | MtrunA17_Chr8g0375521 | 57.816 | 467 | 138 | 12 | 1 | 457 | 1 | 418 | 3.11e-172 | 490 |
Msa0895770 | MtrunA17_Chr7g0263941 | 58.730 | 189 | 70 | 3 | 1 | 184 | 3 | 188 | 6.62e-75 | 241 |
Msa0895770 | MtrunA17_Chr8g0373541 | 63.855 | 166 | 59 | 1 | 29 | 194 | 33 | 197 | 1.68e-74 | 243 |
Msa0895770 | MtrunA17_Chr8g0342421 | 65.385 | 156 | 53 | 1 | 29 | 184 | 62 | 216 | 1.82e-74 | 243 |
Msa0895770 | MtrunA17_Chr1g0181381 | 64.375 | 160 | 55 | 2 | 26 | 184 | 35 | 193 | 4.46e-74 | 241 |
Msa0895770 | MtrunA17_Chr1g0151351 | 61.404 | 171 | 59 | 3 | 21 | 185 | 28 | 197 | 6.50e-73 | 237 |
Msa0895770 | MtrunA17_Chr2g0330171 | 63.462 | 156 | 56 | 1 | 29 | 184 | 46 | 200 | 1.37e-72 | 236 |
Msa0895770 | MtrunA17_Chr1g0191991 | 56.757 | 185 | 69 | 2 | 29 | 203 | 63 | 246 | 5.45e-72 | 237 |
Msa0895770 | MtrunA17_Chr4g0040571 | 64.103 | 156 | 55 | 1 | 29 | 184 | 39 | 193 | 7.89e-72 | 235 |
Msa0895770 | MtrunA17_Chr1g0199101 | 62.179 | 156 | 58 | 1 | 29 | 184 | 47 | 201 | 1.38e-71 | 236 |
Msa0895770 | MtrunA17_Chr1g0185121 | 63.694 | 157 | 55 | 2 | 29 | 184 | 40 | 195 | 1.68e-71 | 233 |
Msa0895770 | MtrunA17_Chr2g0326381 | 62.179 | 156 | 57 | 2 | 29 | 183 | 32 | 186 | 3.09e-70 | 229 |
Msa0895770 | MtrunA17_Chr1g0210821 | 61.438 | 153 | 58 | 1 | 32 | 184 | 47 | 198 | 7.20e-70 | 232 |
Msa0895770 | MtrunA17_Chr1g0162971 | 59.615 | 156 | 62 | 1 | 29 | 184 | 41 | 195 | 1.24e-69 | 228 |
Msa0895770 | MtrunA17_Chr1g0163001 | 61.538 | 156 | 59 | 1 | 29 | 184 | 43 | 197 | 1.35e-69 | 230 |
Msa0895770 | MtrunA17_Chr4g0029521 | 61.783 | 157 | 58 | 2 | 29 | 184 | 38 | 193 | 1.89e-69 | 229 |
Msa0895770 | MtrunA17_Chr7g0268961 | 65.068 | 146 | 50 | 1 | 39 | 184 | 32 | 176 | 3.29e-68 | 226 |
Msa0895770 | MtrunA17_Chr3g0141431 | 58.642 | 162 | 65 | 2 | 24 | 184 | 17 | 177 | 1.55e-67 | 221 |
Msa0895770 | MtrunA17_Chr2g0324991 | 67.424 | 132 | 42 | 1 | 40 | 171 | 3 | 133 | 1.08e-62 | 200 |
Msa0895770 | MtrunA17_Chr3g0123941 | 37.908 | 153 | 86 | 4 | 35 | 179 | 114 | 265 | 5.88e-21 | 93.6 |
Msa0895770 | MtrunA17_Chr2g0320341 | 33.333 | 156 | 89 | 5 | 38 | 179 | 224 | 378 | 8.53e-20 | 91.3 |
Msa0895770 | MtrunA17_Chr1g0200421 | 35.333 | 150 | 82 | 7 | 43 | 179 | 236 | 383 | 7.06e-18 | 86.3 |
Msa0895770 | MtrunA17_Chr8g0382121 | 35.897 | 156 | 84 | 6 | 37 | 179 | 104 | 256 | 2.37e-17 | 82.8 |
Msa0895770 | MtrunA17_Chr4g0057391 | 39.241 | 79 | 48 | 0 | 360 | 438 | 62 | 140 | 3.15e-16 | 75.5 |
Msa0895770 | MtrunA17_Chr8g0352011 | 31.034 | 145 | 90 | 5 | 50 | 186 | 171 | 313 | 1.44e-13 | 71.6 |
Msa0895770 | MtrunA17_Chr7g0258011 | 30.822 | 146 | 89 | 6 | 50 | 186 | 181 | 323 | 2.59e-12 | 68.2 |
Msa0895770 | MtrunA17_Chr2g0328921 | 28.966 | 145 | 93 | 4 | 50 | 186 | 143 | 285 | 8.80e-12 | 66.2 |
Msa0895770 | MtrunA17_Chr2g0321291 | 30.496 | 141 | 82 | 5 | 50 | 179 | 138 | 273 | 2.21e-11 | 64.7 |
Msa0895770 | MtrunA17_Chr4g0026521 | 29.710 | 138 | 87 | 4 | 50 | 179 | 123 | 258 | 4.81e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895770 | AT1G68130.1 | 48.458 | 454 | 139 | 10 | 22 | 457 | 34 | 410 | 2.01e-128 | 379 |
Msa0895770 | AT2G01940.1 | 81.643 | 207 | 29 | 4 | 21 | 218 | 32 | 238 | 1.24e-122 | 365 |
Msa0895770 | AT2G01940.3 | 79.904 | 209 | 30 | 6 | 21 | 218 | 32 | 239 | 2.62e-117 | 352 |
Msa0895770 | AT1G25250.3 | 81.026 | 195 | 32 | 2 | 22 | 211 | 26 | 220 | 1.17e-113 | 340 |
Msa0895770 | AT1G25250.3 | 57.303 | 89 | 31 | 2 | 375 | 457 | 295 | 382 | 1.29e-22 | 99.8 |
Msa0895770 | AT1G25250.1 | 81.461 | 178 | 28 | 2 | 39 | 211 | 20 | 197 | 1.11e-102 | 311 |
Msa0895770 | AT1G25250.1 | 44.444 | 135 | 68 | 2 | 329 | 457 | 226 | 359 | 1.09e-22 | 99.8 |
Msa0895770 | AT1G68130.2 | 42.893 | 401 | 134 | 10 | 75 | 457 | 1 | 324 | 5.87e-89 | 275 |
Msa0895770 | AT2G01940.2 | 80.000 | 150 | 25 | 3 | 75 | 219 | 1 | 150 | 2.25e-83 | 261 |
Msa0895770 | AT1G25250.2 | 77.465 | 142 | 27 | 2 | 75 | 211 | 1 | 142 | 8.81e-74 | 235 |
Msa0895770 | AT1G25250.2 | 57.303 | 89 | 31 | 2 | 375 | 457 | 217 | 304 | 3.53e-23 | 100 |
Msa0895770 | AT5G66730.1 | 64.151 | 159 | 56 | 1 | 26 | 184 | 29 | 186 | 1.52e-72 | 238 |
Msa0895770 | AT3G50700.1 | 59.195 | 174 | 65 | 2 | 26 | 194 | 31 | 203 | 2.86e-72 | 236 |
Msa0895770 | AT1G55110.3 | 63.125 | 160 | 57 | 2 | 26 | 184 | 60 | 218 | 7.53e-71 | 232 |
Msa0895770 | AT1G55110.1 | 63.125 | 160 | 57 | 2 | 26 | 184 | 60 | 218 | 7.53e-71 | 232 |
Msa0895770 | AT1G55110.2 | 63.125 | 160 | 57 | 2 | 26 | 184 | 60 | 218 | 7.53e-71 | 232 |
Msa0895770 | AT2G02080.1 | 60.256 | 156 | 61 | 1 | 29 | 184 | 54 | 208 | 1.64e-70 | 233 |
Msa0895770 | AT2G02080.4 | 60.256 | 156 | 61 | 1 | 29 | 184 | 54 | 208 | 1.64e-70 | 233 |
Msa0895770 | AT2G02080.5 | 60.256 | 156 | 61 | 1 | 29 | 184 | 54 | 208 | 1.64e-70 | 233 |
Msa0895770 | AT2G02080.3 | 60.256 | 156 | 61 | 1 | 29 | 184 | 54 | 208 | 1.64e-70 | 233 |
Msa0895770 | AT5G03150.1 | 62.112 | 161 | 59 | 2 | 25 | 184 | 49 | 208 | 3.38e-70 | 231 |
Msa0895770 | AT1G03840.1 | 63.462 | 156 | 56 | 1 | 29 | 184 | 41 | 195 | 3.78e-70 | 231 |
Msa0895770 | AT4G02670.2 | 58.757 | 177 | 66 | 3 | 29 | 199 | 55 | 230 | 2.41e-69 | 226 |
Msa0895770 | AT4G02670.1 | 58.757 | 177 | 66 | 3 | 29 | 199 | 53 | 228 | 2.51e-69 | 226 |
Msa0895770 | AT1G14580.1 | 58.333 | 156 | 64 | 1 | 29 | 184 | 53 | 207 | 8.72e-69 | 227 |
Msa0895770 | AT1G14580.2 | 58.333 | 156 | 64 | 1 | 29 | 184 | 53 | 207 | 8.72e-69 | 227 |
Msa0895770 | AT3G13810.6 | 62.500 | 160 | 58 | 2 | 25 | 183 | 47 | 205 | 8.95e-69 | 228 |
Msa0895770 | AT3G13810.5 | 62.500 | 160 | 58 | 2 | 25 | 183 | 61 | 219 | 1.04e-68 | 228 |
Msa0895770 | AT3G13810.4 | 62.500 | 160 | 58 | 2 | 25 | 183 | 66 | 224 | 1.06e-68 | 228 |
Msa0895770 | AT3G13810.1 | 62.500 | 160 | 58 | 2 | 25 | 183 | 66 | 224 | 1.06e-68 | 228 |
Msa0895770 | AT1G14580.3 | 58.333 | 156 | 64 | 1 | 29 | 184 | 67 | 221 | 1.46e-68 | 227 |
Msa0895770 | AT5G44160.1 | 62.179 | 156 | 58 | 1 | 29 | 184 | 37 | 191 | 4.24e-68 | 225 |
Msa0895770 | AT5G60470.3 | 50.000 | 204 | 95 | 3 | 6 | 208 | 22 | 219 | 1.01e-67 | 224 |
Msa0895770 | AT5G60470.2 | 50.000 | 204 | 95 | 3 | 6 | 208 | 26 | 223 | 1.14e-67 | 224 |
Msa0895770 | AT2G02070.2 | 59.615 | 156 | 62 | 1 | 29 | 184 | 52 | 206 | 3.77e-67 | 226 |
Msa0895770 | AT2G02070.1 | 59.615 | 156 | 62 | 1 | 29 | 184 | 52 | 206 | 3.77e-67 | 226 |
Msa0895770 | AT3G45260.2 | 59.873 | 157 | 61 | 2 | 29 | 184 | 39 | 194 | 4.06e-67 | 222 |
Msa0895770 | AT3G45260.1 | 59.873 | 157 | 61 | 2 | 29 | 184 | 39 | 194 | 4.06e-67 | 222 |
Msa0895770 | AT1G03840.2 | 62.179 | 156 | 56 | 2 | 29 | 184 | 41 | 193 | 1.73e-66 | 222 |
Msa0895770 | AT5G44160.2 | 63.014 | 146 | 53 | 1 | 39 | 184 | 8 | 152 | 1.33e-64 | 215 |
Msa0895770 | AT3G13810.3 | 64.138 | 145 | 50 | 2 | 40 | 183 | 68 | 211 | 1.18e-63 | 214 |
Msa0895770 | AT3G13810.2 | 64.138 | 145 | 50 | 2 | 40 | 183 | 82 | 225 | 1.89e-63 | 214 |
Msa0895770 | AT5G60470.1 | 53.529 | 170 | 77 | 2 | 40 | 208 | 46 | 214 | 2.10e-61 | 207 |
Msa0895770 | AT2G02080.6 | 59.091 | 132 | 53 | 1 | 53 | 184 | 1 | 131 | 5.81e-58 | 197 |
Msa0895770 | AT2G02080.2 | 59.091 | 132 | 53 | 1 | 53 | 184 | 1 | 131 | 5.81e-58 | 197 |
Msa0895770 | AT5G22890.1 | 30.994 | 171 | 102 | 6 | 24 | 179 | 182 | 351 | 1.22e-17 | 84.7 |
Msa0895770 | AT1G34370.3 | 31.210 | 157 | 91 | 5 | 38 | 179 | 14 | 168 | 1.32e-16 | 80.5 |
Msa0895770 | AT1G34370.2 | 31.210 | 157 | 91 | 5 | 38 | 179 | 224 | 378 | 2.12e-16 | 82.0 |
Msa0895770 | AT1G34370.1 | 31.210 | 157 | 91 | 5 | 38 | 179 | 224 | 378 | 2.12e-16 | 82.0 |
Msa0895770 | AT3G48550.1 | 41.772 | 79 | 46 | 0 | 360 | 438 | 79 | 157 | 8.55e-16 | 75.1 |
Msa0895770 | AT3G20880.1 | 29.252 | 147 | 94 | 4 | 50 | 188 | 248 | 392 | 6.65e-12 | 67.8 |
Find 100 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTATGCATCTGTAAATTT+TGG | 0.191998 | 6_1:+84362622 | None:intergenic |
TGGTATTTGTTAATTTAATT+TGG | 0.197563 | 6_1:-84359915 | Msa0895770:three_prime_UTR |
ATAGTAGTAATAGGAGTAAT+AGG | 0.205036 | 6_1:+84360811 | None:intergenic |
CATAGCTATACTATAGTTAT+AGG | 0.251776 | 6_1:-84363276 | Msa0895770:five_prime_UTR |
TTGCTATTGCTACTCTCTTT+TGG | 0.260760 | 6_1:+84360538 | None:intergenic |
TTGAAATTTGTTTCACTTGA+TGG | 0.265033 | 6_1:+84360904 | None:intergenic |
GCACTTCTTCCACTAATAAA+AGG | 0.270599 | 6_1:-84363109 | Msa0895770:CDS |
AGTGAACTTGATAAAGCTTA+TGG | 0.272526 | 6_1:-84360325 | Msa0895770:CDS |
CATGATCCTTGTCATGCTTT+AGG | 0.279693 | 6_1:-84362507 | Msa0895770:CDS |
AACAAGCAAAGGAACAATTA+AGG | 0.285904 | 6_1:-84360462 | Msa0895770:CDS |
GAAGGTGTAATAGTAGTAAT+AGG | 0.296600 | 6_1:+84360802 | None:intergenic |
GAGTAGAAGTTTATTGTTCT+TGG | 0.315722 | 6_1:+84360765 | None:intergenic |
TCAACATGAAGATAACTCTT+TGG | 0.326169 | 6_1:-84360227 | Msa0895770:CDS |
CTTTCTTTCTATGTTCCTTT+CGG | 0.329565 | 6_1:+84363378 | None:intergenic |
ACTCAGTTGCATCTCTCAAT+AGG | 0.329653 | 6_1:-84360622 | Msa0895770:CDS |
GAGAGTTGAAGTTCCAAGTT+TGG | 0.344241 | 6_1:+84360739 | None:intergenic |
TTTGGTCCCTTTGGAATCCT+TGG | 0.356941 | 6_1:+84362640 | None:intergenic |
TAATTAATATCTTTGAGAAT+TGG | 0.361159 | 6_1:-84360047 | Msa0895770:three_prime_UTR |
TTGGAGAAAGTTTGAGAAGA+AGG | 0.371907 | 6_1:+84360784 | None:intergenic |
GTTGGGATTAATTAATAGTT+GGG | 0.372808 | 6_1:-84359988 | Msa0895770:three_prime_UTR |
GAGTTGTTGGTTATGTAAGT+TGG | 0.379165 | 6_1:-84360006 | Msa0895770:three_prime_UTR |
CATGGTGAATTAAGAGTTGT+TGG | 0.399438 | 6_1:-84360019 | Msa0895770:three_prime_UTR |
AGTTGTTGGTTATGTAAGTT+GGG | 0.402039 | 6_1:-84360005 | Msa0895770:three_prime_UTR |
AGTTGGGATTAATTAATAGT+TGG | 0.405382 | 6_1:-84359989 | Msa0895770:three_prime_UTR |
TTCACCACCTTCAGTAGTTA+TGG | 0.411636 | 6_1:+84360183 | None:intergenic |
GTGGTTGAGATTCTGAATTA+TGG | 0.414564 | 6_1:+84360974 | None:intergenic |
AGAGACACCACTTCTGCATC+TGG | 0.419684 | 6_1:+84362714 | None:intergenic |
TCTCTCTTCAATAGCTTCCA+TGG | 0.428102 | 6_1:+84362585 | None:intergenic |
AGATTGCACTGCATAACCTT+TGG | 0.429152 | 6_1:+84362410 | None:intergenic |
AGCAAAGAAACAAATTGAAA+TGG | 0.432424 | 6_1:-84360395 | Msa0895770:CDS |
TGGTGCAAACAAGTTGGTTC+AGG | 0.440705 | 6_1:+84362528 | None:intergenic |
AGAAGACAAACCTGGTGTTC+CGG | 0.442410 | 6_1:+84363073 | None:intergenic |
GTAGAAAATGTTGATGGAAA+AGG | 0.444254 | 6_1:-84360160 | Msa0895770:CDS |
CTCAGTTGCATCTCTCAATA+GGG | 0.455582 | 6_1:-84360621 | Msa0895770:CDS |
CGTGTTGGTGTTGTTTGTGG+TGG | 0.457194 | 6_1:+84360717 | None:intergenic |
ACAAGCAAAGGAACAATTAA+GGG | 0.459888 | 6_1:-84360461 | Msa0895770:CDS |
CATGCTTTAGGTGATCTTGT+TGG | 0.466169 | 6_1:-84362495 | Msa0895770:CDS |
TTTGTTTCACTTGATGGACT+TGG | 0.468237 | 6_1:+84360910 | None:intergenic |
ACTTCTACTCCATCCAAACT+TGG | 0.469640 | 6_1:-84360752 | Msa0895770:CDS |
GTACCAACACTTCTGATTGA+AGG | 0.475892 | 6_1:+84360676 | None:intergenic |
TCAGAAGATGGAAGTGAAGA+TGG | 0.478640 | 6_1:+84363155 | None:intergenic |
AAACAACATGGCTTTGTTGA+GGG | 0.481856 | 6_1:-84360491 | Msa0895770:CDS |
AGTCGTGTTGGTGTTGTTTG+TGG | 0.482657 | 6_1:+84360714 | None:intergenic |
TAGTAGTAATAGGAGTAATA+GGG | 0.486179 | 6_1:+84360812 | None:intergenic |
AGGCTATTCAGAAGGTTAAC+CGG | 0.501979 | 6_1:-84360648 | Msa0895770:CDS |
ACATAGTAATCATAAACAAT+GGG | 0.505280 | 6_1:-84362448 | Msa0895770:CDS |
AGAAGACCGGCCGGAACACC+AGG | 0.510779 | 6_1:-84363083 | Msa0895770:intron |
CATCAAGATGCTTGCAACAT+GGG | 0.511025 | 6_1:-84361003 | Msa0895770:CDS |
GTTGAAGTTCCAAGTTTGGA+TGG | 0.511669 | 6_1:+84360743 | None:intergenic |
GGTGAAGTAGAAAATGTTGA+TGG | 0.512722 | 6_1:-84360166 | Msa0895770:CDS |
GTATGTGAGATCTGCAACCA+AGG | 0.515942 | 6_1:-84362657 | Msa0895770:CDS |
CAAACAACATGGCTTTGTTG+AGG | 0.518950 | 6_1:-84360492 | Msa0895770:CDS |
ACTTGCAGCAGTTTGTGAAA+TGG | 0.526362 | 6_1:-84359935 | Msa0895770:three_prime_UTR |
TCCCTTCTGAATATCATGGT+TGG | 0.526726 | 6_1:-84363559 | Msa0895770:five_prime_UTR |
ACAATCCCTTCTGAATATCA+TGG | 0.527160 | 6_1:-84363563 | Msa0895770:five_prime_UTR |
TTGGGATTAATTAATAGTTG+GGG | 0.527470 | 6_1:-84359987 | Msa0895770:three_prime_UTR |
AACATAGTAATCATAAACAA+TGG | 0.531879 | 6_1:-84362449 | Msa0895770:CDS |
CTAAAGCATGACAAGGATCA+TGG | 0.532248 | 6_1:+84362508 | None:intergenic |
ATTTACAGATGCATAGAAGA+AGG | 0.537823 | 6_1:-84362617 | Msa0895770:CDS |
GTCTGTTGTCAGAGTCGTGT+TGG | 0.543599 | 6_1:+84360702 | None:intergenic |
GATGCATAGAAGAAGGCATA+AGG | 0.546337 | 6_1:-84362610 | Msa0895770:CDS |
TCTTCTGCCATAACTACTGA+AGG | 0.549896 | 6_1:-84360190 | Msa0895770:CDS |
GCTTGAAGCCTTGTTTGCCA+TGG | 0.551999 | 6_1:+84360874 | None:intergenic |
GCATCAAGATGCTTGCAACA+TGG | 0.560086 | 6_1:-84361004 | Msa0895770:CDS |
GACAAACCTGGTGTTCCGGC+CGG | 0.564975 | 6_1:+84363077 | None:intergenic |
AGAGATGCAACTGAGTTGAC+CGG | 0.567581 | 6_1:+84360629 | None:intergenic |
AAGATGCTTGCAACATGGGA+AGG | 0.571020 | 6_1:-84360999 | Msa0895770:CDS |
CTCAAAACTTGTGGTACTAG+AGG | 0.574559 | 6_1:-84362372 | Msa0895770:CDS |
ATACATGTCCATGGCAAACA+AGG | 0.574678 | 6_1:-84360882 | Msa0895770:CDS |
AGATAAGCTATTAGCTAACA+TGG | 0.580180 | 6_1:+84363178 | None:intergenic |
TACTGTGGAGGCTATTCAGA+AGG | 0.581212 | 6_1:-84360656 | Msa0895770:CDS |
CTTTGAGAATTGGTATACCA+TGG | 0.584614 | 6_1:-84360037 | Msa0895770:three_prime_UTR |
CAAATTTCAATACATGTCCA+TGG | 0.586561 | 6_1:-84360891 | Msa0895770:CDS |
AAAGCTCATCTCAAAACTTG+TGG | 0.590538 | 6_1:-84362381 | Msa0895770:CDS |
AGAGGTCATTCATGTGATTG+TGG | 0.593681 | 6_1:-84362354 | Msa0895770:CDS |
TTCCAACCATGATATTCAGA+AGG | 0.595101 | 6_1:+84363557 | None:intergenic |
AAGCTTATGCTGAAGAAGCA+AGG | 0.595645 | 6_1:-84360423 | Msa0895770:CDS |
AATCAGAAGTGTTGGTACTG+TGG | 0.596959 | 6_1:-84360671 | Msa0895770:CDS |
TAATAAAAGGAAAAGAAGAC+CGG | 0.599740 | 6_1:-84363096 | Msa0895770:CDS |
TCCAACCATGATATTCAGAA+GGG | 0.601573 | 6_1:+84363558 | None:intergenic |
GTTTGTGAAAGATGTTCCAA+AGG | 0.605307 | 6_1:-84362426 | Msa0895770:CDS |
CATGCAGTTGGTGTTTGAAG+TGG | 0.606082 | 6_1:+84360955 | None:intergenic |
CTGCAACCAAGGATTCCAAA+GGG | 0.607708 | 6_1:-84362646 | Msa0895770:CDS |
GGATCATGGTGCAAACAAGT+TGG | 0.608116 | 6_1:+84362522 | None:intergenic |
GGAACAATTAAGGGTAGCTG+TGG | 0.608464 | 6_1:-84360452 | Msa0895770:CDS |
AAAAGGAAAAGAAGACCGGC+CGG | 0.608705 | 6_1:-84363092 | Msa0895770:CDS |
ACGCCTTCAATCAGAAGTGT+TGG | 0.611782 | 6_1:-84360679 | Msa0895770:CDS |
GAAGAAGGCATAAGGTACCA+TGG | 0.614434 | 6_1:-84362602 | Msa0895770:CDS |
TGGGATTAATTAATAGTTGG+GGG | 0.615126 | 6_1:-84359986 | Msa0895770:three_prime_UTR |
AATAGATCCAGATGCAGAAG+TGG | 0.615906 | 6_1:-84362721 | Msa0895770:intron |
GTTCTTGATAAGCATGCAGT+TGG | 0.616099 | 6_1:+84360943 | None:intergenic |
GAGGGTTCAAGAACAAGCAA+AGG | 0.630915 | 6_1:-84360473 | Msa0895770:CDS |
CAGAAGTGTTGGTACTGTGG+AGG | 0.634164 | 6_1:-84360668 | Msa0895770:CDS |
TCTGCAACCAAGGATTCCAA+AGG | 0.641443 | 6_1:-84362647 | Msa0895770:CDS |
CAACAACTCTTAATTCACCA+TGG | 0.651102 | 6_1:+84360020 | None:intergenic |
TCTGCCATAACTACTGAAGG+TGG | 0.661155 | 6_1:-84360187 | Msa0895770:CDS |
AAAGCTGAGAGGATACCGAA+AGG | 0.672530 | 6_1:-84363393 | Msa0895770:five_prime_UTR |
ATCAACAACAACAAACAACA+TGG | 0.678900 | 6_1:-84360503 | Msa0895770:CDS |
AGATCACCTAAAGCATGACA+AGG | 0.685132 | 6_1:+84362501 | None:intergenic |
CAAGTTAAAAGAAAGCTGAG+AGG | 0.686957 | 6_1:-84363404 | Msa0895770:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTATTTTTTTTAAATA+TGG | - | chr6_1:84360598-84360617 | Msa0895770:CDS | 0.0% |
!! | ATAAAAAAAAATAATATTAA+TGG | + | chr6_1:84361809-84361828 | None:intergenic | 0.0% |
!! | TATAAAAAAATACTTGAAAA+AGG | + | chr6_1:84361217-84361236 | None:intergenic | 10.0% |
!!! | TTTGAAACAAAAATATAAAA+AGG | + | chr6_1:84362085-84362104 | None:intergenic | 10.0% |
!! | CTACAAAAAATATATATAAA+TGG | + | chr6_1:84362417-84362436 | None:intergenic | 10.0% |
!!! | CATTTATATATATTTTTTGT+AGG | - | chr6_1:84362415-84362434 | Msa0895770:CDS | 10.0% |
!!! | ACTATATTATATATTTTCTA+TGG | - | chr6_1:84363362-84363381 | Msa0895770:five_prime_UTR | 10.0% |
!!! | AAATTGTTCTTTATTTTGTT+TGG | - | chr6_1:84360710-84360729 | Msa0895770:CDS | 15.0% |
!! | AATCTTTATATATACTTCAT+GGG | - | chr6_1:84361334-84361353 | Msa0895770:intron | 15.0% |
!! | AATATAAAAGTAAGGAAAAT+GGG | - | chr6_1:84361498-84361517 | Msa0895770:intron | 15.0% |
!! | AAAACATAAAGAAATGTTTA+AGG | + | chr6_1:84361760-84361779 | None:intergenic | 15.0% |
!! | GTCAATTATTATTGTTAATT+AGG | - | chr6_1:84362228-84362247 | Msa0895770:intron | 15.0% |
!! | TATTACTATTTAAAGAATTG+AGG | + | chr6_1:84362318-84362337 | None:intergenic | 15.0% |
!! | TAAATTTACATATACTAGTA+GGG | - | chr6_1:84362366-84362385 | Msa0895770:CDS | 15.0% |
!!! | TAATTAATATCTTTGAGAAT+TGG | - | chr6_1:84363412-84363431 | Msa0895770:five_prime_UTR | 15.0% |
!!! | TGGTATTTGTTAATTTAATT+TGG | - | chr6_1:84363544-84363563 | Msa0895770:five_prime_UTR | 15.0% |
!!! | TATTTTTTTTTTCTCTCTCT+GGG | + | chr6_1:84359949-84359968 | None:intergenic | 20.0% |
!!! | ATATTTTTTTTTTCTCTCTC+TGG | + | chr6_1:84359950-84359969 | None:intergenic | 20.0% |
!! | AAAAAACATGATTCAAGAAT+TGG | + | chr6_1:84360499-84360518 | None:intergenic | 20.0% |
!!! | TCATGTTTTTTTTGTTGTAT+TGG | - | chr6_1:84360508-84360527 | Msa0895770:CDS | 20.0% |
!! | AACATAGTAATCATAAACAA+TGG | - | chr6_1:84361010-84361029 | Msa0895770:CDS | 20.0% |
!! | ACATAGTAATCATAAACAAT+GGG | - | chr6_1:84361011-84361030 | Msa0895770:CDS | 20.0% |
!! | TTGATTCTTGATTCATAAAA+TGG | - | chr6_1:84361266-84361285 | Msa0895770:intron | 20.0% |
!! | GAATCTTTATATATACTTCA+TGG | - | chr6_1:84361333-84361352 | Msa0895770:intron | 20.0% |
!! | ATGATGATTATAATGAATTG+AGG | - | chr6_1:84361412-84361431 | Msa0895770:intron | 20.0% |
!!! | AAAAAGGAAGATATGTTTTT+TGG | - | chr6_1:84361470-84361489 | Msa0895770:intron | 20.0% |
!! | GAATATAAAAGTAAGGAAAA+TGG | - | chr6_1:84361497-84361516 | Msa0895770:intron | 20.0% |
!! | TCAAAAATATATTTGACTGA+TGG | - | chr6_1:84361562-84361581 | Msa0895770:intron | 20.0% |
!!! | TTTTTGAAGAAAACACAAAA+CGG | + | chr6_1:84361698-84361717 | None:intergenic | 20.0% |
!!! | TTTTGTCCTTTTTATTTTAG+TGG | - | chr6_1:84361903-84361922 | Msa0895770:intron | 20.0% |
!! | TTCATTAGATATAAAGAGTT+AGG | + | chr6_1:84362060-84362079 | None:intergenic | 20.0% |
!! | TAATAATAAAATCACACACA+TGG | + | chr6_1:84362176-84362195 | None:intergenic | 20.0% |
!! | GTAAATTTACATATACTAGT+AGG | - | chr6_1:84362365-84362384 | Msa0895770:CDS | 20.0% |
!!! | ATTAATTAGCCTTAAAAAAG+TGG | + | chr6_1:84363400-84363419 | None:intergenic | 20.0% |
!! | TATAGTATAGCTATGTTTTG+AGG | + | chr6_1:84360178-84360197 | None:intergenic | 25.0% |
! | CATAGCTATACTATAGTTAT+AGG | - | chr6_1:84360183-84360202 | Msa0895770:CDS | 25.0% |
!! | TCTTCTTTTCCTTTTATTAG+TGG | + | chr6_1:84360362-84360381 | None:intergenic | 25.0% |
! | TAATAAAAGGAAAAGAAGAC+CGG | - | chr6_1:84360363-84360382 | Msa0895770:CDS | 25.0% |
!!! | GTTCTTTATTTTGTTTGGTT+TGG | - | chr6_1:84360715-84360734 | Msa0895770:CDS | 25.0% |
!! | TTCTATGCATCTGTAAATTT+TGG | + | chr6_1:84360840-84360859 | None:intergenic | 25.0% |
!! | AAAACTCTTTTTCTAACAAC+TGG | + | chr6_1:84360904-84360923 | None:intergenic | 25.0% |
! | ATGAATCAAGAATCAATCAT+AGG | + | chr6_1:84361262-84361281 | None:intergenic | 25.0% |
! | TTTATATATACTTCATGGGA+TGG | - | chr6_1:84361338-84361357 | Msa0895770:intron | 25.0% |
! | TTATATATACTTCATGGGAT+GGG | - | chr6_1:84361339-84361358 | Msa0895770:intron | 25.0% |
!!! | AAAACTTGAGTTGTTTTACT+TGG | - | chr6_1:84361435-84361454 | Msa0895770:intron | 25.0% |
!!! | AAACTTGAGTTGTTTTACTT+GGG | - | chr6_1:84361436-84361455 | Msa0895770:intron | 25.0% |
!! | TTGGGATTTGACTTTAAAAA+AGG | - | chr6_1:84361454-84361473 | Msa0895770:intron | 25.0% |
! | TTTGTGTAGAAAGAATGAAA+TGG | + | chr6_1:84361729-84361748 | None:intergenic | 25.0% |
! | CAGTTTCCACTAAAATAAAA+AGG | + | chr6_1:84361912-84361931 | None:intergenic | 25.0% |
!!! | CTTTTTATTTTAGTGGAAAC+TGG | - | chr6_1:84361910-84361929 | Msa0895770:intron | 25.0% |
! | AATGAAAAAGTGGATGTAAA+AGG | + | chr6_1:84361995-84362014 | None:intergenic | 25.0% |
! | AAAAATGTACAAAGGAAGAA+AGG | + | chr6_1:84362036-84362055 | None:intergenic | 25.0% |
! | AGTTAGGAAAAAATGTACAA+AGG | + | chr6_1:84362044-84362063 | None:intergenic | 25.0% |
!! | TTGAAATTTGTTTCACTTGA+TGG | + | chr6_1:84362558-84362577 | None:intergenic | 25.0% |
!!! | GTTGATTCTTTTGTTGTTTT+TGG | + | chr6_1:84362615-84362634 | None:intergenic | 25.0% |
! | TAGTAGTAATAGGAGTAATA+GGG | + | chr6_1:84362650-84362669 | None:intergenic | 25.0% |
! | ATAGTAGTAATAGGAGTAAT+AGG | + | chr6_1:84362651-84362670 | None:intergenic | 25.0% |
! | AGCAAAGAAACAAATTGAAA+TGG | - | chr6_1:84363064-84363083 | Msa0895770:intron | 25.0% |
!!! | TTTCTATGTCCACTTTTTTA+AGG | - | chr6_1:84363388-84363407 | Msa0895770:five_prime_UTR | 25.0% |
! | AGTTGGGATTAATTAATAGT+TGG | - | chr6_1:84363470-84363489 | Msa0895770:five_prime_UTR | 25.0% |
! | GTTGGGATTAATTAATAGTT+GGG | - | chr6_1:84363471-84363490 | Msa0895770:five_prime_UTR | 25.0% |
! | TTGGGATTAATTAATAGTTG+GGG | - | chr6_1:84363472-84363491 | Msa0895770:five_prime_UTR | 25.0% |
CTTTCTTTCTATGTTCCTTT+CGG | + | chr6_1:84360084-84360103 | None:intergenic | 30.0% | |
AGATAAGCTATTAGCTAACA+TGG | + | chr6_1:84360284-84360303 | None:intergenic | 30.0% | |
! | CCATTTTCATTGCAAGAAAA+AGG | + | chr6_1:84360331-84360350 | None:intergenic | 30.0% |
! | CCTTTTTCTTGCAATGAAAA+TGG | - | chr6_1:84360328-84360347 | Msa0895770:CDS | 30.0% |
AAAAAGAAAGAGGATTTAGG+AGG | + | chr6_1:84360415-84360434 | None:intergenic | 30.0% | |
! | TCTGATTCCAACAATGTTTT+TGG | + | chr6_1:84360775-84360794 | None:intergenic | 30.0% |
ATTTACAGATGCATAGAAGA+AGG | - | chr6_1:84360842-84360861 | Msa0895770:CDS | 30.0% | |
!!! | AGGAAGATATGTTTTTTGGA+AGG | - | chr6_1:84361474-84361493 | Msa0895770:intron | 30.0% |
!!! | GGAAGATATGTTTTTTGGAA+GGG | - | chr6_1:84361475-84361494 | Msa0895770:intron | 30.0% |
TGGAAGGGAATATAAAAGTA+AGG | - | chr6_1:84361490-84361509 | Msa0895770:intron | 30.0% | |
AAAAGTAAGGAAAATGGGAA+TGG | - | chr6_1:84361503-84361522 | Msa0895770:intron | 30.0% | |
AATGGGAATGGAAAAACAAA+AGG | - | chr6_1:84361515-84361534 | Msa0895770:intron | 30.0% | |
AAGAGAGACAAATGAAAAAG+TGG | + | chr6_1:84362005-84362024 | None:intergenic | 30.0% | |
! | CAATTCAGCTTTATGTTTCT+GGG | - | chr6_1:84362289-84362308 | Msa0895770:intron | 30.0% |
CAAATTTCAATACATGTCCA+TGG | - | chr6_1:84362568-84362587 | Msa0895770:CDS | 30.0% | |
! | GAAGGTGTAATAGTAGTAAT+AGG | + | chr6_1:84362660-84362679 | None:intergenic | 30.0% |
GAGTAGAAGTTTATTGTTCT+TGG | + | chr6_1:84362697-84362716 | None:intergenic | 30.0% | |
ATCAACAACAACAAACAACA+TGG | - | chr6_1:84362956-84362975 | Msa0895770:intron | 30.0% | |
AACAAGCAAAGGAACAATTA+AGG | - | chr6_1:84362997-84363016 | Msa0895770:intron | 30.0% | |
ACAAGCAAAGGAACAATTAA+GGG | - | chr6_1:84362998-84363017 | Msa0895770:intron | 30.0% | |
AGTGAACTTGATAAAGCTTA+TGG | - | chr6_1:84363134-84363153 | Msa0895770:CDS | 30.0% | |
TCAACATGAAGATAACTCTT+TGG | - | chr6_1:84363232-84363251 | Msa0895770:five_prime_UTR | 30.0% | |
! | GTAGAAAATGTTGATGGAAA+AGG | - | chr6_1:84363299-84363318 | Msa0895770:five_prime_UTR | 30.0% |
! | AGTTGTTGGTTATGTAAGTT+GGG | - | chr6_1:84363454-84363473 | Msa0895770:five_prime_UTR | 30.0% |
TGGGATTAATTAATAGTTGG+GGG | - | chr6_1:84363473-84363492 | Msa0895770:five_prime_UTR | 30.0% | |
ACAATCCCTTCTGAATATCA+TGG | - | chr6_1:84359896-84359915 | Msa0895770:three_prime_UTR | 35.0% | |
TCCAACCATGATATTCAGAA+GGG | + | chr6_1:84359904-84359923 | None:intergenic | 35.0% | |
TTCCAACCATGATATTCAGA+AGG | + | chr6_1:84359905-84359924 | None:intergenic | 35.0% | |
CAAGTTAAAAGAAAGCTGAG+AGG | - | chr6_1:84360055-84360074 | Msa0895770:three_prime_UTR | 35.0% | |
GCACTTCTTCCACTAATAAA+AGG | - | chr6_1:84360350-84360369 | Msa0895770:CDS | 35.0% | |
GCGAAAAAGAAAGAGGATTT+AGG | + | chr6_1:84360418-84360437 | None:intergenic | 35.0% | |
! | GTTAGAGTTTAGAAGTACGA+AGG | + | chr6_1:84360455-84360474 | None:intergenic | 35.0% |
! | GTTGAGATTTTCTCTAACAC+TGG | + | chr6_1:84360477-84360496 | None:intergenic | 35.0% |
TCTCTCACCAAAAACATTGT+TGG | - | chr6_1:84360765-84360784 | Msa0895770:CDS | 35.0% | |
!! | TCTGTAAATTTTGGTCCCTT+TGG | + | chr6_1:84360831-84360850 | None:intergenic | 35.0% |
GTTTGTGAAAGATGTTCCAA+AGG | - | chr6_1:84361033-84361052 | Msa0895770:intron | 35.0% | |
AAAGCTCATCTCAAAACTTG+TGG | - | chr6_1:84361078-84361097 | Msa0895770:intron | 35.0% | |
GTTATAAGAGCAACGGAAAA+CGG | + | chr6_1:84361676-84361695 | None:intergenic | 35.0% | |
CAAAACGGTTATAAGAGCAA+CGG | + | chr6_1:84361683-84361702 | None:intergenic | 35.0% | |
! | TATCCACTGGATTTTCCAAA+TGG | + | chr6_1:84361956-84361975 | None:intergenic | 35.0% |
!! | GATGTAAAAGGTGTTGGAAA+AGG | + | chr6_1:84361983-84362002 | None:intergenic | 35.0% |
! | AAAGTGGATGTAAAAGGTGT+TGG | + | chr6_1:84361989-84362008 | None:intergenic | 35.0% |
! | GCAATTCAGCTTTATGTTTC+TGG | - | chr6_1:84362288-84362307 | Msa0895770:intron | 35.0% |
GTGGTTGAGATTCTGAATTA+TGG | + | chr6_1:84362488-84362507 | None:intergenic | 35.0% | |
!! | TTTGTTTCACTTGATGGACT+TGG | + | chr6_1:84362552-84362571 | None:intergenic | 35.0% |
TTGGAGAAAGTTTGAGAAGA+AGG | + | chr6_1:84362678-84362697 | None:intergenic | 35.0% | |
!! | TTGCTATTGCTACTCTCTTT+TGG | + | chr6_1:84362924-84362943 | None:intergenic | 35.0% |
!! | AAACAACATGGCTTTGTTGA+GGG | - | chr6_1:84362968-84362987 | Msa0895770:intron | 35.0% |
GGTGAAGTAGAAAATGTTGA+TGG | - | chr6_1:84363293-84363312 | Msa0895770:five_prime_UTR | 35.0% | |
! | CTTTGAGAATTGGTATACCA+TGG | - | chr6_1:84363422-84363441 | Msa0895770:five_prime_UTR | 35.0% |
CAACAACTCTTAATTCACCA+TGG | + | chr6_1:84363442-84363461 | None:intergenic | 35.0% | |
CATGGTGAATTAAGAGTTGT+TGG | - | chr6_1:84363440-84363459 | Msa0895770:five_prime_UTR | 35.0% | |
! | GAGTTGTTGGTTATGTAAGT+TGG | - | chr6_1:84363453-84363472 | Msa0895770:five_prime_UTR | 35.0% |
GATTAATTAATAGTTGGGGG+TGG | - | chr6_1:84363476-84363495 | Msa0895770:five_prime_UTR | 35.0% | |
TCCCTTCTGAATATCATGGT+TGG | - | chr6_1:84359900-84359919 | Msa0895770:three_prime_UTR | 40.0% | |
TCAGAAGATGGAAGTGAAGA+TGG | + | chr6_1:84360307-84360326 | None:intergenic | 40.0% | |
CAAGAAAAAGGCTCAGAAGA+TGG | + | chr6_1:84360319-84360338 | None:intergenic | 40.0% | |
!! | ATCCTCTTTCTTTTTCGCAC+TGG | - | chr6_1:84360420-84360439 | Msa0895770:CDS | 40.0% |
!! | TCCTCTTTCTTTTTCGCACT+GGG | - | chr6_1:84360421-84360440 | Msa0895770:CDS | 40.0% |
AATAGATCCAGATGCAGAAG+TGG | - | chr6_1:84360738-84360757 | Msa0895770:CDS | 40.0% | |
! | GATGCATAGAAGAAGGCATA+AGG | - | chr6_1:84360849-84360868 | Msa0895770:CDS | 40.0% |
TCTCTCTTCAATAGCTTCCA+TGG | + | chr6_1:84360877-84360896 | None:intergenic | 40.0% | |
CTAAAGCATGACAAGGATCA+TGG | + | chr6_1:84360954-84360973 | None:intergenic | 40.0% | |
CATGATCCTTGTCATGCTTT+AGG | - | chr6_1:84360952-84360971 | Msa0895770:CDS | 40.0% | |
AGATCACCTAAAGCATGACA+AGG | + | chr6_1:84360961-84360980 | None:intergenic | 40.0% | |
! | CATGCTTTAGGTGATCTTGT+TGG | - | chr6_1:84360964-84360983 | Msa0895770:CDS | 40.0% |
AGATTGCACTGCATAACCTT+TGG | + | chr6_1:84361052-84361071 | None:intergenic | 40.0% | |
CTCAAAACTTGTGGTACTAG+AGG | - | chr6_1:84361087-84361106 | Msa0895770:intron | 40.0% | |
AGAGGTCATTCATGTGATTG+TGG | - | chr6_1:84361105-84361124 | Msa0895770:intron | 40.0% | |
! | ATTGTGGTCGTGTTTTCTCA+AGG | - | chr6_1:84361121-84361140 | Msa0895770:intron | 40.0% |
TCACACTGTTCATTGACAGT+TGG | - | chr6_1:84361630-84361649 | Msa0895770:intron | 40.0% | |
! | ACTGGATTTTCCAAATGGTG+GGG | + | chr6_1:84361951-84361970 | None:intergenic | 40.0% |
! | CACTGGATTTTCCAAATGGT+GGG | + | chr6_1:84361952-84361971 | None:intergenic | 40.0% |
!! | TGGAAAAGGTATCTATCCAC+TGG | + | chr6_1:84361969-84361988 | None:intergenic | 40.0% |
AATCACACACATGGATGAAG+AGG | + | chr6_1:84362167-84362186 | None:intergenic | 40.0% | |
CATCAAGATGCTTGCAACAT+GGG | - | chr6_1:84362456-84362475 | Msa0895770:CDS | 40.0% | |
GTTCTTGATAAGCATGCAGT+TGG | + | chr6_1:84362519-84362538 | None:intergenic | 40.0% | |
ATACATGTCCATGGCAAACA+AGG | - | chr6_1:84362577-84362596 | Msa0895770:CDS | 40.0% | |
ACTTCTACTCCATCCAAACT+TGG | - | chr6_1:84362707-84362726 | Msa0895770:CDS | 40.0% | |
GTTGAAGTTCCAAGTTTGGA+TGG | + | chr6_1:84362719-84362738 | None:intergenic | 40.0% | |
GAGAGTTGAAGTTCCAAGTT+TGG | + | chr6_1:84362723-84362742 | None:intergenic | 40.0% | |
GTACCAACACTTCTGATTGA+AGG | + | chr6_1:84362786-84362805 | None:intergenic | 40.0% | |
!! | AATCAGAAGTGTTGGTACTG+TGG | - | chr6_1:84362788-84362807 | Msa0895770:intron | 40.0% |
AGGCTATTCAGAAGGTTAAC+CGG | - | chr6_1:84362811-84362830 | Msa0895770:intron | 40.0% | |
ACTCAGTTGCATCTCTCAAT+AGG | - | chr6_1:84362837-84362856 | Msa0895770:intron | 40.0% | |
CTCAGTTGCATCTCTCAATA+GGG | - | chr6_1:84362838-84362857 | Msa0895770:intron | 40.0% | |
!! | CAAACAACATGGCTTTGTTG+AGG | - | chr6_1:84362967-84362986 | Msa0895770:intron | 40.0% |
AAGCTTATGCTGAAGAAGCA+AGG | - | chr6_1:84363036-84363055 | Msa0895770:intron | 40.0% | |
TCTTCTGCCATAACTACTGA+AGG | - | chr6_1:84363269-84363288 | Msa0895770:five_prime_UTR | 40.0% | |
TTCACCACCTTCAGTAGTTA+TGG | + | chr6_1:84363279-84363298 | None:intergenic | 40.0% | |
ACTTGCAGCAGTTTGTGAAA+TGG | - | chr6_1:84363524-84363543 | Msa0895770:five_prime_UTR | 40.0% | |
AAAGCTGAGAGGATACCGAA+AGG | - | chr6_1:84360066-84360085 | Msa0895770:three_prime_UTR | 45.0% | |
AAAAGGAAAAGAAGACCGGC+CGG | - | chr6_1:84360367-84360386 | Msa0895770:CDS | 45.0% | |
AGAAGACAAACCTGGTGTTC+CGG | + | chr6_1:84360389-84360408 | None:intergenic | 45.0% | |
ACCCAGTGCGAAAAAGAAAG+AGG | + | chr6_1:84360425-84360444 | None:intergenic | 45.0% | |
!! | CTTTCTTTTTCGCACTGGGT+CGG | - | chr6_1:84360425-84360444 | Msa0895770:CDS | 45.0% |
!! | TTTCTTTTTCGCACTGGGTC+GGG | - | chr6_1:84360426-84360445 | Msa0895770:CDS | 45.0% |
GTATGTGAGATCTGCAACCA+AGG | - | chr6_1:84360802-84360821 | Msa0895770:CDS | 45.0% | |
TCTGCAACCAAGGATTCCAA+AGG | - | chr6_1:84360812-84360831 | Msa0895770:CDS | 45.0% | |
CTGCAACCAAGGATTCCAAA+GGG | - | chr6_1:84360813-84360832 | Msa0895770:CDS | 45.0% | |
!! | TTTGGTCCCTTTGGAATCCT+TGG | + | chr6_1:84360822-84360841 | None:intergenic | 45.0% |
! | GAAGAAGGCATAAGGTACCA+TGG | - | chr6_1:84360857-84360876 | Msa0895770:CDS | 45.0% |
!! | TGGTGCAAACAAGTTGGTTC+AGG | + | chr6_1:84360934-84360953 | None:intergenic | 45.0% |
GGATCATGGTGCAAACAAGT+TGG | + | chr6_1:84360940-84360959 | None:intergenic | 45.0% | |
!! | GATTTTCCAAATGGTGGGGT+GGG | + | chr6_1:84361947-84361966 | None:intergenic | 45.0% |
! | CCACTGGATTTTCCAAATGG+TGG | + | chr6_1:84361953-84361972 | None:intergenic | 45.0% |
CCACCATTTGGAAAATCCAG+TGG | - | chr6_1:84361950-84361969 | Msa0895770:intron | 45.0% | |
GCATCAAGATGCTTGCAACA+TGG | - | chr6_1:84362455-84362474 | Msa0895770:CDS | 45.0% | |
AAGATGCTTGCAACATGGGA+AGG | - | chr6_1:84362460-84362479 | Msa0895770:CDS | 45.0% | |
! | CATGCAGTTGGTGTTTGAAG+TGG | + | chr6_1:84362507-84362526 | None:intergenic | 45.0% |
!! | AGTCGTGTTGGTGTTGTTTG+TGG | + | chr6_1:84362748-84362767 | None:intergenic | 45.0% |
! | ACGCCTTCAATCAGAAGTGT+TGG | - | chr6_1:84362780-84362799 | Msa0895770:intron | 45.0% |
TACTGTGGAGGCTATTCAGA+AGG | - | chr6_1:84362803-84362822 | Msa0895770:intron | 45.0% | |
! | AGAGATGCAACTGAGTTGAC+CGG | + | chr6_1:84362833-84362852 | None:intergenic | 45.0% |
GAGGGTTCAAGAACAAGCAA+AGG | - | chr6_1:84362986-84363005 | Msa0895770:intron | 45.0% | |
GGAACAATTAAGGGTAGCTG+TGG | - | chr6_1:84363007-84363026 | Msa0895770:intron | 45.0% | |
TCTGCCATAACTACTGAAGG+TGG | - | chr6_1:84363272-84363291 | Msa0895770:five_prime_UTR | 45.0% | |
!!! | TACATTTTTTTTTTATATTA+AGG | + | chr6_1:84361590-84361609 | None:intergenic | 5.0% |
!!! | ATTTATATATATTTTTTGTA+GGG | - | chr6_1:84362416-84362435 | Msa0895770:CDS | 5.0% |
GGAGGAGAAGAAGACAAACC+TGG | + | chr6_1:84360397-84360416 | None:intergenic | 50.0% | |
AGAGACACCACTTCTGCATC+TGG | + | chr6_1:84360748-84360767 | None:intergenic | 50.0% | |
AGCAACGGAAAACGGAGCAT+TGG | + | chr6_1:84361668-84361687 | None:intergenic | 50.0% | |
!! | GGATTTTCCAAATGGTGGGG+TGG | + | chr6_1:84361948-84361967 | None:intergenic | 50.0% |
!! | GCTTGAAGCCTTGTTTGCCA+TGG | + | chr6_1:84362588-84362607 | None:intergenic | 50.0% |
!! | CGTGTTGGTGTTGTTTGTGG+TGG | + | chr6_1:84362745-84362764 | None:intergenic | 50.0% |
GTCTGTTGTCAGAGTCGTGT+TGG | + | chr6_1:84362760-84362779 | None:intergenic | 50.0% | |
!! | CAGAAGTGTTGGTACTGTGG+AGG | - | chr6_1:84362791-84362810 | Msa0895770:intron | 50.0% |
! | AATGGTGGGGTGGGAAGAAG+AGG | + | chr6_1:84361938-84361957 | None:intergenic | 55.0% |
CTTCTTCCCACCCCACCATT+TGG | - | chr6_1:84361938-84361957 | Msa0895770:intron | 55.0% | |
GACAAACCTGGTGTTCCGGC+CGG | + | chr6_1:84360385-84360404 | None:intergenic | 60.0% | |
AGAAGACCGGCCGGAACACC+AGG | - | chr6_1:84360376-84360395 | Msa0895770:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 84359892 | 84363589 | 84359892 | ID=Msa0895770;Name=Msa0895770 |
chr6_1 | mRNA | 84359892 | 84363589 | 84359892 | ID=Msa0895770-mRNA-1;Parent=Msa0895770;Name=Msa0895770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=391|1|1|1|1|1|3|252|471 |
chr6_1 | exon | 84359892 | 84361044 | 84359892 | ID=Msa0895770-mRNA-1:exon:14247;Parent=Msa0895770-mRNA-1 |
chr6_1 | exon | 84362339 | 84362738 | 84362339 | ID=Msa0895770-mRNA-1:exon:14246;Parent=Msa0895770-mRNA-1 |
chr6_1 | exon | 84363084 | 84363589 | 84363084 | ID=Msa0895770-mRNA-1:exon:14245;Parent=Msa0895770-mRNA-1 |
chr6_1 | five_prime_UTR | 84363199 | 84363589 | 84363199 | ID=Msa0895770-mRNA-1:five_prime_utr;Parent=Msa0895770-mRNA-1 |
chr6_1 | CDS | 84363084 | 84363198 | 84363084 | ID=Msa0895770-mRNA-1:cds;Parent=Msa0895770-mRNA-1 |
chr6_1 | CDS | 84362339 | 84362738 | 84362339 | ID=Msa0895770-mRNA-1:cds;Parent=Msa0895770-mRNA-1 |
chr6_1 | CDS | 84360144 | 84361044 | 84360144 | ID=Msa0895770-mRNA-1:cds;Parent=Msa0895770-mRNA-1 |
chr6_1 | three_prime_UTR | 84359892 | 84360143 | 84359892 | ID=Msa0895770-mRNA-1:three_prime_utr;Parent=Msa0895770-mRNA-1 |
Gene Sequence |
Protein sequence |