AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0895890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895890 MtrunA17_Chr6g0479551 88.848 269 24 1 1 269 1 263 2.51e-178 491
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0895890 AT1G18335.3 51.698 265 116 4 3 263 6 262 7.23e-80 242
Msa0895890 AT1G18335.2 51.698 265 116 4 3 263 6 262 7.23e-80 242
Msa0895890 AT1G18335.1 50.936 267 119 4 3 265 6 264 1.76e-79 241

Find 62 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCGAAGCGGCGATAAA+TGG 0.157325 6_1:-84861912 None:intergenic
AATTTCATAAAACCTCTTCT+AGG 0.222593 6_1:+84865857 Msa0895890:three_prime_UTR
CTGTGTATATATTGTTTAAC+AGG 0.288671 6_1:-84863217 None:intergenic
TGTACATTACCGATTTGTTT+TGG 0.337734 6_1:+84864453 Msa0895890:CDS
AGCGTCTCCGAGTTCATTGC+TGG 0.345011 6_1:-84861663 None:intergenic
AAAACCTCTTCTAGGTTTCA+AGG 0.381185 6_1:+84865865 Msa0895890:three_prime_UTR
ATTTCGAAGCGGCGATAAAT+GGG 0.401809 6_1:-84861911 None:intergenic
TATCGCCGCTTCGAAATTAA+CGG 0.410757 6_1:+84861917 Msa0895890:CDS
ATTATAGATAATCAATCTAA+TGG 0.422142 6_1:-84865824 None:intergenic
CGTGTCCAGGGGAAAGGATT+GGG 0.426522 6_1:+84864523 Msa0895890:CDS
ATATATACACAGACTTCTTA+AGG 0.426646 6_1:+84863228 Msa0895890:CDS
CAAAGCAGCATATAGCATAA+AGG 0.436019 6_1:+84861871 Msa0895890:CDS
ACCAAGGGACCACTATCTTC+TGG 0.440378 6_1:-84864424 None:intergenic
ACAGCTCGAGCCTCGTGTCC+AGG 0.444598 6_1:+84864510 Msa0895890:CDS
ACAAATATATAGCGTGCTTC+AGG 0.453405 6_1:-84864328 None:intergenic
ACATACCATTGGATAAACTT+TGG 0.455439 6_1:-84865653 None:intergenic
AAAGGTGAAGCGTATAGAAA+TGG 0.455948 6_1:+84864300 Msa0895890:CDS
CAATCTAATGGTGCACTGAC+TGG 0.467074 6_1:-84865812 None:intergenic
CTTAACATGGAAGGGCCATA+TGG 0.467460 6_1:+84864256 Msa0895890:CDS
GCTTTCCCAATCCTTTCCCC+TGG 0.468580 6_1:-84864528 None:intergenic
CCTCTTCTTCCAAAACAAAT+CGG 0.471830 6_1:-84864462 None:intergenic
AGGATTGGGAAAGCTTCTAA+TGG 0.474839 6_1:+84864537 Msa0895890:CDS
TGAAGCTAAAACTATATTTG+AGG 0.480948 6_1:+84865785 Msa0895890:CDS
GGCGTTGTTGTGAGTTGCAT+TGG 0.483691 6_1:-84861703 None:intergenic
CTCTCAGTGTGTTTAAAGTC+AGG 0.484761 6_1:+84863172 Msa0895890:CDS
TCCAGAAGATAGTGGTCCCT+TGG 0.489622 6_1:+84864423 Msa0895890:CDS
CAGCTCGAGCCTCGTGTCCA+GGG 0.491833 6_1:+84864511 Msa0895890:CDS
GAAGATAGTGGTCCCTTGGT+TGG 0.495248 6_1:+84864427 Msa0895890:CDS
TCTTCTGGAAGATTAGTTGA+AGG 0.500443 6_1:-84864409 None:intergenic
TATTGAGCTTATCGCCCAAA+AGG 0.504926 6_1:+84864564 Msa0895890:CDS
TCTTGCCACTCAGATCCATA+TGG 0.513626 6_1:-84864271 None:intergenic
TCGTGTCCAGGGGAAAGGAT+TGG 0.525244 6_1:+84864522 Msa0895890:CDS
TGAGTGGCAAGAGGAAGAAA+AGG 0.525897 6_1:+84864282 Msa0895890:CDS
ATCTACAGCTTAACATGGAA+GGG 0.529467 6_1:+84864248 Msa0895890:intron
GAGCCTCGTGTCCAGGGGAA+AGG 0.535185 6_1:+84864517 Msa0895890:CDS
AATCTACAGCTTAACATGGA+AGG 0.544882 6_1:+84864247 Msa0895890:intron
ACCATTGGATAAACTTTGGA+AGG 0.553634 6_1:-84865649 None:intergenic
TATATATTGTTTAACAGGAG+AGG 0.553807 6_1:-84863212 None:intergenic
TGTTGTGCTAACTGTTCAAA+AGG 0.560279 6_1:+84864852 Msa0895890:CDS
GACGACAACAGTGTTGATTG+AGG 0.561027 6_1:+84864381 Msa0895890:CDS
ACCTTCCAAAGTTTATCCAA+TGG 0.562113 6_1:+84865648 Msa0895890:CDS
TGTGAGTTGCATTGGTTCCA+CGG 0.567819 6_1:-84861695 None:intergenic
ACTAATCTTCCAGAAGATAG+TGG 0.569548 6_1:+84864415 Msa0895890:CDS
ACGCTATATATTTGTGCATG+AGG 0.569652 6_1:+84864336 Msa0895890:CDS
TAACCTTCTCTCTGTTACGA+CGG 0.587012 6_1:-84861724 None:intergenic
TGTAAAACCAGCAATGAACT+CGG 0.592834 6_1:+84861656 Msa0895890:exon
AATCCTTTCCCCTGGACACG+AGG 0.597062 6_1:-84864520 None:intergenic
CATTGGTTCCACGGTCACGT+TGG 0.600954 6_1:-84861686 None:intergenic
AGCTCGAGCCTCGTGTCCAG+GGG 0.623716 6_1:+84864512 Msa0895890:CDS
AGTTCATACACATAAAGTAC+CGG 0.630714 6_1:-84864487 None:intergenic
AAAACCTTGAAACCTAGAAG+AGG 0.631766 6_1:-84865869 None:intergenic
GTGTGTTTAAAGTCAGGACA+TGG 0.647300 6_1:+84863178 Msa0895890:CDS
GAGACGCTCCAACGTGACCG+TGG 0.649093 6_1:+84861678 Msa0895890:CDS
ATATGGATCTGAGTGGCAAG+AGG 0.653218 6_1:+84864273 Msa0895890:CDS
TCTAAATCTACAGCTTAACA+TGG 0.653637 6_1:+84864243 Msa0895890:intron
TAATGTACAAATCCAACCAA+GGG 0.659606 6_1:-84864439 None:intergenic
ATAAACTTTGGAAGGTGACG+TGG 0.663369 6_1:-84865641 None:intergenic
ACGCCGTCGTAACAGAGAGA+AGG 0.663934 6_1:+84861721 Msa0895890:CDS
GTAATGTACAAATCCAACCA+AGG 0.665929 6_1:-84864440 None:intergenic
AGTTACCGTTAATTTCGAAG+CGG 0.666945 6_1:-84861922 None:intergenic
GATAAATGGGAAAAGAAGCG+AGG 0.710792 6_1:-84861898 None:intergenic
AAGGGCCATATGGATCTGAG+TGG 0.737924 6_1:+84864266 Msa0895890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAAAAAAAAAAA+AGG + chr6_1:84863323-84863342 Msa0895890:intron 0.0%
!! ATATATATAAAAAAAAAAAA+GGG + chr6_1:84863324-84863343 Msa0895890:intron 0.0%
!! GAAATACAATTAAATTAATA+AGG - chr6_1:84865040-84865059 None:intergenic 10.0%
!! ATAAGTTAGTTACAAATTAA+GGG + chr6_1:84862015-84862034 Msa0895890:intron 15.0%
!! TTAATATTTCAACATGATTA+TGG + chr6_1:84863065-84863084 Msa0895890:intron 15.0%
!! CATATCATTAACATAAAAAA+GGG - chr6_1:84864169-84864188 None:intergenic 15.0%
!!! CAATTTATTGATTTATTTAC+AGG + chr6_1:84864757-84864776 Msa0895890:intron 15.0%
!! TGTATTAGACTTATATATAA+GGG + chr6_1:84865188-84865207 Msa0895890:intron 15.0%
!! ATTCTCATAATAAAAAGTTA+AGG + chr6_1:84865391-84865410 Msa0895890:intron 15.0%
!! TTCATAATTCTCATAATATT+TGG + chr6_1:84865476-84865495 Msa0895890:intron 15.0%
!! ATTATAGATAATCAATCTAA+TGG - chr6_1:84865827-84865846 None:intergenic 15.0%
!! ATTAGTTATAGGATTATGAT+CGG + chr6_1:84861972-84861991 Msa0895890:intron 20.0%
!! CATAAGTTAGTTACAAATTA+AGG + chr6_1:84862014-84862033 Msa0895890:intron 20.0%
!! TAGTGTTTGATAAAAAATAG+CGG + chr6_1:84862521-84862540 Msa0895890:intron 20.0%
!! ATCAATTAAGTTAAACACAA+TGG - chr6_1:84862656-84862675 None:intergenic 20.0%
!!! AAGTTTGTTTATTGAATTAG+CGG - chr6_1:84862877-84862896 None:intergenic 20.0%
!! TAACTACATTACTAAATTAC+AGG + chr6_1:84862996-84863015 Msa0895890:intron 20.0%
!!! ATTATAGTCTTAGAAACTAT+AGG - chr6_1:84863040-84863059 None:intergenic 20.0%
!! ATATATACATTTCAGTTAGA+GGG - chr6_1:84863519-84863538 None:intergenic 20.0%
!! ATTTGTTTATACTATCATGA+GGG + chr6_1:84864087-84864106 Msa0895890:intron 20.0%
!! GCATATCATTAACATAAAAA+AGG - chr6_1:84864170-84864189 None:intergenic 20.0%
!!! TTAGACAAGTTAAGTTTTTT+TGG - chr6_1:84864228-84864247 None:intergenic 20.0%
!! TATCAAAGATCATATTAGAT+GGG - chr6_1:84864797-84864816 None:intergenic 20.0%
!! ATATCAAAGATCATATTAGA+TGG - chr6_1:84864798-84864817 None:intergenic 20.0%
!!! ATTTTTACACTAGTAAACTA+AGG + chr6_1:84864893-84864912 Msa0895890:CDS 20.0%
!! AGAGATAAAAAATTCAATGA+TGG - chr6_1:84864940-84864959 None:intergenic 20.0%
!! GTGTATTAGACTTATATATA+AGG + chr6_1:84865187-84865206 Msa0895890:intron 20.0%
!! ATGAAAGTAGAAAATAGAAA+CGG - chr6_1:84865436-84865455 None:intergenic 20.0%
!! GAATTATGAAAGTAGAAAAT+AGG - chr6_1:84865466-84865485 None:intergenic 20.0%
!! GAAAAATCTAGAAAGTAATT+AGG - chr6_1:84865533-84865552 None:intergenic 20.0%
!! ACAAAGACTAAACATAAAAA+GGG - chr6_1:84865576-84865595 None:intergenic 20.0%
!! AACAAAGACTAAACATAAAA+AGG - chr6_1:84865577-84865596 None:intergenic 20.0%
!!! TTTAGTCTTTGTTTTATTGA+CGG + chr6_1:84865584-84865603 Msa0895890:intron 20.0%
!! AATGCAGTTAGATTAGTTAT+AGG + chr6_1:84861961-84861980 Msa0895890:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG + chr6_1:84862359-84862378 Msa0895890:intron 25.0%
! ATTTATTTGAGCTTATCTAC+TGG - chr6_1:84862474-84862493 None:intergenic 25.0%
!! CTTATGAAATTTGAAGTGTT+TGG + chr6_1:84862598-84862617 Msa0895890:intron 25.0%
! TTCTTTCAATTAAGACAATG+AGG + chr6_1:84862734-84862753 Msa0895890:intron 25.0%
! TCTTTCAATTAAGACAATGA+GGG + chr6_1:84862735-84862754 Msa0895890:intron 25.0%
!! ATTTAGACACTCATCATTTT+AGG - chr6_1:84862833-84862852 None:intergenic 25.0%
! TAATGTAGTTAGTACAAGTT+GGG - chr6_1:84862987-84863006 None:intergenic 25.0%
!!! ATAATTTTGACCTTATTTCC+AGG + chr6_1:84863148-84863167 Msa0895890:intron 25.0%
! TATATATTGTTTAACAGGAG+AGG - chr6_1:84863215-84863234 None:intergenic 25.0%
! CTGTGTATATATTGTTTAAC+AGG - chr6_1:84863220-84863239 None:intergenic 25.0%
! ATATATACACAGACTTCTTA+AGG + chr6_1:84863228-84863247 Msa0895890:CDS 25.0%
! TAAGTAACTCTAGTATTGTT+TGG - chr6_1:84863292-84863311 None:intergenic 25.0%
! TATATACATTTCAGTTAGAG+GGG - chr6_1:84863518-84863537 None:intergenic 25.0%
! CATATATACATTTCAGTTAG+AGG - chr6_1:84863520-84863539 None:intergenic 25.0%
!! ACAATTATACTTGTTGAGTA+TGG + chr6_1:84863552-84863571 Msa0895890:intron 25.0%
!! TTACAATGAAGATGCATTTT+TGG - chr6_1:84864014-84864033 None:intergenic 25.0%
! CATTTGTTTATACTATCATG+AGG + chr6_1:84864086-84864105 Msa0895890:intron 25.0%
! TTTCAATGAATAAGCTAACT+CGG - chr6_1:84864193-84864212 None:intergenic 25.0%
!! AGTTAGCTTATTCATTGAAA+TGG + chr6_1:84864193-84864212 Msa0895890:intron 25.0%
!! GTTAGCTTATTCATTGAAAT+GGG + chr6_1:84864194-84864213 Msa0895890:intron 25.0%
! GAATTATTGTTATGTTGCAA+AGG + chr6_1:84864636-84864655 Msa0895890:intron 25.0%
! TCAAGTTTGATATGAATGAA+AGG + chr6_1:84864975-84864994 Msa0895890:intron 25.0%
! CAAGTTTGATATGAATGAAA+GGG + chr6_1:84864976-84864995 Msa0895890:intron 25.0%
!!! ATATTTTCTGGAATGCATTA+AGG - chr6_1:84865065-84865084 None:intergenic 25.0%
!! AAAAGCAGAGAAATATTTTC+TGG - chr6_1:84865077-84865096 None:intergenic 25.0%
! ACAGAATATAGTTATACATG+TGG - chr6_1:84865167-84865186 None:intergenic 25.0%
! TGAAGCTAAAACTATATTTG+AGG + chr6_1:84865785-84865804 Msa0895890:CDS 25.0%
! AATTTCATAAAACCTCTTCT+AGG + chr6_1:84865857-84865876 Msa0895890:three_prime_UTR 25.0%
TTCAAAAAAACTCGTGAATG+AGG - chr6_1:84861789-84861808 None:intergenic 30.0%
! TTACAAATTAAGGGCTTGTT+TGG + chr6_1:84862024-84862043 Msa0895890:intron 30.0%
! AAGTTTTCCAATACAGCTTA+CGG + chr6_1:84862126-84862145 Msa0895890:intron 30.0%
ACGAAATAAGTTGTTTATCC+AGG - chr6_1:84862292-84862311 None:intergenic 30.0%
ATCAATCCAAACAGATCATT+AGG + chr6_1:84862492-84862511 Msa0895890:intron 30.0%
! TGGGTGTAGCTTAAATTTTT+GGG - chr6_1:84862968-84862987 None:intergenic 30.0%
! TTGGGTGTAGCTTAAATTTT+TGG - chr6_1:84862969-84862988 None:intergenic 30.0%
GTAATGTAGTTAGTACAAGT+TGG - chr6_1:84862988-84863007 None:intergenic 30.0%
AAAAAAAAAAAAGGGCAACC+CGG + chr6_1:84863332-84863351 Msa0895890:intron 30.0%
TAAATAAACGCAGACAAGAA+CGG - chr6_1:84863887-84863906 None:intergenic 30.0%
TTTATCTGTTTGTGTAGAGT+TGG + chr6_1:84863903-84863922 Msa0895890:intron 30.0%
TTATCTGTTTGTGTAGAGTT+GGG + chr6_1:84863904-84863923 Msa0895890:intron 30.0%
TACGACAATCATGAACAAAA+GGG - chr6_1:84863973-84863992 None:intergenic 30.0%
TTACGACAATCATGAACAAA+AGG - chr6_1:84863974-84863993 None:intergenic 30.0%
TTGTTCATGATTGTCGTAAT+TGG + chr6_1:84863975-84863994 Msa0895890:intron 30.0%
TTCAATGAATAAGCTAACTC+GGG - chr6_1:84864192-84864211 None:intergenic 30.0%
TCTAAATCTACAGCTTAACA+TGG + chr6_1:84864243-84864262 Msa0895890:intron 30.0%
TAATGTACAAATCCAACCAA+GGG - chr6_1:84864442-84864461 None:intergenic 30.0%
!!! TGTACATTACCGATTTGTTT+TGG + chr6_1:84864453-84864472 Msa0895890:CDS 30.0%
AGTTCATACACATAAAGTAC+CGG - chr6_1:84864490-84864509 None:intergenic 30.0%
!! AACACCATAAAGTACCTTTT+GGG - chr6_1:84864581-84864600 None:intergenic 30.0%
!! AAACACCATAAAGTACCTTT+TGG - chr6_1:84864582-84864601 None:intergenic 30.0%
TCTTCTTGTAGACATATATG+CGG - chr6_1:84865117-84865136 None:intergenic 30.0%
CAAATAACTATGTGATGCTA+GGG - chr6_1:84865222-84865241 None:intergenic 30.0%
TAATAATGATTGACATGTCG+AGG - chr6_1:84865251-84865270 None:intergenic 30.0%
AAAAAGTTAAGGATCTTTGC+AGG + chr6_1:84865402-84865421 Msa0895890:intron 30.0%
GATATCTTCACAGATAACTT+GGG - chr6_1:84865508-84865527 None:intergenic 30.0%
TGATATCTTCACAGATAACT+TGG - chr6_1:84865509-84865528 None:intergenic 30.0%
AGACTAAACATAAAAAGGGA+GGG - chr6_1:84865572-84865591 None:intergenic 30.0%
AAGACTAAACATAAAAAGGG+AGG - chr6_1:84865573-84865592 None:intergenic 30.0%
ACATACCATTGGATAAACTT+TGG - chr6_1:84865656-84865675 None:intergenic 30.0%
! TTTCACCATACTTACGATTT+TGG - chr6_1:84865686-84865705 None:intergenic 30.0%
TGTAAAACCAGCAATGAACT+CGG + chr6_1:84861656-84861675 Msa0895890:exon 35.0%
CAAAGCAGCATATAGCATAA+AGG + chr6_1:84861871-84861890 Msa0895890:CDS 35.0%
AGTTACCGTTAATTTCGAAG+CGG - chr6_1:84861925-84861944 None:intergenic 35.0%
! AATTAAGGGCTTGTTTGGAT+TGG + chr6_1:84862029-84862048 Msa0895890:intron 35.0%
!! TGGATTGGTTTATTTGAGCA+TGG + chr6_1:84862044-84862063 Msa0895890:intron 35.0%
!! GGATTGGTTTATTTGAGCAT+GGG + chr6_1:84862045-84862064 Msa0895890:intron 35.0%
TGTGATATATGCTGCACATA+AGG + chr6_1:84862237-84862256 Msa0895890:intron 35.0%
CATAAGGTCTTTATCCAAAC+TGG + chr6_1:84862253-84862272 Msa0895890:intron 35.0%
ACAAAGCCTAATGATCTGTT+TGG - chr6_1:84862501-84862520 None:intergenic 35.0%
ACCAAACTGCTAACTTATAG+CGG - chr6_1:84862796-84862815 None:intergenic 35.0%
! GGGTGTAGCTTAAATTTTTG+GGG - chr6_1:84862967-84862986 None:intergenic 35.0%
ACATCCTCTTGTGTAAAACA+GGG - chr6_1:84863429-84863448 None:intergenic 35.0%
AACATCCTCTTGTGTAAAAC+AGG - chr6_1:84863430-84863449 None:intergenic 35.0%
TTACACAAGAGGATGTTTAC+AGG + chr6_1:84863433-84863452 Msa0895890:intron 35.0%
TTGAGTATGGCTCAAATTCA+CGG + chr6_1:84863565-84863584 Msa0895890:intron 35.0%
! GTTTTCCAATAATGCAATGC+TGG - chr6_1:84863810-84863829 None:intergenic 35.0%
GGAAAACTACAACAGTCATT+CGG + chr6_1:84863823-84863842 Msa0895890:intron 35.0%
AGCTTATTCATTGAAATGGG+TGG + chr6_1:84864197-84864216 Msa0895890:intron 35.0%
GCTTATTCATTGAAATGGGT+GGG + chr6_1:84864198-84864217 Msa0895890:intron 35.0%
AATCTACAGCTTAACATGGA+AGG + chr6_1:84864247-84864266 Msa0895890:intron 35.0%
ATCTACAGCTTAACATGGAA+GGG + chr6_1:84864248-84864267 Msa0895890:intron 35.0%
AAAGGTGAAGCGTATAGAAA+TGG + chr6_1:84864300-84864319 Msa0895890:CDS 35.0%
ACAAATATATAGCGTGCTTC+AGG - chr6_1:84864331-84864350 None:intergenic 35.0%
ACGCTATATATTTGTGCATG+AGG + chr6_1:84864336-84864355 Msa0895890:CDS 35.0%
! TCTTCTGGAAGATTAGTTGA+AGG - chr6_1:84864412-84864431 None:intergenic 35.0%
ACTAATCTTCCAGAAGATAG+TGG + chr6_1:84864415-84864434 Msa0895890:CDS 35.0%
GTAATGTACAAATCCAACCA+AGG - chr6_1:84864443-84864462 None:intergenic 35.0%
CCTCTTCTTCCAAAACAAAT+CGG - chr6_1:84864465-84864484 None:intergenic 35.0%
AAGGACACAACTTATAGTCT+AGG + chr6_1:84864655-84864674 Msa0895890:intron 35.0%
AGGACACAACTTATAGTCTA+GGG + chr6_1:84864656-84864675 Msa0895890:intron 35.0%
! ACTTTTCTTGTAGAACTGCA+TGG + chr6_1:84864825-84864844 Msa0895890:intron 35.0%
! CTTTTCTTGTAGAACTGCAT+GGG + chr6_1:84864826-84864845 Msa0895890:intron 35.0%
TGTTGTGCTAACTGTTCAAA+AGG + chr6_1:84864852-84864871 Msa0895890:CDS 35.0%
GGCTTATACAAAAGCAGTTA+GGG - chr6_1:84865019-84865038 None:intergenic 35.0%
AGGCTTATACAAAAGCAGTT+AGG - chr6_1:84865020-84865039 None:intergenic 35.0%
!! ATATTTCTCTGCTTTTGAGC+AGG + chr6_1:84865081-84865100 Msa0895890:intron 35.0%
GCAAATAACTATGTGATGCT+AGG - chr6_1:84865223-84865242 None:intergenic 35.0%
GACTAAACATAAAAAGGGAG+GGG - chr6_1:84865571-84865590 None:intergenic 35.0%
ACCTTCCAAAGTTTATCCAA+TGG + chr6_1:84865648-84865667 Msa0895890:CDS 35.0%
ACCATTGGATAAACTTTGGA+AGG - chr6_1:84865652-84865671 None:intergenic 35.0%
! ACCATACTTACGATTTTGGA+GGG - chr6_1:84865682-84865701 None:intergenic 35.0%
TTTCTGTTCTCATATGCAGA+TGG + chr6_1:84865725-84865744 Msa0895890:intron 35.0%
AAAACCTCTTCTAGGTTTCA+AGG + chr6_1:84865865-84865884 Msa0895890:three_prime_UTR 35.0%
AAAACCTTGAAACCTAGAAG+AGG - chr6_1:84865872-84865891 None:intergenic 35.0%
TAACCTTCTCTCTGTTACGA+CGG - chr6_1:84861727-84861746 None:intergenic 40.0%
CGTGAATGAGGAAAGTTTAG+AGG - chr6_1:84861777-84861796 None:intergenic 40.0%
CTTTGCGAGAAGCTGAAAAA+CGG - chr6_1:84861828-84861847 None:intergenic 40.0%
GATAAATGGGAAAAGAAGCG+AGG - chr6_1:84861901-84861920 None:intergenic 40.0%
ATTTCGAAGCGGCGATAAAT+GGG - chr6_1:84861914-84861933 None:intergenic 40.0%
AATTTCGAAGCGGCGATAAA+TGG - chr6_1:84861915-84861934 None:intergenic 40.0%
TATCGCCGCTTCGAAATTAA+CGG + chr6_1:84861917-84861936 Msa0895890:CDS 40.0%
! GTTGTTTCCGTAAGCTGTAT+TGG - chr6_1:84862136-84862155 None:intergenic 40.0%
! AAGCACTTAGGATGTTGCTT+GGG - chr6_1:84862448-84862467 None:intergenic 40.0%
TAAGCACTTAGGATGTTGCT+TGG - chr6_1:84862449-84862468 None:intergenic 40.0%
ATCTACTGGCATAAGCACTT+AGG - chr6_1:84862460-84862479 None:intergenic 40.0%
TCCGCTATAAGTTAGCAGTT+TGG + chr6_1:84862792-84862811 Msa0895890:intron 40.0%
!! TCATCATTTTAGGCTCTGGT+TGG - chr6_1:84862823-84862842 None:intergenic 40.0%
! ACACTCATCATTTTAGGCTC+TGG - chr6_1:84862827-84862846 None:intergenic 40.0%
TTTAAACACACTGAGAGACC+TGG - chr6_1:84863169-84863188 None:intergenic 40.0%
! CTCTCAGTGTGTTTAAAGTC+AGG + chr6_1:84863172-84863191 Msa0895890:CDS 40.0%
! GTGTGTTTAAAGTCAGGACA+TGG + chr6_1:84863178-84863197 Msa0895890:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - chr6_1:84863398-84863417 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - chr6_1:84863424-84863443 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG + chr6_1:84863422-84863441 Msa0895890:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr6_1:84863473-84863492 None:intergenic 40.0%
TAGATCGTAGTCATAACCCT+AGG - chr6_1:84863679-84863698 None:intergenic 40.0%
GTTATGACTACGATCTACGA+GGG + chr6_1:84863682-84863701 Msa0895890:intron 40.0%
AAACTGTACCATGACCATGA+GGG - chr6_1:84863728-84863747 None:intergenic 40.0%
TAAACTGTACCATGACCATG+AGG - chr6_1:84863729-84863748 None:intergenic 40.0%
TCATGGTCATGGTACAGTTT+AGG + chr6_1:84863728-84863747 Msa0895890:intron 40.0%
CATGGTCATGGTACAGTTTA+GGG + chr6_1:84863729-84863748 Msa0895890:intron 40.0%
ATGGTCATGGTACAGTTTAG+GGG + chr6_1:84863730-84863749 Msa0895890:intron 40.0%
AGCTTCCAGCATTGCATTAT+TGG + chr6_1:84863802-84863821 Msa0895890:intron 40.0%
! CATTCGGTTGTTTGAGATGT+AGG + chr6_1:84863839-84863858 Msa0895890:intron 40.0%
! GTTTGAGATGTAGGCACAAT+TGG + chr6_1:84863848-84863867 Msa0895890:intron 40.0%
ACAAGAACGGACATGGAATT+CGG - chr6_1:84863874-84863893 None:intergenic 40.0%
TTTGTGTAGAGTTGGGTTTG+CGG + chr6_1:84863911-84863930 Msa0895890:intron 40.0%
AGATATCTCTCGTGACTCTT+GGG - chr6_1:84863941-84863960 None:intergenic 40.0%
TAGATATCTCTCGTGACTCT+TGG - chr6_1:84863942-84863961 None:intergenic 40.0%
! GTTTTTGCCTTGAAATCTCG+TGG + chr6_1:84864132-84864151 Msa0895890:intron 40.0%
!!! CCGATTTGTTTTGGAAGAAG+AGG + chr6_1:84864462-84864481 Msa0895890:CDS 40.0%
!!! TGTTTTGGAAGAAGAGGTAC+CGG + chr6_1:84864468-84864487 Msa0895890:CDS 40.0%
AGGATTGGGAAAGCTTCTAA+TGG + chr6_1:84864537-84864556 Msa0895890:CDS 40.0%
TATTGAGCTTATCGCCCAAA+AGG + chr6_1:84864564-84864583 Msa0895890:CDS 40.0%
!! ATCGCCCAAAAGGTACTTTA+TGG + chr6_1:84864574-84864593 Msa0895890:intron 40.0%
TGTAGACATATATGCGGTTC+AGG - chr6_1:84865111-84865130 None:intergenic 40.0%
! ATAAACTTTGGAAGGTGACG+TGG - chr6_1:84865644-84865663 None:intergenic 40.0%
!! CATACTTACGATTTTGGAGG+GGG - chr6_1:84865680-84865699 None:intergenic 40.0%
!! CCATACTTACGATTTTGGAG+GGG - chr6_1:84865681-84865700 None:intergenic 40.0%
! CACCATACTTACGATTTTGG+AGG - chr6_1:84865683-84865702 None:intergenic 40.0%
!! TGTGAGTTGCATTGGTTCCA+CGG - chr6_1:84861698-84861717 None:intergenic 45.0%
GAGAAGCTGAAAAACGGAAC+GGG - chr6_1:84861822-84861841 None:intergenic 45.0%
CGAGAAGCTGAAAAACGGAA+CGG - chr6_1:84861823-84861842 None:intergenic 45.0%
TTTATCCAGGCAGAGACTTC+GGG - chr6_1:84862279-84862298 None:intergenic 45.0%
GTTTATCCAGGCAGAGACTT+CGG - chr6_1:84862280-84862299 None:intergenic 45.0%
CACTGAGAGACCTGGAAATA+AGG - chr6_1:84863161-84863180 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - chr6_1:84863399-84863418 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr6_1:84863402-84863421 None:intergenic 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr6_1:84863466-84863485 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr6_1:84863467-84863486 None:intergenic 45.0%
TTCAGTTAGAGGGGTAACCT+TGG - chr6_1:84863509-84863528 None:intergenic 45.0%
GGCTCAAATTCACGGATAAG+TGG + chr6_1:84863573-84863592 Msa0895890:intron 45.0%
GATCTGTAAGCGCAATGTAG+TGG + chr6_1:84863620-84863639 Msa0895890:intron 45.0%
TAGGAATGAGCCATGCTCAA+AGG - chr6_1:84863660-84863679 None:intergenic 45.0%
TTTGAGCATGGCTCATTCCT+AGG + chr6_1:84863659-84863678 Msa0895890:intron 45.0%
TTGAGCATGGCTCATTCCTA+GGG + chr6_1:84863660-84863679 Msa0895890:intron 45.0%
GGTTATGACTACGATCTACG+AGG + chr6_1:84863681-84863700 Msa0895890:intron 45.0%
GTGTGATCCACGAGATTTCA+AGG - chr6_1:84864142-84864161 None:intergenic 45.0%
CTTAACATGGAAGGGCCATA+TGG + chr6_1:84864256-84864275 Msa0895890:CDS 45.0%
TCTTGCCACTCAGATCCATA+TGG - chr6_1:84864274-84864293 None:intergenic 45.0%
ATATGGATCTGAGTGGCAAG+AGG + chr6_1:84864273-84864292 Msa0895890:CDS 45.0%
TGAGTGGCAAGAGGAAGAAA+AGG + chr6_1:84864282-84864301 Msa0895890:CDS 45.0%
!! GACGACAACAGTGTTGATTG+AGG + chr6_1:84864381-84864400 Msa0895890:CDS 45.0%
CCCCTCCAAAATCGTAAGTA+TGG + chr6_1:84865678-84865697 Msa0895890:intron 45.0%
! CAATCTAATGGTGCACTGAC+TGG - chr6_1:84865815-84865834 None:intergenic 45.0%
GGCGTTGTTGTGAGTTGCAT+TGG - chr6_1:84861706-84861725 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr6_1:84863489-84863508 Msa0895890:intron 50.0%
ACTCACTATGCTCGAGTGTC+TGG - chr6_1:84863599-84863618 None:intergenic 50.0%
AGACACTCGAGCATAGTGAG+TGG + chr6_1:84863598-84863617 Msa0895890:intron 50.0%
!! GCGCAATGTAGTGGATTGAG+AGG + chr6_1:84863629-84863648 Msa0895890:intron 50.0%
AGAGGTCATGCCTTTGAGCA+TGG + chr6_1:84863647-84863666 Msa0895890:intron 50.0%
ATCTACGAGGGTTGAGAGTG+CGG + chr6_1:84863694-84863713 Msa0895890:intron 50.0%
AACGCAGACAAGAACGGACA+TGG - chr6_1:84863881-84863900 None:intergenic 50.0%
ACTATCATGAGGGCAAGCCT+TGG + chr6_1:84864097-84864116 Msa0895890:intron 50.0%
AAAACCTAGCCGTTGTGCCA+AGG - chr6_1:84864117-84864136 None:intergenic 50.0%
AAGGGCCATATGGATCTGAG+TGG + chr6_1:84864266-84864285 Msa0895890:CDS 50.0%
! TCCAGAAGATAGTGGTCCCT+TGG + chr6_1:84864423-84864442 Msa0895890:CDS 50.0%
ACCAAGGGACCACTATCTTC+TGG - chr6_1:84864427-84864446 None:intergenic 50.0%
! GAAGATAGTGGTCCCTTGGT+TGG + chr6_1:84864427-84864446 Msa0895890:CDS 50.0%
! TTGGAGGGGGTACATACCAT+TGG - chr6_1:84865667-84865686 None:intergenic 50.0%
AGCGTCTCCGAGTTCATTGC+TGG - chr6_1:84861666-84861685 None:intergenic 55.0%
!! CATTGGTTCCACGGTCACGT+TGG - chr6_1:84861689-84861708 None:intergenic 55.0%
ACGCCGTCGTAACAGAGAGA+AGG + chr6_1:84861721-84861740 Msa0895890:CDS 55.0%
ACAAGAGCTCCCGCATATGC+AGG + chr6_1:84863358-84863377 Msa0895890:intron 55.0%
CAAGAGCTCCCGCATATGCA+GGG + chr6_1:84863359-84863378 Msa0895890:intron 55.0%
! TCTACGAGGGTTGAGAGTGC+GGG + chr6_1:84863695-84863714 Msa0895890:intron 55.0%
AATCCTTTCCCCTGGACACG+AGG - chr6_1:84864523-84864542 None:intergenic 55.0%
TCGTGTCCAGGGGAAAGGAT+TGG + chr6_1:84864522-84864541 Msa0895890:CDS 55.0%
CGTGTCCAGGGGAAAGGATT+GGG + chr6_1:84864523-84864542 Msa0895890:CDS 55.0%
GCTTTCCCAATCCTTTCCCC+TGG - chr6_1:84864531-84864550 None:intergenic 55.0%
GCAGAGACTTCGGGCCAGTT+TGG - chr6_1:84862270-84862289 None:intergenic 60.0%
ATGCGGGAGCTCTTGTGCAC+CGG - chr6_1:84863354-84863373 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr6_1:84863370-84863389 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr6_1:84863371-84863390 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr6_1:84863370-84863389 Msa0895890:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr6_1:84863371-84863390 Msa0895890:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr6_1:84863386-84863405 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr6_1:84863500-84863519 None:intergenic 60.0%
! CTACGAGGGTTGAGAGTGCG+GGG + chr6_1:84863696-84863715 Msa0895890:intron 60.0%
! TACGAGGGTTGAGAGTGCGG+GGG + chr6_1:84863697-84863716 Msa0895890:intron 60.0%
GGGCAAAGCCCTCATGGTCA+TGG + chr6_1:84863717-84863736 Msa0895890:intron 60.0%
GAGGGCAAGCCTTGGCACAA+CGG + chr6_1:84864105-84864124 Msa0895890:intron 60.0%
CAAGCCTTGGCACAACGGCT+AGG + chr6_1:84864110-84864129 Msa0895890:intron 60.0%
GAGACGCTCCAACGTGACCG+TGG + chr6_1:84861678-84861697 Msa0895890:CDS 65.0%
ACTGGCCCGAAGTCTCTGCC+TGG + chr6_1:84862271-84862290 Msa0895890:intron 65.0%
TGCGGGAGCTCTTGTGCACC+GGG - chr6_1:84863353-84863372 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr6_1:84863364-84863383 Msa0895890:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr6_1:84863365-84863384 Msa0895890:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr6_1:84863369-84863388 Msa0895890:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr6_1:84863384-84863403 Msa0895890:intron 65.0%
ACAGCTCGAGCCTCGTGTCC+AGG + chr6_1:84864510-84864529 Msa0895890:CDS 65.0%
CAGCTCGAGCCTCGTGTCCA+GGG + chr6_1:84864511-84864530 Msa0895890:CDS 65.0%
AGCTCGAGCCTCGTGTCCAG+GGG + chr6_1:84864512-84864531 Msa0895890:CDS 65.0%
GAGCCTCGTGTCCAGGGGAA+AGG + chr6_1:84864517-84864536 Msa0895890:CDS 65.0%
GTGCGGGGGCAAAGCCCTCA+TGG + chr6_1:84863711-84863730 Msa0895890:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 84861627 84865891 84861627 ID=Msa0895890;Name=Msa0895890
chr6_1 mRNA 84861627 84865891 84861627 ID=Msa0895890-mRNA-1;Parent=Msa0895890;Name=Msa0895890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=42|1|1|1|1|1|7|61|269
chr6_1 exon 84861627 84861758 84861627 ID=Msa0895890-mRNA-1:exon:14285;Parent=Msa0895890-mRNA-1
chr6_1 exon 84861836 84861938 84861836 ID=Msa0895890-mRNA-1:exon:14286;Parent=Msa0895890-mRNA-1
chr6_1 exon 84863170 84863249 84863170 ID=Msa0895890-mRNA-1:exon:14287;Parent=Msa0895890-mRNA-1
chr6_1 exon 84864256 84864585 84864256 ID=Msa0895890-mRNA-1:exon:14288;Parent=Msa0895890-mRNA-1
chr6_1 exon 84864838 84864914 84864838 ID=Msa0895890-mRNA-1:exon:14289;Parent=Msa0895890-mRNA-1
chr6_1 exon 84865627 84865669 84865627 ID=Msa0895890-mRNA-1:exon:14290;Parent=Msa0895890-mRNA-1
chr6_1 exon 84865744 84865891 84865744 ID=Msa0895890-mRNA-1:exon:14291;Parent=Msa0895890-mRNA-1
chr6_1 five_prime_UTR 84861627 84861668 84861627 ID=Msa0895890-mRNA-1:five_prime_utr;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84861669 84861758 84861669 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84861836 84861938 84861836 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84863170 84863249 84863170 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84864256 84864585 84864256 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84864838 84864914 84864838 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84865627 84865669 84865627 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 CDS 84865744 84865830 84865744 ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1
chr6_1 three_prime_UTR 84865831 84865891 84865831 ID=Msa0895890-mRNA-1:three_prime_utr;Parent=Msa0895890-mRNA-1
Gene Sequence

>Msa0895890

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACTCACAACAACGCCGTCGTAACAGAGAGAAGGTTAACACGCAGCGAACTTCTCGCAAAGAAGAACGCAAATGAACAACTCATCAAAGCAGCATATAGCATAAAGGATCACCTCGCTTCTTTTCCCATTTATCGCCGCTTCGAAATTAACGGTCTCTCAGTGTGTTTAAAGTCAGGACATGGCACTAAGCTCTCCTCTCCTGTTAAACAATATATACACAGACTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTATAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGACGACAACAGTGTTGATTGAGGAAGATCCTTCAACTAATCTTCCAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGATTTGTTTTGGAAGAAGAGGTACCGGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTGCATGGGTGCTGTTGTGCTAACTGTTCAAAAGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGATATATCATATCAGCCACGTCACCTTCCAAAGTTTATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAACATTTAATGATGAAGCTAAAACTATATTTGAGGTAAACCAGTCAGTGCACCATTAG

Protein sequence

>Msa0895890

MNSETLQRDRGTNATHNNAVVTERRLTRSELLAKKNANEQLIKAAYSIKDHLASFPIYRRFEINGLSVCLKSGHGTKLSSPVKQYIHRLLKLNMEGPYGSEWQEEEKVKRIEMVDPEARYIFVHEVTNANADETTTVLIEEDPSTNLPEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQKNCMGAVVLTVQKANISAMNFYTSKLRYIISATSPSKVYPMMEKSYEILCRTFNDEAKTIFEVNQSVHH*