Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895890 | XP_024642081.1 | 88.848 | 269 | 24 | 1 | 1 | 269 | 1 | 263 | 2.73e-174 | 491 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895890 | sp|Q568K5|NAA40_DANRE | 34.632 | 231 | 125 | 4 | 23 | 251 | 10 | 216 | 6.54e-31 | 118 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895890 | A0A396HG85 | 88.848 | 269 | 24 | 1 | 1 | 269 | 1 | 263 | 1.30e-174 | 491 |
Gene ID | Type | Classification |
---|---|---|
Msa0895890 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895890 | MtrunA17_Chr6g0479551 | 88.848 | 269 | 24 | 1 | 1 | 269 | 1 | 263 | 2.51e-178 | 491 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0895890 | AT1G18335.3 | 51.698 | 265 | 116 | 4 | 3 | 263 | 6 | 262 | 7.23e-80 | 242 |
Msa0895890 | AT1G18335.2 | 51.698 | 265 | 116 | 4 | 3 | 263 | 6 | 262 | 7.23e-80 | 242 |
Msa0895890 | AT1G18335.1 | 50.936 | 267 | 119 | 4 | 3 | 265 | 6 | 264 | 1.76e-79 | 241 |
Find 62 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTTCGAAGCGGCGATAAA+TGG | 0.157325 | 6_1:-84861912 | None:intergenic |
AATTTCATAAAACCTCTTCT+AGG | 0.222593 | 6_1:+84865857 | Msa0895890:three_prime_UTR |
CTGTGTATATATTGTTTAAC+AGG | 0.288671 | 6_1:-84863217 | None:intergenic |
TGTACATTACCGATTTGTTT+TGG | 0.337734 | 6_1:+84864453 | Msa0895890:CDS |
AGCGTCTCCGAGTTCATTGC+TGG | 0.345011 | 6_1:-84861663 | None:intergenic |
AAAACCTCTTCTAGGTTTCA+AGG | 0.381185 | 6_1:+84865865 | Msa0895890:three_prime_UTR |
ATTTCGAAGCGGCGATAAAT+GGG | 0.401809 | 6_1:-84861911 | None:intergenic |
TATCGCCGCTTCGAAATTAA+CGG | 0.410757 | 6_1:+84861917 | Msa0895890:CDS |
ATTATAGATAATCAATCTAA+TGG | 0.422142 | 6_1:-84865824 | None:intergenic |
CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_1:+84864523 | Msa0895890:CDS |
ATATATACACAGACTTCTTA+AGG | 0.426646 | 6_1:+84863228 | Msa0895890:CDS |
CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6_1:+84861871 | Msa0895890:CDS |
ACCAAGGGACCACTATCTTC+TGG | 0.440378 | 6_1:-84864424 | None:intergenic |
ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_1:+84864510 | Msa0895890:CDS |
ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_1:-84864328 | None:intergenic |
ACATACCATTGGATAAACTT+TGG | 0.455439 | 6_1:-84865653 | None:intergenic |
AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_1:+84864300 | Msa0895890:CDS |
CAATCTAATGGTGCACTGAC+TGG | 0.467074 | 6_1:-84865812 | None:intergenic |
CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_1:+84864256 | Msa0895890:CDS |
GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_1:-84864528 | None:intergenic |
CCTCTTCTTCCAAAACAAAT+CGG | 0.471830 | 6_1:-84864462 | None:intergenic |
AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_1:+84864537 | Msa0895890:CDS |
TGAAGCTAAAACTATATTTG+AGG | 0.480948 | 6_1:+84865785 | Msa0895890:CDS |
GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6_1:-84861703 | None:intergenic |
CTCTCAGTGTGTTTAAAGTC+AGG | 0.484761 | 6_1:+84863172 | Msa0895890:CDS |
TCCAGAAGATAGTGGTCCCT+TGG | 0.489622 | 6_1:+84864423 | Msa0895890:CDS |
CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_1:+84864511 | Msa0895890:CDS |
GAAGATAGTGGTCCCTTGGT+TGG | 0.495248 | 6_1:+84864427 | Msa0895890:CDS |
TCTTCTGGAAGATTAGTTGA+AGG | 0.500443 | 6_1:-84864409 | None:intergenic |
TATTGAGCTTATCGCCCAAA+AGG | 0.504926 | 6_1:+84864564 | Msa0895890:CDS |
TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_1:-84864271 | None:intergenic |
TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_1:+84864522 | Msa0895890:CDS |
TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_1:+84864282 | Msa0895890:CDS |
ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_1:+84864248 | Msa0895890:intron |
GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_1:+84864517 | Msa0895890:CDS |
AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_1:+84864247 | Msa0895890:intron |
ACCATTGGATAAACTTTGGA+AGG | 0.553634 | 6_1:-84865649 | None:intergenic |
TATATATTGTTTAACAGGAG+AGG | 0.553807 | 6_1:-84863212 | None:intergenic |
TGTTGTGCTAACTGTTCAAA+AGG | 0.560279 | 6_1:+84864852 | Msa0895890:CDS |
GACGACAACAGTGTTGATTG+AGG | 0.561027 | 6_1:+84864381 | Msa0895890:CDS |
ACCTTCCAAAGTTTATCCAA+TGG | 0.562113 | 6_1:+84865648 | Msa0895890:CDS |
TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6_1:-84861695 | None:intergenic |
ACTAATCTTCCAGAAGATAG+TGG | 0.569548 | 6_1:+84864415 | Msa0895890:CDS |
ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_1:+84864336 | Msa0895890:CDS |
TAACCTTCTCTCTGTTACGA+CGG | 0.587012 | 6_1:-84861724 | None:intergenic |
TGTAAAACCAGCAATGAACT+CGG | 0.592834 | 6_1:+84861656 | Msa0895890:exon |
AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_1:-84864520 | None:intergenic |
CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_1:-84861686 | None:intergenic |
AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_1:+84864512 | Msa0895890:CDS |
AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_1:-84864487 | None:intergenic |
AAAACCTTGAAACCTAGAAG+AGG | 0.631766 | 6_1:-84865869 | None:intergenic |
GTGTGTTTAAAGTCAGGACA+TGG | 0.647300 | 6_1:+84863178 | Msa0895890:CDS |
GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_1:+84861678 | Msa0895890:CDS |
ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_1:+84864273 | Msa0895890:CDS |
TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_1:+84864243 | Msa0895890:intron |
TAATGTACAAATCCAACCAA+GGG | 0.659606 | 6_1:-84864439 | None:intergenic |
ATAAACTTTGGAAGGTGACG+TGG | 0.663369 | 6_1:-84865641 | None:intergenic |
ACGCCGTCGTAACAGAGAGA+AGG | 0.663934 | 6_1:+84861721 | Msa0895890:CDS |
GTAATGTACAAATCCAACCA+AGG | 0.665929 | 6_1:-84864440 | None:intergenic |
AGTTACCGTTAATTTCGAAG+CGG | 0.666945 | 6_1:-84861922 | None:intergenic |
GATAAATGGGAAAAGAAGCG+AGG | 0.710792 | 6_1:-84861898 | None:intergenic |
AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_1:+84864266 | Msa0895890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATAAAAAAAAAAA+AGG | + | chr6_1:84863323-84863342 | Msa0895890:intron | 0.0% |
!! | ATATATATAAAAAAAAAAAA+GGG | + | chr6_1:84863324-84863343 | Msa0895890:intron | 0.0% |
!! | GAAATACAATTAAATTAATA+AGG | - | chr6_1:84865040-84865059 | None:intergenic | 10.0% |
!! | ATAAGTTAGTTACAAATTAA+GGG | + | chr6_1:84862015-84862034 | Msa0895890:intron | 15.0% |
!! | TTAATATTTCAACATGATTA+TGG | + | chr6_1:84863065-84863084 | Msa0895890:intron | 15.0% |
!! | CATATCATTAACATAAAAAA+GGG | - | chr6_1:84864169-84864188 | None:intergenic | 15.0% |
!!! | CAATTTATTGATTTATTTAC+AGG | + | chr6_1:84864757-84864776 | Msa0895890:intron | 15.0% |
!! | TGTATTAGACTTATATATAA+GGG | + | chr6_1:84865188-84865207 | Msa0895890:intron | 15.0% |
!! | ATTCTCATAATAAAAAGTTA+AGG | + | chr6_1:84865391-84865410 | Msa0895890:intron | 15.0% |
!! | TTCATAATTCTCATAATATT+TGG | + | chr6_1:84865476-84865495 | Msa0895890:intron | 15.0% |
!! | ATTATAGATAATCAATCTAA+TGG | - | chr6_1:84865827-84865846 | None:intergenic | 15.0% |
!! | ATTAGTTATAGGATTATGAT+CGG | + | chr6_1:84861972-84861991 | Msa0895890:intron | 20.0% |
!! | CATAAGTTAGTTACAAATTA+AGG | + | chr6_1:84862014-84862033 | Msa0895890:intron | 20.0% |
!! | TAGTGTTTGATAAAAAATAG+CGG | + | chr6_1:84862521-84862540 | Msa0895890:intron | 20.0% |
!! | ATCAATTAAGTTAAACACAA+TGG | - | chr6_1:84862656-84862675 | None:intergenic | 20.0% |
!!! | AAGTTTGTTTATTGAATTAG+CGG | - | chr6_1:84862877-84862896 | None:intergenic | 20.0% |
!! | TAACTACATTACTAAATTAC+AGG | + | chr6_1:84862996-84863015 | Msa0895890:intron | 20.0% |
!!! | ATTATAGTCTTAGAAACTAT+AGG | - | chr6_1:84863040-84863059 | None:intergenic | 20.0% |
!! | ATATATACATTTCAGTTAGA+GGG | - | chr6_1:84863519-84863538 | None:intergenic | 20.0% |
!! | ATTTGTTTATACTATCATGA+GGG | + | chr6_1:84864087-84864106 | Msa0895890:intron | 20.0% |
!! | GCATATCATTAACATAAAAA+AGG | - | chr6_1:84864170-84864189 | None:intergenic | 20.0% |
!!! | TTAGACAAGTTAAGTTTTTT+TGG | - | chr6_1:84864228-84864247 | None:intergenic | 20.0% |
!! | TATCAAAGATCATATTAGAT+GGG | - | chr6_1:84864797-84864816 | None:intergenic | 20.0% |
!! | ATATCAAAGATCATATTAGA+TGG | - | chr6_1:84864798-84864817 | None:intergenic | 20.0% |
!!! | ATTTTTACACTAGTAAACTA+AGG | + | chr6_1:84864893-84864912 | Msa0895890:CDS | 20.0% |
!! | AGAGATAAAAAATTCAATGA+TGG | - | chr6_1:84864940-84864959 | None:intergenic | 20.0% |
!! | GTGTATTAGACTTATATATA+AGG | + | chr6_1:84865187-84865206 | Msa0895890:intron | 20.0% |
!! | ATGAAAGTAGAAAATAGAAA+CGG | - | chr6_1:84865436-84865455 | None:intergenic | 20.0% |
!! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_1:84865466-84865485 | None:intergenic | 20.0% |
!! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_1:84865533-84865552 | None:intergenic | 20.0% |
!! | ACAAAGACTAAACATAAAAA+GGG | - | chr6_1:84865576-84865595 | None:intergenic | 20.0% |
!! | AACAAAGACTAAACATAAAA+AGG | - | chr6_1:84865577-84865596 | None:intergenic | 20.0% |
!!! | TTTAGTCTTTGTTTTATTGA+CGG | + | chr6_1:84865584-84865603 | Msa0895890:intron | 20.0% |
!! | AATGCAGTTAGATTAGTTAT+AGG | + | chr6_1:84861961-84861980 | Msa0895890:intron | 25.0% |
!!! | GTTGTTTTCATAAGCTATTT+TGG | + | chr6_1:84862359-84862378 | Msa0895890:intron | 25.0% |
! | ATTTATTTGAGCTTATCTAC+TGG | - | chr6_1:84862474-84862493 | None:intergenic | 25.0% |
!! | CTTATGAAATTTGAAGTGTT+TGG | + | chr6_1:84862598-84862617 | Msa0895890:intron | 25.0% |
! | TTCTTTCAATTAAGACAATG+AGG | + | chr6_1:84862734-84862753 | Msa0895890:intron | 25.0% |
! | TCTTTCAATTAAGACAATGA+GGG | + | chr6_1:84862735-84862754 | Msa0895890:intron | 25.0% |
!! | ATTTAGACACTCATCATTTT+AGG | - | chr6_1:84862833-84862852 | None:intergenic | 25.0% |
! | TAATGTAGTTAGTACAAGTT+GGG | - | chr6_1:84862987-84863006 | None:intergenic | 25.0% |
!!! | ATAATTTTGACCTTATTTCC+AGG | + | chr6_1:84863148-84863167 | Msa0895890:intron | 25.0% |
! | TATATATTGTTTAACAGGAG+AGG | - | chr6_1:84863215-84863234 | None:intergenic | 25.0% |
! | CTGTGTATATATTGTTTAAC+AGG | - | chr6_1:84863220-84863239 | None:intergenic | 25.0% |
! | ATATATACACAGACTTCTTA+AGG | + | chr6_1:84863228-84863247 | Msa0895890:CDS | 25.0% |
! | TAAGTAACTCTAGTATTGTT+TGG | - | chr6_1:84863292-84863311 | None:intergenic | 25.0% |
! | TATATACATTTCAGTTAGAG+GGG | - | chr6_1:84863518-84863537 | None:intergenic | 25.0% |
! | CATATATACATTTCAGTTAG+AGG | - | chr6_1:84863520-84863539 | None:intergenic | 25.0% |
!! | ACAATTATACTTGTTGAGTA+TGG | + | chr6_1:84863552-84863571 | Msa0895890:intron | 25.0% |
!! | TTACAATGAAGATGCATTTT+TGG | - | chr6_1:84864014-84864033 | None:intergenic | 25.0% |
! | CATTTGTTTATACTATCATG+AGG | + | chr6_1:84864086-84864105 | Msa0895890:intron | 25.0% |
! | TTTCAATGAATAAGCTAACT+CGG | - | chr6_1:84864193-84864212 | None:intergenic | 25.0% |
!! | AGTTAGCTTATTCATTGAAA+TGG | + | chr6_1:84864193-84864212 | Msa0895890:intron | 25.0% |
!! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_1:84864194-84864213 | Msa0895890:intron | 25.0% |
! | GAATTATTGTTATGTTGCAA+AGG | + | chr6_1:84864636-84864655 | Msa0895890:intron | 25.0% |
! | TCAAGTTTGATATGAATGAA+AGG | + | chr6_1:84864975-84864994 | Msa0895890:intron | 25.0% |
! | CAAGTTTGATATGAATGAAA+GGG | + | chr6_1:84864976-84864995 | Msa0895890:intron | 25.0% |
!!! | ATATTTTCTGGAATGCATTA+AGG | - | chr6_1:84865065-84865084 | None:intergenic | 25.0% |
!! | AAAAGCAGAGAAATATTTTC+TGG | - | chr6_1:84865077-84865096 | None:intergenic | 25.0% |
! | ACAGAATATAGTTATACATG+TGG | - | chr6_1:84865167-84865186 | None:intergenic | 25.0% |
! | TGAAGCTAAAACTATATTTG+AGG | + | chr6_1:84865785-84865804 | Msa0895890:CDS | 25.0% |
! | AATTTCATAAAACCTCTTCT+AGG | + | chr6_1:84865857-84865876 | Msa0895890:three_prime_UTR | 25.0% |
TTCAAAAAAACTCGTGAATG+AGG | - | chr6_1:84861789-84861808 | None:intergenic | 30.0% | |
! | TTACAAATTAAGGGCTTGTT+TGG | + | chr6_1:84862024-84862043 | Msa0895890:intron | 30.0% |
! | AAGTTTTCCAATACAGCTTA+CGG | + | chr6_1:84862126-84862145 | Msa0895890:intron | 30.0% |
ACGAAATAAGTTGTTTATCC+AGG | - | chr6_1:84862292-84862311 | None:intergenic | 30.0% | |
ATCAATCCAAACAGATCATT+AGG | + | chr6_1:84862492-84862511 | Msa0895890:intron | 30.0% | |
! | TGGGTGTAGCTTAAATTTTT+GGG | - | chr6_1:84862968-84862987 | None:intergenic | 30.0% |
! | TTGGGTGTAGCTTAAATTTT+TGG | - | chr6_1:84862969-84862988 | None:intergenic | 30.0% |
GTAATGTAGTTAGTACAAGT+TGG | - | chr6_1:84862988-84863007 | None:intergenic | 30.0% | |
AAAAAAAAAAAAGGGCAACC+CGG | + | chr6_1:84863332-84863351 | Msa0895890:intron | 30.0% | |
TAAATAAACGCAGACAAGAA+CGG | - | chr6_1:84863887-84863906 | None:intergenic | 30.0% | |
TTTATCTGTTTGTGTAGAGT+TGG | + | chr6_1:84863903-84863922 | Msa0895890:intron | 30.0% | |
TTATCTGTTTGTGTAGAGTT+GGG | + | chr6_1:84863904-84863923 | Msa0895890:intron | 30.0% | |
TACGACAATCATGAACAAAA+GGG | - | chr6_1:84863973-84863992 | None:intergenic | 30.0% | |
TTACGACAATCATGAACAAA+AGG | - | chr6_1:84863974-84863993 | None:intergenic | 30.0% | |
TTGTTCATGATTGTCGTAAT+TGG | + | chr6_1:84863975-84863994 | Msa0895890:intron | 30.0% | |
TTCAATGAATAAGCTAACTC+GGG | - | chr6_1:84864192-84864211 | None:intergenic | 30.0% | |
TCTAAATCTACAGCTTAACA+TGG | + | chr6_1:84864243-84864262 | Msa0895890:intron | 30.0% | |
TAATGTACAAATCCAACCAA+GGG | - | chr6_1:84864442-84864461 | None:intergenic | 30.0% | |
!!! | TGTACATTACCGATTTGTTT+TGG | + | chr6_1:84864453-84864472 | Msa0895890:CDS | 30.0% |
AGTTCATACACATAAAGTAC+CGG | - | chr6_1:84864490-84864509 | None:intergenic | 30.0% | |
!! | AACACCATAAAGTACCTTTT+GGG | - | chr6_1:84864581-84864600 | None:intergenic | 30.0% |
!! | AAACACCATAAAGTACCTTT+TGG | - | chr6_1:84864582-84864601 | None:intergenic | 30.0% |
TCTTCTTGTAGACATATATG+CGG | - | chr6_1:84865117-84865136 | None:intergenic | 30.0% | |
CAAATAACTATGTGATGCTA+GGG | - | chr6_1:84865222-84865241 | None:intergenic | 30.0% | |
TAATAATGATTGACATGTCG+AGG | - | chr6_1:84865251-84865270 | None:intergenic | 30.0% | |
AAAAAGTTAAGGATCTTTGC+AGG | + | chr6_1:84865402-84865421 | Msa0895890:intron | 30.0% | |
GATATCTTCACAGATAACTT+GGG | - | chr6_1:84865508-84865527 | None:intergenic | 30.0% | |
TGATATCTTCACAGATAACT+TGG | - | chr6_1:84865509-84865528 | None:intergenic | 30.0% | |
AGACTAAACATAAAAAGGGA+GGG | - | chr6_1:84865572-84865591 | None:intergenic | 30.0% | |
AAGACTAAACATAAAAAGGG+AGG | - | chr6_1:84865573-84865592 | None:intergenic | 30.0% | |
ACATACCATTGGATAAACTT+TGG | - | chr6_1:84865656-84865675 | None:intergenic | 30.0% | |
! | TTTCACCATACTTACGATTT+TGG | - | chr6_1:84865686-84865705 | None:intergenic | 30.0% |
TGTAAAACCAGCAATGAACT+CGG | + | chr6_1:84861656-84861675 | Msa0895890:exon | 35.0% | |
CAAAGCAGCATATAGCATAA+AGG | + | chr6_1:84861871-84861890 | Msa0895890:CDS | 35.0% | |
AGTTACCGTTAATTTCGAAG+CGG | - | chr6_1:84861925-84861944 | None:intergenic | 35.0% | |
! | AATTAAGGGCTTGTTTGGAT+TGG | + | chr6_1:84862029-84862048 | Msa0895890:intron | 35.0% |
!! | TGGATTGGTTTATTTGAGCA+TGG | + | chr6_1:84862044-84862063 | Msa0895890:intron | 35.0% |
!! | GGATTGGTTTATTTGAGCAT+GGG | + | chr6_1:84862045-84862064 | Msa0895890:intron | 35.0% |
TGTGATATATGCTGCACATA+AGG | + | chr6_1:84862237-84862256 | Msa0895890:intron | 35.0% | |
CATAAGGTCTTTATCCAAAC+TGG | + | chr6_1:84862253-84862272 | Msa0895890:intron | 35.0% | |
ACAAAGCCTAATGATCTGTT+TGG | - | chr6_1:84862501-84862520 | None:intergenic | 35.0% | |
ACCAAACTGCTAACTTATAG+CGG | - | chr6_1:84862796-84862815 | None:intergenic | 35.0% | |
! | GGGTGTAGCTTAAATTTTTG+GGG | - | chr6_1:84862967-84862986 | None:intergenic | 35.0% |
ACATCCTCTTGTGTAAAACA+GGG | - | chr6_1:84863429-84863448 | None:intergenic | 35.0% | |
AACATCCTCTTGTGTAAAAC+AGG | - | chr6_1:84863430-84863449 | None:intergenic | 35.0% | |
TTACACAAGAGGATGTTTAC+AGG | + | chr6_1:84863433-84863452 | Msa0895890:intron | 35.0% | |
TTGAGTATGGCTCAAATTCA+CGG | + | chr6_1:84863565-84863584 | Msa0895890:intron | 35.0% | |
! | GTTTTCCAATAATGCAATGC+TGG | - | chr6_1:84863810-84863829 | None:intergenic | 35.0% |
GGAAAACTACAACAGTCATT+CGG | + | chr6_1:84863823-84863842 | Msa0895890:intron | 35.0% | |
AGCTTATTCATTGAAATGGG+TGG | + | chr6_1:84864197-84864216 | Msa0895890:intron | 35.0% | |
GCTTATTCATTGAAATGGGT+GGG | + | chr6_1:84864198-84864217 | Msa0895890:intron | 35.0% | |
AATCTACAGCTTAACATGGA+AGG | + | chr6_1:84864247-84864266 | Msa0895890:intron | 35.0% | |
ATCTACAGCTTAACATGGAA+GGG | + | chr6_1:84864248-84864267 | Msa0895890:intron | 35.0% | |
AAAGGTGAAGCGTATAGAAA+TGG | + | chr6_1:84864300-84864319 | Msa0895890:CDS | 35.0% | |
ACAAATATATAGCGTGCTTC+AGG | - | chr6_1:84864331-84864350 | None:intergenic | 35.0% | |
ACGCTATATATTTGTGCATG+AGG | + | chr6_1:84864336-84864355 | Msa0895890:CDS | 35.0% | |
! | TCTTCTGGAAGATTAGTTGA+AGG | - | chr6_1:84864412-84864431 | None:intergenic | 35.0% |
ACTAATCTTCCAGAAGATAG+TGG | + | chr6_1:84864415-84864434 | Msa0895890:CDS | 35.0% | |
GTAATGTACAAATCCAACCA+AGG | - | chr6_1:84864443-84864462 | None:intergenic | 35.0% | |
CCTCTTCTTCCAAAACAAAT+CGG | - | chr6_1:84864465-84864484 | None:intergenic | 35.0% | |
AAGGACACAACTTATAGTCT+AGG | + | chr6_1:84864655-84864674 | Msa0895890:intron | 35.0% | |
AGGACACAACTTATAGTCTA+GGG | + | chr6_1:84864656-84864675 | Msa0895890:intron | 35.0% | |
! | ACTTTTCTTGTAGAACTGCA+TGG | + | chr6_1:84864825-84864844 | Msa0895890:intron | 35.0% |
! | CTTTTCTTGTAGAACTGCAT+GGG | + | chr6_1:84864826-84864845 | Msa0895890:intron | 35.0% |
TGTTGTGCTAACTGTTCAAA+AGG | + | chr6_1:84864852-84864871 | Msa0895890:CDS | 35.0% | |
GGCTTATACAAAAGCAGTTA+GGG | - | chr6_1:84865019-84865038 | None:intergenic | 35.0% | |
AGGCTTATACAAAAGCAGTT+AGG | - | chr6_1:84865020-84865039 | None:intergenic | 35.0% | |
!! | ATATTTCTCTGCTTTTGAGC+AGG | + | chr6_1:84865081-84865100 | Msa0895890:intron | 35.0% |
GCAAATAACTATGTGATGCT+AGG | - | chr6_1:84865223-84865242 | None:intergenic | 35.0% | |
GACTAAACATAAAAAGGGAG+GGG | - | chr6_1:84865571-84865590 | None:intergenic | 35.0% | |
ACCTTCCAAAGTTTATCCAA+TGG | + | chr6_1:84865648-84865667 | Msa0895890:CDS | 35.0% | |
ACCATTGGATAAACTTTGGA+AGG | - | chr6_1:84865652-84865671 | None:intergenic | 35.0% | |
! | ACCATACTTACGATTTTGGA+GGG | - | chr6_1:84865682-84865701 | None:intergenic | 35.0% |
TTTCTGTTCTCATATGCAGA+TGG | + | chr6_1:84865725-84865744 | Msa0895890:intron | 35.0% | |
AAAACCTCTTCTAGGTTTCA+AGG | + | chr6_1:84865865-84865884 | Msa0895890:three_prime_UTR | 35.0% | |
AAAACCTTGAAACCTAGAAG+AGG | - | chr6_1:84865872-84865891 | None:intergenic | 35.0% | |
TAACCTTCTCTCTGTTACGA+CGG | - | chr6_1:84861727-84861746 | None:intergenic | 40.0% | |
CGTGAATGAGGAAAGTTTAG+AGG | - | chr6_1:84861777-84861796 | None:intergenic | 40.0% | |
CTTTGCGAGAAGCTGAAAAA+CGG | - | chr6_1:84861828-84861847 | None:intergenic | 40.0% | |
GATAAATGGGAAAAGAAGCG+AGG | - | chr6_1:84861901-84861920 | None:intergenic | 40.0% | |
ATTTCGAAGCGGCGATAAAT+GGG | - | chr6_1:84861914-84861933 | None:intergenic | 40.0% | |
AATTTCGAAGCGGCGATAAA+TGG | - | chr6_1:84861915-84861934 | None:intergenic | 40.0% | |
TATCGCCGCTTCGAAATTAA+CGG | + | chr6_1:84861917-84861936 | Msa0895890:CDS | 40.0% | |
! | GTTGTTTCCGTAAGCTGTAT+TGG | - | chr6_1:84862136-84862155 | None:intergenic | 40.0% |
! | AAGCACTTAGGATGTTGCTT+GGG | - | chr6_1:84862448-84862467 | None:intergenic | 40.0% |
TAAGCACTTAGGATGTTGCT+TGG | - | chr6_1:84862449-84862468 | None:intergenic | 40.0% | |
ATCTACTGGCATAAGCACTT+AGG | - | chr6_1:84862460-84862479 | None:intergenic | 40.0% | |
TCCGCTATAAGTTAGCAGTT+TGG | + | chr6_1:84862792-84862811 | Msa0895890:intron | 40.0% | |
!! | TCATCATTTTAGGCTCTGGT+TGG | - | chr6_1:84862823-84862842 | None:intergenic | 40.0% |
! | ACACTCATCATTTTAGGCTC+TGG | - | chr6_1:84862827-84862846 | None:intergenic | 40.0% |
TTTAAACACACTGAGAGACC+TGG | - | chr6_1:84863169-84863188 | None:intergenic | 40.0% | |
! | CTCTCAGTGTGTTTAAAGTC+AGG | + | chr6_1:84863172-84863191 | Msa0895890:CDS | 40.0% |
! | GTGTGTTTAAAGTCAGGACA+TGG | + | chr6_1:84863178-84863197 | Msa0895890:CDS | 40.0% |
CGTACAATACACCAAATGGT+GGG | - | chr6_1:84863398-84863417 | None:intergenic | 40.0% | |
CTCTTGTGTAAAACAGGGTA+AGG | - | chr6_1:84863424-84863443 | None:intergenic | 40.0% | |
! | CTTACCCTGTTTTACACAAG+AGG | + | chr6_1:84863422-84863441 | Msa0895890:intron | 40.0% |
GTTGTTGTCATGTGACTGAA+AGG | - | chr6_1:84863473-84863492 | None:intergenic | 40.0% | |
TAGATCGTAGTCATAACCCT+AGG | - | chr6_1:84863679-84863698 | None:intergenic | 40.0% | |
GTTATGACTACGATCTACGA+GGG | + | chr6_1:84863682-84863701 | Msa0895890:intron | 40.0% | |
AAACTGTACCATGACCATGA+GGG | - | chr6_1:84863728-84863747 | None:intergenic | 40.0% | |
TAAACTGTACCATGACCATG+AGG | - | chr6_1:84863729-84863748 | None:intergenic | 40.0% | |
TCATGGTCATGGTACAGTTT+AGG | + | chr6_1:84863728-84863747 | Msa0895890:intron | 40.0% | |
CATGGTCATGGTACAGTTTA+GGG | + | chr6_1:84863729-84863748 | Msa0895890:intron | 40.0% | |
ATGGTCATGGTACAGTTTAG+GGG | + | chr6_1:84863730-84863749 | Msa0895890:intron | 40.0% | |
AGCTTCCAGCATTGCATTAT+TGG | + | chr6_1:84863802-84863821 | Msa0895890:intron | 40.0% | |
! | CATTCGGTTGTTTGAGATGT+AGG | + | chr6_1:84863839-84863858 | Msa0895890:intron | 40.0% |
! | GTTTGAGATGTAGGCACAAT+TGG | + | chr6_1:84863848-84863867 | Msa0895890:intron | 40.0% |
ACAAGAACGGACATGGAATT+CGG | - | chr6_1:84863874-84863893 | None:intergenic | 40.0% | |
TTTGTGTAGAGTTGGGTTTG+CGG | + | chr6_1:84863911-84863930 | Msa0895890:intron | 40.0% | |
AGATATCTCTCGTGACTCTT+GGG | - | chr6_1:84863941-84863960 | None:intergenic | 40.0% | |
TAGATATCTCTCGTGACTCT+TGG | - | chr6_1:84863942-84863961 | None:intergenic | 40.0% | |
! | GTTTTTGCCTTGAAATCTCG+TGG | + | chr6_1:84864132-84864151 | Msa0895890:intron | 40.0% |
!!! | CCGATTTGTTTTGGAAGAAG+AGG | + | chr6_1:84864462-84864481 | Msa0895890:CDS | 40.0% |
!!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_1:84864468-84864487 | Msa0895890:CDS | 40.0% |
AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_1:84864537-84864556 | Msa0895890:CDS | 40.0% | |
TATTGAGCTTATCGCCCAAA+AGG | + | chr6_1:84864564-84864583 | Msa0895890:CDS | 40.0% | |
!! | ATCGCCCAAAAGGTACTTTA+TGG | + | chr6_1:84864574-84864593 | Msa0895890:intron | 40.0% |
TGTAGACATATATGCGGTTC+AGG | - | chr6_1:84865111-84865130 | None:intergenic | 40.0% | |
! | ATAAACTTTGGAAGGTGACG+TGG | - | chr6_1:84865644-84865663 | None:intergenic | 40.0% |
!! | CATACTTACGATTTTGGAGG+GGG | - | chr6_1:84865680-84865699 | None:intergenic | 40.0% |
!! | CCATACTTACGATTTTGGAG+GGG | - | chr6_1:84865681-84865700 | None:intergenic | 40.0% |
! | CACCATACTTACGATTTTGG+AGG | - | chr6_1:84865683-84865702 | None:intergenic | 40.0% |
!! | TGTGAGTTGCATTGGTTCCA+CGG | - | chr6_1:84861698-84861717 | None:intergenic | 45.0% |
GAGAAGCTGAAAAACGGAAC+GGG | - | chr6_1:84861822-84861841 | None:intergenic | 45.0% | |
CGAGAAGCTGAAAAACGGAA+CGG | - | chr6_1:84861823-84861842 | None:intergenic | 45.0% | |
TTTATCCAGGCAGAGACTTC+GGG | - | chr6_1:84862279-84862298 | None:intergenic | 45.0% | |
GTTTATCCAGGCAGAGACTT+CGG | - | chr6_1:84862280-84862299 | None:intergenic | 45.0% | |
CACTGAGAGACCTGGAAATA+AGG | - | chr6_1:84863161-84863180 | None:intergenic | 45.0% | |
GCGTACAATACACCAAATGG+TGG | - | chr6_1:84863399-84863418 | None:intergenic | 45.0% | |
GCTGCGTACAATACACCAAA+TGG | - | chr6_1:84863402-84863421 | None:intergenic | 45.0% | |
TCATGTGACTGAAAGGTCAC+GGG | - | chr6_1:84863466-84863485 | None:intergenic | 45.0% | |
GTCATGTGACTGAAAGGTCA+CGG | - | chr6_1:84863467-84863486 | None:intergenic | 45.0% | |
TTCAGTTAGAGGGGTAACCT+TGG | - | chr6_1:84863509-84863528 | None:intergenic | 45.0% | |
GGCTCAAATTCACGGATAAG+TGG | + | chr6_1:84863573-84863592 | Msa0895890:intron | 45.0% | |
GATCTGTAAGCGCAATGTAG+TGG | + | chr6_1:84863620-84863639 | Msa0895890:intron | 45.0% | |
TAGGAATGAGCCATGCTCAA+AGG | - | chr6_1:84863660-84863679 | None:intergenic | 45.0% | |
TTTGAGCATGGCTCATTCCT+AGG | + | chr6_1:84863659-84863678 | Msa0895890:intron | 45.0% | |
TTGAGCATGGCTCATTCCTA+GGG | + | chr6_1:84863660-84863679 | Msa0895890:intron | 45.0% | |
GGTTATGACTACGATCTACG+AGG | + | chr6_1:84863681-84863700 | Msa0895890:intron | 45.0% | |
GTGTGATCCACGAGATTTCA+AGG | - | chr6_1:84864142-84864161 | None:intergenic | 45.0% | |
CTTAACATGGAAGGGCCATA+TGG | + | chr6_1:84864256-84864275 | Msa0895890:CDS | 45.0% | |
TCTTGCCACTCAGATCCATA+TGG | - | chr6_1:84864274-84864293 | None:intergenic | 45.0% | |
ATATGGATCTGAGTGGCAAG+AGG | + | chr6_1:84864273-84864292 | Msa0895890:CDS | 45.0% | |
TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_1:84864282-84864301 | Msa0895890:CDS | 45.0% | |
!! | GACGACAACAGTGTTGATTG+AGG | + | chr6_1:84864381-84864400 | Msa0895890:CDS | 45.0% |
CCCCTCCAAAATCGTAAGTA+TGG | + | chr6_1:84865678-84865697 | Msa0895890:intron | 45.0% | |
! | CAATCTAATGGTGCACTGAC+TGG | - | chr6_1:84865815-84865834 | None:intergenic | 45.0% |
GGCGTTGTTGTGAGTTGCAT+TGG | - | chr6_1:84861706-84861725 | None:intergenic | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | + | chr6_1:84863489-84863508 | Msa0895890:intron | 50.0% | |
ACTCACTATGCTCGAGTGTC+TGG | - | chr6_1:84863599-84863618 | None:intergenic | 50.0% | |
AGACACTCGAGCATAGTGAG+TGG | + | chr6_1:84863598-84863617 | Msa0895890:intron | 50.0% | |
!! | GCGCAATGTAGTGGATTGAG+AGG | + | chr6_1:84863629-84863648 | Msa0895890:intron | 50.0% |
AGAGGTCATGCCTTTGAGCA+TGG | + | chr6_1:84863647-84863666 | Msa0895890:intron | 50.0% | |
ATCTACGAGGGTTGAGAGTG+CGG | + | chr6_1:84863694-84863713 | Msa0895890:intron | 50.0% | |
AACGCAGACAAGAACGGACA+TGG | - | chr6_1:84863881-84863900 | None:intergenic | 50.0% | |
ACTATCATGAGGGCAAGCCT+TGG | + | chr6_1:84864097-84864116 | Msa0895890:intron | 50.0% | |
AAAACCTAGCCGTTGTGCCA+AGG | - | chr6_1:84864117-84864136 | None:intergenic | 50.0% | |
AAGGGCCATATGGATCTGAG+TGG | + | chr6_1:84864266-84864285 | Msa0895890:CDS | 50.0% | |
! | TCCAGAAGATAGTGGTCCCT+TGG | + | chr6_1:84864423-84864442 | Msa0895890:CDS | 50.0% |
ACCAAGGGACCACTATCTTC+TGG | - | chr6_1:84864427-84864446 | None:intergenic | 50.0% | |
! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_1:84864427-84864446 | Msa0895890:CDS | 50.0% |
! | TTGGAGGGGGTACATACCAT+TGG | - | chr6_1:84865667-84865686 | None:intergenic | 50.0% |
AGCGTCTCCGAGTTCATTGC+TGG | - | chr6_1:84861666-84861685 | None:intergenic | 55.0% | |
!! | CATTGGTTCCACGGTCACGT+TGG | - | chr6_1:84861689-84861708 | None:intergenic | 55.0% |
ACGCCGTCGTAACAGAGAGA+AGG | + | chr6_1:84861721-84861740 | Msa0895890:CDS | 55.0% | |
ACAAGAGCTCCCGCATATGC+AGG | + | chr6_1:84863358-84863377 | Msa0895890:intron | 55.0% | |
CAAGAGCTCCCGCATATGCA+GGG | + | chr6_1:84863359-84863378 | Msa0895890:intron | 55.0% | |
! | TCTACGAGGGTTGAGAGTGC+GGG | + | chr6_1:84863695-84863714 | Msa0895890:intron | 55.0% |
AATCCTTTCCCCTGGACACG+AGG | - | chr6_1:84864523-84864542 | None:intergenic | 55.0% | |
TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_1:84864522-84864541 | Msa0895890:CDS | 55.0% | |
CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_1:84864523-84864542 | Msa0895890:CDS | 55.0% | |
GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_1:84864531-84864550 | None:intergenic | 55.0% | |
GCAGAGACTTCGGGCCAGTT+TGG | - | chr6_1:84862270-84862289 | None:intergenic | 60.0% | |
ATGCGGGAGCTCTTGTGCAC+CGG | - | chr6_1:84863354-84863373 | None:intergenic | 60.0% | |
TTCCCGGACCCTGCATATGC+GGG | - | chr6_1:84863370-84863389 | None:intergenic | 60.0% | |
CTTCCCGGACCCTGCATATG+CGG | - | chr6_1:84863371-84863390 | None:intergenic | 60.0% | |
GCATATGCAGGGTCCGGGAA+GGG | + | chr6_1:84863370-84863389 | Msa0895890:intron | 60.0% | |
CATATGCAGGGTCCGGGAAG+GGG | + | chr6_1:84863371-84863390 | Msa0895890:intron | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | - | chr6_1:84863386-84863405 | None:intergenic | 60.0% |
AGGGGTAACCTTGGCGCAAC+TGG | - | chr6_1:84863500-84863519 | None:intergenic | 60.0% | |
! | CTACGAGGGTTGAGAGTGCG+GGG | + | chr6_1:84863696-84863715 | Msa0895890:intron | 60.0% |
! | TACGAGGGTTGAGAGTGCGG+GGG | + | chr6_1:84863697-84863716 | Msa0895890:intron | 60.0% |
GGGCAAAGCCCTCATGGTCA+TGG | + | chr6_1:84863717-84863736 | Msa0895890:intron | 60.0% | |
GAGGGCAAGCCTTGGCACAA+CGG | + | chr6_1:84864105-84864124 | Msa0895890:intron | 60.0% | |
CAAGCCTTGGCACAACGGCT+AGG | + | chr6_1:84864110-84864129 | Msa0895890:intron | 60.0% | |
GAGACGCTCCAACGTGACCG+TGG | + | chr6_1:84861678-84861697 | Msa0895890:CDS | 65.0% | |
ACTGGCCCGAAGTCTCTGCC+TGG | + | chr6_1:84862271-84862290 | Msa0895890:intron | 65.0% | |
TGCGGGAGCTCTTGTGCACC+GGG | - | chr6_1:84863353-84863372 | None:intergenic | 65.0% | |
GCTCCCGCATATGCAGGGTC+CGG | + | chr6_1:84863364-84863383 | Msa0895890:intron | 65.0% | |
CTCCCGCATATGCAGGGTCC+GGG | + | chr6_1:84863365-84863384 | Msa0895890:intron | 65.0% | |
CGCATATGCAGGGTCCGGGA+AGG | + | chr6_1:84863369-84863388 | Msa0895890:intron | 65.0% | |
CGGGAAGGGGTCCCACCATT+TGG | + | chr6_1:84863384-84863403 | Msa0895890:intron | 65.0% | |
ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6_1:84864510-84864529 | Msa0895890:CDS | 65.0% | |
CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6_1:84864511-84864530 | Msa0895890:CDS | 65.0% | |
AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6_1:84864512-84864531 | Msa0895890:CDS | 65.0% | |
GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_1:84864517-84864536 | Msa0895890:CDS | 65.0% | |
GTGCGGGGGCAAAGCCCTCA+TGG | + | chr6_1:84863711-84863730 | Msa0895890:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 84861627 | 84865891 | 84861627 | ID=Msa0895890;Name=Msa0895890 |
chr6_1 | mRNA | 84861627 | 84865891 | 84861627 | ID=Msa0895890-mRNA-1;Parent=Msa0895890;Name=Msa0895890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=42|1|1|1|1|1|7|61|269 |
chr6_1 | exon | 84861627 | 84861758 | 84861627 | ID=Msa0895890-mRNA-1:exon:14285;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84861836 | 84861938 | 84861836 | ID=Msa0895890-mRNA-1:exon:14286;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84863170 | 84863249 | 84863170 | ID=Msa0895890-mRNA-1:exon:14287;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84864256 | 84864585 | 84864256 | ID=Msa0895890-mRNA-1:exon:14288;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84864838 | 84864914 | 84864838 | ID=Msa0895890-mRNA-1:exon:14289;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84865627 | 84865669 | 84865627 | ID=Msa0895890-mRNA-1:exon:14290;Parent=Msa0895890-mRNA-1 |
chr6_1 | exon | 84865744 | 84865891 | 84865744 | ID=Msa0895890-mRNA-1:exon:14291;Parent=Msa0895890-mRNA-1 |
chr6_1 | five_prime_UTR | 84861627 | 84861668 | 84861627 | ID=Msa0895890-mRNA-1:five_prime_utr;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84861669 | 84861758 | 84861669 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84861836 | 84861938 | 84861836 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84863170 | 84863249 | 84863170 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84864256 | 84864585 | 84864256 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84864838 | 84864914 | 84864838 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84865627 | 84865669 | 84865627 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | CDS | 84865744 | 84865830 | 84865744 | ID=Msa0895890-mRNA-1:cds;Parent=Msa0895890-mRNA-1 |
chr6_1 | three_prime_UTR | 84865831 | 84865891 | 84865831 | ID=Msa0895890-mRNA-1:three_prime_utr;Parent=Msa0895890-mRNA-1 |
Gene Sequence |
Protein sequence |