Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895920 | XP_024642081.1 | 92.369 | 249 | 19 | 0 | 3 | 251 | 15 | 263 | 3.29e-168 | 475 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895920 | sp|Q568K5|NAA40_DANRE | 34.434 | 212 | 113 | 4 | 24 | 233 | 29 | 216 | 8.46e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895920 | A0A396HG85 | 92.369 | 249 | 19 | 0 | 3 | 251 | 15 | 263 | 1.57e-168 | 475 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0895920 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895920 | MtrunA17_Chr6g0479551 | 92.369 | 249 | 19 | 0 | 3 | 251 | 15 | 263 | 3.03e-172 | 475 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895920 | AT1G18335.3 | 54.008 | 237 | 101 | 2 | 10 | 245 | 33 | 262 | 6.96e-78 | 236 |
| Msa0895920 | AT1G18335.2 | 54.008 | 237 | 101 | 2 | 10 | 245 | 33 | 262 | 6.96e-78 | 236 |
| Msa0895920 | AT1G18335.1 | 53.814 | 236 | 101 | 2 | 10 | 244 | 33 | 261 | 1.87e-77 | 235 |
Find 64 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTACTATCTTTCTTATAT+TGG | 0.149005 | 6_1:+84951318 | Msa0895920:three_prime_UTR |
| AATGGAGATTTAAAATTATC+TGG | 0.235296 | 6_1:-84951221 | None:intergenic |
| CTCTGTATGTATTGTTTAAC+AGG | 0.249538 | 6_1:-84948811 | None:intergenic |
| CTTCTCTCAGAGTTCATTGC+TGG | 0.279818 | 6_1:-84947504 | None:intergenic |
| ACCATTGGATAAACTTTAGA+AGG | 0.346375 | 6_1:-84950991 | None:intergenic |
| ACCCTTCTTATCAATACTTA+AGG | 0.354468 | 6_1:+84951279 | Msa0895920:three_prime_UTR |
| ATTTCGAAGCAGCGATAAAC+AGG | 0.379110 | 6_1:-84947688 | None:intergenic |
| TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_1:+84949805 | Msa0895920:CDS |
| CACAAATATATAGAGTGCTT+CGG | 0.393426 | 6_1:-84949681 | None:intergenic |
| TATCGCTGCTTCGAAATTAA+CGG | 0.393702 | 6_1:+84947694 | Msa0895920:CDS |
| CAAATCAGCTTATAGCATAA+AGG | 0.405600 | 6_1:+84947648 | Msa0895920:CDS |
| CTTAACATGGAAGGGCCATA+TGG | 0.413162 | 6_1:+84949608 | Msa0895920:CDS |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_1:+84949875 | Msa0895920:CDS |
| CATCTGTTGTTACAATCTAA+TGG | 0.430132 | 6_1:-84951167 | None:intergenic |
| ATCCTTAAGTATTGATAAGA+AGG | 0.433255 | 6_1:-84951281 | None:intergenic |
| ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_1:+84949862 | Msa0895920:CDS |
| TGTAACAACAGATGATATCT+TGG | 0.444908 | 6_1:+84951176 | Msa0895920:three_prime_UTR |
| TCTTGCCACTCAACCCCATA+TGG | 0.446874 | 6_1:-84949623 | None:intergenic |
| ACTCTATATATTTGTGAATG+AGG | 0.449192 | 6_1:+84949688 | Msa0895920:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_1:+84949652 | Msa0895920:CDS |
| TCTTCTTGAAGACTATTTGA+AGG | 0.460773 | 6_1:-84949761 | None:intergenic |
| CTCCATTCATCTATAACTGT+TGG | 0.462295 | 6_1:+84951237 | Msa0895920:three_prime_UTR |
| ATACATACAGAGACTTCTTA+AGG | 0.468464 | 6_1:+84948822 | Msa0895920:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_1:-84949880 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_1:+84949889 | Msa0895920:CDS |
| TGATTTGATGAGTTGTTCAT+TGG | 0.476653 | 6_1:-84947632 | None:intergenic |
| CTCTCAGTGTATTTAACGTC+AGG | 0.484898 | 6_1:+84948766 | Msa0895920:CDS |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.487794 | 6_1:+84949634 | Msa0895920:CDS |
| CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_1:+84949863 | Msa0895920:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_1:+84949779 | Msa0895920:CDS |
| ACAAATATATAGAGTGCTTC+GGG | 0.494543 | 6_1:-84949680 | None:intergenic |
| ATCCAACAGTTATAGATGAA+TGG | 0.495784 | 6_1:-84951239 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_1:+84949916 | Msa0895920:CDS |
| TTAACATGGAAGGGCCATAT+GGG | 0.503804 | 6_1:+84949609 | Msa0895920:CDS |
| CATTTCTTGTAGAACTGCAT+GGG | 0.509580 | 6_1:+84950171 | Msa0895920:intron |
| CAATGAACTCTGAGAGAAGA+AGG | 0.509758 | 6_1:+84947508 | Msa0895920:exon |
| TCAAGAAGATAGTGGTCCCT+TGG | 0.517972 | 6_1:+84949775 | Msa0895920:CDS |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_1:+84949874 | Msa0895920:CDS |
| ACATTTCTTGTAGAACTGCA+TGG | 0.529239 | 6_1:+84950170 | Msa0895920:intron |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_1:+84949600 | Msa0895920:intron |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_1:+84949869 | Msa0895920:CDS |
| CTTCTTGAAGACTATTTGAA+GGG | 0.543538 | 6_1:-84949760 | None:intergenic |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_1:+84949599 | Msa0895920:intron |
| ACCTTCTAAAGTTTATCCAA+TGG | 0.559757 | 6_1:+84950990 | Msa0895920:CDS |
| AATAGTCTTCAAGAAGATAG+TGG | 0.560281 | 6_1:+84949767 | Msa0895920:CDS |
| CAATCTAATGGTGCAGTGAG+TGG | 0.567174 | 6_1:-84951155 | None:intergenic |
| TATGTATTGTTTAACAGGAG+AGG | 0.567740 | 6_1:-84948806 | None:intergenic |
| AGAAGGGTCAACAAGAATGC+GGG | 0.588055 | 6_1:-84951264 | None:intergenic |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_1:-84949872 | None:intergenic |
| AAGGGCCATATGGGGTTGAG+TGG | 0.608626 | 6_1:+84949618 | Msa0895920:CDS |
| GTGTATTTAACGTCAGGACA+TGG | 0.610158 | 6_1:+84948772 | Msa0895920:CDS |
| AGTTCATACACATAAACTAC+CGG | 0.620623 | 6_1:-84949839 | None:intergenic |
| AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_1:+84949864 | Msa0895920:CDS |
| TCCTTAAGTATTGATAAGAA+GGG | 0.634915 | 6_1:-84951280 | None:intergenic |
| ATATGGGGTTGAGTGGCAAG+AGG | 0.653218 | 6_1:+84949625 | Msa0895920:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653227 | 6_1:+84949595 | Msa0895920:intron |
| AAGAAGGGTCAACAAGAATG+CGG | 0.661593 | 6_1:-84951265 | None:intergenic |
| ATAAACTTTAGAAGGTGATG+TGG | 0.664725 | 6_1:-84950983 | None:intergenic |
| TAACATGGAAGGGCCATATG+GGG | 0.667462 | 6_1:+84949610 | Msa0895920:CDS |
| TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_1:-84949791 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_1:-84949792 | None:intergenic |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_1:-84949814 | None:intergenic |
| GAAGACAACATTGTTCACTG+AGG | 0.772166 | 6_1:+84949733 | Msa0895920:CDS |
| GATAAACAGGAAAAGAAACG+AGG | 0.774734 | 6_1:-84947675 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATACAATTAATTAATA+AGG | - | chr6_1:84950384-84950403 | None:intergenic | 10.0% |
| !!! | ATTTTTCAATTAAGATAATG+AGG | + | chr6_1:84948257-84948276 | Msa0895920:intron | 15.0% |
| !!! | TTTTTCAATTAAGATAATGA+GGG | + | chr6_1:84948258-84948277 | Msa0895920:intron | 15.0% |
| !! | TTAATATTTCAACATGATTA+TGG | + | chr6_1:84948659-84948678 | Msa0895920:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | - | chr6_1:84949526-84949545 | None:intergenic | 15.0% |
| !! | ATAGAATATAGTTATATATG+TGG | - | chr6_1:84950513-84950532 | None:intergenic | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | + | chr6_1:84950733-84950752 | Msa0895920:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_1:84950818-84950837 | Msa0895920:intron | 15.0% |
| !! | ATTATAGTATTAGAAACTAC+AGG | - | chr6_1:84948634-84948653 | None:intergenic | 20.0% |
| !!! | TTACAATTAAGATGCATTTT+TGG | - | chr6_1:84949332-84949351 | None:intergenic | 20.0% |
| !!! | TTTTTCATTTGTTTATCATG+AGG | + | chr6_1:84949399-84949418 | Msa0895920:intron | 20.0% |
| !!! | TTTTCATTTGTTTATCATGA+GGG | + | chr6_1:84949400-84949419 | Msa0895920:intron | 20.0% |
| !! | TGATAGTATCAACAAAAATA+AGG | - | chr6_1:84949485-84949504 | None:intergenic | 20.0% |
| !! | TTGTTGATACTATCATAAAT+CGG | + | chr6_1:84949490-84949509 | Msa0895920:intron | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | - | chr6_1:84949527-84949546 | None:intergenic | 20.0% |
| !!! | CAATTTATTGACTTATTTAC+CGG | + | chr6_1:84950100-84950119 | Msa0895920:intron | 20.0% |
| !!! | ATTTTTACACAAGTAAACTA+AGG | + | chr6_1:84950238-84950257 | Msa0895920:CDS | 20.0% |
| !! | AGCGATAAAAAAATTAATGA+TGG | - | chr6_1:84950285-84950304 | None:intergenic | 20.0% |
| !!! | ATATTTTATGGAATGCATTA+AGG | - | chr6_1:84950408-84950427 | None:intergenic | 20.0% |
| !!! | AAGCAAACACAAATATTTTA+TGG | - | chr6_1:84950420-84950439 | None:intergenic | 20.0% |
| !! | TGTAATAGACTTATATACAA+GGG | + | chr6_1:84950534-84950553 | Msa0895920:intron | 20.0% |
| !! | GAATTATGAAAGAAGAAAAT+AGG | - | chr6_1:84950808-84950827 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_1:84950875-84950894 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | - | chr6_1:84951029-84951048 | None:intergenic | 20.0% |
| !!! | AATGGAGATTTAAAATTATC+TGG | - | chr6_1:84951224-84951243 | None:intergenic | 20.0% |
| !! | ATCTACTATCTTTCTTATAT+TGG | + | chr6_1:84951318-84951337 | Msa0895920:three_prime_UTR | 20.0% |
| ! | GCATTTAACAAAATCAAAAG+TGG | - | chr6_1:84947723-84947742 | None:intergenic | 25.0% |
| !! | GTTTTTCATAAGATATCATG+AGG | + | chr6_1:84947893-84947912 | Msa0895920:intron | 25.0% |
| !! | CTTATTGAATTTGAAGTGTT+TGG | + | chr6_1:84948126-84948145 | Msa0895920:intron | 25.0% |
| ! | CTAACTACATTACTAATTAC+AGG | + | chr6_1:84948590-84948609 | Msa0895920:intron | 25.0% |
| ! | ACAATTATACTTGTTCAGTA+TGG | + | chr6_1:84948936-84948955 | Msa0895920:intron | 25.0% |
| ! | TAGTATCAACAAAAATAAGG+CGG | - | chr6_1:84949482-84949501 | None:intergenic | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | + | chr6_1:84949550-84949569 | Msa0895920:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_1:84949551-84949570 | Msa0895920:intron | 25.0% |
| ! | ACTCTATATATTTGTGAATG+AGG | + | chr6_1:84949688-84949707 | Msa0895920:CDS | 25.0% |
| ! | TGTAAAAATTCATAGCTGAT+AGG | - | chr6_1:84950227-84950246 | None:intergenic | 25.0% |
| !! | TCTTTTTGTAGACATATATG+CGG | - | chr6_1:84950462-84950481 | None:intergenic | 25.0% |
| ! | GTGTAATAGACTTATATACA+AGG | + | chr6_1:84950533-84950552 | Msa0895920:intron | 25.0% |
| ! | TAATAATGATTGACATATCG+AGG | - | chr6_1:84950598-84950617 | None:intergenic | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | - | chr6_1:84950918-84950937 | None:intergenic | 25.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | - | chr6_1:84950919-84950938 | None:intergenic | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | - | chr6_1:84951025-84951044 | None:intergenic | 25.0% |
| !!! | TCCTTAAGTATTGATAAGAA+GGG | - | chr6_1:84951283-84951302 | None:intergenic | 25.0% |
| !!! | ATCCTTAAGTATTGATAAGA+AGG | - | chr6_1:84951284-84951303 | None:intergenic | 25.0% |
| TGATTTGATGAGTTGTTCAT+TGG | - | chr6_1:84947635-84947654 | None:intergenic | 30.0% | |
| CAAATCAGCTTATAGCATAA+AGG | + | chr6_1:84947648-84947667 | Msa0895920:CDS | 30.0% | |
| AGGAGCTTATGAAAATAAGT+TGG | + | chr6_1:84947913-84947932 | Msa0895920:intron | 30.0% | |
| GAACTTGTGAAAACAGTTTA+TGG | - | chr6_1:84947957-84947976 | None:intergenic | 30.0% | |
| CTATAAGCTCAAATACTACT+CGG | + | chr6_1:84948314-84948333 | Msa0895920:intron | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | - | chr6_1:84948744-84948763 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | + | chr6_1:84948742-84948761 | Msa0895920:intron | 30.0% |
| TATGTATTGTTTAACAGGAG+AGG | - | chr6_1:84948809-84948828 | None:intergenic | 30.0% | |
| CTCTGTATGTATTGTTTAAC+AGG | - | chr6_1:84948814-84948833 | None:intergenic | 30.0% | |
| ATACATACAGAGACTTCTTA+AGG | + | chr6_1:84948822-84948841 | Msa0895920:CDS | 30.0% | |
| TAAGTAACTCTGGTATTGTT+TGG | - | chr6_1:84948887-84948906 | None:intergenic | 30.0% | |
| ACATTTCAGTTAAGTAACTC+TGG | - | chr6_1:84948897-84948916 | None:intergenic | 30.0% | |
| TTGTGATAGACAATGGAATT+CGG | - | chr6_1:84949252-84949271 | None:intergenic | 30.0% | |
| ATATCTCTTGTGATAGACAA+TGG | - | chr6_1:84949259-84949278 | None:intergenic | 30.0% | |
| AATAGCAATCGTGAACAAAA+GGG | - | chr6_1:84949293-84949312 | None:intergenic | 30.0% | |
| AAATAGCAATCGTGAACAAA+AGG | - | chr6_1:84949294-84949313 | None:intergenic | 30.0% | |
| !! | TTTTGTTCACGATTGCTATT+TGG | + | chr6_1:84949293-84949312 | Msa0895920:intron | 30.0% |
| TTCAATGAATAAGCTAACAC+AGG | - | chr6_1:84949549-84949568 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6_1:84949595-84949614 | Msa0895920:intron | 30.0% | |
| ! | ACAAATATATAGAGTGCTTC+GGG | - | chr6_1:84949683-84949702 | None:intergenic | 30.0% |
| ! | CACAAATATATAGAGTGCTT+CGG | - | chr6_1:84949684-84949703 | None:intergenic | 30.0% |
| CTTCTTGAAGACTATTTGAA+GGG | - | chr6_1:84949763-84949782 | None:intergenic | 30.0% | |
| TCTTCTTGAAGACTATTTGA+AGG | - | chr6_1:84949764-84949783 | None:intergenic | 30.0% | |
| AATAGTCTTCAAGAAGATAG+TGG | + | chr6_1:84949767-84949786 | Msa0895920:CDS | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6_1:84949794-84949813 | None:intergenic | 30.0% | |
| AGTTCATACACATAAACTAC+CGG | - | chr6_1:84949842-84949861 | None:intergenic | 30.0% | |
| GAATTATTGCTATGTTGCAA+AGG | + | chr6_1:84949986-84950005 | Msa0895920:intron | 30.0% | |
| AGGAAAAGATGATGAATTGT+TGG | + | chr6_1:84950025-84950044 | Msa0895920:intron | 30.0% | |
| GTTTAATGACGCATCTAATA+TGG | + | chr6_1:84950130-84950149 | Msa0895920:intron | 30.0% | |
| ! | TGATAGGTTCATCTTTTGAA+CGG | - | chr6_1:84950211-84950230 | None:intergenic | 30.0% |
| TCAAGTTTGATATGAATGAG+AGG | + | chr6_1:84950320-84950339 | Msa0895920:intron | 30.0% | |
| CAAGTTTGATATGAATGAGA+GGG | + | chr6_1:84950321-84950340 | Msa0895920:intron | 30.0% | |
| CAAATAACTATGTGATGCTA+GGG | - | chr6_1:84950568-84950587 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTAGC+AGG | + | chr6_1:84950744-84950763 | Msa0895920:intron | 30.0% | |
| ATAATATTTGGATTTAGCCC+AGG | + | chr6_1:84950830-84950849 | Msa0895920:intron | 30.0% | |
| GATATCTTGATAGATAACCT+GGG | - | chr6_1:84950850-84950869 | None:intergenic | 30.0% | |
| TGATATCTTGATAGATAACC+TGG | - | chr6_1:84950851-84950870 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6_1:84950914-84950933 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6_1:84950915-84950934 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTCGTTTTGTTGA+CGG | + | chr6_1:84950926-84950945 | Msa0895920:intron | 30.0% |
| ! | ATAAACTTTAGAAGGTGATG+TGG | - | chr6_1:84950986-84951005 | None:intergenic | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | + | chr6_1:84950990-84951009 | Msa0895920:CDS | 30.0% |
| ACCATTGGATAAACTTTAGA+AGG | - | chr6_1:84950994-84951013 | None:intergenic | 30.0% | |
| !! | TAACACTTATGATTTTGGAG+GGG | - | chr6_1:84951024-84951043 | None:intergenic | 30.0% |
| ! | CATAACACTTATGATTTTGG+AGG | - | chr6_1:84951026-84951045 | None:intergenic | 30.0% |
| !!! | CGAAGCTAAAACTATTTTTG+AGG | + | chr6_1:84951128-84951147 | Msa0895920:CDS | 30.0% |
| CATCTGTTGTTACAATCTAA+TGG | - | chr6_1:84951170-84951189 | None:intergenic | 30.0% | |
| TGTAACAACAGATGATATCT+TGG | + | chr6_1:84951176-84951195 | Msa0895920:three_prime_UTR | 30.0% | |
| ATCCAACAGTTATAGATGAA+TGG | - | chr6_1:84951242-84951261 | None:intergenic | 30.0% | |
| ACCCTTCTTATCAATACTTA+AGG | + | chr6_1:84951279-84951298 | Msa0895920:three_prime_UTR | 30.0% | |
| ! | GAAAGATAGTAGATTTTGCA+AGG | - | chr6_1:84951312-84951331 | None:intergenic | 30.0% |
| TCAAAAACACTCTGTGAATG+AGG | - | chr6_1:84947565-84947584 | None:intergenic | 35.0% | |
| GATAAACAGGAAAAGAAACG+AGG | - | chr6_1:84947678-84947697 | None:intergenic | 35.0% | |
| TATCGCTGCTTCGAAATTAA+CGG | + | chr6_1:84947694-84947713 | Msa0895920:CDS | 35.0% | |
| TTACACATTAAGCCTCTGTT+TGG | + | chr6_1:84947783-84947802 | Msa0895920:intron | 35.0% | |
| TAAGCGATTTATCCAAACAG+AGG | - | chr6_1:84947798-84947817 | None:intergenic | 35.0% | |
| GATAAATCGCTTATTTCGCA+TGG | + | chr6_1:84947805-84947824 | Msa0895920:intron | 35.0% | |
| ACCAAGACTTTGTTACTGTT+TGG | + | chr6_1:84948041-84948060 | Msa0895920:intron | 35.0% | |
| ACCAAACAGTAACAAAGTCT+TGG | - | chr6_1:84948045-84948064 | None:intergenic | 35.0% | |
| TAACTGATAAGCTAACTGAC+AGG | + | chr6_1:84948074-84948093 | Msa0895920:intron | 35.0% | |
| AACTGATAAGCTAACTGACA+GGG | + | chr6_1:84948075-84948094 | Msa0895920:intron | 35.0% | |
| TGAGCTTGTATGTTTGGTAA+TGG | - | chr6_1:84948402-84948421 | None:intergenic | 35.0% | |
| AGCATATGAGCTTGTATGTT+TGG | - | chr6_1:84948408-84948427 | None:intergenic | 35.0% | |
| TTCAGTATGGCTCAAATTCA+TGG | + | chr6_1:84948949-84948968 | Msa0895920:intron | 35.0% | |
| ! | GTTTTCCAATAATGCAATGC+TGG | - | chr6_1:84949188-84949207 | None:intergenic | 35.0% |
| TTTCAAGACAAAAACCTTGC+CGG | - | chr6_1:84949440-84949459 | None:intergenic | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | + | chr6_1:84949554-84949573 | Msa0895920:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | + | chr6_1:84949555-84949574 | Msa0895920:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6_1:84949599-84949618 | Msa0895920:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | + | chr6_1:84949600-84949619 | Msa0895920:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | + | chr6_1:84949652-84949671 | Msa0895920:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6_1:84949795-84949814 | None:intergenic | 35.0% | |
| !!! | TGTACATTACCGCTTTGTTT+TGG | + | chr6_1:84949805-84949824 | Msa0895920:CDS | 35.0% |
| ! | AAAACACTTGAGCACCTTTT+GGG | - | chr6_1:84949933-84949952 | None:intergenic | 35.0% |
| ! | AAAAACACTTGAGCACCTTT+TGG | - | chr6_1:84949934-84949953 | None:intergenic | 35.0% |
| TGTTGGATTCGTTATCTTTG+AGG | + | chr6_1:84950042-84950061 | Msa0895920:intron | 35.0% | |
| ACATTTCTTGTAGAACTGCA+TGG | + | chr6_1:84950170-84950189 | Msa0895920:intron | 35.0% | |
| CATTTCTTGTAGAACTGCAT+GGG | + | chr6_1:84950171-84950190 | Msa0895920:intron | 35.0% | |
| AAGGTTTATACGAGCAGTTA+GGG | - | chr6_1:84950365-84950384 | None:intergenic | 35.0% | |
| TAAGGTTTATACGAGCAGTT+AGG | - | chr6_1:84950366-84950385 | None:intergenic | 35.0% | |
| !! | ATTTGTGTTTGCTTTTGAGC+AGG | + | chr6_1:84950426-84950445 | Msa0895920:intron | 35.0% |
| GCAAATAACTATGTGATGCT+AGG | - | chr6_1:84950569-84950588 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | - | chr6_1:84950913-84950932 | None:intergenic | 35.0% | |
| !! | AACACTTATGATTTTGGAGG+GGG | - | chr6_1:84951023-84951042 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | + | chr6_1:84951068-84951087 | Msa0895920:intron | 35.0% | |
| CTCCATTCATCTATAACTGT+TGG | + | chr6_1:84951237-84951256 | Msa0895920:three_prime_UTR | 35.0% | |
| ! | CAATGAACTCTGAGAGAAGA+AGG | + | chr6_1:84947508-84947527 | Msa0895920:exon | 40.0% |
| ! | ACAAAACTGTTCCGTTTTGC+AGG | + | chr6_1:84947591-84947610 | Msa0895920:intron | 40.0% |
| ATTTCGAAGCAGCGATAAAC+AGG | - | chr6_1:84947691-84947710 | None:intergenic | 40.0% | |
| ACAAAGTCTTGGTACGTGTT+TGG | - | chr6_1:84948034-84948053 | None:intergenic | 40.0% | |
| AGGGATAAACTAGCTGATAG+TGG | + | chr6_1:84948094-84948113 | Msa0895920:intron | 40.0% | |
| !! | CTAGCTGATAGTGGATAAAC+TGG | + | chr6_1:84948103-84948122 | Msa0895920:intron | 40.0% |
| TCCGCTATAAGTTAGCAGTT+TGG | + | chr6_1:84948436-84948455 | Msa0895920:intron | 40.0% | |
| GCCAAACTGCTAACTTATAG+CGG | - | chr6_1:84948440-84948459 | None:intergenic | 40.0% | |
| !! | AGTCAGACACTCGTCATTTT+AGG | - | chr6_1:84948477-84948496 | None:intergenic | 40.0% |
| GTTAAATACACTGAGAGACC+TGG | - | chr6_1:84948763-84948782 | None:intergenic | 40.0% | |
| CTCTCAGTGTATTTAACGTC+AGG | + | chr6_1:84948766-84948785 | Msa0895920:CDS | 40.0% | |
| GTGTATTTAACGTCAGGACA+TGG | + | chr6_1:84948772-84948791 | Msa0895920:CDS | 40.0% | |
| GGCTCAAATTCATGGATAAG+TGG | + | chr6_1:84948957-84948976 | Msa0895920:intron | 40.0% | |
| GATCTATAAGTGCAACGTAG+TGG | + | chr6_1:84949004-84949023 | Msa0895920:intron | 40.0% | |
| TAGGAATGATCCAAGCTCAA+AGG | - | chr6_1:84949044-84949063 | None:intergenic | 40.0% | |
| TTTGAGCTTGGATCATTCCT+AGG | + | chr6_1:84949043-84949062 | Msa0895920:intron | 40.0% | |
| TTGAGCTTGGATCATTCCTA+GGG | + | chr6_1:84949044-84949063 | Msa0895920:intron | 40.0% | |
| CATTCCTAGGGTTATGACTA+TGG | + | chr6_1:84949056-84949075 | Msa0895920:intron | 40.0% | |
| TAGACCATAGTCATAACCCT+AGG | - | chr6_1:84949063-84949082 | None:intergenic | 40.0% | |
| GTTATGACTATGGTCTACGA+GGG | + | chr6_1:84949066-84949085 | Msa0895920:intron | 40.0% | |
| TAACCCCTAAACTGTACCAT+GGG | - | chr6_1:84949114-84949133 | None:intergenic | 40.0% | |
| TTAACCCCTAAACTGTACCA+TGG | - | chr6_1:84949115-84949134 | None:intergenic | 40.0% | |
| TAATGCAATGCTGGAAGCTA+CGG | - | chr6_1:84949179-84949198 | None:intergenic | 40.0% | |
| AGCTTCCAGCATTGCATTAT+TGG | + | chr6_1:84949180-84949199 | Msa0895920:intron | 40.0% | |
| ! | CGTTCTGTTGTTTGAGATGT+AGG | + | chr6_1:84949217-84949236 | Msa0895920:intron | 40.0% |
| ! | GTTTGAGATGTAGGCACAAT+TGG | + | chr6_1:84949226-84949245 | Msa0895920:intron | 40.0% |
| ! | GTTTTTGTCTTGAAACCTCG+TGG | + | chr6_1:84949445-84949464 | Msa0895920:intron | 40.0% |
| TTAACATGGAAGGGCCATAT+GGG | + | chr6_1:84949609-84949628 | Msa0895920:CDS | 40.0% | |
| GAAGACAACATTGTTCACTG+AGG | + | chr6_1:84949733-84949752 | Msa0895920:CDS | 40.0% | |
| CCTCTTCTTCCAAAACAAAG+CGG | - | chr6_1:84949817-84949836 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_1:84949820-84949839 | Msa0895920:CDS | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_1:84949889-84949908 | Msa0895920:CDS | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | + | chr6_1:84949916-84949935 | Msa0895920:CDS | 40.0% | |
| GCGTCATTAAACTCAAAAGC+CGG | - | chr6_1:84950122-84950141 | None:intergenic | 40.0% | |
| TGTAGACATATATGCGGTTC+AGG | - | chr6_1:84950456-84950475 | None:intergenic | 40.0% | |
| !! | ACACTTATGATTTTGGAGGG+GGG | - | chr6_1:84951022-84951041 | None:intergenic | 40.0% |
| AAGAAGGGTCAACAAGAATG+CGG | - | chr6_1:84951268-84951287 | None:intergenic | 40.0% | |
| CTTTGCGAGTACCTGCAAAA+CGG | - | chr6_1:84947605-84947624 | None:intergenic | 45.0% | |
| !! | TCGTCATTTTAGGCTCTGGT+TGG | - | chr6_1:84948467-84948486 | None:intergenic | 45.0% |
| !! | ACACTCGTCATTTTAGGCTC+TGG | - | chr6_1:84948471-84948490 | None:intergenic | 45.0% |
| CACTGAGAGACCTGGAAATA+AGG | - | chr6_1:84948755-84948774 | None:intergenic | 45.0% | |
| GGTTATGACTATGGTCTACG+AGG | + | chr6_1:84949065-84949084 | Msa0895920:intron | 45.0% | |
| AACCCCTAAACTGTACCATG+GGG | - | chr6_1:84949113-84949132 | None:intergenic | 45.0% | |
| TTTATCATGAGGGCAAGCCT+TGG | + | chr6_1:84949410-84949429 | Msa0895920:intron | 45.0% | |
| CTTAACATGGAAGGGCCATA+TGG | + | chr6_1:84949608-84949627 | Msa0895920:CDS | 45.0% | |
| TAACATGGAAGGGCCATATG+GGG | + | chr6_1:84949610-84949629 | Msa0895920:CDS | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_1:84949634-84949653 | Msa0895920:CDS | 45.0% | |
| ! | TCAAGAAGATAGTGGTCCCT+TGG | + | chr6_1:84949775-84949794 | Msa0895920:CDS | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | + | chr6_1:84949814-84949833 | Msa0895920:CDS | 45.0% |
| AAGGACACAGCTTGTAGTCT+AGG | + | chr6_1:84950005-84950024 | Msa0895920:intron | 45.0% | |
| CAATCTAATGGTGCAGTGAG+TGG | - | chr6_1:84951158-84951177 | None:intergenic | 45.0% | |
| AGAAGGGTCAACAAGAATGC+GGG | - | chr6_1:84951267-84951286 | None:intergenic | 45.0% | |
| ACTCACTATGCTCGAGTGTC+TGG | - | chr6_1:84948983-84949002 | None:intergenic | 50.0% | |
| !! | GTGCAACGTAGTGGATTGAG+AGG | + | chr6_1:84949013-84949032 | Msa0895920:intron | 50.0% |
| AGAGGTCATGCCTTTGAGCT+TGG | + | chr6_1:84949031-84949050 | Msa0895920:intron | 50.0% | |
| ATGCCCCCATGGTACAGTTT+AGG | + | chr6_1:84949106-84949125 | Msa0895920:intron | 50.0% | |
| TGCCCCCATGGTACAGTTTA+GGG | + | chr6_1:84949107-84949126 | Msa0895920:intron | 50.0% | |
| ACCCCTAAACTGTACCATGG+GGG | - | chr6_1:84949112-84949131 | None:intergenic | 50.0% | |
| TCTTGCCACTCAACCCCATA+TGG | - | chr6_1:84949626-84949645 | None:intergenic | 50.0% | |
| ATATGGGGTTGAGTGGCAAG+AGG | + | chr6_1:84949625-84949644 | Msa0895920:CDS | 50.0% | |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_1:84949779-84949798 | Msa0895920:CDS | 50.0% |
| GCCCCCATGGTACAGTTTAG+GGG | + | chr6_1:84949108-84949127 | Msa0895920:intron | 55.0% | |
| AAAACCTTGCCGGTGTGCCA+AGG | - | chr6_1:84949430-84949449 | None:intergenic | 55.0% | |
| AAGGGCCATATGGGGTTGAG+TGG | + | chr6_1:84949618-84949637 | Msa0895920:CDS | 55.0% | |
| AATCCTTTCCCCTGGACACG+AGG | - | chr6_1:84949875-84949894 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_1:84949874-84949893 | Msa0895920:CDS | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_1:84949875-84949894 | Msa0895920:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_1:84949883-84949902 | None:intergenic | 55.0% | |
| ! | TGGAGGGGGGTACATACCAT+TGG | - | chr6_1:84951009-84951028 | None:intergenic | 55.0% |
| GTCTACGAGGGTTGAGCGTG+CGG | + | chr6_1:84949078-84949097 | Msa0895920:intron | 60.0% | |
| TCTACGAGGGTTGAGCGTGC+GGG | + | chr6_1:84949079-84949098 | Msa0895920:intron | 60.0% | |
| GCGGCAAAGTGTGATCCACG+AGG | - | chr6_1:84949463-84949482 | None:intergenic | 60.0% | |
| CTACGAGGGTTGAGCGTGCG+GGG | + | chr6_1:84949080-84949099 | Msa0895920:intron | 65.0% | |
| TACGAGGGTTGAGCGTGCGG+GGG | + | chr6_1:84949081-84949100 | Msa0895920:intron | 65.0% | |
| GAGGGCAAGCCTTGGCACAC+CGG | + | chr6_1:84949418-84949437 | Msa0895920:intron | 65.0% | |
| CAAGCCTTGGCACACCGGCA+AGG | + | chr6_1:84949423-84949442 | Msa0895920:intron | 65.0% | |
| ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6_1:84949862-84949881 | Msa0895920:CDS | 65.0% | |
| CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6_1:84949863-84949882 | Msa0895920:CDS | 65.0% | |
| AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6_1:84949864-84949883 | Msa0895920:CDS | 65.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_1:84949869-84949888 | Msa0895920:CDS | 65.0% | |
| GTGCGGGGGCAATGCCCCCA+TGG | + | chr6_1:84949095-84949114 | Msa0895920:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 84947505 | 84951350 | 84947505 | ID=Msa0895920;Name=Msa0895920 |
| chr6_1 | mRNA | 84947505 | 84951350 | 84947505 | ID=Msa0895920-mRNA-1;Parent=Msa0895920;Name=Msa0895920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=5|1|1|1|1|1|7|177|251 |
| chr6_1 | exon | 84947505 | 84947545 | 84947505 | ID=Msa0895920-mRNA-1:exon:14319;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84947613 | 84947715 | 84947613 | ID=Msa0895920-mRNA-1:exon:14320;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84948764 | 84948843 | 84948764 | ID=Msa0895920-mRNA-1:exon:14321;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84949608 | 84949937 | 84949608 | ID=Msa0895920-mRNA-1:exon:14322;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84950183 | 84950259 | 84950183 | ID=Msa0895920-mRNA-1:exon:14323;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84950969 | 84951011 | 84950969 | ID=Msa0895920-mRNA-1:exon:14324;Parent=Msa0895920-mRNA-1 |
| chr6_1 | exon | 84951087 | 84951350 | 84951087 | ID=Msa0895920-mRNA-1:exon:14325;Parent=Msa0895920-mRNA-1 |
| chr6_1 | five_prime_UTR | 84947505 | 84947509 | 84947505 | ID=Msa0895920-mRNA-1:five_prime_utr;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84947510 | 84947545 | 84947510 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84947613 | 84947715 | 84947613 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84948764 | 84948843 | 84948764 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84949608 | 84949937 | 84949608 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84950183 | 84950259 | 84950183 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84950969 | 84951011 | 84950969 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | CDS | 84951087 | 84951173 | 84951087 | ID=Msa0895920-mRNA-1:cds;Parent=Msa0895920-mRNA-1 |
| chr6_1 | three_prime_UTR | 84951174 | 84951350 | 84951174 | ID=Msa0895920-mRNA-1:three_prime_utr;Parent=Msa0895920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
