Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895930 | KAF7813480.1 | 56.118 | 237 | 38 | 5 | 108 | 280 | 2 | 236 | 7.69e-71 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895930 | sp|Q922Y0|DYRK3_MOUSE | 57.895 | 57 | 24 | 0 | 151 | 207 | 325 | 381 | 6.38e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895930 | A0A834T2M5 | 56.118 | 237 | 38 | 5 | 108 | 280 | 2 | 236 | 3.68e-71 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895930 | MtrunA17_Chr6g0480541 | 64.433 | 194 | 8 | 2 | 148 | 280 | 1016 | 1209 | 2.95e-70 | 235 |
| Msa0895930 | MtrunA17_Chr5g0437131 | 44.792 | 192 | 45 | 2 | 148 | 278 | 521 | 712 | 3.00e-46 | 165 |
| Msa0895930 | MtrunA17_Chr6g0480291 | 87.302 | 63 | 8 | 0 | 218 | 280 | 22 | 84 | 1.49e-32 | 115 |
| Msa0895930 | MtrunA17_Chr6g0480481 | 74.026 | 77 | 20 | 0 | 131 | 207 | 99 | 175 | 3.59e-31 | 115 |
| Msa0895930 | MtrunA17_Chr4g0006741 | 58.491 | 106 | 34 | 3 | 5 | 100 | 1033 | 1138 | 2.75e-28 | 114 |
| Msa0895930 | MtrunA17_Chr6g0480191 | 90.476 | 42 | 4 | 0 | 239 | 280 | 1 | 42 | 1.55e-20 | 82.8 |
| Msa0895930 | MtrunA17_Chr6g0480331 | 87.805 | 41 | 5 | 0 | 218 | 258 | 2 | 42 | 2.85e-19 | 79.3 |
| Msa0895930 | MtrunA17_Chr8g0369241 | 52.542 | 59 | 26 | 1 | 151 | 207 | 257 | 315 | 1.45e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895930 | AT1G73450.1 | 60.309 | 194 | 16 | 2 | 148 | 280 | 959 | 1152 | 3.45e-67 | 226 |
| Msa0895930 | AT1G73460.2 | 59.000 | 200 | 21 | 2 | 142 | 280 | 970 | 1169 | 6.31e-67 | 226 |
| Msa0895930 | AT1G73460.1 | 59.000 | 200 | 21 | 2 | 142 | 280 | 970 | 1169 | 6.31e-67 | 226 |
| Msa0895930 | AT3G17750.1 | 58.247 | 194 | 20 | 2 | 148 | 280 | 945 | 1138 | 1.33e-62 | 214 |
| Msa0895930 | AT2G40120.1 | 42.391 | 184 | 45 | 2 | 150 | 272 | 381 | 564 | 1.26e-37 | 140 |
| Msa0895930 | AT3G17740.1 | 42.727 | 110 | 53 | 2 | 1 | 100 | 1020 | 1129 | 2.98e-17 | 82.4 |
| Msa0895930 | AT4G03175.1 | 52.632 | 57 | 27 | 0 | 216 | 272 | 37 | 93 | 3.89e-14 | 67.4 |
| Msa0895930 | AT5G35980.1 | 53.448 | 58 | 26 | 1 | 151 | 207 | 240 | 297 | 2.69e-12 | 67.4 |
| Msa0895930 | AT5G35980.2 | 53.448 | 58 | 26 | 1 | 151 | 207 | 240 | 297 | 2.89e-12 | 67.4 |
| Msa0895930 | AT5G35980.3 | 53.448 | 58 | 26 | 1 | 151 | 207 | 205 | 262 | 3.38e-12 | 67.4 |
Find 70 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGTAACAACATTCTTTC+TGG | 0.134761 | 6_1:+84957636 | None:intergenic |
| CTTGAAGCCGGAGAATATTT+TGG | 0.238296 | 6_1:-84954728 | Msa0895930:CDS |
| ATGCAGAAGGTCGCTTCTTC+TGG | 0.292063 | 6_1:+84952957 | None:intergenic |
| TCAAACCATATTGTCCTTAC+TGG | 0.343957 | 6_1:-84956010 | Msa0895930:CDS |
| CATTTCCAGTAAGGACAATA+TGG | 0.353428 | 6_1:+84956005 | None:intergenic |
| AGAATATTTCGAGATGATAT+CGG | 0.412358 | 6_1:+84952893 | None:intergenic |
| TTACAGCTCAGTTGTACATT+GGG | 0.413080 | 6_1:-84956404 | Msa0895930:CDS |
| ACCACTGTTCGAAAGGGTAT+TGG | 0.415465 | 6_1:-84956440 | Msa0895930:CDS |
| CCACTGTTCGAAAGGGTATT+GGG | 0.416890 | 6_1:-84956439 | Msa0895930:CDS |
| ACCCTAGCAAGTAATGTTGC+CGG | 0.425646 | 6_1:+84953609 | None:intergenic |
| TATCATCTCGAAATATTCTT+CGG | 0.435092 | 6_1:-84952889 | Msa0895930:CDS |
| AACATTCTTTCTGGACCATA+GGG | 0.442856 | 6_1:+84957645 | None:intergenic |
| CTTCAGTATTTACATAACCT+TGG | 0.444556 | 6_1:-84954766 | Msa0895930:intron |
| GCAGTGCTCTGGTATTGATA+TGG | 0.450815 | 6_1:-84955870 | Msa0895930:intron |
| CAACATTCTTTCTGGACCAT+AGG | 0.451470 | 6_1:+84957644 | None:intergenic |
| TTTGCTCATTTGTTCAGTCC+AGG | 0.457959 | 6_1:-84954636 | Msa0895930:CDS |
| TTGATATGCAGGAAAGCAAC+AGG | 0.462723 | 6_1:-84953078 | Msa0895930:intron |
| GGAAACCATCTGTAGTTGTC+TGG | 0.474606 | 6_1:-84956503 | Msa0895930:CDS |
| CCCTAGCAAGTAATGTTGCC+GGG | 0.476537 | 6_1:+84953610 | None:intergenic |
| AGTTGTACATTGGGTATGAA+TGG | 0.479415 | 6_1:-84956395 | Msa0895930:CDS |
| TTACTATACGTTTACAAGCA+TGG | 0.484267 | 6_1:-84955776 | Msa0895930:CDS |
| CTACGGATTCTCCTTTCTGC+AGG | 0.489863 | 6_1:+84957690 | None:intergenic |
| CCCGGCAACATTACTTGCTA+GGG | 0.494802 | 6_1:-84953610 | Msa0895930:intron |
| CCCCGGCAACATTACTTGCT+AGG | 0.495623 | 6_1:-84953611 | Msa0895930:CDS |
| GTCTCACACCACTGTTCGAA+AGG | 0.503447 | 6_1:-84956447 | Msa0895930:CDS |
| AGAATCCAACTGCAGTGCTC+TGG | 0.503918 | 6_1:-84955881 | Msa0895930:intron |
| GAATCCGTAGCTATCACATA+AGG | 0.505251 | 6_1:-84957677 | Msa0895930:five_prime_UTR |
| CTGAAGCTCTAAAGCACCCC+TGG | 0.505898 | 6_1:-84952934 | Msa0895930:CDS |
| CCTCCACAAAACCTTGCATC+AGG | 0.506986 | 6_1:+84955842 | None:intergenic |
| CAAAAGTCTCATTTCCAGTA+AGG | 0.509901 | 6_1:+84955996 | None:intergenic |
| TTTACAGCTCAGTTGTACAT+TGG | 0.515781 | 6_1:-84956405 | Msa0895930:CDS |
| CTTATTTCAAAATGATTCCC+CGG | 0.520946 | 6_1:-84953628 | Msa0895930:CDS |
| GAGGTGAAGGTCATTGATCT+TGG | 0.522315 | 6_1:-84954685 | Msa0895930:CDS |
| ATGCAATCCATGCCTGCCCC+TGG | 0.523639 | 6_1:-84956329 | Msa0895930:intron |
| ATTTACATGTACTTCTACAA+TGG | 0.524809 | 6_1:+84955733 | None:intergenic |
| ATAAGGATGCTGAATCCCTA+TGG | 0.527820 | 6_1:-84957660 | Msa0895930:exon |
| CTCAGGAGCACGATAGGACC+TGG | 0.537644 | 6_1:+84954618 | None:intergenic |
| AGTTGCAATGTATTAGTCCA+AGG | 0.538351 | 6_1:+84954749 | None:intergenic |
| CACAAATACGCACCAGGGGC+AGG | 0.538467 | 6_1:+84956317 | None:intergenic |
| CAGGTTAAAACCACTATGGT+TGG | 0.540954 | 6_1:-84956041 | Msa0895930:CDS |
| TTTGTAAGTGTATGACAACC+AGG | 0.555185 | 6_1:+84952916 | None:intergenic |
| ATACGCACCAGGGGCAGGCA+TGG | 0.556516 | 6_1:+84956322 | None:intergenic |
| TTTGAGGCATAGATTACCGA+TGG | 0.557764 | 6_1:-84953026 | Msa0895930:CDS |
| GAGACTCCGTCCAACCATAG+TGG | 0.564034 | 6_1:+84956031 | None:intergenic |
| CCCAATACCCTTTCGAACAG+TGG | 0.564120 | 6_1:+84956439 | None:intergenic |
| AATAACCTCAGGAGCACGAT+AGG | 0.565802 | 6_1:+84954612 | None:intergenic |
| ATACCAGGTTAAAACCACTA+TGG | 0.565859 | 6_1:-84956045 | Msa0895930:intron |
| GCATCCTTATGTGATAGCTA+CGG | 0.573229 | 6_1:+84957673 | None:intergenic |
| CTTTGTTGCTCATTTGCTCG+AGG | 0.575791 | 6_1:-84952984 | Msa0895930:CDS |
| AATACATTGCAACTTGAAGC+CGG | 0.581247 | 6_1:-84954740 | Msa0895930:CDS |
| TCTCACACCACTGTTCGAAA+GGG | 0.589330 | 6_1:-84956446 | Msa0895930:CDS |
| TATCCCACATTACTTGCTGT+AGG | 0.589958 | 6_1:+84955972 | None:intergenic |
| TGGAGGATGTTCTGAATGCA+TGG | 0.597504 | 6_1:-84955825 | Msa0895930:CDS |
| AATGCTTGTGACCTGCAGAA+AGG | 0.599287 | 6_1:-84957701 | Msa0895930:five_prime_UTR |
| TTGAGGCATAGATTACCGAT+GGG | 0.601000 | 6_1:-84953025 | Msa0895930:CDS |
| CTACAGCCGATGTGAGGTGA+AGG | 0.619012 | 6_1:-84954698 | Msa0895930:CDS |
| CAGGTCCTATCGTGCTCCTG+AGG | 0.625226 | 6_1:-84954617 | Msa0895930:intron |
| ATATGGTAAGACCTGATGCA+AGG | 0.625239 | 6_1:-84955853 | Msa0895930:CDS |
| AAAAGCCAGACAACTACAGA+TGG | 0.630771 | 6_1:+84956498 | None:intergenic |
| TTAAAACCACTATGGTTGGA+CGG | 0.633137 | 6_1:-84956037 | Msa0895930:CDS |
| AAGATACGTCGAGATGCAGA+AGG | 0.636029 | 6_1:+84956357 | None:intergenic |
| TTTAGAGCTTCAGATGCAGA+AGG | 0.638379 | 6_1:+84952944 | None:intergenic |
| TAAAAGCTACAGCCGATGTG+AGG | 0.648020 | 6_1:-84954704 | Msa0895930:CDS |
| TGGACTGAACAAATGAGCAA+AGG | 0.656403 | 6_1:+84954638 | None:intergenic |
| CCTAGCAAGTAATGTTGCCG+GGG | 0.658672 | 6_1:+84953611 | None:intergenic |
| TTGTAAGTGTATGACAACCA+GGG | 0.667063 | 6_1:+84952917 | None:intergenic |
| TGTAAGTGTATGACAACCAG+GGG | 0.673613 | 6_1:+84952918 | None:intergenic |
| CAATGACCTTCACCTCACAT+CGG | 0.686191 | 6_1:+84954692 | None:intergenic |
| TGAGGCATAGATTACCGATG+GGG | 0.704333 | 6_1:-84953024 | Msa0895930:CDS |
| GAGGCATAGATTACCGATGG+GGG | 0.709051 | 6_1:-84953023 | Msa0895930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTTGAAAATATTTA+TGG | + | chr6_1:84956166-84956185 | None:intergenic | 10.0% |
| !!! | ATTTATGCTTTTAAAGTATA+AGG | + | chr6_1:84953037-84953056 | None:intergenic | 15.0% |
| !! | ATTCAGAAATATATTACTTT+GGG | + | chr6_1:84953114-84953133 | None:intergenic | 15.0% |
| !! | TATTCAGAAATATATTACTT+TGG | + | chr6_1:84953115-84953134 | None:intergenic | 15.0% |
| !! | ATCAAAAACAAAATTTAATG+TGG | + | chr6_1:84953682-84953701 | None:intergenic | 15.0% |
| !! | GTAAGATAATAAGATAATAA+GGG | + | chr6_1:84954004-84954023 | None:intergenic | 15.0% |
| !! | TGTAAGATAATAAGATAATA+AGG | + | chr6_1:84954005-84954024 | None:intergenic | 15.0% |
| !! | CTCTATTTATATATAAACTA+AGG | - | chr6_1:84954087-84954106 | Msa0895930:intron | 15.0% |
| !! | TATTACACAATGAATTAATT+AGG | + | chr6_1:84955245-84955264 | None:intergenic | 15.0% |
| !!! | TTTAAACTCTTTTATTATAG+CGG | + | chr6_1:84955763-84955782 | None:intergenic | 15.0% |
| !! | TAATAAAAGAGTTTAAATGA+AGG | - | chr6_1:84955766-84955785 | Msa0895930:CDS | 15.0% |
| !! | AATAAAAGAGTTTAAATGAA+GGG | - | chr6_1:84955767-84955786 | Msa0895930:CDS | 15.0% |
| !! | AATAAGGAAAGAAAATAAAT+GGG | + | chr6_1:84956963-84956982 | None:intergenic | 15.0% |
| !!! | AGTCAATTTCATAAATTTTA+GGG | + | chr6_1:84957266-84957285 | None:intergenic | 15.0% |
| !!! | TAGTCAATTTCATAAATTTT+AGG | + | chr6_1:84957267-84957286 | None:intergenic | 15.0% |
| !!! | TTTTAAGGATAAATAAGAGA+AGG | - | chr6_1:84953266-84953285 | Msa0895930:intron | 20.0% |
| !! | TTTAAGGATAAATAAGAGAA+GGG | - | chr6_1:84953267-84953286 | Msa0895930:intron | 20.0% |
| !! | ACTTAAAAATTGCAAAAACA+TGG | - | chr6_1:84953607-84953626 | Msa0895930:intron | 20.0% |
| !! | ATTTATGTCTATGAACTTTA+CGG | - | chr6_1:84953646-84953665 | Msa0895930:intron | 20.0% |
| !! | TCAAAAGAAATGTAAGAAAA+AGG | + | chr6_1:84953924-84953943 | None:intergenic | 20.0% |
| !! | TAAAACAATCATCGTTTATT+AGG | - | chr6_1:84954372-84954391 | Msa0895930:intron | 20.0% |
| !! | GAAATCAATACAAGATTTAT+TGG | - | chr6_1:84955110-84955129 | Msa0895930:intron | 20.0% |
| !! | GTAAACTGTAAATTAAGATT+TGG | - | chr6_1:84955149-84955168 | Msa0895930:intron | 20.0% |
| !!! | AAGAACTTTTAAAAATCGAA+TGG | - | chr6_1:84955557-84955576 | Msa0895930:intron | 20.0% |
| !! | TTATTTAAGTGGAACAAAAA+TGG | + | chr6_1:84956472-84956491 | None:intergenic | 20.0% |
| !!! | TTTTACATGTGAAAATGATT+TGG | - | chr6_1:84956506-84956525 | Msa0895930:intron | 20.0% |
| !! | ATACTTTGTCAAGTTATTTA+AGG | + | chr6_1:84956764-84956783 | None:intergenic | 20.0% |
| !! | CAATAAGGAAAGAAAATAAA+TGG | + | chr6_1:84956964-84956983 | None:intergenic | 20.0% |
| !! | AACATAGTTGAATATCAATA+AGG | + | chr6_1:84956979-84956998 | None:intergenic | 20.0% |
| !! | TATTAACGTCCAAATAATAT+GGG | + | chr6_1:84957450-84957469 | None:intergenic | 20.0% |
| !! | ATACAATCGTATGATAATAT+GGG | + | chr6_1:84957503-84957522 | None:intergenic | 20.0% |
| !! | TGCATAACTTTTCATTTCTT+AGG | - | chr6_1:84953135-84953154 | Msa0895930:intron | 25.0% |
| !! | ATTGAGTCAGTTATGTTTTA+AGG | - | chr6_1:84953251-84953270 | Msa0895930:intron | 25.0% |
| ! | CAATTTATTGATAGAAACTC+TGG | + | chr6_1:84953465-84953484 | None:intergenic | 25.0% |
| ! | AACAGTATTCTGATAGATAT+CGG | + | chr6_1:84953520-84953539 | None:intergenic | 25.0% |
| ! | CATAGACATAAATGTTTACA+CGG | + | chr6_1:84953639-84953658 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGATCTAGCAAA+TGG | - | chr6_1:84953690-84953709 | Msa0895930:intron | 25.0% |
| ! | GAAATGTAAGAAAAAGGTTA+AGG | + | chr6_1:84953918-84953937 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTCAGACAAAAT+TGG | - | chr6_1:84953938-84953957 | Msa0895930:intron | 25.0% |
| ! | GAAAATATGTCATAGAAACA+GGG | + | chr6_1:84954030-84954049 | None:intergenic | 25.0% |
| ! | AGAAAATATGTCATAGAAAC+AGG | + | chr6_1:84954031-84954050 | None:intergenic | 25.0% |
| ! | AATATTTGGTAGAACTAGAA+AGG | - | chr6_1:84954414-84954433 | Msa0895930:intron | 25.0% |
| ! | GGATAAAGAATTGAATTTCA+TGG | - | chr6_1:84954688-84954707 | Msa0895930:CDS | 25.0% |
| ! | AATTGAATTTCATGGTGATA+TGG | - | chr6_1:84954696-84954715 | Msa0895930:CDS | 25.0% |
| ! | ATTTACATGTACTTCTACAA+TGG | + | chr6_1:84954912-84954931 | None:intergenic | 25.0% |
| ! | AAGTTCAAATACATTATCCA+AGG | + | chr6_1:84954947-84954966 | None:intergenic | 25.0% |
| ! | TACTGAAAAAAGCAAATATC+AGG | - | chr6_1:84954993-84955012 | Msa0895930:intron | 25.0% |
| !! | AAAAGCTTGAATTTCAAGTA+TGG | - | chr6_1:84955607-84955626 | Msa0895930:intron | 25.0% |
| !! | AAAGCTTGAATTTCAAGTAT+GGG | - | chr6_1:84955608-84955627 | Msa0895930:intron | 25.0% |
| ! | AGTTTAAATGAAGGGTAAAT+TGG | - | chr6_1:84955775-84955794 | Msa0895930:CDS | 25.0% |
| !! | CTTTTAACCAAAATATTCTC+CGG | + | chr6_1:84955924-84955943 | None:intergenic | 25.0% |
| ! | CTAATATATCAGGTCTAATT+AGG | - | chr6_1:84956259-84956278 | Msa0895930:intron | 25.0% |
| ! | GAACAAAAATGGAATGAAAT+GGG | + | chr6_1:84956461-84956480 | None:intergenic | 25.0% |
| ! | ACTTCATCAGTTTATTTAAG+TGG | + | chr6_1:84956483-84956502 | None:intergenic | 25.0% |
| !! | AAAATGATTTGTGACATATC+AGG | - | chr6_1:84956797-84956816 | Msa0895930:intron | 25.0% |
| ! | TAGGGTTATTATTCTTCTTT+GGG | - | chr6_1:84956860-84956879 | Msa0895930:intron | 25.0% |
| !!! | AACTATGTTTGTTGTATTGT+AGG | - | chr6_1:84956990-84957009 | Msa0895930:intron | 25.0% |
| ! | AAAATCATATGCTTAATGAG+AGG | - | chr6_1:84957119-84957138 | Msa0895930:intron | 25.0% |
| !! | TATTTTTCGTTCGTGTATAT+TGG | - | chr6_1:84957285-84957304 | Msa0895930:intron | 25.0% |
| ! | TCATAATTGCCCATATTATT+TGG | - | chr6_1:84957438-84957457 | Msa0895930:intron | 25.0% |
| ! | CTATTAACGTCCAAATAATA+TGG | + | chr6_1:84957451-84957470 | None:intergenic | 25.0% |
| ! | TATGATAATATGGGCATATT+TGG | + | chr6_1:84957494-84957513 | None:intergenic | 25.0% |
| ! | CATACAATCGTATGATAATA+TGG | + | chr6_1:84957504-84957523 | None:intergenic | 25.0% |
| !!! | ACTGAATAATTTTTGGAATC+AGG | + | chr6_1:84957531-84957550 | None:intergenic | 25.0% |
| ! | ATTCCAAAAATTATTCAGTG+AGG | - | chr6_1:84957532-84957551 | Msa0895930:intron | 25.0% |
| ! | AGAATATTTCGAGATGATAT+CGG | + | chr6_1:84957752-84957771 | None:intergenic | 25.0% |
| ! | TATCATCTCGAAATATTCTT+CGG | - | chr6_1:84957753-84957772 | Msa0895930:five_prime_UTR | 25.0% |
| ACTTGTAACAACATTCTTTC+TGG | + | chr6_1:84953009-84953028 | None:intergenic | 30.0% | |
| !! | GTTAGACTAGCAGTTATTTT+AGG | - | chr6_1:84953170-84953189 | Msa0895930:intron | 30.0% |
| GAAGTTATTGAGTGGTTATT+GGG | - | chr6_1:84953312-84953331 | Msa0895930:intron | 30.0% | |
| ATTGTGTGTCTGTAATATTC+TGG | - | chr6_1:84953425-84953444 | Msa0895930:intron | 30.0% | |
| TGGGATACATTAAAGAGAAA+TGG | + | chr6_1:84953968-84953987 | None:intergenic | 30.0% | |
| TAAGGGAGATATTAAAGCAT+GGG | + | chr6_1:84953987-84954006 | None:intergenic | 30.0% | |
| ATAAGGGAGATATTAAAGCA+TGG | + | chr6_1:84953988-84954007 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTAGAATGCCTTGT+TGG | - | chr6_1:84954047-84954066 | Msa0895930:intron | 30.0% |
| AGTTGCATATATTACCAACA+AGG | + | chr6_1:84954064-84954083 | None:intergenic | 30.0% | |
| TGACTTTCGACGTAAATATT+TGG | - | chr6_1:84954400-84954419 | Msa0895930:intron | 30.0% | |
| TTTATGTAAATGTGCATACC+AGG | - | chr6_1:84954582-84954601 | Msa0895930:intron | 30.0% | |
| CAAAAGGATCTGATAATTGT+CGG | + | chr6_1:84954735-84954754 | None:intergenic | 30.0% | |
| TTACTATACGTTTACAAGCA+TGG | - | chr6_1:84954866-84954885 | Msa0895930:intron | 30.0% | |
| ! | GTAGAAGTACATGTAAATTC+AGG | - | chr6_1:84954914-84954933 | Msa0895930:intron | 30.0% |
| TCAAATACATTATCCAAGGT+TGG | + | chr6_1:84954943-84954962 | None:intergenic | 30.0% | |
| TACAGTTTACACAATCAGAT+AGG | + | chr6_1:84955139-84955158 | None:intergenic | 30.0% | |
| ATTAAGATTTGGCTATTGCA+CGG | - | chr6_1:84955160-84955179 | Msa0895930:intron | 30.0% | |
| GAACTAACAAAAACTACATG+AGG | - | chr6_1:84955276-84955295 | Msa0895930:intron | 30.0% | |
| !!! | CTACTTTTTCAGCTATAGAA+GGG | + | chr6_1:84955402-84955421 | None:intergenic | 30.0% |
| !!! | ACTACTTTTTCAGCTATAGA+AGG | + | chr6_1:84955403-84955422 | None:intergenic | 30.0% |
| AGCTGAAAAAGTAGTGAATT+TGG | - | chr6_1:84955408-84955427 | Msa0895930:intron | 30.0% | |
| GCTGAAAAAGTAGTGAATTT+GGG | - | chr6_1:84955409-84955428 | Msa0895930:intron | 30.0% | |
| ! | GATAGATATGTTTGATTCGA+TGG | + | chr6_1:84955466-84955485 | None:intergenic | 30.0% |
| ! | AAGCTTGAATTTCAAGTATG+GGG | - | chr6_1:84955609-84955628 | Msa0895930:intron | 30.0% |
| GTCAATTACCATTCAATGTT+TGG | - | chr6_1:84955848-84955867 | Msa0895930:CDS | 30.0% | |
| CTTCAGTATTTACATAACCT+TGG | - | chr6_1:84955876-84955895 | Msa0895930:intron | 30.0% | |
| ATGACAAGAAGATTGATATC+TGG | - | chr6_1:84956066-84956085 | Msa0895930:intron | 30.0% | |
| ! | GTTTTCCTCTCTAATATATC+AGG | - | chr6_1:84956249-84956268 | Msa0895930:intron | 30.0% |
| TTAGACCTGATATATTAGAG+AGG | + | chr6_1:84956257-84956276 | None:intergenic | 30.0% | |
| AAGAGTGATACAACAAAAGT+TGG | + | chr6_1:84956350-84956369 | None:intergenic | 30.0% | |
| !! | ACTTTTGTTGTATCACTCTT+AGG | - | chr6_1:84956350-84956369 | Msa0895930:CDS | 30.0% |
| GGAACAAAAATGGAATGAAA+TGG | + | chr6_1:84956462-84956481 | None:intergenic | 30.0% | |
| !! | GATTTGGTGTTGTTAAATAG+CGG | - | chr6_1:84956522-84956541 | Msa0895930:intron | 30.0% |
| GTTGCTGTAGAAAAACTATA+TGG | - | chr6_1:84956686-84956705 | Msa0895930:intron | 30.0% | |
| TATATACTCTTTGCAGTTGT+AGG | - | chr6_1:84956841-84956860 | Msa0895930:intron | 30.0% | |
| ATATACTCTTTGCAGTTGTA+GGG | - | chr6_1:84956842-84956861 | Msa0895930:intron | 30.0% | |
| GTAGGGTTATTATTCTTCTT+TGG | - | chr6_1:84956859-84956878 | Msa0895930:intron | 30.0% | |
| CTTATTTCAAAATGATTCCC+CGG | - | chr6_1:84957014-84957033 | Msa0895930:intron | 30.0% | |
| !! | CTTTTTGAAGACAATGCAAA+TGG | + | chr6_1:84957226-84957245 | None:intergenic | 30.0% |
| AGATTGTTTGAGAGAGATTA+TGG | + | chr6_1:84957419-84957438 | None:intergenic | 30.0% | |
| ! | TATTTGGATTGGGTTATTTG+AGG | + | chr6_1:84957478-84957497 | None:intergenic | 30.0% |
| AATATGGGCATATTTGGATT+GGG | + | chr6_1:84957488-84957507 | None:intergenic | 30.0% | |
| TAATATGGGCATATTTGGAT+TGG | + | chr6_1:84957489-84957508 | None:intergenic | 30.0% | |
| ! | GTACCTCACTGAATAATTTT+TGG | + | chr6_1:84957538-84957557 | None:intergenic | 30.0% |
| !!! | AAGATGTCTTTTTTGGAATC+AGG | + | chr6_1:84957598-84957617 | None:intergenic | 30.0% |
| TTCCAAAAAAGACATCTTTG+AGG | - | chr6_1:84957600-84957619 | Msa0895930:intron | 30.0% | |
| AACATTCTTTCTGGACCATA+GGG | + | chr6_1:84953000-84953019 | None:intergenic | 35.0% | |
| !!! | GCAGTTATTTTAGGACAGTT+AGG | - | chr6_1:84953179-84953198 | Msa0895930:intron | 35.0% |
| GTCAGACATAAGAGGATTAT+CGG | - | chr6_1:84953289-84953308 | Msa0895930:intron | 35.0% | |
| TCAGACATAAGAGGATTATC+GGG | - | chr6_1:84953290-84953309 | Msa0895930:intron | 35.0% | |
| ATTATCGGGAAGTTATTGAG+TGG | - | chr6_1:84953304-84953323 | Msa0895930:intron | 35.0% | |
| GGAAGTTATTGAGTGGTTAT+TGG | - | chr6_1:84953311-84953330 | Msa0895930:intron | 35.0% | |
| TTTACAGCTCAGTTGTACAT+TGG | - | chr6_1:84954237-84954256 | Msa0895930:intron | 35.0% | |
| TTACAGCTCAGTTGTACATT+GGG | - | chr6_1:84954238-84954257 | Msa0895930:intron | 35.0% | |
| AGTTGTACATTGGGTATGAA+TGG | - | chr6_1:84954247-84954266 | Msa0895930:intron | 35.0% | |
| TAAAACACAAATACGCACCA+GGG | + | chr6_1:84954333-84954352 | None:intergenic | 35.0% | |
| !! | TCCACTGTTTCTAAGCTATA+AGG | - | chr6_1:84954453-84954472 | Msa0895930:intron | 35.0% |
| !! | CCACTGTTTCTAAGCTATAA+GGG | - | chr6_1:84954454-84954473 | Msa0895930:intron | 35.0% |
| CTCACAATATAGCAGCAAAA+AGG | + | chr6_1:84954550-84954569 | None:intergenic | 35.0% | |
| ATACCAGGTTAAAACCACTA+TGG | - | chr6_1:84954597-84954616 | Msa0895930:intron | 35.0% | |
| TTAAAACCACTATGGTTGGA+CGG | - | chr6_1:84954605-84954624 | Msa0895930:intron | 35.0% | |
| TCAAACCATATTGTCCTTAC+TGG | - | chr6_1:84954632-84954651 | Msa0895930:CDS | 35.0% | |
| CATTTCCAGTAAGGACAATA+TGG | + | chr6_1:84954640-84954659 | None:intergenic | 35.0% | |
| CAAAAGTCTCATTTCCAGTA+AGG | + | chr6_1:84954649-84954668 | None:intergenic | 35.0% | |
| GTTGGATTCTTAAGAGCAAA+AGG | + | chr6_1:84954751-84954770 | None:intergenic | 35.0% | |
| TTAAGATTTGGCTATTGCAC+GGG | - | chr6_1:84955161-84955180 | Msa0895930:intron | 35.0% | |
| ! | ATTAGGCATGTCACAAGTTT+TGG | + | chr6_1:84955228-84955247 | None:intergenic | 35.0% |
| ATGGCTATGTAAAAGCAGTA+AGG | - | chr6_1:84955437-84955456 | Msa0895930:intron | 35.0% | |
| ! | TATCTGATGTGATCTGAGAT+TGG | - | chr6_1:84955482-84955501 | Msa0895930:intron | 35.0% |
| CAACGCAAAAAAGCTATTAG+TGG | + | chr6_1:84955657-84955676 | None:intergenic | 35.0% | |
| ! | TTTGAGTTTCGTCTAATGCA+TGG | - | chr6_1:84955708-84955727 | Msa0895930:intron | 35.0% |
| TTGAGTTTCGTCTAATGCAT+GGG | - | chr6_1:84955709-84955728 | Msa0895930:intron | 35.0% | |
| AAGTGCTTCCAAACATTGAA+TGG | + | chr6_1:84955859-84955878 | None:intergenic | 35.0% | |
| AGTTGCAATGTATTAGTCCA+AGG | + | chr6_1:84955896-84955915 | None:intergenic | 35.0% | |
| AATACATTGCAACTTGAAGC+CGG | - | chr6_1:84955902-84955921 | Msa0895930:intron | 35.0% | |
| GAAGGCTTGAACATGAAATT+TGG | + | chr6_1:84956209-84956228 | None:intergenic | 35.0% | |
| ATTTCATGTTCAAGCCTTCA+AGG | - | chr6_1:84956210-84956229 | Msa0895930:intron | 35.0% | |
| GGGGAGAAAATTACATTTCA+AGG | + | chr6_1:84956305-84956324 | None:intergenic | 35.0% | |
| TCTAAGCAATTCCATCATCA+GGG | + | chr6_1:84956325-84956344 | None:intergenic | 35.0% | |
| ATCTAAGCAATTCCATCATC+AGG | + | chr6_1:84956326-84956345 | None:intergenic | 35.0% | |
| !! | ACAGTGGTTTGTTCAAATTC+TGG | + | chr6_1:84956626-84956645 | None:intergenic | 35.0% |
| ! | ACATTACTTGCTAGGGTAAT+TGG | - | chr6_1:84957039-84957058 | Msa0895930:intron | 35.0% |
| ! | CATTACTTGCTAGGGTAATT+GGG | - | chr6_1:84957040-84957059 | Msa0895930:intron | 35.0% |
| TATGCTTAATGAGAGGAATC+AGG | - | chr6_1:84957126-84957145 | Msa0895930:intron | 35.0% | |
| ATGCAAATGGAAAGATATCG+AGG | + | chr6_1:84957213-84957232 | None:intergenic | 35.0% | |
| TGAAGTTGTTCATCCAAACA+TGG | + | chr6_1:84957311-84957330 | None:intergenic | 35.0% | |
| !!! | TGCCTCAAAGATGTCTTTTT+TGG | + | chr6_1:84957605-84957624 | None:intergenic | 35.0% |
| TTGTAAGTGTATGACAACCA+GGG | + | chr6_1:84957728-84957747 | None:intergenic | 35.0% | |
| TTTGTAAGTGTATGACAACC+AGG | + | chr6_1:84957729-84957748 | None:intergenic | 35.0% | |
| !!! | TTCTTCGGTTTTTTCACACT+TGG | - | chr6_1:84957768-84957787 | Msa0895930:five_prime_UTR | 35.0% |
| GAATCCGTAGCTATCACATA+AGG | - | chr6_1:84952965-84952984 | Msa0895930:CDS | 40.0% | |
| GCATCCTTATGTGATAGCTA+CGG | + | chr6_1:84952972-84952991 | None:intergenic | 40.0% | |
| ATAAGGATGCTGAATCCCTA+TGG | - | chr6_1:84952982-84953001 | Msa0895930:CDS | 40.0% | |
| CAACATTCTTTCTGGACCAT+AGG | + | chr6_1:84953001-84953020 | None:intergenic | 40.0% | |
| AGACCAACTCTCGAACATTT+GGG | - | chr6_1:84953337-84953356 | Msa0895930:intron | 40.0% | |
| AACTCTCGAACATTTGGGAA+GGG | - | chr6_1:84953342-84953361 | Msa0895930:intron | 40.0% | |
| ! | ATGTGCAGCTTTTGTCTTAC+AGG | - | chr6_1:84953547-84953566 | Msa0895930:intron | 40.0% |
| ! | TGTGCAGCTTTTGTCTTACA+GGG | - | chr6_1:84953548-84953567 | Msa0895930:intron | 40.0% |
| TTCTTTGACTCTACACTGTC+AGG | - | chr6_1:84954118-84954137 | Msa0895930:intron | 40.0% | |
| AAAAGCCAGACAACTACAGA+TGG | + | chr6_1:84954147-84954166 | None:intergenic | 40.0% | |
| AAAACACAAATACGCACCAG+GGG | + | chr6_1:84954332-84954351 | None:intergenic | 40.0% | |
| CTAAAACACAAATACGCACC+AGG | + | chr6_1:84954334-84954353 | None:intergenic | 40.0% | |
| CCCTTATAGCTTAGAAACAG+TGG | + | chr6_1:84954457-84954476 | None:intergenic | 40.0% | |
| !!! | CAACCATAGTGGTTTTAACC+TGG | + | chr6_1:84954603-84954622 | None:intergenic | 40.0% |
| CAGGTTAAAACCACTATGGT+TGG | - | chr6_1:84954601-84954620 | Msa0895930:intron | 40.0% | |
| TTGTCCTACAGCAAGTAATG+TGG | - | chr6_1:84954666-84954685 | Msa0895930:CDS | 40.0% | |
| TGTCCTACAGCAAGTAATGT+GGG | - | chr6_1:84954667-84954686 | Msa0895930:CDS | 40.0% | |
| !! | TATCCCACATTACTTGCTGT+AGG | + | chr6_1:84954673-84954692 | None:intergenic | 40.0% |
| !! | TCTGATAATTGTCGGTTCTC+AGG | + | chr6_1:84954727-84954746 | None:intergenic | 40.0% |
| ATATGGTAAGACCTGATGCA+AGG | - | chr6_1:84954789-84954808 | Msa0895930:intron | 40.0% | |
| TAAATTCAGGAGACCAACCT+TGG | - | chr6_1:84954927-84954946 | Msa0895930:intron | 40.0% | |
| TTGATTGCCAACAAGAACAG+AGG | - | chr6_1:84955315-84955334 | Msa0895930:intron | 40.0% | |
| TGATTGCCAACAAGAACAGA+GGG | - | chr6_1:84955316-84955335 | Msa0895930:intron | 40.0% | |
| ! | TTGGTTCGAGCACCAAATAA+CGG | - | chr6_1:84955348-84955367 | Msa0895930:intron | 40.0% |
| GTAGTGAATTTGGGTGTCAA+TGG | - | chr6_1:84955418-84955437 | Msa0895930:intron | 40.0% | |
| ! | GTGATCTGAGATTGGAAGAA+AGG | - | chr6_1:84955490-84955509 | Msa0895930:intron | 40.0% |
| ! | CTTGAATTTCAAGTATGGGG+AGG | - | chr6_1:84955612-84955631 | Msa0895930:intron | 40.0% |
| !!! | AGCTTTTTTGCGTTGTCACA+TGG | - | chr6_1:84955662-84955681 | Msa0895930:intron | 40.0% |
| TGAGTTTCGTCTAATGCATG+GGG | - | chr6_1:84955710-84955729 | Msa0895930:intron | 40.0% | |
| ! | CTTGAAGCCGGAGAATATTT+TGG | - | chr6_1:84955914-84955933 | Msa0895930:intron | 40.0% |
| TGGACTGAACAAATGAGCAA+AGG | + | chr6_1:84956007-84956026 | None:intergenic | 40.0% | |
| TTTGCTCATTTGTTCAGTCC+AGG | - | chr6_1:84956006-84956025 | Msa0895930:CDS | 40.0% | |
| AAGATTGATATCTGGTCCCT+TGG | - | chr6_1:84956074-84956093 | Msa0895930:intron | 40.0% | |
| ATCTTGGCAGAACTTTGTAC+TGG | - | chr6_1:84956101-84956120 | Msa0895930:intron | 40.0% | |
| ! | GAGCATTTTATGTGCCTTGA+AGG | + | chr6_1:84956227-84956246 | None:intergenic | 40.0% |
| ! | GTAATTTTCTCCCCTGATGA+TGG | - | chr6_1:84956311-84956330 | Msa0895930:intron | 40.0% |
| CTAAGCAATTCCATCATCAG+GGG | + | chr6_1:84956324-84956343 | None:intergenic | 40.0% | |
| ! | ATGAAATGGGACAGCTTGTT+TGG | + | chr6_1:84956448-84956467 | None:intergenic | 40.0% |
| ACTGCGATAATGCAGAACAA+TGG | + | chr6_1:84956578-84956597 | None:intergenic | 40.0% | |
| TCTGGTACACAACAGTTCTA+TGG | + | chr6_1:84956608-84956627 | None:intergenic | 40.0% | |
| ! | ACCACTGTTTTATGCTATCC+AGG | - | chr6_1:84956638-84956657 | Msa0895930:intron | 40.0% |
| TCCTGGATAGCATAAAACAG+TGG | + | chr6_1:84956642-84956661 | None:intergenic | 40.0% | |
| CTAACTAGTGTTGTCAATCC+TGG | + | chr6_1:84956659-84956678 | None:intergenic | 40.0% | |
| TTTGGGTGAAACTGTGAAAG+TGG | - | chr6_1:84956877-84956896 | Msa0895930:intron | 40.0% | |
| ATTGGGATCATCAGTCCTAT+TGG | - | chr6_1:84957057-84957076 | Msa0895930:intron | 40.0% | |
| GCTAGCATACTTTGACCAAT+AGG | + | chr6_1:84957075-84957094 | None:intergenic | 40.0% | |
| GGTCAAAGTATGCTAGCAAA+AGG | - | chr6_1:84957078-84957097 | Msa0895930:intron | 40.0% | |
| AAGTATGCTAGCAAAAGGAC+AGG | - | chr6_1:84957083-84957102 | Msa0895930:intron | 40.0% | |
| TCGTGTATATTGGCCATGTT+TGG | - | chr6_1:84957295-84957314 | Msa0895930:intron | 40.0% | |
| ! | GGTACTGTGTATTGATATGC+AGG | - | chr6_1:84957553-84957572 | Msa0895930:intron | 40.0% |
| TTGATATGCAGGAAAGCAAC+AGG | - | chr6_1:84957564-84957583 | Msa0895930:intron | 40.0% | |
| ! | TTTGAGGCATAGATTACCGA+TGG | - | chr6_1:84957616-84957635 | Msa0895930:intron | 40.0% |
| TTGAGGCATAGATTACCGAT+GGG | - | chr6_1:84957617-84957636 | Msa0895930:intron | 40.0% | |
| ! | TTTAGAGCTTCAGATGCAGA+AGG | + | chr6_1:84957701-84957720 | None:intergenic | 40.0% |
| TGTAAGTGTATGACAACCAG+GGG | + | chr6_1:84957727-84957746 | None:intergenic | 40.0% | |
| AATGCTTGTGACCTGCAGAA+AGG | - | chr6_1:84952941-84952960 | Msa0895930:CDS | 45.0% | |
| AGAGAAGGGTCAGACATAAG+AGG | - | chr6_1:84953281-84953300 | Msa0895930:intron | 45.0% | |
| GAGACCAACTCTCGAACATT+TGG | - | chr6_1:84953336-84953355 | Msa0895930:intron | 45.0% | |
| CTTCCCAAATGTTCGAGAGT+TGG | + | chr6_1:84953343-84953362 | None:intergenic | 45.0% | |
| CAACTCTCGAACATTTGGGA+AGG | - | chr6_1:84953341-84953360 | Msa0895930:intron | 45.0% | |
| ACTCTCGAACATTTGGGAAG+GGG | - | chr6_1:84953343-84953362 | Msa0895930:intron | 45.0% | |
| GGAAACCATCTGTAGTTGTC+TGG | - | chr6_1:84954139-84954158 | Msa0895930:intron | 45.0% | |
| TCTCACACCACTGTTCGAAA+GGG | - | chr6_1:84954196-84954215 | Msa0895930:intron | 45.0% | |
| ! | ACCACTGTTCGAAAGGGTAT+TGG | - | chr6_1:84954202-84954221 | Msa0895930:intron | 45.0% |
| !! | CCACTGTTCGAAAGGGTATT+GGG | - | chr6_1:84954203-84954222 | Msa0895930:intron | 45.0% |
| AAGATACGTCGAGATGCAGA+AGG | + | chr6_1:84954288-84954307 | None:intergenic | 45.0% | |
| !! | GCAGTGCTCTGGTATTGATA+TGG | - | chr6_1:84954772-84954791 | Msa0895930:intron | 45.0% |
| ! | AGACCTGATGCAAGGTTTTG+TGG | - | chr6_1:84954797-84954816 | Msa0895930:intron | 45.0% |
| ! | TGGAGGATGTTCTGAATGCA+TGG | - | chr6_1:84954817-84954836 | Msa0895930:intron | 45.0% |
| GGAAGGATAGGGAATAGAGA+CGG | - | chr6_1:84955189-84955208 | Msa0895930:intron | 45.0% | |
| GATAGGGAATAGAGACGGTA+GGG | - | chr6_1:84955194-84955213 | Msa0895930:intron | 45.0% | |
| GATTGCCAACAAGAACAGAG+GGG | - | chr6_1:84955317-84955336 | Msa0895930:intron | 45.0% | |
| !! | ATTTGGTGCTCGAACCAATC+TGG | + | chr6_1:84955346-84955365 | None:intergenic | 45.0% |
| TGGTTCGAGCACCAAATAAC+GGG | - | chr6_1:84955349-84955368 | Msa0895930:intron | 45.0% | |
| !! | ACAAAGAGTGCCCCGTTATT+TGG | + | chr6_1:84955363-84955382 | None:intergenic | 45.0% |
| ! | AAATAACGGGGCACTCTTTG+TGG | - | chr6_1:84955362-84955381 | Msa0895930:intron | 45.0% |
| TAAAAGCTACAGCCGATGTG+AGG | - | chr6_1:84955938-84955957 | Msa0895930:intron | 45.0% | |
| CAATGACCTTCACCTCACAT+CGG | + | chr6_1:84955953-84955972 | None:intergenic | 45.0% | |
| GAGGTGAAGGTCATTGATCT+TGG | - | chr6_1:84955957-84955976 | Msa0895930:intron | 45.0% | |
| ! | AATAACCTCAGGAGCACGAT+AGG | + | chr6_1:84956033-84956052 | None:intergenic | 45.0% |
| TTCTGCCAAGATGCATCCAA+GGG | + | chr6_1:84956093-84956112 | None:intergenic | 45.0% | |
| AAATAGCGGCTATAGCGTAG+TGG | - | chr6_1:84956536-84956555 | Msa0895930:intron | 45.0% | |
| GTTCTGCATTATCGCAGTAG+TGG | - | chr6_1:84956580-84956599 | Msa0895930:intron | 45.0% | |
| ACCCTAGCAAGTAATGTTGC+CGG | + | chr6_1:84957036-84957055 | None:intergenic | 45.0% | |
| TGAGGCATAGATTACCGATG+GGG | - | chr6_1:84957618-84957637 | Msa0895930:intron | 45.0% | |
| CTTTGTTGCTCATTTGCTCG+AGG | - | chr6_1:84957658-84957677 | Msa0895930:exon | 45.0% | |
| CTACGGATTCTCCTTTCTGC+AGG | + | chr6_1:84952955-84952974 | None:intergenic | 50.0% | |
| CACACCAAGATTCGAGAGCT+TGG | + | chr6_1:84953374-84953393 | None:intergenic | 50.0% | |
| GTCTCACACCACTGTTCGAA+AGG | - | chr6_1:84954195-84954214 | Msa0895930:intron | 50.0% | |
| CCCAATACCCTTTCGAACAG+TGG | + | chr6_1:84954206-84954225 | None:intergenic | 50.0% | |
| AGAATCCAACTGCAGTGCTC+TGG | - | chr6_1:84954761-84954780 | Msa0895930:CDS | 50.0% | |
| !! | CAATACCAGAGCACTGCAGT+TGG | + | chr6_1:84954769-84954788 | None:intergenic | 50.0% |
| CCTCCACAAAACCTTGCATC+AGG | + | chr6_1:84954803-84954822 | None:intergenic | 50.0% | |
| !! | CCTGATGCAAGGTTTTGTGG+AGG | - | chr6_1:84954800-84954819 | Msa0895930:intron | 50.0% |
| GGATAGGGAATAGAGACGGT+AGG | - | chr6_1:84955193-84955212 | Msa0895930:intron | 50.0% | |
| GGAATCCCCTCTGTTCTTGT+TGG | + | chr6_1:84955325-84955344 | None:intergenic | 50.0% | |
| GAACAGAGGGGATTCCAGAT+TGG | - | chr6_1:84955329-84955348 | Msa0895930:intron | 50.0% | |
| GGTTCGAGCACCAAATAACG+GGG | - | chr6_1:84955350-84955369 | Msa0895930:intron | 50.0% | |
| TTTCGTCTAATGCATGGGGC+TGG | - | chr6_1:84955714-84955733 | Msa0895930:intron | 50.0% | |
| CGTGCTCCTGAGGTTATTCT+CGG | - | chr6_1:84956035-84956054 | Msa0895930:CDS | 50.0% | |
| GTGCTCCTGAGGTTATTCTC+GGG | - | chr6_1:84956036-84956055 | Msa0895930:CDS | 50.0% | |
| GAAAGCCCGAGAATAACCTC+AGG | + | chr6_1:84956044-84956063 | None:intergenic | 50.0% | |
| GTTCTGCCAAGATGCATCCA+AGG | + | chr6_1:84956094-84956113 | None:intergenic | 50.0% | |
| GGCTGCGTTTGACACAGATA+GGG | + | chr6_1:84956743-84956762 | None:intergenic | 50.0% | |
| AGGCTGCGTTTGACACAGAT+AGG | + | chr6_1:84956744-84956763 | None:intergenic | 50.0% | |
| CCTAGCAAGTAATGTTGCCG+GGG | + | chr6_1:84957034-84957053 | None:intergenic | 50.0% | |
| CCCTAGCAAGTAATGTTGCC+GGG | + | chr6_1:84957035-84957054 | None:intergenic | 50.0% | |
| ! | CCCGGCAACATTACTTGCTA+GGG | - | chr6_1:84957032-84957051 | Msa0895930:intron | 50.0% |
| GAGGCATAGATTACCGATGG+GGG | - | chr6_1:84957619-84957638 | Msa0895930:intron | 50.0% | |
| TAGATTACCGATGGGGGATC+AGG | - | chr6_1:84957625-84957644 | Msa0895930:intron | 50.0% | |
| AGATTACCGATGGGGGATCA+GGG | - | chr6_1:84957626-84957645 | Msa0895930:intron | 50.0% | |
| ATGCAGAAGGTCGCTTCTTC+TGG | + | chr6_1:84957688-84957707 | None:intergenic | 50.0% | |
| CGAACATTTGGGAAGGGGAG+AGG | - | chr6_1:84953348-84953367 | Msa0895930:intron | 55.0% | |
| GAGGCCAAGCTCTCGAATCT+TGG | - | chr6_1:84953367-84953386 | Msa0895930:intron | 55.0% | |
| GAGACTCCGTCCAACCATAG+TGG | + | chr6_1:84954614-84954633 | None:intergenic | 55.0% | |
| TTGGCTATTGCACGGGTGCA+CGG | - | chr6_1:84955168-84955187 | Msa0895930:intron | 55.0% | |
| CTACAGCCGATGTGAGGTGA+AGG | - | chr6_1:84955944-84955963 | Msa0895930:intron | 55.0% | |
| CTGGTCCCTTGGATGCATCT+TGG | - | chr6_1:84956085-84956104 | Msa0895930:intron | 55.0% | |
| CCCCGGCAACATTACTTGCT+AGG | - | chr6_1:84957031-84957050 | Msa0895930:intron | 55.0% | |
| ATGAAGCCCTGATCCCCCAT+CGG | + | chr6_1:84957635-84957654 | None:intergenic | 55.0% | |
| !! | CTGAAGCTCTAAAGCACCCC+TGG | - | chr6_1:84957708-84957727 | Msa0895930:five_prime_UTR | 55.0% |
| ATGCAATCCATGCCTGCCCC+TGG | - | chr6_1:84954313-84954332 | Msa0895930:intron | 60.0% | |
| CACAAATACGCACCAGGGGC+AGG | + | chr6_1:84954328-84954347 | None:intergenic | 60.0% | |
| CTATTGCACGGGTGCACGGA+AGG | - | chr6_1:84955172-84955191 | Msa0895930:intron | 60.0% | |
| CACGGGTGCACGGAAGGATA+GGG | - | chr6_1:84955178-84955197 | Msa0895930:intron | 60.0% | |
| CGTCTAATGCATGGGGCTGG+AGG | - | chr6_1:84955717-84955736 | Msa0895930:intron | 60.0% | |
| ! | CTCAGGAGCACGATAGGACC+TGG | + | chr6_1:84956027-84956046 | None:intergenic | 60.0% |
| CAGGTCCTATCGTGCTCCTG+AGG | - | chr6_1:84956025-84956044 | Msa0895930:CDS | 60.0% | |
| ATACGCACCAGGGGCAGGCA+TGG | + | chr6_1:84954323-84954342 | None:intergenic | 65.0% | |
| GCACGGGTGCACGGAAGGAT+AGG | - | chr6_1:84955177-84955196 | Msa0895930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 84952871 | 84957793 | 84952871 | ID=Msa0895930;Name=Msa0895930 |
| chr6_1 | mRNA | 84952871 | 84957793 | 84952871 | ID=Msa0895930-mRNA-1;Parent=Msa0895930;Name=Msa0895930-mRNA-1;_AED=0.46;_eAED=0.46;_QI=130|0.33|0.28|1|0.83|0.71|7|0|290 |
| chr6_1 | exon | 84952871 | 84953089 | 84952871 | ID=Msa0895930-mRNA-1:exon:14350;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84953611 | 84953652 | 84953611 | ID=Msa0895930-mRNA-1:exon:14349;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84954618 | 84954782 | 84954618 | ID=Msa0895930-mRNA-1:exon:14348;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84955739 | 84955888 | 84955739 | ID=Msa0895930-mRNA-1:exon:14347;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84955985 | 84956060 | 84955985 | ID=Msa0895930-mRNA-1:exon:14346;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84956330 | 84956524 | 84956330 | ID=Msa0895930-mRNA-1:exon:14345;Parent=Msa0895930-mRNA-1 |
| chr6_1 | exon | 84957638 | 84957793 | 84957638 | ID=Msa0895930-mRNA-1:exon:14344;Parent=Msa0895930-mRNA-1 |
| chr6_1 | five_prime_UTR | 84957664 | 84957793 | 84957664 | ID=Msa0895930-mRNA-1:five_prime_utr;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84957638 | 84957663 | 84957638 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84956330 | 84956524 | 84956330 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84955985 | 84956060 | 84955985 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84955739 | 84955888 | 84955739 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84954618 | 84954782 | 84954618 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84953611 | 84953652 | 84953611 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| chr6_1 | CDS | 84952871 | 84953089 | 84952871 | ID=Msa0895930-mRNA-1:cds;Parent=Msa0895930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
