Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895980 | AES76151.1 | 91.045 | 134 | 12 | 0 | 1 | 134 | 88 | 221 | 3.46e-83 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895980 | sp|Q568K5|NAA40_DANRE | 37.500 | 128 | 56 | 2 | 7 | 134 | 88 | 191 | 7.57e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895980 | G7KHW9 | 91.045 | 134 | 12 | 0 | 1 | 134 | 88 | 221 | 1.65e-83 | 254 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0895980 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895980 | MtrunA17_Chr6g0479551 | 91.045 | 134 | 12 | 0 | 1 | 134 | 88 | 221 | 3.33e-87 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895980 | AT1G18335.1 | 58.647 | 133 | 48 | 1 | 1 | 133 | 99 | 224 | 1.56e-45 | 149 |
| Msa0895980 | AT1G18335.3 | 58.647 | 133 | 48 | 1 | 1 | 133 | 99 | 224 | 2.23e-45 | 149 |
| Msa0895980 | AT1G18335.2 | 58.647 | 133 | 48 | 1 | 1 | 133 | 99 | 224 | 2.23e-45 | 149 |
Find 66 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTACTATATTTCTTATAT+TGG | 0.144804 | 6_1:+85092440 | Msa0895980:three_prime_UTR |
| CATTGGTTCCACGGTGAAAT+TGG | 0.190501 | 6_1:-85088271 | None:intergenic |
| AATTTCATAAAACCTCTTCT+AGG | 0.222593 | 6_1:+85092092 | Msa0895980:three_prime_UTR |
| CTCTGTATATATTGTTTAAC+AGG | 0.263897 | 6_1:-85089612 | None:intergenic |
| TGTACATTACCGATTTGTTT+TGG | 0.337734 | 6_1:+85090685 | Msa0895980:CDS |
| AGCATCTCGGAGTTCATTGC+TGG | 0.366020 | 6_1:-85088248 | None:intergenic |
| ATTTCGAAGCAGCGATAAAC+AGG | 0.379110 | 6_1:-85088488 | None:intergenic |
| AAAACCTCTTCTAGGTTTCA+AGG | 0.381185 | 6_1:+85092100 | Msa0895980:three_prime_UTR |
| GGCGTTGTTGTTTCTTGCAT+TGG | 0.387164 | 6_1:-85088288 | None:intergenic |
| TATCGCTGCTTCGAAATTAA+CGG | 0.393702 | 6_1:+85088494 | Msa0895980:five_prime_UTR |
| CAAAGCAGCTTATAGCATAA+AGG | 0.405600 | 6_1:+85088448 | Msa0895980:five_prime_UTR |
| AATGAACCAGTTAATACTTA+AGG | 0.407673 | 6_1:+85092401 | Msa0895980:intron |
| ATTATAGATAATCAATCTAA+TGG | 0.422142 | 6_1:-85092059 | None:intergenic |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_1:+85090755 | Msa0895980:CDS |
| TTAAGCTAAAACTATATTTG+AGG | 0.437398 | 6_1:+85092020 | Msa0895980:three_prime_UTR |
| ACCAAGGGACCACTATCTTC+TGG | 0.440378 | 6_1:-85090656 | None:intergenic |
| ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_1:+85090742 | Msa0895980:CDS |
| TATTGAGCTTATTGCCCAAA+AGG | 0.445554 | 6_1:+85090796 | Msa0895980:CDS |
| ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_1:-85090560 | None:intergenic |
| TCCAGAAGATAGTGGTCCCT+TGG | 0.454435 | 6_1:+85090655 | Msa0895980:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_1:+85090532 | Msa0895980:CDS |
| CAATCTAATGGTGCACTGAC+TGG | 0.467074 | 6_1:-85092047 | None:intergenic |
| CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_1:+85090488 | Msa0895980:exon |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_1:-85090760 | None:intergenic |
| CCTCTTCTTCCAAAACAAAT+CGG | 0.471830 | 6_1:-85090694 | None:intergenic |
| GAAATATAGTAGAGTTTGCA+AGG | 0.474451 | 6_1:-85092431 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_1:+85090769 | Msa0895980:CDS |
| ACAATATATACAGAGACTTA+AGG | 0.479750 | 6_1:+85089620 | Msa0895980:five_prime_UTR |
| ATCTACACAAATAGCTCATA+CGG | 0.480587 | 6_1:-85092167 | None:intergenic |
| CCGTCGTTGCAGAGAGAAGA+AGG | 0.481736 | 6_1:+85088309 | Msa0895980:five_prime_UTR |
| CTCACAGTGTGTTTAAAGTA+AGG | 0.483200 | 6_1:+85089567 | Msa0895980:five_prime_UTR |
| ACCTTTCTTGTAGAACTGCA+TGG | 0.485776 | 6_1:+85091056 | Msa0895980:intron |
| CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_1:+85090743 | Msa0895980:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.495248 | 6_1:+85090659 | Msa0895980:CDS |
| CCTTCTTCTCTCTGCAACGA+CGG | 0.500060 | 6_1:-85088309 | None:intergenic |
| CCTTTCTTGTAGAACTGCAT+GGG | 0.513452 | 6_1:+85091057 | Msa0895980:intron |
| TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_1:-85090503 | None:intergenic |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_1:+85090754 | Msa0895980:CDS |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_1:+85090514 | Msa0895980:CDS |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_1:+85090480 | Msa0895980:intron |
| TGTTTCTTGCATTGGTTCCA+CGG | 0.532357 | 6_1:-85088280 | None:intergenic |
| TCTTCTGGAAGACTAGTTGA+AGG | 0.533222 | 6_1:-85090641 | None:intergenic |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_1:+85090749 | Msa0895980:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_1:+85090479 | Msa0895980:intron |
| TATATATTGTTTAACAGGAG+AGG | 0.556533 | 6_1:-85089607 | None:intergenic |
| TGTTGTGCTAACTGTTCAAA+AGG | 0.560279 | 6_1:+85091083 | Msa0895980:CDS |
| ACTAGTCTTCCAGAAGATAG+TGG | 0.569548 | 6_1:+85090647 | Msa0895980:CDS |
| ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_1:+85090568 | Msa0895980:CDS |
| TTTCTGTTCTCATATGCAGA+TGG | 0.573975 | 6_1:+85091960 | Msa0895980:intron |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_1:-85090752 | None:intergenic |
| AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_1:+85090744 | Msa0895980:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_1:-85090719 | None:intergenic |
| AAAACCTTGAAACCTAGAAG+AGG | 0.631766 | 6_1:-85092104 | None:intergenic |
| TCTACACAAATAGCTCATAC+GGG | 0.635552 | 6_1:-85092166 | None:intergenic |
| ACGGTGAAATTGGAGCATCT+CGG | 0.652779 | 6_1:-85088261 | None:intergenic |
| ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_1:+85090505 | Msa0895980:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_1:+85090475 | Msa0895980:intron |
| TAATGTACAAATCCAACCAA+GGG | 0.659606 | 6_1:-85090671 | None:intergenic |
| AATTTAGTGCAGAATGCGTG+AGG | 0.665033 | 6_1:-85092129 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.665929 | 6_1:-85090672 | None:intergenic |
| GATAAACAGGAAAAGAAGTG+AGG | 0.667096 | 6_1:-85088475 | None:intergenic |
| GACGACAACAGTGTTGACTG+AGG | 0.677893 | 6_1:+85090613 | Msa0895980:CDS |
| GTGTGTTTAAAGTAAGGACA+TGG | 0.696678 | 6_1:+85089573 | Msa0895980:five_prime_UTR |
| CTTACTTTAAACACACTGTG+AGG | 0.704348 | 6_1:-85089566 | None:intergenic |
| AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_1:+85090498 | Msa0895980:CDS |
| GAGATGCTCCAATTTCACCG+TGG | 0.799244 | 6_1:+85088263 | Msa0895980:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTCAACATAATTA+TGG | + | chr6_1:85089460-85089479 | Msa0895980:intron | 10.0% |
| !! | GAAATACAATTAAATTAATA+AGG | - | chr6_1:85091271-85091290 | None:intergenic | 10.0% |
| !!! | ATTTTTCAATTAAGATAATG+AGG | + | chr6_1:85089057-85089076 | Msa0895980:intron | 15.0% |
| !!! | TTTTTCAATTAAGATAATGA+GGG | + | chr6_1:85089058-85089077 | Msa0895980:intron | 15.0% |
| !!! | ATTATAGTCTTATAAACTAT+AGG | - | chr6_1:85089435-85089454 | None:intergenic | 15.0% |
| !! | TGATAGTATAAACAAAAATA+AGG | - | chr6_1:85090360-85090379 | None:intergenic | 15.0% |
| !! | TTGTTTATACTATCATAAAT+CGG | + | chr6_1:85090365-85090384 | Msa0895980:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | - | chr6_1:85090401-85090420 | None:intergenic | 15.0% |
| !! | TGTATTAGACTTATATATAA+GGG | + | chr6_1:85091419-85091438 | Msa0895980:intron | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | + | chr6_1:85091622-85091641 | Msa0895980:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_1:85091707-85091726 | Msa0895980:intron | 15.0% |
| !! | ATTATAGATAATCAATCTAA+TGG | - | chr6_1:85092062-85092081 | None:intergenic | 15.0% |
| !! | GTTAAGTTTCTTTATTGAAT+TGG | - | chr6_1:85089324-85089343 | None:intergenic | 20.0% |
| !! | TAGTATAAACAAAAATAAGG+TGG | - | chr6_1:85090357-85090376 | None:intergenic | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | - | chr6_1:85090402-85090421 | None:intergenic | 20.0% |
| !!! | TTAGACAAGTTAAGTTTTTT+TGG | - | chr6_1:85090460-85090479 | None:intergenic | 20.0% |
| !! | CCTGTAAATAAATCAATAAA+TGG | - | chr6_1:85090992-85091011 | None:intergenic | 20.0% |
| !!! | CCATTTATTGATTTATTTAC+AGG | + | chr6_1:85090989-85091008 | Msa0895980:intron | 20.0% |
| !! | AATCAAAGATCATATTAGAT+GGG | - | chr6_1:85091029-85091048 | None:intergenic | 20.0% |
| !! | AAATCAAAGATCATATTAGA+TGG | - | chr6_1:85091030-85091049 | None:intergenic | 20.0% |
| !!! | ATTTTTACACTAGTAAACTA+AGG | + | chr6_1:85091124-85091143 | Msa0895980:CDS | 20.0% |
| !! | AGAGATAAAAAATTCAATGA+TGG | - | chr6_1:85091171-85091190 | None:intergenic | 20.0% |
| !! | GTGTATTAGACTTATATATA+AGG | + | chr6_1:85091418-85091437 | Msa0895980:intron | 20.0% |
| !! | ATGAAAGTAGAAAATAGAAA+TGG | - | chr6_1:85091667-85091686 | None:intergenic | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_1:85091697-85091716 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_1:85091764-85091783 | None:intergenic | 20.0% |
| !! | ACAAAGACTAAACATAAAAA+GGG | - | chr6_1:85091807-85091826 | None:intergenic | 20.0% |
| !! | AACAAAGACTAAACATAAAA+AGG | - | chr6_1:85091808-85091827 | None:intergenic | 20.0% |
| !!! | TTTAGTCTTTGTTTTATTGA+CGG | + | chr6_1:85091815-85091834 | Msa0895980:intron | 20.0% |
| !! | TTAAGCTAAAACTATATTTG+AGG | + | chr6_1:85092020-85092039 | Msa0895980:three_prime_UTR | 20.0% |
| !!! | AAATGCCTTTTTTATTAGTT+GGG | + | chr6_1:85092319-85092338 | Msa0895980:intron | 20.0% |
| !! | CTCTACTATATTTCTTATAT+TGG | + | chr6_1:85092440-85092459 | Msa0895980:three_prime_UTR | 20.0% |
| ! | GCATTTAACAAAATCAAAAG+CGG | - | chr6_1:85088523-85088542 | None:intergenic | 25.0% |
| !! | GTTTTTCATAAGATATCATG+AGG | + | chr6_1:85088693-85088712 | Msa0895980:intron | 25.0% |
| !! | CTTATTGAATTTGAAGTGTT+TGG | + | chr6_1:85088926-85088945 | Msa0895980:intron | 25.0% |
| ! | AAGTTTCTTTATTGAATTGG+CGG | - | chr6_1:85089321-85089340 | None:intergenic | 25.0% |
| ! | CTAACTACATTACTAATTAC+AGG | + | chr6_1:85089391-85089410 | Msa0895980:intron | 25.0% |
| ! | TATATATTGTTTAACAGGAG+AGG | - | chr6_1:85089610-85089629 | None:intergenic | 25.0% |
| ! | CTCTGTATATATTGTTTAAC+AGG | - | chr6_1:85089615-85089634 | None:intergenic | 25.0% |
| ! | ACAATATATACAGAGACTTA+AGG | + | chr6_1:85089620-85089639 | Msa0895980:five_prime_UTR | 25.0% |
| ! | TAAGTAACTCTAGTATTGTT+TGG | - | chr6_1:85089691-85089710 | None:intergenic | 25.0% |
| !! | ACAATTATACTTGTTGAGTA+TGG | + | chr6_1:85089740-85089759 | Msa0895980:intron | 25.0% |
| !! | TTACAATGAAGATGCATTTT+TGG | - | chr6_1:85090202-85090221 | None:intergenic | 25.0% |
| ! | AGTTGTTTATACTATCATGA+GGG | + | chr6_1:85090275-85090294 | Msa0895980:intron | 25.0% |
| ! | TTTCAATGAATAAGCTAACT+CGG | - | chr6_1:85090425-85090444 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATTCATTGAAA+TGG | + | chr6_1:85090425-85090444 | Msa0895980:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_1:85090426-85090445 | Msa0895980:intron | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | chr6_1:85090868-85090887 | Msa0895980:intron | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | chr6_1:85091206-85091225 | Msa0895980:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | chr6_1:85091207-85091226 | Msa0895980:intron | 25.0% |
| !!! | ATATTTTCTGGAATGCATTA+AGG | - | chr6_1:85091296-85091315 | None:intergenic | 25.0% |
| !! | AAAAGCAGAGAAATATTTTC+TGG | - | chr6_1:85091308-85091327 | None:intergenic | 25.0% |
| ! | ACAGAATATAGTTATACATG+TGG | - | chr6_1:85091398-85091417 | None:intergenic | 25.0% |
| ! | TAATAATGATTGACATGTTG+AGG | - | chr6_1:85091482-85091501 | None:intergenic | 25.0% |
| ! | TTGGATAAATTTACTTTGGA+AGG | - | chr6_1:85091883-85091902 | None:intergenic | 25.0% |
| ! | TCCAAAGTAAATTTATCCAA+TGG | + | chr6_1:85091883-85091902 | Msa0895980:intron | 25.0% |
| ! | ACCATTGGATAAATTTACTT+TGG | - | chr6_1:85091887-85091906 | None:intergenic | 25.0% |
| ! | AATTTCATAAAACCTCTTCT+AGG | + | chr6_1:85092092-85092111 | Msa0895980:three_prime_UTR | 25.0% |
| !!! | CAAATGCCTTTTTTATTAGT+TGG | + | chr6_1:85092318-85092337 | Msa0895980:intron | 25.0% |
| !!! | AATGCCTTTTTTATTAGTTG+GGG | + | chr6_1:85092320-85092339 | Msa0895980:intron | 25.0% |
| ! | AATGAACCAGTTAATACTTA+AGG | + | chr6_1:85092401-85092420 | Msa0895980:intron | 25.0% |
| GATAAACAGCTTATTTCACA+TGG | + | chr6_1:85088605-85088624 | Msa0895980:intron | 30.0% | |
| CTATAAGCTCAAATACTACT+CGG | + | chr6_1:85089114-85089133 | Msa0895980:intron | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | - | chr6_1:85089545-85089564 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | + | chr6_1:85089543-85089562 | Msa0895980:intron | 30.0% |
| TAAATAAACGCAGACAAGAA+AGG | - | chr6_1:85090075-85090094 | None:intergenic | 30.0% | |
| TACGACAATCATGAACAAAA+GGG | - | chr6_1:85090161-85090180 | None:intergenic | 30.0% | |
| TTACGACAATCATGAACAAA+AGG | - | chr6_1:85090162-85090181 | None:intergenic | 30.0% | |
| TTGTTCATGATTGTCGTAAT+TGG | + | chr6_1:85090163-85090182 | Msa0895980:intron | 30.0% | |
| CAGTTGTTTATACTATCATG+AGG | + | chr6_1:85090274-85090293 | Msa0895980:intron | 30.0% | |
| TTCAATGAATAAGCTAACTC+GGG | - | chr6_1:85090424-85090443 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6_1:85090475-85090494 | Msa0895980:intron | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6_1:85090674-85090693 | None:intergenic | 30.0% | |
| !!! | TGTACATTACCGATTTGTTT+TGG | + | chr6_1:85090685-85090704 | Msa0895980:CDS | 30.0% |
| AGTTCATACACATAAAGTAC+CGG | - | chr6_1:85090722-85090741 | None:intergenic | 30.0% | |
| !! | AACACCATAAAGTACCTTTT+GGG | - | chr6_1:85090813-85090832 | None:intergenic | 30.0% |
| !! | AAACACCATAAAGTACCTTT+TGG | - | chr6_1:85090814-85090833 | None:intergenic | 30.0% |
| TCTTCTTGTAGACATATATG+CGG | - | chr6_1:85091348-85091367 | None:intergenic | 30.0% | |
| CAAATAACTATGTGATGCTA+GGG | - | chr6_1:85091453-85091472 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTTGC+AGG | + | chr6_1:85091633-85091652 | Msa0895980:intron | 30.0% | |
| GATATCTTCACAGATAACTT+GGG | - | chr6_1:85091739-85091758 | None:intergenic | 30.0% | |
| TGATATCTTCACAGATAACT+TGG | - | chr6_1:85091740-85091759 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6_1:85091803-85091822 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6_1:85091804-85091823 | None:intergenic | 30.0% | |
| ! | TCATACGGGAATATGTTTTA+TGG | - | chr6_1:85092155-85092174 | None:intergenic | 30.0% |
| ATCTACACAAATAGCTCATA+CGG | - | chr6_1:85092170-85092189 | None:intergenic | 30.0% | |
| ! | TATTTTACAGCAACTCTAGA+AGG | + | chr6_1:85092219-85092238 | Msa0895980:intron | 30.0% |
| ! | GTTCCATGTTGTAGTAATTT+TGG | + | chr6_1:85092266-85092285 | Msa0895980:intron | 30.0% |
| TTGCCAAAATTACTACAACA+TGG | - | chr6_1:85092272-85092291 | None:intergenic | 30.0% | |
| TTAGTACATCCAAGATATCA+TGG | - | chr6_1:85092374-85092393 | None:intergenic | 30.0% | |
| GAAGATCCTTAAGTATTAAC+TGG | - | chr6_1:85092410-85092429 | None:intergenic | 30.0% | |
| GAAATATAGTAGAGTTTGCA+AGG | - | chr6_1:85092434-85092453 | None:intergenic | 30.0% | |
| TTCAAAAACACTCGTGAATG+AGG | - | chr6_1:85088366-85088385 | None:intergenic | 35.0% | |
| CAAAGCAGCTTATAGCATAA+AGG | + | chr6_1:85088448-85088467 | Msa0895980:five_prime_UTR | 35.0% | |
| GATAAACAGGAAAAGAAGTG+AGG | - | chr6_1:85088478-85088497 | None:intergenic | 35.0% | |
| TATCGCTGCTTCGAAATTAA+CGG | + | chr6_1:85088494-85088513 | Msa0895980:five_prime_UTR | 35.0% | |
| TTACACATTAAGCCTCTGTT+TGG | + | chr6_1:85088583-85088602 | Msa0895980:intron | 35.0% | |
| TAAGCTGTTTATCCAAACAG+AGG | - | chr6_1:85088598-85088617 | None:intergenic | 35.0% | |
| ACCAAGACTTTGTTACTGTT+TGG | + | chr6_1:85088841-85088860 | Msa0895980:intron | 35.0% | |
| ACCAAACAGTAACAAAGTCT+TGG | - | chr6_1:85088845-85088864 | None:intergenic | 35.0% | |
| TAACTGATAAGCTAACTGAC+AGG | + | chr6_1:85088874-85088893 | Msa0895980:intron | 35.0% | |
| AACTGATAAGCTAACTGACA+GGG | + | chr6_1:85088875-85088894 | Msa0895980:intron | 35.0% | |
| TGAGCTTGTATGTTTGGTAA+TGG | - | chr6_1:85089202-85089221 | None:intergenic | 35.0% | |
| AGCATATGAGCTTGTATGTT+TGG | - | chr6_1:85089208-85089227 | None:intergenic | 35.0% | |
| CTTACTTTAAACACACTGTG+AGG | - | chr6_1:85089569-85089588 | None:intergenic | 35.0% | |
| ! | CTCACAGTGTGTTTAAAGTA+AGG | + | chr6_1:85089567-85089586 | Msa0895980:five_prime_UTR | 35.0% |
| ! | GTGTGTTTAAAGTAAGGACA+TGG | + | chr6_1:85089573-85089592 | Msa0895980:five_prime_UTR | 35.0% |
| TTGAGTATGGCTCAAATTCA+CGG | + | chr6_1:85089753-85089772 | Msa0895980:intron | 35.0% | |
| AAATTGTACCATGACCATGA+GGG | - | chr6_1:85089916-85089935 | None:intergenic | 35.0% | |
| TAAATTGTACCATGACCATG+AGG | - | chr6_1:85089917-85089936 | None:intergenic | 35.0% | |
| TCATGGTCATGGTACAATTT+AGG | + | chr6_1:85089916-85089935 | Msa0895980:intron | 35.0% | |
| CATGGTCATGGTACAATTTA+GGG | + | chr6_1:85089917-85089936 | Msa0895980:intron | 35.0% | |
| ATGGTCATGGTACAATTTAG+GGG | + | chr6_1:85089918-85089937 | Msa0895980:intron | 35.0% | |
| ! | GTTTTCCAATAATGCAATGC+TGG | - | chr6_1:85089998-85090017 | None:intergenic | 35.0% |
| GGAAAACTACAACAGTTGTT+CGG | + | chr6_1:85090011-85090030 | Msa0895980:intron | 35.0% | |
| ACAAGAAAGGACATGGAATT+CGG | - | chr6_1:85090062-85090081 | None:intergenic | 35.0% | |
| TTTATCTGTTTGTGTAGAGC+TGG | + | chr6_1:85090091-85090110 | Msa0895980:intron | 35.0% | |
| TTATCTGTTTGTGTAGAGCT+GGG | + | chr6_1:85090092-85090111 | Msa0895980:intron | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | + | chr6_1:85090429-85090448 | Msa0895980:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | + | chr6_1:85090430-85090449 | Msa0895980:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6_1:85090479-85090498 | Msa0895980:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | + | chr6_1:85090480-85090499 | Msa0895980:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | + | chr6_1:85090532-85090551 | Msa0895980:CDS | 35.0% | |
| ACAAATATATAGCGTGCTTC+AGG | - | chr6_1:85090563-85090582 | None:intergenic | 35.0% | |
| ACGCTATATATTTGTGCATG+AGG | + | chr6_1:85090568-85090587 | Msa0895980:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6_1:85090675-85090694 | None:intergenic | 35.0% | |
| CCTCTTCTTCCAAAACAAAT+CGG | - | chr6_1:85090697-85090716 | None:intergenic | 35.0% | |
| TATTGAGCTTATTGCCCAAA+AGG | + | chr6_1:85090796-85090815 | Msa0895980:CDS | 35.0% | |
| !! | ATTGCCCAAAAGGTACTTTA+TGG | + | chr6_1:85090806-85090825 | Msa0895980:intron | 35.0% |
| AAGGACACAACTTATAGTCT+AGG | + | chr6_1:85090887-85090906 | Msa0895980:intron | 35.0% | |
| AGGACACAACTTATAGTCTA+GGG | + | chr6_1:85090888-85090907 | Msa0895980:intron | 35.0% | |
| TGTTGTGCTAACTGTTCAAA+AGG | + | chr6_1:85091083-85091102 | Msa0895980:CDS | 35.0% | |
| GGCTTATACAAAAGCAGTTA+GGG | - | chr6_1:85091250-85091269 | None:intergenic | 35.0% | |
| AGGCTTATACAAAAGCAGTT+AGG | - | chr6_1:85091251-85091270 | None:intergenic | 35.0% | |
| !! | ATATTTCTCTGCTTTTGAGC+AGG | + | chr6_1:85091312-85091331 | Msa0895980:intron | 35.0% |
| GCAAATAACTATGTGATGCT+AGG | - | chr6_1:85091454-85091473 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | - | chr6_1:85091802-85091821 | None:intergenic | 35.0% | |
| ! | TTTCACCACACTTACGATTT+TGG | - | chr6_1:85091921-85091940 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | + | chr6_1:85091960-85091979 | Msa0895980:intron | 35.0% | |
| AAAACCTCTTCTAGGTTTCA+AGG | + | chr6_1:85092100-85092119 | Msa0895980:three_prime_UTR | 35.0% | |
| AAAACCTTGAAACCTAGAAG+AGG | - | chr6_1:85092107-85092126 | None:intergenic | 35.0% | |
| TCTACACAAATAGCTCATAC+GGG | - | chr6_1:85092169-85092188 | None:intergenic | 35.0% | |
| GCTATTTGTGTAGATCATCT+AGG | + | chr6_1:85092175-85092194 | Msa0895980:intron | 35.0% | |
| !!! | CCTTTTTTATTAGTTGGGGT+CGG | + | chr6_1:85092324-85092343 | Msa0895980:intron | 35.0% |
| CAACCAAAACCATGATATCT+TGG | + | chr6_1:85092362-85092381 | Msa0895980:intron | 35.0% | |
| ! | CATCCAAGATATCATGGTTT+TGG | - | chr6_1:85092368-85092387 | None:intergenic | 35.0% |
| !! | TGTTTCTTGCATTGGTTCCA+CGG | - | chr6_1:85088283-85088302 | None:intergenic | 40.0% |
| ! | ACATAACTGTTCCGTTTTGC+AGG | + | chr6_1:85088391-85088410 | Msa0895980:intron | 40.0% |
| ATTTCGAAGCAGCGATAAAC+AGG | - | chr6_1:85088491-85088510 | None:intergenic | 40.0% | |
| ACAAAGTCTTGGTACGTGTT+TGG | - | chr6_1:85088834-85088853 | None:intergenic | 40.0% | |
| AGGGATAAACTAGCTGATAG+TGG | + | chr6_1:85088894-85088913 | Msa0895980:intron | 40.0% | |
| !! | CTAGCTGATAGTGGATAAAC+TGG | + | chr6_1:85088903-85088922 | Msa0895980:intron | 40.0% |
| TCCGCTATAAGTTAGCAGTT+TGG | + | chr6_1:85089236-85089255 | Msa0895980:intron | 40.0% | |
| GCCAAACTGCTAACTTATAG+CGG | - | chr6_1:85089240-85089259 | None:intergenic | 40.0% | |
| !! | AGTCAGACACTCGTCATTTT+AGG | - | chr6_1:85089277-85089296 | None:intergenic | 40.0% |
| TAGATCGTAGTCATAACCCT+AGG | - | chr6_1:85089867-85089886 | None:intergenic | 40.0% | |
| GTTATGACTACGATCTACGA+GGG | + | chr6_1:85089870-85089889 | Msa0895980:intron | 40.0% | |
| AGCTTCCAGCATTGCATTAT+TGG | + | chr6_1:85089990-85090009 | Msa0895980:intron | 40.0% | |
| ! | TGTTCGGTTGTTTGAGATGT+AGG | + | chr6_1:85090027-85090046 | Msa0895980:intron | 40.0% |
| ! | GTTTGAGATGTAGGCACAAT+TGG | + | chr6_1:85090036-85090055 | Msa0895980:intron | 40.0% |
| AGATATCTCTCGTGACTCTT+GGG | - | chr6_1:85090129-85090148 | None:intergenic | 40.0% | |
| TAGATATCTCTCGTGACTCT+TGG | - | chr6_1:85090130-85090149 | None:intergenic | 40.0% | |
| ! | TCTTCTGGAAGACTAGTTGA+AGG | - | chr6_1:85090644-85090663 | None:intergenic | 40.0% |
| !! | ACTAGTCTTCCAGAAGATAG+TGG | + | chr6_1:85090647-85090666 | Msa0895980:CDS | 40.0% |
| !!! | CCGATTTGTTTTGGAAGAAG+AGG | + | chr6_1:85090694-85090713 | Msa0895980:CDS | 40.0% |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_1:85090700-85090719 | Msa0895980:CDS | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_1:85090769-85090788 | Msa0895980:CDS | 40.0% | |
| ACCTTTCTTGTAGAACTGCA+TGG | + | chr6_1:85091056-85091075 | Msa0895980:intron | 40.0% | |
| CCTTTCTTGTAGAACTGCAT+GGG | + | chr6_1:85091057-85091076 | Msa0895980:intron | 40.0% | |
| TGTAGACATATATGCGGTTC+AGG | - | chr6_1:85091342-85091361 | None:intergenic | 40.0% | |
| ! | ATTTACTTTGGAAGGTGACG+TGG | - | chr6_1:85091875-85091894 | None:intergenic | 40.0% |
| ! | ACCACACTTACGATTTTGGA+GGG | - | chr6_1:85091917-85091936 | None:intergenic | 40.0% |
| AATTTAGTGCAGAATGCGTG+AGG | - | chr6_1:85092132-85092151 | None:intergenic | 40.0% | |
| CCGACCCCAACTAATAAAAA+AGG | - | chr6_1:85092327-85092346 | None:intergenic | 40.0% | |
| ! | ACGGTGAAATTGGAGCATCT+CGG | - | chr6_1:85088264-85088283 | None:intergenic | 45.0% |
| !! | CATTGGTTCCACGGTGAAAT+TGG | - | chr6_1:85088274-85088293 | None:intergenic | 45.0% |
| !! | GGCGTTGTTGTTTCTTGCAT+TGG | - | chr6_1:85088291-85088310 | None:intergenic | 45.0% |
| CTTTGCGAGTACCTGCAAAA+CGG | - | chr6_1:85088405-85088424 | None:intergenic | 45.0% | |
| TTTAAACACACTGTGAGGCC+TGG | - | chr6_1:85089564-85089583 | None:intergenic | 45.0% | |
| GGCTCAAATTCACGGATAAG+TGG | + | chr6_1:85089761-85089780 | Msa0895980:intron | 45.0% | |
| TAGGAATGAGCCATGCTCAA+AGG | - | chr6_1:85089848-85089867 | None:intergenic | 45.0% | |
| TTTGAGCATGGCTCATTCCT+AGG | + | chr6_1:85089847-85089866 | Msa0895980:intron | 45.0% | |
| TTGAGCATGGCTCATTCCTA+GGG | + | chr6_1:85089848-85089867 | Msa0895980:intron | 45.0% | |
| GGTTATGACTACGATCTACG+AGG | + | chr6_1:85089869-85089888 | Msa0895980:intron | 45.0% | |
| AACGCAGACAAGAAAGGACA+TGG | - | chr6_1:85090069-85090088 | None:intergenic | 45.0% | |
| TTTGTGTAGAGCTGGGTTTG+CGG | + | chr6_1:85090099-85090118 | Msa0895980:intron | 45.0% | |
| !! | AAAACCTTGCTGTTGTGCCA+AGG | - | chr6_1:85090305-85090324 | None:intergenic | 45.0% |
| ! | GTTTTTGCCTTGAAACCTCG+TGG | + | chr6_1:85090320-85090339 | Msa0895980:intron | 45.0% |
| CTTAACATGGAAGGGCCATA+TGG | + | chr6_1:85090488-85090507 | Msa0895980:exon | 45.0% | |
| TCTTGCCACTCAGATCCATA+TGG | - | chr6_1:85090506-85090525 | None:intergenic | 45.0% | |
| ATATGGATCTGAGTGGCAAG+AGG | + | chr6_1:85090505-85090524 | Msa0895980:CDS | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_1:85090514-85090533 | Msa0895980:CDS | 45.0% | |
| CCCATGCAGTTCTACAAGAA+AGG | - | chr6_1:85091060-85091079 | None:intergenic | 45.0% | |
| !! | CACACTTACGATTTTGGAGG+GGG | - | chr6_1:85091915-85091934 | None:intergenic | 45.0% |
| !! | CCACACTTACGATTTTGGAG+GGG | - | chr6_1:85091916-85091935 | None:intergenic | 45.0% |
| ! | CACCACACTTACGATTTTGG+AGG | - | chr6_1:85091918-85091937 | None:intergenic | 45.0% |
| ! | CAATCTAATGGTGCACTGAC+TGG | - | chr6_1:85092050-85092069 | None:intergenic | 45.0% |
| AGCATCTCGGAGTTCATTGC+TGG | - | chr6_1:85088251-85088270 | None:intergenic | 50.0% | |
| GAGATGCTCCAATTTCACCG+TGG | + | chr6_1:85088263-85088282 | Msa0895980:five_prime_UTR | 50.0% | |
| CCTTCTTCTCTCTGCAACGA+CGG | - | chr6_1:85088312-85088331 | None:intergenic | 50.0% | |
| !!! | ATTTTAGGCGCTGGTTGGCA+AGG | - | chr6_1:85089262-85089281 | None:intergenic | 50.0% |
| !!! | TCGTCATTTTAGGCGCTGGT+TGG | - | chr6_1:85089267-85089286 | None:intergenic | 50.0% |
| !! | ACACTCGTCATTTTAGGCGC+TGG | - | chr6_1:85089271-85089290 | None:intergenic | 50.0% |
| CACTGTGAGGCCTGGAAATA+AGG | - | chr6_1:85089556-85089575 | None:intergenic | 50.0% | |
| ACTCACTATGCTCGAGTGTC+TGG | - | chr6_1:85089787-85089806 | None:intergenic | 50.0% | |
| AGACACTCGAGCATAGTGAG+TGG | + | chr6_1:85089786-85089805 | Msa0895980:intron | 50.0% | |
| GATCTGTAAGCGCAACGTAG+TGG | + | chr6_1:85089808-85089827 | Msa0895980:intron | 50.0% | |
| AGAGGTCATGCCTTTGAGCA+TGG | + | chr6_1:85089835-85089854 | Msa0895980:intron | 50.0% | |
| ATCTACGAGGGTTGAGAGTG+CGG | + | chr6_1:85089882-85089901 | Msa0895980:intron | 50.0% | |
| ACTATCATGAGGGCAAGCCT+TGG | + | chr6_1:85090285-85090304 | Msa0895980:intron | 50.0% | |
| GTGTGATCCACGAGGTTTCA+AGG | - | chr6_1:85090330-85090349 | None:intergenic | 50.0% | |
| ! | GTGGAAAAGTGTGATCCACG+AGG | - | chr6_1:85090338-85090357 | None:intergenic | 50.0% |
| AAGGGCCATATGGATCTGAG+TGG | + | chr6_1:85090498-85090517 | Msa0895980:CDS | 50.0% | |
| !! | GACGACAACAGTGTTGACTG+AGG | + | chr6_1:85090613-85090632 | Msa0895980:CDS | 50.0% |
| ! | TCCAGAAGATAGTGGTCCCT+TGG | + | chr6_1:85090655-85090674 | Msa0895980:CDS | 50.0% |
| ACCAAGGGACCACTATCTTC+TGG | - | chr6_1:85090659-85090678 | None:intergenic | 50.0% | |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_1:85090659-85090678 | Msa0895980:CDS | 50.0% |
| ! | TTGGAGGGGGTACATACCAT+TGG | - | chr6_1:85091902-85091921 | None:intergenic | 50.0% |
| CCCCTCCAAAATCGTAAGTG+TGG | + | chr6_1:85091913-85091932 | Msa0895980:intron | 50.0% | |
| CCGTCGTTGCAGAGAGAAGA+AGG | + | chr6_1:85088309-85088328 | Msa0895980:five_prime_UTR | 55.0% | |
| !! | GCGCAACGTAGTGGATTGAG+AGG | + | chr6_1:85089817-85089836 | Msa0895980:intron | 55.0% |
| ! | TCTACGAGGGTTGAGAGTGC+GGG | + | chr6_1:85089883-85089902 | Msa0895980:intron | 55.0% |
| GGGAAAAGCCCTCATGGTCA+TGG | + | chr6_1:85089905-85089924 | Msa0895980:intron | 55.0% | |
| CAAGCCTTGGCACAACAGCA+AGG | + | chr6_1:85090298-85090317 | Msa0895980:intron | 55.0% | |
| AATCCTTTCCCCTGGACACG+AGG | - | chr6_1:85090755-85090774 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_1:85090754-85090773 | Msa0895980:CDS | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_1:85090755-85090774 | Msa0895980:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_1:85090763-85090782 | None:intergenic | 55.0% | |
| ! | CTACGAGGGTTGAGAGTGCG+GGG | + | chr6_1:85089884-85089903 | Msa0895980:intron | 60.0% |
| ! | TACGAGGGTTGAGAGTGCGG+GGG | + | chr6_1:85089885-85089904 | Msa0895980:intron | 60.0% |
| GTGCGGGGGAAAAGCCCTCA+TGG | + | chr6_1:85089899-85089918 | Msa0895980:intron | 65.0% | |
| ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6_1:85090742-85090761 | Msa0895980:CDS | 65.0% | |
| CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6_1:85090743-85090762 | Msa0895980:CDS | 65.0% | |
| AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6_1:85090744-85090763 | Msa0895980:CDS | 65.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_1:85090749-85090768 | Msa0895980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 85088211 | 85092472 | 85088211 | ID=Msa0895980;Name=Msa0895980 |
| chr6_1 | mRNA | 85088211 | 85092472 | 85088211 | ID=Msa0895980-mRNA-1;Parent=Msa0895980;Name=Msa0895980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=322|1|1|1|0.5|0.28|7|306|134 |
| chr6_1 | exon | 85088211 | 85088346 | 85088211 | ID=Msa0895980-mRNA-1:exon:14363;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85088413 | 85088515 | 85088413 | ID=Msa0895980-mRNA-1:exon:14364;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85089565 | 85089641 | 85089565 | ID=Msa0895980-mRNA-1:exon:14365;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85090488 | 85090817 | 85090488 | ID=Msa0895980-mRNA-1:exon:14366;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85091069 | 85091182 | 85091069 | ID=Msa0895980-mRNA-1:exon:14367;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85091973 | 85092183 | 85091973 | ID=Msa0895980-mRNA-1:exon:14368;Parent=Msa0895980-mRNA-1 |
| chr6_1 | exon | 85092411 | 85092472 | 85092411 | ID=Msa0895980-mRNA-1:exon:14369;Parent=Msa0895980-mRNA-1 |
| chr6_1 | five_prime_UTR | 85088211 | 85088346 | 85088211 | ID=Msa0895980-mRNA-1:five_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | five_prime_UTR | 85088413 | 85088515 | 85088413 | ID=Msa0895980-mRNA-1:five_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | five_prime_UTR | 85089565 | 85089641 | 85089565 | ID=Msa0895980-mRNA-1:five_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | five_prime_UTR | 85090488 | 85090493 | 85090488 | ID=Msa0895980-mRNA-1:five_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | CDS | 85090494 | 85090817 | 85090494 | ID=Msa0895980-mRNA-1:cds;Parent=Msa0895980-mRNA-1 |
| chr6_1 | CDS | 85091069 | 85091149 | 85091069 | ID=Msa0895980-mRNA-1:cds;Parent=Msa0895980-mRNA-1 |
| chr6_1 | three_prime_UTR | 85091150 | 85091182 | 85091150 | ID=Msa0895980-mRNA-1:three_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | three_prime_UTR | 85091973 | 85092183 | 85091973 | ID=Msa0895980-mRNA-1:three_prime_utr;Parent=Msa0895980-mRNA-1 |
| chr6_1 | three_prime_UTR | 85092411 | 85092472 | 85092411 | ID=Msa0895980-mRNA-1:three_prime_utr;Parent=Msa0895980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
