Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896000 | XP_024642081.1 | 87.732 | 269 | 27 | 1 | 1 | 269 | 1 | 263 | 9.97e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896000 | sp|Q568K5|NAA40_DANRE | 35.065 | 231 | 124 | 4 | 23 | 251 | 10 | 216 | 1.34e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896000 | A0A396HG85 | 87.732 | 269 | 27 | 1 | 1 | 269 | 1 | 263 | 4.76e-172 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0896000 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896000 | MtrunA17_Chr6g0479551 | 87.732 | 269 | 27 | 1 | 1 | 269 | 1 | 263 | 9.17e-176 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896000 | AT1G18335.1 | 51.515 | 264 | 116 | 4 | 3 | 262 | 6 | 261 | 1.53e-79 | 241 |
| Msa0896000 | AT1G18335.3 | 51.515 | 264 | 116 | 4 | 3 | 262 | 6 | 261 | 2.73e-79 | 241 |
| Msa0896000 | AT1G18335.2 | 51.515 | 264 | 116 | 4 | 3 | 262 | 6 | 261 | 2.73e-79 | 241 |
Find 59 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTATATATTGTTTAAT+AGG | 0.217352 | 6_1:-85195485 | None:intergenic |
| AATTTCATAAAACCTCTTCT+AGG | 0.222593 | 6_1:+85197951 | Msa0896000:three_prime_UTR |
| TGTACATTACCGATTTGTTT+TGG | 0.337734 | 6_1:+85196552 | Msa0896000:CDS |
| AGCGTCTCCGAGTTCATTGC+TGG | 0.345011 | 6_1:-85193865 | None:intergenic |
| ACCATTGGATCAACTTTAGA+AGG | 0.348153 | 6_1:-85197742 | None:intergenic |
| AATTTCGAAGCAGCGATAAA+CGG | 0.367535 | 6_1:-85194114 | None:intergenic |
| ATTTCGAAGCAGCGATAAAC+GGG | 0.378315 | 6_1:-85194113 | None:intergenic |
| AAAACCTCTTCTAGGTTTCA+AGG | 0.381185 | 6_1:+85197959 | Msa0896000:three_prime_UTR |
| TATCGCTGCTTCGAAATTAA+CGG | 0.408605 | 6_1:+85194119 | Msa0896000:CDS |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_1:+85196622 | Msa0896000:CDS |
| CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6_1:+85194073 | Msa0896000:CDS |
| ACCAAGGGACCACTATCTTC+TGG | 0.440378 | 6_1:-85196523 | None:intergenic |
| ATATATACAAAGACTTCTTA+AGG | 0.442688 | 6_1:+85195496 | Msa0896000:CDS |
| ATTATAGATAATCAATCTAA+TGG | 0.444145 | 6_1:-85197918 | None:intergenic |
| ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_1:+85196609 | Msa0896000:CDS |
| ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_1:-85196427 | None:intergenic |
| TCCAGAAGATAGTGGTCCCT+TGG | 0.454435 | 6_1:+85196522 | Msa0896000:CDS |
| AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_1:+85196399 | Msa0896000:CDS |
| CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_1:+85196355 | Msa0896000:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_1:-85196627 | None:intergenic |
| CCTCTTCTTCCAAAACAAAT+CGG | 0.471830 | 6_1:-85196561 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_1:+85196636 | Msa0896000:CDS |
| CTCTCAGTGTGTTTAACGTC+AGG | 0.484898 | 6_1:+85195440 | Msa0896000:CDS |
| CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_1:+85196610 | Msa0896000:CDS |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.495248 | 6_1:+85196526 | Msa0896000:CDS |
| TATTGAGCTTATCGCCCAAA+AGG | 0.504926 | 6_1:+85196663 | Msa0896000:CDS |
| TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_1:-85196370 | None:intergenic |
| TATATATTGTTTAATAGGAG+AGG | 0.517646 | 6_1:-85195480 | None:intergenic |
| GGCGTTGTTGTGAGTTGCAT+TGG | 0.520695 | 6_1:-85193905 | None:intergenic |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_1:+85196621 | Msa0896000:CDS |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_1:+85196381 | Msa0896000:CDS |
| TTGCAGAACATTTAATGATG+AGG | 0.526434 | 6_1:+85197861 | Msa0896000:CDS |
| ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_1:+85196347 | Msa0896000:intron |
| TCTTCTGGAAGACTAGTTGA+AGG | 0.533222 | 6_1:-85196508 | None:intergenic |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_1:+85196616 | Msa0896000:CDS |
| TGTCGTGCTAACTGTTCAAA+AGG | 0.539000 | 6_1:+85196951 | Msa0896000:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_1:+85196346 | Msa0896000:intron |
| ACCTTCTAAAGTTGATCCAA+TGG | 0.555355 | 6_1:+85197741 | Msa0896000:CDS |
| ACTAGTCTTCCAGAAGATAG+TGG | 0.569548 | 6_1:+85196514 | Msa0896000:CDS |
| ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_1:+85196435 | Msa0896000:CDS |
| TAACCTTCTCTCTGTTACGA+CGG | 0.587012 | 6_1:-85193926 | None:intergenic |
| TGTAAAACCAGCAATGAACT+CGG | 0.592834 | 6_1:+85193858 | Msa0896000:exon |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_1:-85196619 | None:intergenic |
| AAAACCTTGAAACCTAGAAG+AGG | 0.606069 | 6_1:-85197963 | None:intergenic |
| GTGTGTTTAACGTCAGGACA+TGG | 0.610060 | 6_1:+85195446 | Msa0896000:CDS |
| AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_1:+85196611 | Msa0896000:CDS |
| AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_1:-85196586 | None:intergenic |
| TGTGAGTTGCATTGGTACCA+CGG | 0.649796 | 6_1:-85193897 | None:intergenic |
| ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_1:+85196372 | Msa0896000:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_1:+85196342 | Msa0896000:intron |
| TAATGTACAAATCCAACCAA+GGG | 0.659606 | 6_1:-85196538 | None:intergenic |
| CATTGGTACCACGGTCACGT+TGG | 0.662266 | 6_1:-85193888 | None:intergenic |
| ACGCCGTCGTAACAGAGAGA+AGG | 0.663934 | 6_1:+85193923 | Msa0896000:CDS |
| GTAATGTACAAATCCAACCA+AGG | 0.665929 | 6_1:-85196539 | None:intergenic |
| ATCAACTTTAGAAGGTGACG+TGG | 0.674095 | 6_1:-85197734 | None:intergenic |
| GACGACAACAGTGTTGACTG+AGG | 0.677893 | 6_1:+85196480 | Msa0896000:CDS |
| GAGACGCTCCAACGTGACCG+TGG | 0.690908 | 6_1:+85193880 | Msa0896000:CDS |
| GATAAACGGGAAAAGAAGCG+AGG | 0.710792 | 6_1:-85194100 | None:intergenic |
| AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_1:+85196365 | Msa0896000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATGTTGAAATATTAA+TGG | - | chr6_1:85195333-85195352 | None:intergenic | 10.0% |
| !! | TTAATATTTCAACATAATTA+TGG | + | chr6_1:85195333-85195352 | Msa0896000:intron | 10.0% |
| !! | GAAATACAATTAAATTAATA+AGG | - | chr6_1:85197139-85197158 | None:intergenic | 10.0% |
| !! | ATATAATATAGATATATATG+TGG | - | chr6_1:85197265-85197284 | None:intergenic | 10.0% |
| !! | ATTAGTTATATGATTATGAT+CGG | + | chr6_1:85194174-85194193 | Msa0896000:intron | 15.0% |
| !! | ATATTAGATAAACTAACTTA+TGG | + | chr6_1:85194771-85194790 | Msa0896000:intron | 15.0% |
| !!! | TTTTTTCAATTAAGACAATT+TGG | + | chr6_1:85194921-85194940 | Msa0896000:intron | 15.0% |
| !!! | TTTTTCAATTAAGACAATTT+GGG | + | chr6_1:85194922-85194941 | Msa0896000:intron | 15.0% |
| !!! | ATTATAGTCTTATAAACTAT+AGG | - | chr6_1:85195308-85195327 | None:intergenic | 15.0% |
| !! | CTTTGTATATATTGTTTAAT+AGG | - | chr6_1:85195488-85195507 | None:intergenic | 15.0% |
| !! | TGATAGTATAAACAAAAATA+AGG | - | chr6_1:85196227-85196246 | None:intergenic | 15.0% |
| !! | TTGTTTATACTATCATAAAT+CGG | + | chr6_1:85196232-85196251 | Msa0896000:intron | 15.0% |
| !! | CATATCATTAACATAAAAAA+GGG | - | chr6_1:85196268-85196287 | None:intergenic | 15.0% |
| !!! | CAATTTATTGATTTATTTAC+AGG | + | chr6_1:85196856-85196875 | Msa0896000:intron | 15.0% |
| !! | TGTAATAGACTTATATATAA+GGG | + | chr6_1:85197286-85197305 | Msa0896000:intron | 15.0% |
| !! | ATTCTCATAATAAAAAGTTA+AGG | + | chr6_1:85197484-85197503 | Msa0896000:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_1:85197569-85197588 | Msa0896000:intron | 15.0% |
| !!! | ATTTATAACACTTATGATTT+TGG | - | chr6_1:85197780-85197799 | None:intergenic | 15.0% |
| !! | ATTATAGATAATCAATCTAA+TGG | - | chr6_1:85197921-85197940 | None:intergenic | 15.0% |
| !! | TATATATTGTTTAATAGGAG+AGG | - | chr6_1:85195483-85195502 | None:intergenic | 20.0% |
| !! | ATATATACAAAGACTTCTTA+AGG | + | chr6_1:85195496-85195515 | Msa0896000:CDS | 20.0% |
| !! | TAGTATAAACAAAAATAAGG+TGG | - | chr6_1:85196224-85196243 | None:intergenic | 20.0% |
| !! | GCATATCATTAACATAAAAA+AGG | - | chr6_1:85196269-85196288 | None:intergenic | 20.0% |
| !!! | TTAGACAAGTTAAGTTTTTT+TGG | - | chr6_1:85196327-85196346 | None:intergenic | 20.0% |
| !! | TATCAAAGATCATATTAGAT+GGG | - | chr6_1:85196896-85196915 | None:intergenic | 20.0% |
| !! | ATATCAAAGATCATATTAGA+TGG | - | chr6_1:85196897-85196916 | None:intergenic | 20.0% |
| !!! | ATTTTTACACTAGTAAACTA+AGG | + | chr6_1:85196992-85197011 | Msa0896000:CDS | 20.0% |
| !! | GTGTAATAGACTTATATATA+AGG | + | chr6_1:85197285-85197304 | Msa0896000:intron | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_1:85197559-85197578 | None:intergenic | 20.0% |
| !! | GAAAAATCTAGAAAGTAATT+AGG | - | chr6_1:85197626-85197645 | None:intergenic | 20.0% |
| !! | ATGAAGACTAAACATAAAAA+GGG | - | chr6_1:85197669-85197688 | None:intergenic | 20.0% |
| !! | AATGAAGACTAAACATAAAA+AGG | - | chr6_1:85197670-85197689 | None:intergenic | 20.0% |
| ! | AGAAGTTAGTTACACATTAA+AGG | + | chr6_1:85194215-85194234 | Msa0896000:intron | 25.0% |
| ! | TATTTCTCCAATATAGCTTA+CGG | + | chr6_1:85194317-85194336 | Msa0896000:intron | 25.0% |
| ! | ATAAGTTGTTTATCTAGACA+GGG | - | chr6_1:85194477-85194496 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCTAGAC+AGG | - | chr6_1:85194478-85194497 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+AGG | + | chr6_1:85194549-85194568 | Msa0896000:intron | 25.0% |
| ! | ATTTATTTGAGCTTATCTAC+TGG | - | chr6_1:85194663-85194682 | None:intergenic | 25.0% |
| ! | TAGTGTTTGGTAAAAAATAG+CGG | + | chr6_1:85194710-85194729 | Msa0896000:intron | 25.0% |
| ! | ACTTATAAGCGAACTAATAA+CGG | + | chr6_1:85194736-85194755 | Msa0896000:intron | 25.0% |
| ! | TAATGTAGTTAGTACAAGTT+GGG | - | chr6_1:85195256-85195275 | None:intergenic | 25.0% |
| ! | CTAACTACATTACTAATTAC+AGG | + | chr6_1:85195264-85195283 | Msa0896000:intron | 25.0% |
| ! | TAAGTAACTCTAGTATTGTT+TGG | - | chr6_1:85195558-85195577 | None:intergenic | 25.0% |
| !! | ACAATTATACTTGTTGAGTA+TGG | + | chr6_1:85195607-85195626 | Msa0896000:intron | 25.0% |
| !! | TTACAATGAAGATGCAATTT+TGG | - | chr6_1:85196069-85196088 | None:intergenic | 25.0% |
| ! | AGTTGTTTATACTATCATGA+GGG | + | chr6_1:85196142-85196161 | Msa0896000:intron | 25.0% |
| ! | TTTCAATGAATAAGCTAACT+CGG | - | chr6_1:85196292-85196311 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATTCATTGAAA+TGG | + | chr6_1:85196292-85196311 | Msa0896000:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_1:85196293-85196312 | Msa0896000:intron | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | chr6_1:85196735-85196754 | Msa0896000:intron | 25.0% |
| ! | AGAGATAAAAAATTCAACGA+TGG | - | chr6_1:85197039-85197058 | None:intergenic | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | chr6_1:85197074-85197093 | Msa0896000:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | chr6_1:85197075-85197094 | Msa0896000:intron | 25.0% |
| !!! | ATATTTTCTGGAATGCATTA+AGG | - | chr6_1:85197164-85197183 | None:intergenic | 25.0% |
| !! | AAAATCAGACACATATTTTC+TGG | - | chr6_1:85197176-85197195 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTGTAGACATATG+CGG | - | chr6_1:85197216-85197235 | None:intergenic | 25.0% |
| !!! | TTTAGTCTTCATTTTGTTGA+CGG | + | chr6_1:85197677-85197696 | Msa0896000:intron | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | - | chr6_1:85197776-85197795 | None:intergenic | 25.0% |
| !! | TATAACACTTATGATTTTGG+AGG | - | chr6_1:85197777-85197796 | None:intergenic | 25.0% |
| ! | AATTTCATAAAACCTCTTCT+AGG | + | chr6_1:85197951-85197970 | Msa0896000:three_prime_UTR | 25.0% |
| TTCAAAAAAACTCGTGAATG+AGG | - | chr6_1:85193991-85194010 | None:intergenic | 30.0% | |
| GCATTTAACAAACTGAAAAG+CGG | - | chr6_1:85194148-85194167 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr6_1:85194241-85194260 | None:intergenic | 30.0% | |
| TGTGATATAAGCTGCAAATA+AGG | + | chr6_1:85194428-85194447 | Msa0896000:intron | 30.0% | |
| CTTATGGAATTTGATGTGTT+TGG | + | chr6_1:85194787-85194806 | Msa0896000:intron | 30.0% | |
| TAAGCTTGTATGTTTGGTAA+TGG | - | chr6_1:85195061-85195080 | None:intergenic | 30.0% | |
| AGCAAATAAGCTTGTATGTT+TGG | - | chr6_1:85195067-85195086 | None:intergenic | 30.0% | |
| ! | AGTTAGACACTCATCATTTT+AGG | - | chr6_1:85195136-85195155 | None:intergenic | 30.0% |
| ATGAGTGTCTAACTTTCTAA+CGG | + | chr6_1:85195142-85195161 | Msa0896000:intron | 30.0% | |
| ! | AAGTTTGTTCGTTGAATTAG+CGG | - | chr6_1:85195180-85195199 | None:intergenic | 30.0% |
| GTAATGTAGTTAGTACAAGT+TGG | - | chr6_1:85195257-85195276 | None:intergenic | 30.0% | |
| CTGGAAATAAGGTCAAAATT+AGG | - | chr6_1:85195418-85195437 | None:intergenic | 30.0% | |
| !! | CTAATTTTGACCTTATTTCC+AGG | + | chr6_1:85195416-85195435 | Msa0896000:intron | 30.0% |
| TAAATAAACGCAGACAAGAA+AGG | - | chr6_1:85195942-85195961 | None:intergenic | 30.0% | |
| TTTATCTGTTTGTGTAGAGT+TGG | + | chr6_1:85195958-85195977 | Msa0896000:intron | 30.0% | |
| TTATCTGTTTGTGTAGAGTT+GGG | + | chr6_1:85195959-85195978 | Msa0896000:intron | 30.0% | |
| TACGACAATCATGAACAAAA+GGG | - | chr6_1:85196028-85196047 | None:intergenic | 30.0% | |
| TTACGACAATCATGAACAAA+AGG | - | chr6_1:85196029-85196048 | None:intergenic | 30.0% | |
| TTGTTCATGATTGTCGTAAT+TGG | + | chr6_1:85196030-85196049 | Msa0896000:intron | 30.0% | |
| CAGTTGTTTATACTATCATG+AGG | + | chr6_1:85196141-85196160 | Msa0896000:intron | 30.0% | |
| TTCAATGAATAAGCTAACTC+GGG | - | chr6_1:85196291-85196310 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6_1:85196342-85196361 | Msa0896000:intron | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6_1:85196541-85196560 | None:intergenic | 30.0% | |
| !!! | TGTACATTACCGATTTGTTT+TGG | + | chr6_1:85196552-85196571 | Msa0896000:CDS | 30.0% |
| AGTTCATACACATAAAGTAC+CGG | - | chr6_1:85196589-85196608 | None:intergenic | 30.0% | |
| !! | AACACCATAAAGTACCTTTT+GGG | - | chr6_1:85196680-85196699 | None:intergenic | 30.0% |
| !! | AAACACCATAAAGTACCTTT+TGG | - | chr6_1:85196681-85196700 | None:intergenic | 30.0% |
| TATTTACAGGCTTGAGTTTA+AGG | + | chr6_1:85196869-85196888 | Msa0896000:intron | 30.0% | |
| TAATAATGATTGACATGTCG+AGG | - | chr6_1:85197349-85197368 | None:intergenic | 30.0% | |
| AAAAAGTTAAGGATCTTTGC+AGG | + | chr6_1:85197495-85197514 | Msa0896000:intron | 30.0% | |
| !!! | ATAATATTTGGTTTTAGCCC+AGG | + | chr6_1:85197581-85197600 | Msa0896000:intron | 30.0% |
| GATATCTTGATAGATAACCT+GGG | - | chr6_1:85197601-85197620 | None:intergenic | 30.0% | |
| TGATATCTTGATAGATAACC+TGG | - | chr6_1:85197602-85197621 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6_1:85197665-85197684 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6_1:85197666-85197685 | None:intergenic | 30.0% | |
| !! | TAACACTTATGATTTTGGAG+GGG | - | chr6_1:85197775-85197794 | None:intergenic | 30.0% |
| TTGCAGAACATTTAATGATG+AGG | + | chr6_1:85197861-85197880 | Msa0896000:CDS | 30.0% | |
| !!! | TGAGGCTAAAACTATTTTTG+AGG | + | chr6_1:85197879-85197898 | Msa0896000:CDS | 30.0% |
| TGTAAAACCAGCAATGAACT+CGG | + | chr6_1:85193858-85193877 | Msa0896000:exon | 35.0% | |
| CAAAGCAGCATATAGCATAA+AGG | + | chr6_1:85194073-85194092 | Msa0896000:CDS | 35.0% | |
| AATTTCGAAGCAGCGATAAA+CGG | - | chr6_1:85194117-85194136 | None:intergenic | 35.0% | |
| TATCGCTGCTTCGAAATTAA+CGG | + | chr6_1:85194119-85194138 | Msa0896000:CDS | 35.0% | |
| TTACACATTAAAGGCCTGTT+TGG | + | chr6_1:85194224-85194243 | Msa0896000:intron | 35.0% | |
| !! | TGGATTGGTTTATTTGAGCT+TGG | + | chr6_1:85194244-85194263 | Msa0896000:intron | 35.0% |
| !! | GGATTGGTTTATTTGAGCTT+GGG | + | chr6_1:85194245-85194264 | Msa0896000:intron | 35.0% |
| ! | GTTGTTTCCGTAAGCTATAT+TGG | - | chr6_1:85194327-85194346 | None:intergenic | 35.0% |
| AAGCACTTAGGATATTGCTT+GGG | - | chr6_1:85194637-85194656 | None:intergenic | 35.0% | |
| TAAGCACTTAGGATATTGCT+TGG | - | chr6_1:85194638-85194657 | None:intergenic | 35.0% | |
| ATCAATCCAAACAGACCATT+AGG | + | chr6_1:85194681-85194700 | Msa0896000:intron | 35.0% | |
| CAAACACTAACAAAGCCTAA+TGG | - | chr6_1:85194699-85194718 | None:intergenic | 35.0% | |
| !! | CATTAGGCTTTGTTAGTGTT+TGG | + | chr6_1:85194697-85194716 | Msa0896000:intron | 35.0% |
| !! | AAGCGAACTAATAACGGATA+AGG | + | chr6_1:85194742-85194761 | Msa0896000:intron | 35.0% |
| ! | TTGGGTGCAGCTTAAATTTT+GGG | - | chr6_1:85195238-85195257 | None:intergenic | 35.0% |
| TTGAGTATGGCTCAAATTCA+CGG | + | chr6_1:85195620-85195639 | Msa0896000:intron | 35.0% | |
| ! | GTTTTCCAATAATGCAATGC+TGG | - | chr6_1:85195865-85195884 | None:intergenic | 35.0% |
| GGAAAACTACAACAGTTGTT+CGG | + | chr6_1:85195878-85195897 | Msa0896000:intron | 35.0% | |
| AGCTTATTCATTGAAATGGG+TGG | + | chr6_1:85196296-85196315 | Msa0896000:intron | 35.0% | |
| GCTTATTCATTGAAATGGGT+GGG | + | chr6_1:85196297-85196316 | Msa0896000:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6_1:85196346-85196365 | Msa0896000:intron | 35.0% | |
| ATCTACAGCTTAACATGGAA+GGG | + | chr6_1:85196347-85196366 | Msa0896000:intron | 35.0% | |
| AAAGGTGAAGCGTATAGAAA+TGG | + | chr6_1:85196399-85196418 | Msa0896000:CDS | 35.0% | |
| ACAAATATATAGCGTGCTTC+AGG | - | chr6_1:85196430-85196449 | None:intergenic | 35.0% | |
| ACGCTATATATTTGTGCATG+AGG | + | chr6_1:85196435-85196454 | Msa0896000:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6_1:85196542-85196561 | None:intergenic | 35.0% | |
| CCTCTTCTTCCAAAACAAAT+CGG | - | chr6_1:85196564-85196583 | None:intergenic | 35.0% | |
| AAGGACACAACTTATAGTCT+AGG | + | chr6_1:85196754-85196773 | Msa0896000:intron | 35.0% | |
| AGGACACAACTTATAGTCTA+GGG | + | chr6_1:85196755-85196774 | Msa0896000:intron | 35.0% | |
| ! | ACTTTTCTTGTAGAACTGCA+TGG | + | chr6_1:85196924-85196943 | Msa0896000:intron | 35.0% |
| ! | CTTTTCTTGTAGAACTGCAT+GGG | + | chr6_1:85196925-85196944 | Msa0896000:intron | 35.0% |
| GGCTTATACGAAAGCAATTA+GGG | - | chr6_1:85197118-85197137 | None:intergenic | 35.0% | |
| AGGCTTATACGAAAGCAATT+AGG | - | chr6_1:85197119-85197138 | None:intergenic | 35.0% | |
| ! | ATATGTGTCTGATTTTGAGC+AGG | + | chr6_1:85197180-85197199 | Msa0896000:intron | 35.0% |
| CAAATAACCACATGATGCTA+GGG | - | chr6_1:85197320-85197339 | None:intergenic | 35.0% | |
| GACTAAACATAAAAAGGGAG+GGG | - | chr6_1:85197664-85197683 | None:intergenic | 35.0% | |
| !! | ACCTTCTAAAGTTGATCCAA+TGG | + | chr6_1:85197741-85197760 | Msa0896000:CDS | 35.0% |
| ACCATTGGATCAACTTTAGA+AGG | - | chr6_1:85197745-85197764 | None:intergenic | 35.0% | |
| !! | AACACTTATGATTTTGGAGG+GGG | - | chr6_1:85197774-85197793 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | + | chr6_1:85197819-85197838 | Msa0896000:intron | 35.0% | |
| AAAACCTCTTCTAGGTTTCA+AGG | + | chr6_1:85197959-85197978 | Msa0896000:three_prime_UTR | 35.0% | |
| AAAACCTTGAAACCTAGAAG+AGG | - | chr6_1:85197966-85197985 | None:intergenic | 35.0% | |
| TAACCTTCTCTCTGTTACGA+CGG | - | chr6_1:85193929-85193948 | None:intergenic | 40.0% | |
| CGTGAATGAGGAAAGTTTAG+AGG | - | chr6_1:85193979-85193998 | None:intergenic | 40.0% | |
| ATTTCGAAGCAGCGATAAAC+GGG | - | chr6_1:85194116-85194135 | None:intergenic | 40.0% | |
| CATTAAAGGCCTGTTTGGAT+TGG | + | chr6_1:85194229-85194248 | Msa0896000:intron | 40.0% | |
| TTTATCTAGACAGGGACTTC+GGG | - | chr6_1:85194469-85194488 | None:intergenic | 40.0% | |
| GTTTATCTAGACAGGGACTT+CGG | - | chr6_1:85194470-85194489 | None:intergenic | 40.0% | |
| ATCTACTGGCATAAGCACTT+AGG | - | chr6_1:85194649-85194668 | None:intergenic | 40.0% | |
| ACAAAGCCTAATGGTCTGTT+TGG | - | chr6_1:85194690-85194709 | None:intergenic | 40.0% | |
| ACCAAACTGCTAACTGATAG+CGG | - | chr6_1:85195099-85195118 | None:intergenic | 40.0% | |
| !! | TCATCATTTTAGGCTCTGGT+TGG | - | chr6_1:85195126-85195145 | None:intergenic | 40.0% |
| ! | ACACTCATCATTTTAGGCTC+TGG | - | chr6_1:85195130-85195149 | None:intergenic | 40.0% |
| ! | TGGGTGCAGCTTAAATTTTG+GGG | - | chr6_1:85195237-85195256 | None:intergenic | 40.0% |
| ! | GTTGGGTGCAGCTTAAATTT+TGG | - | chr6_1:85195239-85195258 | None:intergenic | 40.0% |
| TAGATCGTAGTCATAACCCT+AGG | - | chr6_1:85195734-85195753 | None:intergenic | 40.0% | |
| GTTATGACTACGATCTACGA+GGG | + | chr6_1:85195737-85195756 | Msa0896000:intron | 40.0% | |
| AAACTGTACCATGACCATGA+GGG | - | chr6_1:85195783-85195802 | None:intergenic | 40.0% | |
| TAAACTGTACCATGACCATG+AGG | - | chr6_1:85195784-85195803 | None:intergenic | 40.0% | |
| TCATGGTCATGGTACAGTTT+AGG | + | chr6_1:85195783-85195802 | Msa0896000:intron | 40.0% | |
| CATGGTCATGGTACAGTTTA+GGG | + | chr6_1:85195784-85195803 | Msa0896000:intron | 40.0% | |
| ATGGTCATGGTACAGTTTAG+GGG | + | chr6_1:85195785-85195804 | Msa0896000:intron | 40.0% | |
| AGCTTCCAGCATTGCATTAT+TGG | + | chr6_1:85195857-85195876 | Msa0896000:intron | 40.0% | |
| ! | TGTTCGGTTGTTTGAGATGT+AGG | + | chr6_1:85195894-85195913 | Msa0896000:intron | 40.0% |
| ! | GTTTGAGATGTAGGCACAAT+TGG | + | chr6_1:85195903-85195922 | Msa0896000:intron | 40.0% |
| TTTGTGTAGAGTTGGGTTTG+CGG | + | chr6_1:85195966-85195985 | Msa0896000:intron | 40.0% | |
| AGATATCTCTCGTGACTCTT+GGG | - | chr6_1:85195996-85196015 | None:intergenic | 40.0% | |
| TAGATATCTCTCGTGACTCT+TGG | - | chr6_1:85195997-85196016 | None:intergenic | 40.0% | |
| ! | TCTTCTGGAAGACTAGTTGA+AGG | - | chr6_1:85196511-85196530 | None:intergenic | 40.0% |
| !! | ACTAGTCTTCCAGAAGATAG+TGG | + | chr6_1:85196514-85196533 | Msa0896000:CDS | 40.0% |
| !!! | CCGATTTGTTTTGGAAGAAG+AGG | + | chr6_1:85196561-85196580 | Msa0896000:CDS | 40.0% |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_1:85196567-85196586 | Msa0896000:CDS | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_1:85196636-85196655 | Msa0896000:CDS | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | + | chr6_1:85196663-85196682 | Msa0896000:CDS | 40.0% | |
| !! | ATCGCCCAAAAGGTACTTTA+TGG | + | chr6_1:85196673-85196692 | Msa0896000:intron | 40.0% |
| TGTCGTGCTAACTGTTCAAA+AGG | + | chr6_1:85196951-85196970 | Msa0896000:CDS | 40.0% | |
| TTTGTAGACATATGCGGTTC+AGG | - | chr6_1:85197210-85197229 | None:intergenic | 40.0% | |
| ATGTTTACCCTAGCATCATG+TGG | + | chr6_1:85197310-85197329 | Msa0896000:intron | 40.0% | |
| GCAAATAACCACATGATGCT+AGG | - | chr6_1:85197321-85197340 | None:intergenic | 40.0% | |
| ! | ATCAACTTTAGAAGGTGACG+TGG | - | chr6_1:85197737-85197756 | None:intergenic | 40.0% |
| !! | ACACTTATGATTTTGGAGGG+GGG | - | chr6_1:85197773-85197792 | None:intergenic | 40.0% |
| ! | TGTGAGTTGCATTGGTACCA+CGG | - | chr6_1:85193900-85193919 | None:intergenic | 45.0% |
| ! | ACAAAACCGTTCCGTTTTGC+AGG | + | chr6_1:85194016-85194035 | Msa0896000:intron | 45.0% |
| CTTTGCGAGTACCTGCAAAA+CGG | - | chr6_1:85194030-85194049 | None:intergenic | 45.0% | |
| GATAAACGGGAAAAGAAGCG+AGG | - | chr6_1:85194103-85194122 | None:intergenic | 45.0% | |
| TCCGCTATCAGTTAGCAGTT+TGG | + | chr6_1:85195095-85195114 | Msa0896000:intron | 45.0% | |
| ! | GGGTGCAGCTTAAATTTTGG+GGG | - | chr6_1:85195236-85195255 | None:intergenic | 45.0% |
| CACTGAGAGACCTGGAAATA+AGG | - | chr6_1:85195429-85195448 | None:intergenic | 45.0% | |
| GTTAAACACACTGAGAGACC+TGG | - | chr6_1:85195437-85195456 | None:intergenic | 45.0% | |
| CTCTCAGTGTGTTTAACGTC+AGG | + | chr6_1:85195440-85195459 | Msa0896000:CDS | 45.0% | |
| GTGTGTTTAACGTCAGGACA+TGG | + | chr6_1:85195446-85195465 | Msa0896000:CDS | 45.0% | |
| GGCTCAAATTCACGGATAAG+TGG | + | chr6_1:85195628-85195647 | Msa0896000:intron | 45.0% | |
| TAGGAATGAGCCATGCTCAA+AGG | - | chr6_1:85195715-85195734 | None:intergenic | 45.0% | |
| TTTGAGCATGGCTCATTCCT+AGG | + | chr6_1:85195714-85195733 | Msa0896000:intron | 45.0% | |
| TTGAGCATGGCTCATTCCTA+GGG | + | chr6_1:85195715-85195734 | Msa0896000:intron | 45.0% | |
| GGTTATGACTACGATCTACG+AGG | + | chr6_1:85195736-85195755 | Msa0896000:intron | 45.0% | |
| AACGCAGACAAGAAAGGACA+TGG | - | chr6_1:85195936-85195955 | None:intergenic | 45.0% | |
| !! | AAAACCTTGCTGTTGTGCCA+AGG | - | chr6_1:85196172-85196191 | None:intergenic | 45.0% |
| ! | GTTTTTGCCTTGAAACCTCG+TGG | + | chr6_1:85196187-85196206 | Msa0896000:intron | 45.0% |
| CTTAACATGGAAGGGCCATA+TGG | + | chr6_1:85196355-85196374 | Msa0896000:CDS | 45.0% | |
| TCTTGCCACTCAGATCCATA+TGG | - | chr6_1:85196373-85196392 | None:intergenic | 45.0% | |
| ATATGGATCTGAGTGGCAAG+AGG | + | chr6_1:85196372-85196391 | Msa0896000:CDS | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_1:85196381-85196400 | Msa0896000:CDS | 45.0% | |
| GGCGTTGTTGTGAGTTGCAT+TGG | - | chr6_1:85193908-85193927 | None:intergenic | 50.0% | |
| CGAGTACCTGCAAAACGGAA+CGG | - | chr6_1:85194025-85194044 | None:intergenic | 50.0% | |
| ACTCACTATGCTCGAGTGTC+TGG | - | chr6_1:85195654-85195673 | None:intergenic | 50.0% | |
| AGACACTCGAGCATAGTGAG+TGG | + | chr6_1:85195653-85195672 | Msa0896000:intron | 50.0% | |
| GATCTGTAAGCGCAACGTAG+TGG | + | chr6_1:85195675-85195694 | Msa0896000:intron | 50.0% | |
| !! | GCGCAACGTAGTGGATTAAG+AGG | + | chr6_1:85195684-85195703 | Msa0896000:intron | 50.0% |
| AGAGGTCATGCCTTTGAGCA+TGG | + | chr6_1:85195702-85195721 | Msa0896000:intron | 50.0% | |
| ATCTACGAGGGTTGAGAGTG+CGG | + | chr6_1:85195749-85195768 | Msa0896000:intron | 50.0% | |
| ACTATCATGAGGGCAAGCCT+TGG | + | chr6_1:85196152-85196171 | Msa0896000:intron | 50.0% | |
| GTGTGATCCACGAGGTTTCA+AGG | - | chr6_1:85196197-85196216 | None:intergenic | 50.0% | |
| ! | GTGGAAAAGTGTGATCCACG+AGG | - | chr6_1:85196205-85196224 | None:intergenic | 50.0% |
| AAGGGCCATATGGATCTGAG+TGG | + | chr6_1:85196365-85196384 | Msa0896000:CDS | 50.0% | |
| !! | GACGACAACAGTGTTGACTG+AGG | + | chr6_1:85196480-85196499 | Msa0896000:CDS | 50.0% |
| ! | TCCAGAAGATAGTGGTCCCT+TGG | + | chr6_1:85196522-85196541 | Msa0896000:CDS | 50.0% |
| ACCAAGGGACCACTATCTTC+TGG | - | chr6_1:85196526-85196545 | None:intergenic | 50.0% | |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_1:85196526-85196545 | Msa0896000:CDS | 50.0% |
| AGCGTCTCCGAGTTCATTGC+TGG | - | chr6_1:85193868-85193887 | None:intergenic | 55.0% | |
| CATTGGTACCACGGTCACGT+TGG | - | chr6_1:85193891-85193910 | None:intergenic | 55.0% | |
| ACGCCGTCGTAACAGAGAGA+AGG | + | chr6_1:85193923-85193942 | Msa0896000:CDS | 55.0% | |
| ! | GACAGGGACTTCGGGCATTT+TGG | - | chr6_1:85194461-85194480 | None:intergenic | 55.0% |
| ! | TCTACGAGGGTTGAGAGTGC+GGG | + | chr6_1:85195750-85195769 | Msa0896000:intron | 55.0% |
| CAAGCCTTGGCACAACAGCA+AGG | + | chr6_1:85196165-85196184 | Msa0896000:intron | 55.0% | |
| AATCCTTTCCCCTGGACACG+AGG | - | chr6_1:85196622-85196641 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_1:85196621-85196640 | Msa0896000:CDS | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_1:85196622-85196641 | Msa0896000:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_1:85196630-85196649 | None:intergenic | 55.0% | |
| ! | CTACGAGGGTTGAGAGTGCG+GGG | + | chr6_1:85195751-85195770 | Msa0896000:intron | 60.0% |
| ! | TACGAGGGTTGAGAGTGCGG+GGG | + | chr6_1:85195752-85195771 | Msa0896000:intron | 60.0% |
| GGGCAAAGCCCTCATGGTCA+TGG | + | chr6_1:85195772-85195791 | Msa0896000:intron | 60.0% | |
| ! | TGGAGGGGGGTGCATACCAT+TGG | - | chr6_1:85197760-85197779 | None:intergenic | 60.0% |
| GAGACGCTCCAACGTGACCG+TGG | + | chr6_1:85193880-85193899 | Msa0896000:CDS | 65.0% | |
| ACAGCTCGAGCCTCGTGTCC+AGG | + | chr6_1:85196609-85196628 | Msa0896000:CDS | 65.0% | |
| CAGCTCGAGCCTCGTGTCCA+GGG | + | chr6_1:85196610-85196629 | Msa0896000:CDS | 65.0% | |
| AGCTCGAGCCTCGTGTCCAG+GGG | + | chr6_1:85196611-85196630 | Msa0896000:CDS | 65.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_1:85196616-85196635 | Msa0896000:CDS | 65.0% | |
| GTGCGGGGGCAAAGCCCTCA+TGG | + | chr6_1:85195766-85195785 | Msa0896000:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 85193829 | 85197985 | 85193829 | ID=Msa0896000;Name=Msa0896000 |
| chr6_1 | mRNA | 85193829 | 85197985 | 85193829 | ID=Msa0896000-mRNA-1;Parent=Msa0896000;Name=Msa0896000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=42|1|1|1|1|1|7|61|269 |
| chr6_1 | exon | 85193829 | 85193960 | 85193829 | ID=Msa0896000-mRNA-1:exon:14370;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85194038 | 85194140 | 85194038 | ID=Msa0896000-mRNA-1:exon:14371;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85195438 | 85195517 | 85195438 | ID=Msa0896000-mRNA-1:exon:14372;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85196355 | 85196684 | 85196355 | ID=Msa0896000-mRNA-1:exon:14373;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85196937 | 85197013 | 85196937 | ID=Msa0896000-mRNA-1:exon:14374;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85197720 | 85197762 | 85197720 | ID=Msa0896000-mRNA-1:exon:14375;Parent=Msa0896000-mRNA-1 |
| chr6_1 | exon | 85197838 | 85197985 | 85197838 | ID=Msa0896000-mRNA-1:exon:14376;Parent=Msa0896000-mRNA-1 |
| chr6_1 | five_prime_UTR | 85193829 | 85193870 | 85193829 | ID=Msa0896000-mRNA-1:five_prime_utr;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85193871 | 85193960 | 85193871 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85194038 | 85194140 | 85194038 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85195438 | 85195517 | 85195438 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85196355 | 85196684 | 85196355 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85196937 | 85197013 | 85196937 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85197720 | 85197762 | 85197720 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | CDS | 85197838 | 85197924 | 85197838 | ID=Msa0896000-mRNA-1:cds;Parent=Msa0896000-mRNA-1 |
| chr6_1 | three_prime_UTR | 85197925 | 85197985 | 85197925 | ID=Msa0896000-mRNA-1:three_prime_utr;Parent=Msa0896000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
