AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896680 MtrunA17_Chr7g0214071 78.855 227 17 6 30 228 33 256 2.46e-112 322
Msa0896680 MtrunA17_Chr7g0243371 86.364 88 12 0 57 144 12 99 1.54e-52 165
Msa0896680 MtrunA17_Chr8g0385991 48.276 174 66 4 30 193 32 191 1.49e-50 164
Msa0896680 MtrunA17_Chr3g0131911 45.312 192 86 5 23 202 29 213 2.36e-49 161
Msa0896680 MtrunA17_Chr5g0417791 52.174 138 54 3 30 157 21 156 2.32e-41 141
Msa0896680 MtrunA17_Chr4g0042561 52.482 141 55 4 30 160 27 165 2.62e-41 141
Msa0896680 MtrunA17_Chr4g0047841 48.718 156 51 3 30 156 33 188 4.07e-41 143
Msa0896680 MtrunA17_Chr2g0318101 42.347 196 81 5 30 197 33 224 1.16e-40 142
Msa0896680 MtrunA17_Chr7g0252971 48.322 149 58 5 30 160 26 173 1.57e-40 141
Msa0896680 MtrunA17_Chr3g0139331 46.763 139 70 2 28 162 27 165 7.64e-39 137
Msa0896680 MtrunA17_Chr2g0326361 50.000 134 57 2 30 153 32 165 8.76e-39 136
Msa0896680 MtrunA17_Chr3g0109821 52.941 136 53 5 30 156 24 157 3.97e-38 140
Msa0896680 MtrunA17_Chr4g0060931 46.939 147 68 4 30 168 35 179 4.68e-38 135
Msa0896680 MtrunA17_Chr1g0200561 47.761 134 61 3 30 156 37 168 1.02e-37 134
Msa0896680 MtrunA17_Chr1g0147421 52.846 123 53 3 44 162 60 181 1.35e-37 134
Msa0896680 MtrunA17_Chr4g0018391 48.889 135 60 4 30 157 25 157 2.11e-37 133
Msa0896680 MtrunA17_Chr4g0017921 44.444 162 77 5 30 181 26 184 2.42e-37 133
Msa0896680 MtrunA17_Chr3g0124761 51.825 137 54 4 30 157 25 158 3.55e-37 131
Msa0896680 MtrunA17_Chr7g0263931 49.254 134 58 3 30 153 29 162 6.41e-37 132
Msa0896680 MtrunA17_Chr2g0316971 46.043 139 67 2 30 160 41 179 1.76e-36 132
Msa0896680 MtrunA17_Chr2g0309891 48.551 138 56 4 30 156 24 157 2.06e-36 130
Msa0896680 MtrunA17_Chr3g0091921 45.578 147 70 3 30 168 34 178 2.78e-36 129
Msa0896680 MtrunA17_Chr8g0372121 37.895 190 109 4 30 212 24 211 1.07e-35 128
Msa0896680 MtrunA17_Chr1g0183741 38.579 197 107 6 30 221 28 215 1.45e-35 127
Msa0896680 MtrunA17_Chr5g0398971 44.928 138 67 3 30 159 25 161 3.22e-35 127
Msa0896680 MtrunA17_Chr6g0481091 36.364 198 109 5 30 218 24 213 3.70e-35 125
Msa0896680 MtrunA17_Chr5g0405211 46.667 135 63 4 30 157 26 158 4.43e-35 127
Msa0896680 MtrunA17_Chr5g0433781 49.635 137 55 5 30 156 24 156 4.73e-35 131
Msa0896680 MtrunA17_Chr6g0461661 43.972 141 71 2 30 162 36 176 4.77e-35 128
Msa0896680 MtrunA17_Chr6g0484441 45.985 137 68 3 30 162 23 157 4.98e-35 127
Msa0896680 MtrunA17_Chr6g0453451 43.537 147 73 4 30 168 38 182 5.27e-35 126
Msa0896680 MtrunA17_Chr4g0056541 45.000 140 68 3 30 162 25 162 6.95e-35 127
Msa0896680 MtrunA17_Chr2g0318081 48.966 145 63 4 30 165 34 176 1.16e-34 126
Msa0896680 MtrunA17_Chr8g0384721 48.201 139 57 4 30 157 25 159 2.17e-34 124
Msa0896680 MtrunA17_Chr2g0309331 45.185 135 66 3 30 157 28 161 3.15e-34 125
Msa0896680 MtrunA17_Chr7g0261411 46.094 128 65 2 30 154 28 154 5.89e-34 123
Msa0896680 MtrunA17_Chr7g0217721 43.750 160 64 6 30 166 37 193 3.25e-33 122
Msa0896680 MtrunA17_Chr7g0253011 46.763 139 64 4 28 156 33 171 4.01e-33 123
Msa0896680 MtrunA17_Chr8g0359921 48.227 141 63 4 30 162 32 170 4.08e-33 122
Msa0896680 MtrunA17_Chr5g0400461 38.095 168 91 3 30 184 24 191 1.20e-32 120
Msa0896680 MtrunA17_Chr5g0417001 40.000 150 76 2 30 165 32 181 1.20e-32 122
Msa0896680 MtrunA17_Chr8g0361731 34.234 222 111 5 30 222 32 247 1.21e-32 122
Msa0896680 MtrunA17_Chr5g0442771 42.012 169 81 5 30 182 36 203 1.33e-32 120
Msa0896680 MtrunA17_Chr2g0312321 40.260 154 78 4 43 189 40 186 2.34e-32 119
Msa0896680 MtrunA17_Chr3g0128111 44.355 124 59 3 41 156 71 192 7.56e-32 116
Msa0896680 MtrunA17_Chr5g0428991 48.780 123 53 3 43 157 56 176 8.46e-32 122
Msa0896680 MtrunA17_Chr8g0346001 40.741 162 71 4 30 173 33 187 1.26e-31 119
Msa0896680 MtrunA17_Chr3g0130731 47.101 138 59 4 30 157 25 158 1.51e-31 117
Msa0896680 MtrunA17_Chr3g0130101 42.384 151 73 5 30 170 25 171 1.77e-31 118
Msa0896680 MtrunA17_Chr3g0128151 46.721 122 55 3 43 156 53 172 4.45e-31 119
Msa0896680 MtrunA17_Chr2g0311651 39.752 161 76 4 30 170 40 199 7.46e-31 115
Msa0896680 MtrunA17_Chr8g0364791 40.397 151 76 4 30 170 24 170 9.92e-31 117
Msa0896680 MtrunA17_Chr7g0217711 50.450 111 48 3 30 136 37 144 1.56e-30 111
Msa0896680 MtrunA17_Chr2g0311661 38.750 160 77 4 30 169 39 197 1.86e-29 111
Msa0896680 MtrunA17_Chr3g0144271 47.788 113 52 3 46 155 58 166 2.46e-29 113
Msa0896680 MtrunA17_Chr4g0054791 41.912 136 70 3 30 156 24 159 4.04e-29 111
Msa0896680 MtrunA17_Chr3g0092671 38.889 162 88 4 18 170 10 169 4.73e-29 114
Msa0896680 MtrunA17_Chr8g0384201 39.073 151 78 4 30 170 24 170 9.07e-29 112
Msa0896680 MtrunA17_Chr6g0453131 40.845 142 68 4 30 156 33 173 1.23e-28 111
Msa0896680 MtrunA17_Chr1g0197361 37.427 171 92 5 13 170 4 172 1.34e-28 112
Msa0896680 MtrunA17_Chr2g0321741 44.444 117 55 3 41 153 21 131 1.42e-28 110
Msa0896680 MtrunA17_Chr4g0076731 42.754 138 72 4 30 163 72 206 1.84e-28 111
Msa0896680 MtrunA17_Chr3g0113001 46.825 126 57 4 47 165 3 125 4.12e-28 108
Msa0896680 MtrunA17_Chr1g0197351 43.421 152 68 4 30 166 60 208 5.80e-28 110
Msa0896680 MtrunA17_Chr1g0201021 35.417 192 104 6 30 210 37 219 7.10e-28 110
Msa0896680 MtrunA17_Chr8g0345671 44.828 116 56 3 43 153 43 155 1.45e-27 108
Msa0896680 MtrunA17_Chr4g0038751 37.584 149 79 4 30 166 33 179 6.51e-26 102
Msa0896680 MtrunA17_Chr3g0113031 47.475 99 37 3 74 162 5 98 1.12e-23 95.9
Msa0896680 MtrunA17_Chr8g0345741 42.424 99 51 2 42 135 22 119 1.04e-21 87.8
Msa0896680 MtrunA17_Chr8g0345691 36.752 117 66 3 43 154 44 157 1.57e-21 92.0
Msa0896680 MtrunA17_Chr2g0321631 32.787 183 102 7 43 210 37 213 2.48e-21 89.0
Msa0896680 MtrunA17_Chr4g0050701 32.877 146 79 4 30 164 29 166 8.48e-21 86.3
Msa0896680 MtrunA17_Chr4g0026141 38.095 126 64 5 43 155 37 161 1.44e-20 87.0
Msa0896680 MtrunA17_Chr8g0384351 37.879 132 61 6 36 164 33 146 1.51e-18 80.1
Msa0896680 MtrunA17_Chr8g0345731 39.216 102 53 3 42 135 55 155 2.57e-18 79.3
Msa0896680 MtrunA17_Chr8g0345711 40.404 99 53 2 42 135 43 140 3.20e-18 79.0
Msa0896680 MtrunA17_Chr8g0345721 33.594 128 50 2 42 135 66 192 5.25e-18 79.3
Msa0896680 MtrunA17_Chr7g0266701 30.319 188 103 7 42 205 36 219 1.22e-17 79.3
Msa0896680 MtrunA17_Chr8g0345701 35.398 113 51 4 42 135 38 147 2.96e-14 68.6
Msa0896680 MtrunA17_Chr3g0130321 30.986 142 70 6 43 165 39 171 1.25e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896680 AT5G13180.1 70.588 136 38 1 30 163 32 167 9.37e-70 214
Msa0896680 AT2G33480.2 69.466 131 37 2 30 159 33 161 1.92e-63 198
Msa0896680 AT2G33480.1 68.421 133 37 2 30 159 33 163 3.82e-63 198
Msa0896680 AT2G33480.3 65.094 106 32 2 57 159 3 106 7.45e-45 149
Msa0896680 AT3G15510.1 50.340 147 56 3 30 159 35 181 8.38e-41 143
Msa0896680 AT1G77450.1 49.677 155 58 5 30 168 28 178 1.66e-40 139
Msa0896680 AT3G04070.2 52.055 146 54 4 30 159 28 173 2.12e-40 141
Msa0896680 AT1G61110.1 51.034 145 52 4 30 156 34 177 1.97e-39 138
Msa0896680 AT1G69490.1 52.143 140 55 3 30 159 27 164 3.81e-39 136
Msa0896680 AT2G24430.2 49.275 138 65 2 30 162 34 171 6.16e-39 137
Msa0896680 AT2G24430.1 49.275 138 65 2 30 162 34 171 6.16e-39 137
Msa0896680 AT1G33280.1 47.015 134 63 2 30 157 26 157 3.13e-38 135
Msa0896680 AT3G04070.1 47.531 162 53 4 30 159 28 189 3.43e-38 136
Msa0896680 AT5G39610.1 41.530 183 82 4 30 189 38 218 3.54e-38 134
Msa0896680 AT5G07680.2 48.227 141 63 4 30 162 21 159 8.76e-38 134
Msa0896680 AT5G07680.1 48.227 141 63 4 30 162 35 173 1.12e-37 134
Msa0896680 AT1G65910.1 39.227 181 94 5 30 198 24 200 1.23e-37 139
Msa0896680 AT1G12260.2 47.143 140 65 4 30 162 25 162 1.57e-37 134
Msa0896680 AT5G61430.1 49.645 141 61 5 30 162 34 172 1.96e-37 134
Msa0896680 AT4G10350.1 48.175 137 60 4 30 157 27 161 2.95e-37 133
Msa0896680 AT5G17260.1 47.183 142 64 3 30 162 24 163 2.96e-37 135
Msa0896680 AT3G18400.1 48.551 138 64 4 30 162 23 158 3.03e-37 132
Msa0896680 AT1G12260.1 47.143 140 65 4 30 162 25 162 4.61e-37 134
Msa0896680 AT3G03200.1 45.775 142 66 3 30 162 24 163 9.42e-37 134
Msa0896680 AT1G62700.1 48.921 139 62 4 30 161 25 161 1.43e-36 132
Msa0896680 AT1G62700.2 48.921 139 62 4 30 161 25 161 1.43e-36 132
Msa0896680 AT1G33060.1 48.148 135 60 3 30 156 42 174 1.81e-36 135
Msa0896680 AT1G33060.2 48.148 135 60 3 30 156 42 174 1.94e-36 135
Msa0896680 AT1G76420.1 47.328 131 62 3 30 154 40 169 2.01e-36 131
Msa0896680 AT5G66300.1 48.905 137 58 5 30 157 30 163 2.21e-36 130
Msa0896680 AT1G54330.1 52.239 134 53 3 30 156 24 153 2.88e-36 129
Msa0896680 AT4G27410.2 45.890 146 71 3 30 169 32 175 3.09e-36 129
Msa0896680 AT5G53950.1 45.139 144 71 2 30 165 35 178 3.25e-36 131
Msa0896680 AT5G18270.2 47.445 137 63 3 28 156 37 172 1.76e-35 128
Msa0896680 AT3G15170.1 45.185 135 66 2 30 156 38 172 2.59e-35 127
Msa0896680 AT2G18060.3 46.479 142 66 5 30 163 27 166 3.08e-35 128
Msa0896680 AT2G18060.1 46.479 142 66 5 30 163 27 166 3.08e-35 128
Msa0896680 AT5G18270.1 47.445 137 63 3 28 156 37 172 3.08e-35 128
Msa0896680 AT5G62380.2 48.905 137 57 6 30 157 25 157 3.32e-35 128
Msa0896680 AT5G62380.1 48.905 137 57 6 30 157 25 157 3.32e-35 128
Msa0896680 AT4G35580.1 47.222 144 62 4 43 178 40 177 4.06e-35 130
Msa0896680 AT4G35580.2 47.222 144 62 4 43 178 40 177 4.22e-35 130
Msa0896680 AT4G35580.3 47.222 144 62 4 43 178 40 177 4.22e-35 130
Msa0896680 AT3G12977.1 43.030 165 82 6 30 187 37 196 5.37e-35 125
Msa0896680 AT1G01720.1 48.276 145 62 4 30 164 25 166 6.05e-35 126
Msa0896680 AT1G71930.2 44.776 134 65 3 30 156 27 158 9.65e-35 126
Msa0896680 AT1G71930.1 44.776 134 65 3 30 156 27 158 9.65e-35 126
Msa0896680 AT1G52880.1 47.973 148 61 3 30 161 35 182 1.11e-34 126
Msa0896680 AT3G04060.1 48.889 135 60 4 30 156 38 171 1.26e-34 126
Msa0896680 AT4G36160.2 41.520 171 74 6 30 191 32 185 5.05e-34 125
Msa0896680 AT1G52890.1 43.931 173 82 6 30 191 32 200 5.59e-34 124
Msa0896680 AT4G36160.1 41.520 171 74 6 30 191 28 181 5.76e-34 125
Msa0896680 AT4G36160.3 41.520 171 74 6 30 191 28 181 5.76e-34 125
Msa0896680 AT5G46590.1 40.541 148 78 3 30 168 24 170 5.80e-34 123
Msa0896680 AT3G17730.1 42.361 144 67 4 30 165 24 159 5.83e-34 122
Msa0896680 AT4G27410.3 41.104 163 71 3 30 169 32 192 1.17e-33 123
Msa0896680 AT5G08790.1 44.512 164 75 5 30 181 25 184 1.18e-33 122
Msa0896680 AT5G63790.1 47.143 140 58 4 30 157 68 203 1.50e-33 123
Msa0896680 AT5G63790.2 47.143 140 58 4 30 157 78 213 1.91e-33 123
Msa0896680 AT1G79580.3 45.926 135 64 3 30 157 35 167 2.27e-33 124
Msa0896680 AT1G79580.5 45.926 135 64 3 30 157 35 167 2.27e-33 124
Msa0896680 AT1G79580.4 45.926 135 64 3 30 157 35 167 2.27e-33 124
Msa0896680 AT1G79580.2 45.926 135 64 3 30 157 35 167 2.27e-33 124
Msa0896680 AT1G79580.1 45.926 135 64 3 30 157 35 167 2.27e-33 124
Msa0896680 AT3G10490.1 44.444 144 69 3 30 164 45 186 2.43e-33 120
Msa0896680 AT3G10480.1 45.139 144 68 3 30 164 45 186 3.68e-33 124
Msa0896680 AT3G10500.1 44.755 143 69 3 30 164 27 167 3.92e-33 125
Msa0896680 AT5G04410.1 46.154 143 67 3 30 164 27 167 6.27e-33 125
Msa0896680 AT4G28530.1 48.305 118 57 2 44 158 58 174 1.57e-32 121
Msa0896680 AT2G46770.1 38.547 179 84 5 30 184 34 210 1.60e-32 121
Msa0896680 AT1G56010.2 43.511 131 63 3 40 161 48 176 1.70e-32 120
Msa0896680 AT4G17980.1 42.336 137 69 2 30 156 24 160 1.71e-32 119
Msa0896680 AT3G15500.1 45.714 140 68 3 30 163 32 169 2.05e-32 120
Msa0896680 AT4G17980.2 42.336 137 69 2 30 156 24 160 2.84e-32 119
Msa0896680 AT3G10480.2 44.755 143 69 3 30 164 45 185 3.95e-32 121
Msa0896680 AT4G10350.2 52.525 99 42 2 62 157 18 114 4.24e-32 119
Msa0896680 AT3G10490.2 44.444 144 69 3 30 164 45 186 1.01e-31 120
Msa0896680 AT3G29035.1 45.390 141 67 3 30 162 42 180 1.78e-31 117
Msa0896680 AT1G32770.1 40.816 147 66 4 30 157 34 178 1.99e-30 115
Msa0896680 AT3G61910.1 40.268 149 65 5 30 156 29 175 2.26e-30 115
Msa0896680 AT5G61430.2 50.943 106 45 3 62 162 6 109 3.66e-30 113
Msa0896680 AT5G46590.2 42.276 123 65 2 30 147 24 145 4.81e-30 113
Msa0896680 AT2G17040.1 32.524 206 111 5 41 220 35 238 5.30e-30 112
Msa0896680 AT5G39820.1 38.854 157 69 3 30 159 38 194 6.29e-30 114
Msa0896680 AT3G49530.1 41.481 135 70 3 30 156 31 164 2.51e-29 114
Msa0896680 AT3G49530.2 41.481 135 70 3 30 156 31 164 2.56e-29 113
Msa0896680 AT3G12977.2 44.961 129 63 4 63 187 19 143 4.49e-29 109
Msa0896680 AT2G02450.1 43.478 138 71 4 30 163 69 203 4.49e-29 112
Msa0896680 AT1G32510.1 35.079 191 106 5 30 206 24 210 4.66e-29 110
Msa0896680 AT2G02450.2 43.478 138 71 4 30 163 69 203 5.97e-29 112
Msa0896680 AT5G24590.2 40.385 156 74 5 43 186 44 192 8.65e-29 112
Msa0896680 AT3G10480.3 36.723 177 68 3 30 164 45 219 1.03e-28 113
Msa0896680 AT1G26870.1 36.686 169 87 4 30 178 34 202 1.21e-28 112
Msa0896680 AT1G34190.1 43.448 145 68 5 30 164 34 174 3.29e-28 112
Msa0896680 AT3G12910.1 34.409 186 100 5 43 210 54 235 1.01e-27 107
Msa0896680 AT1G56010.1 47.059 102 46 2 66 161 10 109 1.23e-27 106
Msa0896680 AT2G43000.1 41.844 141 72 5 30 163 36 173 7.11e-27 104
Msa0896680 AT5G64060.1 39.161 143 77 3 30 164 24 164 7.90e-27 106
Msa0896680 AT5G22290.1 36.735 147 84 3 30 172 39 180 1.21e-26 105
Msa0896680 AT1G34180.3 41.667 144 72 4 30 164 34 174 1.48e-26 106
Msa0896680 AT3G44290.2 39.844 128 67 3 30 153 32 153 1.79e-26 102
Msa0896680 AT2G27300.1 40.625 128 66 3 30 153 32 153 2.62e-26 104
Msa0896680 AT1G34180.1 41.667 144 72 4 30 164 34 174 2.82e-26 106
Msa0896680 AT5G09330.5 40.411 146 75 4 30 166 24 166 1.44e-25 103
Msa0896680 AT5G09330.2 40.411 146 75 4 30 166 24 166 1.44e-25 103
Msa0896680 AT5G09330.4 40.411 146 75 4 30 166 24 166 1.44e-25 103
Msa0896680 AT5G09330.3 40.411 146 75 4 30 166 24 166 1.44e-25 103
Msa0896680 AT5G09330.1 40.411 146 75 4 30 166 24 166 1.44e-25 103
Msa0896680 AT1G34180.4 38.462 156 72 4 30 164 34 186 1.65e-25 103
Msa0896680 AT3G44290.1 39.844 128 67 3 30 153 32 153 2.25e-25 101
Msa0896680 AT1G34180.2 38.462 156 72 4 30 164 34 186 2.56e-25 103
Msa0896680 AT5G04395.1 40.323 124 57 2 30 136 46 169 1.07e-23 94.0
Msa0896680 AT4G01550.1 33.333 189 102 5 44 226 37 207 2.12e-22 95.1
Msa0896680 AT1G02230.1 42.500 120 59 5 43 156 36 151 2.93e-22 93.6
Msa0896680 AT5G64530.1 35.417 144 63 4 30 154 21 153 2.16e-20 85.5
Msa0896680 AT1G02250.1 40.833 120 61 4 43 156 36 151 4.24e-20 87.8
Msa0896680 AT5G22380.1 37.302 126 64 4 43 155 38 161 7.18e-20 85.1
Msa0896680 AT5G64530.2 40.367 109 52 3 30 136 21 118 8.23e-20 83.2
Msa0896680 AT1G32870.3 40.152 132 63 5 44 164 78 204 1.43e-19 87.4
Msa0896680 AT1G32870.2 40.152 132 63 5 44 164 42 168 1.51e-19 87.0
Msa0896680 AT1G32870.1 40.152 132 63 5 44 164 42 168 1.63e-19 87.0
Msa0896680 AT2G18060.2 51.899 79 34 4 87 163 2 78 2.98e-19 84.3
Msa0896680 AT3G10490.4 47.126 87 40 2 82 164 2 86 3.28e-19 85.1
Msa0896680 AT3G10490.3 47.126 87 40 2 82 164 2 86 3.28e-19 85.1
Msa0896680 AT4G01540.3 42.857 98 53 2 64 160 63 158 7.18e-19 84.7
Msa0896680 AT4G01540.1 42.857 98 53 2 64 160 63 158 9.18e-19 84.7
Msa0896680 AT3G44350.2 37.795 127 65 4 42 156 36 160 9.20e-19 82.4
Msa0896680 AT4G01540.4 42.857 98 53 2 64 160 63 158 9.56e-19 84.3
Msa0896680 AT4G01540.2 42.857 98 53 2 64 160 63 158 1.03e-18 84.3
Msa0896680 AT4G01520.1 41.837 98 54 2 64 160 63 158 1.59e-18 82.8
Msa0896680 AT3G04420.2 37.815 119 65 4 43 156 36 150 1.72e-17 79.7
Msa0896680 AT3G04420.1 37.815 119 65 4 43 156 36 150 1.82e-17 80.1
Msa0896680 AT3G44350.1 39.815 108 55 3 42 141 36 141 6.28e-17 75.5
Msa0896680 AT1G02220.1 38.333 120 56 5 44 155 37 146 1.32e-16 78.2
Msa0896680 AT5G14000.1 33.562 146 89 5 33 175 36 176 1.72e-16 75.5
Msa0896680 AT2G43000.2 43.617 94 46 4 74 163 5 95 2.59e-16 74.7
Msa0896680 AT5G14000.2 35.246 122 74 3 30 148 33 152 1.52e-15 71.6
Msa0896680 AT5G50820.1 34.783 115 68 3 30 142 35 144 1.71e-13 67.0
Msa0896680 AT4G28530.2 41.250 80 44 1 44 120 58 137 2.09e-13 68.6
Msa0896680 AT5G22290.2 38.824 85 47 2 88 172 2 81 1.50e-12 65.5
Msa0896680 AT1G01010.1 31.746 126 67 5 44 156 37 156 1.74e-11 63.5
Msa0896680 AT3G55210.1 38.542 96 54 3 69 163 85 176 3.97e-11 61.6

Find 55 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATTGAGAGCTCATTT+TGG 0.195965 6_1:+87299494 None:intergenic
ACGATGCTCCCATCCTCTTT+TGG 0.241605 6_1:-87299649 Msa0896680:CDS
ATAATAAAGACAATTTAAAA+AGG 0.242594 6_1:+87299564 None:intergenic
ACTCAAGAGAATCTCTTAAA+AGG 0.291846 6_1:+87299388 None:intergenic
TTGGTTCCCATTTGGATACT+TGG 0.294541 6_1:+87300187 None:intergenic
AAATTGTCTTTATTATTATT+AGG 0.313361 6_1:-87299557 Msa0896680:three_prime_UTR
GGTTGTCTTCTATGATTTCT+TGG 0.322251 6_1:-87299752 Msa0896680:CDS
GGGCTACAAACTCTGGTTAC+TGG 0.347454 6_1:-87300157 Msa0896680:CDS
CTGTTGGATTGGTTCCCATT+TGG 0.365074 6_1:+87300179 None:intergenic
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6_1:-87300448 Msa0896680:CDS
GATTCTCTTGAGTGTATGTT+TGG 0.383122 6_1:-87299378 Msa0896680:three_prime_UTR
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6_1:-87300447 Msa0896680:CDS
GAATATAAAGAATTTCCATT+TGG 0.407079 6_1:+87299415 None:intergenic
TTCATGTTCATTTGTGATTG+AGG 0.408967 6_1:+87299696 None:intergenic
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6_1:-87300101 Msa0896680:CDS
ATTCATGATCCAATCAGTTC+TGG 0.414917 6_1:+87300031 None:intergenic
CAAATGGGAACCAATCCAAC+AGG 0.433663 6_1:-87300178 Msa0896680:CDS
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6_1:-87300194 Msa0896680:CDS
GCTGAGTTGTTGCCACTGCT+TGG 0.446585 6_1:+87299796 None:intergenic
AGTTTGTAGCCCTGTTGGAT+TGG 0.451662 6_1:+87300168 None:intergenic
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6_1:-87300146 Msa0896680:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.462280 6_1:-87300141 Msa0896680:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 6_1:+87300458 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 6_1:+87300466 None:intergenic
ATGTAATCTAAGAATCCAAA+TGG 0.475185 6_1:-87299430 Msa0896680:three_prime_UTR
TCCAACAGGGCTACAAACTC+TGG 0.476642 6_1:-87300164 Msa0896680:CDS
CTCATAGTTCCAGAACTGAT+TGG 0.479030 6_1:-87300040 Msa0896680:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 6_1:-87299994 Msa0896680:intron
TTCAGCTTCAAGTTCAAAAG+TGG 0.491537 6_1:-87299773 Msa0896680:CDS
ACCAGAGTTTGTAGCCCTGT+TGG 0.493653 6_1:+87300163 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 6_1:+87299702 None:intergenic
TTCTTTACAGATAAAGGGCA+TGG 0.495811 6_1:+87300630 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 6_1:+87300480 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.511570 6_1:+87300000 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 6_1:+87299640 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.520507 6_1:+87299983 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 6_1:+87299636 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 6_1:+87300479 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 6_1:+87300473 None:intergenic
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6_1:-87300193 Msa0896680:CDS
AGAGAATCTCTTAAAAGGAA+AGG 0.547126 6_1:+87299393 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 6_1:+87299992 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.563013 6_1:+87299641 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6_1:-87300437 Msa0896680:intron
ATATTTCTGAAGAGGAGAGC+TGG 0.573188 6_1:-87299847 Msa0896680:CDS
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6_1:-87299855 Msa0896680:CDS
CAATCAGTTCTGGAACTATG+AGG 0.582807 6_1:+87300041 None:intergenic
ATGTTCATTTGTGATTGAGG+AGG 0.585375 6_1:+87299699 None:intergenic
AAAGGAGTGAAGCCAAGCAG+TGG 0.615889 6_1:-87299808 Msa0896680:CDS
TACATACCAGGTAAATCCCA+AGG 0.624010 6_1:+87300431 None:intergenic
ATGCGGGTATATTAGAATCA+CGG 0.629855 6_1:+87299271 None:intergenic
TGTTTGGTATGTCACAATCA+TGG 0.645033 6_1:-87299362 Msa0896680:three_prime_UTR
TCAGTTCTGGAACTATGAGG+TGG 0.658933 6_1:+87300044 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.664397 6_1:-87300232 Msa0896680:CDS
AAATGGGAACCAATCCAACA+GGG 0.692548 6_1:-87300177 Msa0896680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAATATGAATGAAT+TGG - chr6_1:87300088-87300107 Msa0896680:CDS 10.0%
!! ATTATTAATATGAATGAATT+GGG - chr6_1:87300089-87300108 Msa0896680:CDS 10.0%
!! ATTAATTAACAAAAAAAGAA+GGG + chr6_1:87300389-87300408 None:intergenic 10.0%
!! TATTAATTAACAAAAAAAGA+AGG + chr6_1:87300390-87300409 None:intergenic 10.0%
!! TAATAAAGACAATTTAAAAA+GGG + chr6_1:87300429-87300448 None:intergenic 10.0%
!! ATAATAAAGACAATTTAAAA+AGG + chr6_1:87300430-87300449 None:intergenic 10.0%
!! AAATTGTCTTTATTATTATT+AGG - chr6_1:87300434-87300453 Msa0896680:intron 10.0%
!! TATTATTAATATGAATGAAT+TGG - chr6_1:87300088-87300107 Msa0896680:CDS 10.0%
!! ATTATTAATATGAATGAATT+GGG - chr6_1:87300089-87300108 Msa0896680:CDS 10.0%
!! ATTAATTAACAAAAAAAGAA+GGG + chr6_1:87300389-87300408 None:intergenic 10.0%
!! TATTAATTAACAAAAAAAGA+AGG + chr6_1:87300390-87300409 None:intergenic 10.0%
!! TAATAAAGACAATTTAAAAA+GGG + chr6_1:87300429-87300448 None:intergenic 10.0%
!! ATAATAAAGACAATTTAAAA+AGG + chr6_1:87300430-87300449 None:intergenic 10.0%
!! AAATTGTCTTTATTATTATT+AGG - chr6_1:87300434-87300453 Msa0896680:intron 10.0%
!!! TATTTTTTGATAAATCATTG+TGG + chr6_1:87300659-87300678 None:intergenic 15.0%
!!! TATTTTTTGATAAATCATTG+TGG + chr6_1:87300659-87300678 None:intergenic 15.0%
!!! TCTTTTTCTTTACAGATAAA+GGG + chr6_1:87299369-87299388 None:intergenic 20.0%
!!! TTCTTTTTCTTTACAGATAA+AGG + chr6_1:87299370-87299389 None:intergenic 20.0%
!! TAAAGAAAAAGAAGATAAGA+TGG - chr6_1:87299377-87299396 Msa0896680:three_prime_UTR 20.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6_1:87300024-87300043 Msa0896680:CDS 20.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6_1:87300025-87300044 Msa0896680:CDS 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6_1:87300041-87300060 Msa0896680:CDS 20.0%
!! GAATATAAAGAATTTCCATT+TGG + chr6_1:87300579-87300598 None:intergenic 20.0%
!!! TCTTTTTCTTTACAGATAAA+GGG + chr6_1:87299369-87299388 None:intergenic 20.0%
!!! TTCTTTTTCTTTACAGATAA+AGG + chr6_1:87299370-87299389 None:intergenic 20.0%
!! TAAAGAAAAAGAAGATAAGA+TGG - chr6_1:87299377-87299396 Msa0896680:three_prime_UTR 20.0%
!! TCTTTCTTTGAATATGTATT+TGG - chr6_1:87300024-87300043 Msa0896680:CDS 20.0%
!! CTTTCTTTGAATATGTATTT+GGG - chr6_1:87300025-87300044 Msa0896680:CDS 20.0%
!!! ATTTGGGTTTTGTAATTTAA+AGG - chr6_1:87300041-87300060 Msa0896680:CDS 20.0%
!! GAATATAAAGAATTTCCATT+TGG + chr6_1:87300579-87300598 None:intergenic 20.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6_1:87299402-87299421 Msa0896680:three_prime_UTR 25.0%
! TTGTTTAATACTTAAGCGTA+AGG - chr6_1:87299478-87299497 Msa0896680:three_prime_UTR 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6_1:87299587-87299606 None:intergenic 25.0%
! ATTAACAAAAAAAGAAGGGA+GGG + chr6_1:87300385-87300404 None:intergenic 25.0%
! AATTAACAAAAAAAGAAGGG+AGG + chr6_1:87300386-87300405 None:intergenic 25.0%
! ATGTAATCTAAGAATCCAAA+TGG - chr6_1:87300561-87300580 Msa0896680:intron 25.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6_1:87299402-87299421 Msa0896680:three_prime_UTR 25.0%
! TTGTTTAATACTTAAGCGTA+AGG - chr6_1:87299478-87299497 Msa0896680:three_prime_UTR 25.0%
! ATGAACGAAAAAGAAAAGAA+AGG + chr6_1:87299587-87299606 None:intergenic 25.0%
! ATTAACAAAAAAAGAAGGGA+GGG + chr6_1:87300385-87300404 None:intergenic 25.0%
! AATTAACAAAAAAAGAAGGG+AGG + chr6_1:87300386-87300405 None:intergenic 25.0%
! ATGTAATCTAAGAATCCAAA+TGG - chr6_1:87300561-87300580 Msa0896680:intron 25.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6_1:87299680-87299699 None:intergenic 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6_1:87299748-87299767 Msa0896680:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6_1:87299920-87299939 Msa0896680:intron 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6_1:87300110-87300129 Msa0896680:CDS 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6_1:87300298-87300317 None:intergenic 30.0%
TTAACAAAAAAAGAAGGGAG+GGG + chr6_1:87300384-87300403 None:intergenic 30.0%
! TTGAATTGAGAGCTCATTTT+GGG + chr6_1:87300499-87300518 None:intergenic 30.0%
AGAGAATCTCTTAAAAGGAA+AGG + chr6_1:87300601-87300620 None:intergenic 30.0%
ACTCAAGAGAATCTCTTAAA+AGG + chr6_1:87300606-87300625 None:intergenic 30.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6_1:87299680-87299699 None:intergenic 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6_1:87299748-87299767 Msa0896680:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6_1:87299920-87299939 Msa0896680:intron 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6_1:87300110-87300129 Msa0896680:CDS 30.0%
TTCATGTTCATTTGTGATTG+AGG + chr6_1:87300298-87300317 None:intergenic 30.0%
TTAACAAAAAAAGAAGGGAG+GGG + chr6_1:87300384-87300403 None:intergenic 30.0%
! TTGAATTGAGAGCTCATTTT+GGG + chr6_1:87300499-87300518 None:intergenic 30.0%
AGAGAATCTCTTAAAAGGAA+AGG + chr6_1:87300601-87300620 None:intergenic 30.0%
ACTCAAGAGAATCTCTTAAA+AGG + chr6_1:87300606-87300625 None:intergenic 30.0%
TTCTTTACAGATAAAGGGCA+TGG + chr6_1:87299364-87299383 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6_1:87299452-87299471 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6_1:87299462-87299481 None:intergenic 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6_1:87299528-87299547 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6_1:87299575-87299594 None:intergenic 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6_1:87299740-87299759 Msa0896680:CDS 35.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6_1:87299797-87299816 Msa0896680:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6_1:87299798-87299817 Msa0896680:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6_1:87299890-87299909 Msa0896680:intron 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6_1:87299963-87299982 None:intergenic 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6_1:87300016-87300035 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6_1:87300017-87300036 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6_1:87300109-87300128 Msa0896680:CDS 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6_1:87300218-87300237 Msa0896680:CDS 35.0%
GGTTGTCTTCTATGATTTCT+TGG - chr6_1:87300239-87300258 Msa0896680:intron 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6_1:87300295-87300314 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6_1:87300353-87300372 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6_1:87300354-87300373 None:intergenic 35.0%
GGATTAAGCATTTCCAAAAG+AGG + chr6_1:87300358-87300377 None:intergenic 35.0%
TAACAAAAAAAGAAGGGAGG+GGG + chr6_1:87300383-87300402 None:intergenic 35.0%
! CTTGAATTGAGAGCTCATTT+TGG + chr6_1:87300500-87300519 None:intergenic 35.0%
GATTCTCTTGAGTGTATGTT+TGG - chr6_1:87300613-87300632 Msa0896680:intron 35.0%
TGTTTGGTATGTCACAATCA+TGG - chr6_1:87300629-87300648 Msa0896680:intron 35.0%
TTCTTTACAGATAAAGGGCA+TGG + chr6_1:87299364-87299383 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6_1:87299452-87299471 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6_1:87299462-87299481 None:intergenic 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6_1:87299528-87299547 None:intergenic 35.0%
GAAAAGAAAGGTTACATACC+AGG + chr6_1:87299575-87299594 None:intergenic 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6_1:87299740-87299759 Msa0896680:CDS 35.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6_1:87299797-87299816 Msa0896680:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6_1:87299798-87299817 Msa0896680:CDS 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6_1:87299890-87299909 Msa0896680:intron 35.0%
ATTCATGATCCAATCAGTTC+TGG + chr6_1:87299963-87299982 None:intergenic 35.0%
TTCAAAGAAAGACTGACCAA+GGG + chr6_1:87300016-87300035 None:intergenic 35.0%
ATTCAAAGAAAGACTGACCA+AGG + chr6_1:87300017-87300036 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6_1:87300109-87300128 Msa0896680:CDS 35.0%
! TTCAGCTTCAAGTTCAAAAG+TGG - chr6_1:87300218-87300237 Msa0896680:CDS 35.0%
GGTTGTCTTCTATGATTTCT+TGG - chr6_1:87300239-87300258 Msa0896680:intron 35.0%
ATGTTCATTTGTGATTGAGG+AGG + chr6_1:87300295-87300314 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6_1:87300353-87300372 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6_1:87300354-87300373 None:intergenic 35.0%
GGATTAAGCATTTCCAAAAG+AGG + chr6_1:87300358-87300377 None:intergenic 35.0%
TAACAAAAAAAGAAGGGAGG+GGG + chr6_1:87300383-87300402 None:intergenic 35.0%
! CTTGAATTGAGAGCTCATTT+TGG + chr6_1:87300500-87300519 None:intergenic 35.0%
GATTCTCTTGAGTGTATGTT+TGG - chr6_1:87300613-87300632 Msa0896680:intron 35.0%
TGTTTGGTATGTCACAATCA+TGG - chr6_1:87300629-87300648 Msa0896680:intron 35.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6_1:87299514-87299533 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6_1:87299536-87299555 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6_1:87299543-87299562 Msa0896680:three_prime_UTR 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6_1:87299544-87299563 Msa0896680:three_prime_UTR 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6_1:87299563-87299582 None:intergenic 40.0%
TGAAGCACAGACACAAACAT+CGG - chr6_1:87299624-87299643 Msa0896680:exon 40.0%
TTGTTTGCAGTAGTAGTACG+TGG + chr6_1:87299703-87299722 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6_1:87299710-87299729 Msa0896680:CDS 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6_1:87299759-87299778 Msa0896680:CDS 40.0%
TTGGTTCCCATTTGGATACT+TGG + chr6_1:87299807-87299826 None:intergenic 40.0%
AAATGGGAACCAATCCAACA+GGG - chr6_1:87299814-87299833 Msa0896680:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6_1:87299850-87299869 Msa0896680:CDS 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6_1:87299953-87299972 None:intergenic 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6_1:87299951-87299970 Msa0896680:intron 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6_1:87300015-87300034 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6_1:87300136-87300155 Msa0896680:CDS 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6_1:87300144-87300163 Msa0896680:CDS 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6_1:87300165-87300184 Msa0896680:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6_1:87300292-87300311 None:intergenic 40.0%
AACAAAAAAAGAAGGGAGGG+GGG + chr6_1:87300382-87300401 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6_1:87299514-87299533 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6_1:87299536-87299555 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6_1:87299543-87299562 Msa0896680:three_prime_UTR 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6_1:87299544-87299563 Msa0896680:three_prime_UTR 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6_1:87299563-87299582 None:intergenic 40.0%
TGAAGCACAGACACAAACAT+CGG - chr6_1:87299624-87299643 Msa0896680:exon 40.0%
TTGTTTGCAGTAGTAGTACG+TGG + chr6_1:87299703-87299722 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6_1:87299710-87299729 Msa0896680:CDS 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6_1:87299759-87299778 Msa0896680:CDS 40.0%
TTGGTTCCCATTTGGATACT+TGG + chr6_1:87299807-87299826 None:intergenic 40.0%
AAATGGGAACCAATCCAACA+GGG - chr6_1:87299814-87299833 Msa0896680:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6_1:87299850-87299869 Msa0896680:CDS 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6_1:87299953-87299972 None:intergenic 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6_1:87299951-87299970 Msa0896680:intron 40.0%
TCAAAGAAAGACTGACCAAG+GGG + chr6_1:87300015-87300034 None:intergenic 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6_1:87300136-87300155 Msa0896680:CDS 40.0%
! ATATTTCTGAAGAGGAGAGC+TGG - chr6_1:87300144-87300163 Msa0896680:CDS 40.0%
GGTGCTAAAAATGGAGTGAA+AGG - chr6_1:87300165-87300184 Msa0896680:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG + chr6_1:87300292-87300311 None:intergenic 40.0%
AACAAAAAAAGAAGGGAGGG+GGG + chr6_1:87300382-87300401 None:intergenic 40.0%
GTTGGATGAAAACGGAAACC+TGG + chr6_1:87299444-87299463 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6_1:87299515-87299534 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6_1:87299521-87299540 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6_1:87299554-87299573 Msa0896680:three_prime_UTR 45.0%
CACAAACATCGGACACAACA+TGG - chr6_1:87299635-87299654 Msa0896680:exon 45.0%
ACACTGACACATTCAGACAC+CGG - chr6_1:87299658-87299677 Msa0896680:CDS 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6_1:87299815-87299834 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6_1:87299813-87299832 Msa0896680:CDS 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6_1:87299826-87299845 None:intergenic 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6_1:87299845-87299864 Msa0896680:CDS 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6_1:87299950-87299969 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6_1:87300156-87300175 Msa0896680:CDS 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6_1:87299444-87299463 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6_1:87299515-87299534 None:intergenic 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6_1:87299521-87299540 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6_1:87299554-87299573 Msa0896680:three_prime_UTR 45.0%
CACAAACATCGGACACAACA+TGG - chr6_1:87299635-87299654 Msa0896680:exon 45.0%
ACACTGACACATTCAGACAC+CGG - chr6_1:87299658-87299677 Msa0896680:CDS 45.0%
!! CTGTTGGATTGGTTCCCATT+TGG + chr6_1:87299815-87299834 None:intergenic 45.0%
CAAATGGGAACCAATCCAAC+AGG - chr6_1:87299813-87299832 Msa0896680:CDS 45.0%
AGTTTGTAGCCCTGTTGGAT+TGG + chr6_1:87299826-87299845 None:intergenic 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6_1:87299845-87299864 Msa0896680:CDS 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6_1:87299950-87299969 None:intergenic 45.0%
! AGGAGAGCTGGTGCTAAAAA+TGG - chr6_1:87300156-87300175 Msa0896680:CDS 45.0%
GGTGAATTGAGATTGCCACC+AGG - chr6_1:87299423-87299442 Msa0896680:three_prime_UTR 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6_1:87299441-87299460 None:intergenic 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6_1:87299827-87299846 Msa0896680:CDS 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6_1:87299831-87299850 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6_1:87299834-87299853 Msa0896680:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6_1:87300011-87300030 None:intergenic 50.0%
AAAGGAGTGAAGCCAAGCAG+TGG - chr6_1:87300183-87300202 Msa0896680:CDS 50.0%
! ACGATGCTCCCATCCTCTTT+TGG - chr6_1:87300342-87300361 Msa0896680:intron 50.0%
AAAAAAAGAAGGGAGGGGGG+TGG + chr6_1:87300379-87300398 None:intergenic 50.0%
GGTGAATTGAGATTGCCACC+AGG - chr6_1:87299423-87299442 Msa0896680:three_prime_UTR 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6_1:87299441-87299460 None:intergenic 50.0%
TCCAACAGGGCTACAAACTC+TGG - chr6_1:87299827-87299846 Msa0896680:CDS 50.0%
ACCAGAGTTTGTAGCCCTGT+TGG + chr6_1:87299831-87299850 None:intergenic 50.0%
GGGCTACAAACTCTGGTTAC+TGG - chr6_1:87299834-87299853 Msa0896680:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG + chr6_1:87300011-87300030 None:intergenic 50.0%
AAAGGAGTGAAGCCAAGCAG+TGG - chr6_1:87300183-87300202 Msa0896680:CDS 50.0%
! ACGATGCTCCCATCCTCTTT+TGG - chr6_1:87300342-87300361 Msa0896680:intron 50.0%
AAAAAAAGAAGGGAGGGGGG+TGG + chr6_1:87300379-87300398 None:intergenic 50.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6_1:87299994-87300013 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6_1:87299997-87300016 Msa0896680:CDS 55.0%
GCTGAGTTGTTGCCACTGCT+TGG + chr6_1:87300198-87300217 None:intergenic 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6_1:87299994-87300013 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6_1:87299997-87300016 Msa0896680:CDS 55.0%
GCTGAGTTGTTGCCACTGCT+TGG + chr6_1:87300198-87300217 None:intergenic 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6_1:87300002-87300021 None:intergenic 60.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6_1:87300002-87300021 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 87299283 87300730 87299283 ID=Msa0896680;Name=Msa0896680
chr6_1 mRNA 87299283 87300730 87299283 ID=Msa0896680-mRNA-1;Parent=Msa0896680;Name=Msa0896680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.5|1|1|1|4|356|228
chr6_1 exon 87299283 87299893 87299283 ID=Msa0896680-mRNA-1:exon:14748;Parent=Msa0896680-mRNA-1
chr6_1 exon 87299995 87300251 87299995 ID=Msa0896680-mRNA-1:exon:14747;Parent=Msa0896680-mRNA-1
chr6_1 exon 87300438 87300519 87300438 ID=Msa0896680-mRNA-1:exon:14746;Parent=Msa0896680-mRNA-1
chr6_1 exon 87300638 87300730 87300638 ID=Msa0896680-mRNA-1:exon:14745;Parent=Msa0896680-mRNA-1
chr6_1 CDS 87300638 87300730 87300638 ID=Msa0896680-mRNA-1:cds;Parent=Msa0896680-mRNA-1
chr6_1 CDS 87300438 87300519 87300438 ID=Msa0896680-mRNA-1:cds;Parent=Msa0896680-mRNA-1
chr6_1 CDS 87299995 87300251 87299995 ID=Msa0896680-mRNA-1:cds;Parent=Msa0896680-mRNA-1
chr6_1 CDS 87299639 87299893 87299639 ID=Msa0896680-mRNA-1:cds;Parent=Msa0896680-mRNA-1
chr6_1 three_prime_UTR 87299283 87299638 87299283 ID=Msa0896680-mRNA-1:three_prime_utr;Parent=Msa0896680-mRNA-1
Gene Sequence

>Msa0896680

ATGTCGTCTTATTCTTTTTCATCTTCATCTTCATCTTCGTCTTACTATAAAAGAAGACACACTTCATTTCACTCTTCTCCATGCCCTTTATCTCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCAATCCAACAGGGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGAATGAATATCACCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGCTGGTGCTAAAAATGGAGTGAAAGGAGTGAAGCCAAGCAGTGGCAACAACTCAGCTTCAGCTTCAAGTTCAAAAGTGGTTGTCTTCTATGATTTCTTGGCAGTCAAGAAGAACAATTCTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCATTCACGATGCTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>Msa0896680

MSSYSFSSSSSSSSYYKRRHTSFHSSPCPLSRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNQSNRATNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRGKPPHSSRTDWIMNEYHLTSSHSNPLNENWVLCRIFLKRRAGAKNGVKGVKPSSGNNSASASSSKVVVFYDFLAVKKNNSDASSSSITNEHENEDSSNSFTMLPSSFGNA*