AlfalfaGEDB | Msa0897360

M. sativa cultivar zhongmu-4 / Msa0897360

KEGG: K02202
GO: GO:0000428 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016301 GO:0016310 GO:0016591 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032502 GO:0032806 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070985 GO:0071704 GO:0080090 GO:0090575 GO:0097472 GO:0140096 GO:1901564 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897360	AAK97227.1	100.000	412	0	0	1	412	1	412	0.0	847

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897360	sp\|P29620\|CDKD1_ORYSJ	74.939	407	96	4	8	410	13	417	0.0	617

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897360	Q947K6	100.000	412	0	0	1	412	1	412	0.0	847

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897360	MtrunA17_Chr6g0483151	98.786	412	5	0	1	412	1	412	0.0	838
Msa0897360	MtrunA17_Chr3g0099951	75.362	414	96	2	1	412	1	410	0.0	639
Msa0897360	MtrunA17_Chr2g0293491	47.552	286	147	3	12	294	2	287	1.64e-85	262
Msa0897360	MtrunA17_Chr4g0051261	48.252	286	145	3	12	294	2	287	6.22e-85	261
Msa0897360	MtrunA17_Chr3g0093571	41.945	329	168	4	9	316	20	346	1.63e-76	246
Msa0897360	MtrunA17_Chr3g0093391	41.945	329	168	4	9	316	18	344	4.28e-76	245
Msa0897360	MtrunA17_Chr4g0002001	41.722	302	157	4	12	294	2	303	5.71e-72	228
Msa0897360	MtrunA17_Chr1g0187371	42.034	295	157	5	12	294	16	308	4.31e-71	226
Msa0897360	MtrunA17_Chr4g0057791	38.983	295	165	4	20	300	224	517	6.55e-71	232
Msa0897360	MtrunA17_Chr8g0377071	38.907	311	177	4	9	307	380	689	8.44e-69	231

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0897360	AT1G73690.1	74.510	408	93	4	4	411	1	397	0.0	617
Msa0897360	AT1G18040.1	75.309	405	81	4	8	412	6	391	0.0	611
Msa0897360	AT1G66750.1	75.976	333	76	2	11	339	10	342	0.0	534
Msa0897360	AT3G48750.1	48.780	287	142	4	12	294	2	287	1.46e-85	263
Msa0897360	AT1G76540.1	43.607	305	154	8	12	302	12	312	2.95e-78	244
Msa0897360	AT1G67580.1	40.132	304	169	4	9	300	401	703	2.94e-76	251
Msa0897360	AT1G67580.2	40.132	304	169	4	9	300	401	703	2.94e-76	251
Msa0897360	AT1G20930.1	42.434	304	159	7	4	294	6	306	2.94e-74	234
Msa0897360	AT5G10270.1	41.875	320	163	4	9	307	21	338	4.18e-74	240
Msa0897360	AT2G38620.2	40.397	302	161	3	12	294	2	303	1.44e-73	233

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Find 150 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTACCTGAGTATCAA+TGG	0.460809	6_1:+89290950	None:intergenic
AAAATTGAGGATTTGAGAGT+GGG	0.544013	6_1:+89291213	None:intergenic
AAACCAAATAATTTGTTGAT+TGG	0.315830	6_1:-89289504	Msa0897360:CDS
AAACGTGAGGTGCTTGGTGA+AGG	0.571052	6_1:-89290996	Msa0897360:CDS
AAAGACCGCAGAGGAGGGGC+TGG	0.502276	6_1:+89286970	None:intergenic
AAAGAGAAATGGAGCGTAAG+AGG	0.439023	6_1:+89291321	None:intergenic
AAAGCATCATCAGTTGCCAT+TGG	0.541499	6_1:+89286943	None:intergenic
AAATAAAGACCGCAGAGGAG+GGG	0.596726	6_1:+89286966	None:intergenic
AAATCTAGCGACATTGGTGC+AGG	0.533158	6_1:+89286510	None:intergenic
AAATTGAGGATTTGAGAGTG+GGG	0.634007	6_1:+89291214	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGAGGATTTGAGAGT+GGG	+	chr6_1:89285336-89285355	None:intergenic	30.0%
GAAATTCAGATGGAAAATTG+AGG	+	chr6_1:89285349-89285368	None:intergenic	30.0%
TTTGAAGAAATTAGGGTTTC+GGG	+	chr6_1:89285400-89285419	None:intergenic	30.0%
ATCGGCAATTTATGAGAAAT+TGG	+	chr6_1:89285427-89285446	None:intergenic	30.0%
AAAATCTACCTGAGTATCAA+TGG	+	chr6_1:89285599-89285618	None:intergenic	30.0%
GTGTTATAGATAGATCATGA+AGG	-	chr6_1:89285778-89285797	Msa0897360:three_prime_UTR	30.0%
GGAAATTTCAGTGAAAAAGT+AGG	-	chr6_1:89285799-89285818	Msa0897360:exon	30.0%
AATGAAAGTTGGAAGTTGTA+AGG	-	chr6_1:89285871-89285890	Msa0897360:intron	30.0%
ATGAAAGTTGGAAGTTGTAA+GGG	-	chr6_1:89285872-89285891	Msa0897360:intron	30.0%
AGAGTATGAGTGAAATTATG+AGG	-	chr6_1:89285917-89285936	Msa0897360:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	89285184	89291384	89285184	ID=Msa0897360;Name=Msa0897360
chr6_1	mRNA	89285184	89291384	89285184	ID=Msa0897360-mRNA-1;Parent=Msa0897360;Name=Msa0897360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=301\|1\|1\|1\|0.85\|0.75\|8\|622\|412
chr6_1	exon	89285184	89285854	89285184	ID=Msa0897360-mRNA-1:exon:15117;Parent=Msa0897360-mRNA-1
chr6_1	exon	89286465	89286779	89286465	ID=Msa0897360-mRNA-1:exon:15116;Parent=Msa0897360-mRNA-1
chr6_1	exon	89286871	89287106	89286871	ID=Msa0897360-mRNA-1:exon:15115;Parent=Msa0897360-mRNA-1
chr6_1	exon	89287627	89287752	89287627	ID=Msa0897360-mRNA-1:exon:15114;Parent=Msa0897360-mRNA-1
chr6_1	exon	89289425	89289533	89289425	ID=Msa0897360-mRNA-1:exon:15113;Parent=Msa0897360-mRNA-1
chr6_1	exon	89289611	89289909	89289611	ID=Msa0897360-mRNA-1:exon:15112;Parent=Msa0897360-mRNA-1
chr6_1	exon	89290959	89291282	89290959	ID=Msa0897360-mRNA-1:exon:15111;Parent=Msa0897360-mRNA-1
chr6_1	exon	89291303	89291384	89291303	ID=Msa0897360-mRNA-1:exon:15110;Parent=Msa0897360-mRNA-1
chr6_1	five_prime_UTR	89291303	89291384	89291303	ID=Msa0897360-mRNA-1:five_prime_utr;Parent=Msa0897360-mRNA-1
chr6_1	five_prime_UTR	89291064	89291282	89291064	ID=Msa0897360-mRNA-1:five_prime_utr;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89290959	89291063	89290959	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89289611	89289909	89289611	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89289425	89289533	89289425	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89287627	89287752	89287627	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89286871	89287106	89286871	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89286465	89286779	89286465	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	CDS	89285806	89285854	89285806	ID=Msa0897360-mRNA-1:cds;Parent=Msa0897360-mRNA-1
chr6_1	three_prime_UTR	89285184	89285805	89285184	ID=Msa0897360-mRNA-1:three_prime_utr;Parent=Msa0897360-mRNA-1

Gene Sequence

>Msa0897360

ATGACAGAATTAGATCCGTCTAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTGCTTGGTGAAGGTACCTATGGTGTTGTTTACAAAGCCATTGATACTCAGACGGGGCAGACGGTTGCTATTAAGAAGATTCGGATTGGCAAGCAGAAAGAAGGGGTGAATTTTACTGCTCTTAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCCAATATAATTGAGTTGATTGATTGCTTCCCACATAAAGGGAATTTGCATCTTGTTTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGACCGAAATATTTTCCTTGCACCGGGTGATATAAAATCTTACCTTCAAATGACGCTAAAAGGTCTTGCTCATTGTCACAAAAAATGGATATTGCATAGGGATATGAAACCAAATAATTTGTTGATTGGACCTAATGGACAACTGAAACTTGCAGATTTTGGTTTAGCACGTATTTTTGGAAGCCCGGATCGCAGGTTCACTCATCAGGTATTTGCGCGGTGGTATAGAGCACCTGAGCTATTATTCGGCACCAAGCAGTATGGCCCAGGAGTAGATGTTTGGGCTGCAGCCTGCATATTTGCTGAGCTTCTTCTTCGTCGACCCTTTTTGCAGGGATCAAGTGACATTGACCAATTAGGAAAGATCTTTGCTGCATTTGGAACTCCATCTCCTTCTCAGTGGCCTGATATGGTATACCTTCCAGATTATGTTGAGTATCAATTTGTGCCAGCCCCTCCTCTGCGGTCTTTATTTCCAATGGCAACTGATGATGCTTTAGACTTGTTGTCTAAAATGTTCACGTATGACCCCAAAGATAGAATTTCAGTGCAACAGGCATTAGAGCACAGATACTTCACTTGTCCTCCTCAACCAACAGATCCAGTTAAGCTTCCAAGACCTGCCCCTAAGAAGGAAATTAAGCCATCAGATTTGAATCCTCCAGAGGGCCCCACTGTCTTATCACCTCCGAGAAAGACTAGGAGAGTAATGCCAGGACGTGATGGACTTGAAGGCAATTCTTTGCAAGGAGATAGGGTTGACGATAATCATGGTAACCTCAAACAGACAGGTGGTGATAATACAGGGAAGAATGAGCCTGCACCAATGTCGCTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGCGCTGACAGATCACATTTAAAAAGGAAATTAGATCTAGAGTTCCAGTAA

Protein sequence

>Msa0897360

MTELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELKDPNIIELIDCFPHKGNLHLVFEFMETDLEAVIRDRNIFLAPGDIKSYLQMTLKGLAHCHKKWILHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQFVPAPPLRSLFPMATDDALDLLSKMFTYDPKDRISVQQALEHRYFTCPPQPTDPVKLPRPAPKKEIKPSDLNPPEGPTVLSPPRKTRRVMPGRDGLEGNSLQGDRVDDNHGNLKQTGGDNTGKNEPAPMSLDFSVFGLKPPNRPTINSADRSHLKRKLDLEFQ*