Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897620 | AES76575.1 | 76.774 | 155 | 12 | 2 | 3 | 157 | 19 | 149 | 5.10e-64 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897620 | G7KM54 | 76.774 | 155 | 12 | 2 | 3 | 157 | 19 | 149 | 2.44e-64 | 205 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0897620 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897620 | MtrunA17_Chr4g0052061 | 55.285 | 123 | 35 | 2 | 65 | 167 | 28 | 150 | 2.84e-33 | 116 |
| Msa0897620 | MtrunA17_Chr4g0052081 | 48.718 | 117 | 34 | 4 | 67 | 157 | 30 | 146 | 2.76e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATCGAAATTCGATATATT+TGG | 0.161085 | 6_1:-89973048 | None:intergenic |
| CCTTGCTGATCTTGATTTAG+AGG | 0.189952 | 6_1:+89974032 | Msa0897620:CDS |
| AAATTATTCTTCGTGAAATA+TGG | 0.209960 | 6_1:+89973001 | Msa0897620:CDS |
| CTTGACCCTCTTGATTATAT+AGG | 0.297565 | 6_1:-89974137 | None:intergenic |
| GAAGAATAATTTGATATATA+AGG | 0.368943 | 6_1:-89972990 | None:intergenic |
| CGAATTGATTCGCATGTCCT+TGG | 0.374531 | 6_1:+89973069 | Msa0897620:CDS |
| TCTCATTGGTTCGGATTGTA+AGG | 0.394212 | 6_1:+89974178 | Msa0897620:CDS |
| TGGTACTTCGTTGATTTGAT+TGG | 0.400734 | 6_1:-89973028 | None:intergenic |
| ATCACCTTCTGCAGCACATA+AGG | 0.415600 | 6_1:-89973153 | None:intergenic |
| ATCAAATAGGTTACCGGCAG+AGG | 0.427874 | 6_1:-89973858 | None:intergenic |
| TTGCAGCATACAAGTCTCAT+TGG | 0.446238 | 6_1:+89974164 | Msa0897620:CDS |
| GGTGCTAGAATTAGTATTGT+TGG | 0.455289 | 6_1:+89973830 | Msa0897620:CDS |
| ATTATATAGGTTTCTTTGAA+AGG | 0.460178 | 6_1:-89974124 | None:intergenic |
| GCATACAAGTCTCATTGGTT+CGG | 0.464178 | 6_1:+89974169 | Msa0897620:CDS |
| CGGGATTTGTTTGATTGTCA+TGG | 0.487057 | 6_1:+89973093 | Msa0897620:CDS |
| TTATAACCAACGAGTGATGA+TGG | 0.494238 | 6_1:+89972964 | Msa0897620:intron |
| ATTGTTGGATTCACCTCTGC+CGG | 0.504066 | 6_1:+89973845 | Msa0897620:CDS |
| CAATAGAATTAGGCATGAAA+AGG | 0.504674 | 6_1:+89970925 | None:intergenic |
| AAGAAACCTATATAATCAAG+AGG | 0.508847 | 6_1:+89974131 | Msa0897620:CDS |
| GGTGATAGAGCTACTACATC+GGG | 0.522259 | 6_1:+89973114 | Msa0897620:CDS |
| AGAGGAACTTCTAAAAGTGA+AGG | 0.528038 | 6_1:+89974050 | Msa0897620:CDS |
| TTGATTCGCATGTCCTTGGA+CGG | 0.541106 | 6_1:+89973073 | Msa0897620:CDS |
| ATTCACATTGTCCTTCATGA+AGG | 0.552772 | 6_1:-89973918 | None:intergenic |
| TGATTCGCATGTCCTTGGAC+GGG | 0.560782 | 6_1:+89973074 | Msa0897620:CDS |
| CTCTAAATCAAGATCAGCAA+GGG | 0.577150 | 6_1:-89974031 | None:intergenic |
| AAACATCAACATGCTCAAGA+AGG | 0.584063 | 6_1:+89973975 | Msa0897620:CDS |
| ACCTCCTTATGTGCTGCAGA+AGG | 0.585928 | 6_1:+89973149 | Msa0897620:CDS |
| AGTGAATTATCAGTTCTTTG+CGG | 0.592278 | 6_1:+89973809 | Msa0897620:CDS |
| AATCAAACAAATCCCGTCCA+AGG | 0.598244 | 6_1:-89973086 | None:intergenic |
| CATCAACATGCTCAAGAAGG+TGG | 0.605156 | 6_1:+89973978 | Msa0897620:CDS |
| TGGTGATAGAGCTACTACAT+CGG | 0.610079 | 6_1:+89973113 | Msa0897620:CDS |
| CAACATGCTCAAGAAGGTGG+AGG | 0.612438 | 6_1:+89973981 | Msa0897620:CDS |
| ACCTTCTGCAGCACATAAGG+AGG | 0.613637 | 6_1:-89973150 | None:intergenic |
| GCTTCATTGAAAGTGCTCCA+TGG | 0.617747 | 6_1:+89974072 | Msa0897620:CDS |
| CCTCTAAATCAAGATCAGCA+AGG | 0.626143 | 6_1:-89974032 | None:intergenic |
| ACTAAGGAGTACCTTCATGA+AGG | 0.633770 | 6_1:+89973907 | Msa0897620:CDS |
| AGAAACCTATATAATCAAGA+GGG | 0.637657 | 6_1:+89974132 | Msa0897620:CDS |
| GATAGAGCTACTACATCGGG+AGG | 0.682760 | 6_1:+89973117 | Msa0897620:CDS |
| TTGTTGCTTCAATGTCACCA+TGG | 0.716797 | 6_1:-89974089 | None:intergenic |
| AAGGTGGAGGAAGTTGACAA+AGG | 0.721445 | 6_1:+89973994 | Msa0897620:CDS |
| AAGGACAATGTGAATCATCG+AGG | 0.753335 | 6_1:+89973926 | Msa0897620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTAAGAGTATAAT+TGG | - | chr6_1:89971178-89971197 | None:intergenic | 10.0% |
| !! | ATATATATATATATATGAGA+GGG | - | chr6_1:89971482-89971501 | None:intergenic | 10.0% |
| !! | TATATATATATATATATGAG+AGG | - | chr6_1:89971483-89971502 | None:intergenic | 10.0% |
| !! | CATAATATATATTAATGAAA+AGG | - | chr6_1:89971679-89971698 | None:intergenic | 10.0% |
| !!! | GACAATTTAATTTTTTTTAT+CGG | + | chr6_1:89972260-89972279 | Msa0897620:intron | 10.0% |
| !! | ATAATAAACTTTGTAAAAAA+AGG | + | chr6_1:89972387-89972406 | Msa0897620:intron | 10.0% |
| !! | TTTGTTCAATATTCTAAATT+CGG | + | chr6_1:89971028-89971047 | Msa0897620:intron | 15.0% |
| !! | TGTTTGAACATAATTATTAA+TGG | - | chr6_1:89971352-89971371 | None:intergenic | 15.0% |
| !! | GAAAATCAAAATAAGTAATT+AGG | - | chr6_1:89971441-89971460 | None:intergenic | 15.0% |
| !! | ATATTGAAAAATTTACTCAT+AGG | + | chr6_1:89972209-89972228 | Msa0897620:intron | 15.0% |
| !! | TGATGTTAAAGAATTTATTA+AGG | + | chr6_1:89972237-89972256 | Msa0897620:intron | 15.0% |
| !! | GATGTTAAAGAATTTATTAA+GGG | + | chr6_1:89972238-89972257 | Msa0897620:intron | 15.0% |
| !!! | TTTTCCATATATTATTTCTA+TGG | - | chr6_1:89972908-89972927 | None:intergenic | 15.0% |
| !! | GAAGAATAATTTGATATATA+AGG | - | chr6_1:89972993-89973012 | None:intergenic | 15.0% |
| !!! | AAAGTTTTTTGTTTTAATTC+AGG | - | chr6_1:89973571-89973590 | None:intergenic | 15.0% |
| !! | ACATAATTATTAATGGTGTT+CGG | - | chr6_1:89971345-89971364 | None:intergenic | 20.0% |
| !!! | TTACTTATTTTGATTTTCTG+AGG | + | chr6_1:89971443-89971462 | Msa0897620:intron | 20.0% |
| !!! | TACTTATTTTGATTTTCTGA+GGG | + | chr6_1:89971444-89971463 | Msa0897620:intron | 20.0% |
| !! | TAATATATATTATGAGTGAG+TGG | + | chr6_1:89971685-89971704 | Msa0897620:intron | 20.0% |
| !! | GAAAAATGCATAATATCTTA+AGG | - | chr6_1:89972016-89972035 | None:intergenic | 20.0% |
| !!! | TATGTTTGGTTTATATATTG+AGG | + | chr6_1:89972116-89972135 | Msa0897620:intron | 20.0% |
| !! | TCTAAATTGAAACAATTACT+TGG | + | chr6_1:89972162-89972181 | Msa0897620:intron | 20.0% |
| !!! | TGTAGTATTTTTACGAAAAA+TGG | + | chr6_1:89972417-89972436 | Msa0897620:intron | 20.0% |
| !!! | TACAATTCTAAGATTTCTTA+TGG | - | chr6_1:89972854-89972873 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTAATCTTGACA+CGG | - | chr6_1:89972937-89972956 | None:intergenic | 20.0% |
| !! | AAATTATTCTTCGTGAAATA+TGG | + | chr6_1:89973001-89973020 | Msa0897620:CDS | 20.0% |
| !! | TTCATTGATAAGTTTAAAGA+TGG | + | chr6_1:89973222-89973241 | Msa0897620:intron | 20.0% |
| !! | AAACTACATATTTAATCACA+AGG | - | chr6_1:89973383-89973402 | None:intergenic | 20.0% |
| !!! | GAGTCTTTTTTTCTATTATT+TGG | - | chr6_1:89973413-89973432 | None:intergenic | 20.0% |
| !!! | AAACAAAAAACTTTTTCACA+AGG | + | chr6_1:89973577-89973596 | Msa0897620:intron | 20.0% |
| !! | CAAATAAAAGAACAAACAAT+AGG | - | chr6_1:89973640-89973659 | None:intergenic | 20.0% |
| !!! | GTTTGTTCTTTTATTTGAAA+TGG | + | chr6_1:89973643-89973662 | Msa0897620:intron | 20.0% |
| !! | ATTATATAGGTTTCTTTGAA+AGG | - | chr6_1:89974127-89974146 | None:intergenic | 20.0% |
| ! | AATATTCTAAATTCGGCAAT+AGG | + | chr6_1:89971035-89971054 | Msa0897620:intron | 25.0% |
| !! | GTAAAAGGAATACATGATTT+TGG | + | chr6_1:89971137-89971156 | Msa0897620:intron | 25.0% |
| ! | ATTATGTTCAAACAACAGTT+TGG | + | chr6_1:89971358-89971377 | Msa0897620:intron | 25.0% |
| ! | GTAACATACACAAGAAAAAA+GGG | - | chr6_1:89971554-89971573 | None:intergenic | 25.0% |
| ! | TGTAACATACACAAGAAAAA+AGG | - | chr6_1:89971555-89971574 | None:intergenic | 25.0% |
| ! | AGATAAATATGAGATAGAAG+AGG | - | chr6_1:89971913-89971932 | None:intergenic | 25.0% |
| ! | TTTAGATGAAGGGAAAATAT+AGG | - | chr6_1:89971948-89971967 | None:intergenic | 25.0% |
| ! | GCAATGAAAAAAAAAAGTTG+GGG | - | chr6_1:89971975-89971994 | None:intergenic | 25.0% |
| ! | GGCAATGAAAAAAAAAAGTT+GGG | - | chr6_1:89971976-89971995 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTTTTCATTGC+CGG | + | chr6_1:89971975-89971994 | Msa0897620:intron | 25.0% |
| !!! | AACTTTTTTTTTTCATTGCC+GGG | + | chr6_1:89971976-89971995 | Msa0897620:intron | 25.0% |
| !! | ACCATTGTAAAATTAAGTTG+GGG | - | chr6_1:89972073-89972092 | None:intergenic | 25.0% |
| ! | GACCATTGTAAAATTAAGTT+GGG | - | chr6_1:89972074-89972093 | None:intergenic | 25.0% |
| !! | CAACTTAATTTTACAATGGT+CGG | + | chr6_1:89972073-89972092 | Msa0897620:intron | 25.0% |
| !!! | TATTTTTACGAAAAATGGAG+AGG | + | chr6_1:89972422-89972441 | Msa0897620:intron | 25.0% |
| !!! | TTTTTCTAAAAGAGCTTTGA+TGG | - | chr6_1:89972542-89972561 | None:intergenic | 25.0% |
| ! | AAACTTACCTGTAAAACAAT+GGG | - | chr6_1:89972782-89972801 | None:intergenic | 25.0% |
| ! | AAAACTTACCTGTAAAACAA+TGG | - | chr6_1:89972783-89972802 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTTTAGCCTTTCA+TGG | + | chr6_1:89972797-89972816 | Msa0897620:intron | 25.0% |
| !!! | CCATATATTATTTCTATGGT+AGG | - | chr6_1:89972904-89972923 | None:intergenic | 25.0% |
| ! | CCTACCATAGAAATAATATA+TGG | + | chr6_1:89972901-89972920 | Msa0897620:intron | 25.0% |
| ! | CAAAAACATTAGACACATTA+TGG | - | chr6_1:89973197-89973216 | None:intergenic | 25.0% |
| !!! | TGATGTATTTTTGTTGTTTC+TGG | - | chr6_1:89973462-89973481 | None:intergenic | 25.0% |
| !! | TTTTATTCACCTGAAAACTA+AGG | - | chr6_1:89973612-89973631 | None:intergenic | 25.0% |
| !!! | AGTTTTCAGGTGAATAAAAT+TGG | + | chr6_1:89973613-89973632 | Msa0897620:intron | 25.0% |
| !!! | GTTCTTTTATTTGAAATGGA+TGG | + | chr6_1:89973647-89973666 | Msa0897620:intron | 25.0% |
| ! | ATATGATTCTATGATATTGC+AGG | + | chr6_1:89973693-89973712 | Msa0897620:intron | 25.0% |
| ! | TTGAAGAGACAAAATCAAAT+AGG | - | chr6_1:89973874-89973893 | None:intergenic | 25.0% |
| ! | AAGAAACCTATATAATCAAG+AGG | + | chr6_1:89974131-89974150 | Msa0897620:CDS | 25.0% |
| ! | AGAAACCTATATAATCAAGA+GGG | + | chr6_1:89974132-89974151 | Msa0897620:CDS | 25.0% |
| TTTCAATAAAGACGTAGGTT+CGG | - | chr6_1:89971093-89971112 | None:intergenic | 30.0% | |
| ACTTCTTTCAATAAAGACGT+AGG | - | chr6_1:89971098-89971117 | None:intergenic | 30.0% | |
| ! | GCAAACATTTTACGTGTAAA+AGG | + | chr6_1:89971122-89971141 | Msa0897620:intron | 30.0% |
| AATTATTAATGGTGTTCGGT+CGG | - | chr6_1:89971341-89971360 | None:intergenic | 30.0% | |
| TTAAACAAAGATTCCCTAAG+AGG | - | chr6_1:89971402-89971421 | None:intergenic | 30.0% | |
| ! | TCTTAGGGAATCTTTGTTTA+AGG | + | chr6_1:89971401-89971420 | Msa0897620:intron | 30.0% |
| !! | TCTTTGTTTAAGGACCTTTT+TGG | + | chr6_1:89971411-89971430 | Msa0897620:intron | 30.0% |
| AGTAATTAGGTAGACCAAAA+AGG | - | chr6_1:89971428-89971447 | None:intergenic | 30.0% | |
| !!! | TTTTGATTTTCTGAGGGTTT+TGG | + | chr6_1:89971450-89971469 | Msa0897620:intron | 30.0% |
| ! | AAATTTTAGACATCCCAACT+AGG | - | chr6_1:89971740-89971759 | None:intergenic | 30.0% |
| CGGCAATGAAAAAAAAAAGT+TGG | - | chr6_1:89971977-89971996 | None:intergenic | 30.0% | |
| !!! | ACTTTTTTTTTTCATTGCCG+GGG | + | chr6_1:89971977-89971996 | Msa0897620:intron | 30.0% |
| ATGCATAATATCTTAAGGTC+CGG | - | chr6_1:89972011-89972030 | None:intergenic | 30.0% | |
| ! | TCCCCAACTTAATTTTACAA+TGG | + | chr6_1:89972069-89972088 | Msa0897620:intron | 30.0% |
| CGACCATTGTAAAATTAAGT+TGG | - | chr6_1:89972075-89972094 | None:intergenic | 30.0% | |
| CCTTAAAAAGAGTTCAATGT+GGG | - | chr6_1:89972449-89972468 | None:intergenic | 30.0% | |
| TCCTTAAAAAGAGTTCAATG+TGG | - | chr6_1:89972450-89972469 | None:intergenic | 30.0% | |
| ! | GTTTTATGAAACTATGGTTG+GGG | - | chr6_1:89972496-89972515 | None:intergenic | 30.0% |
| !! | GGTTTTATGAAACTATGGTT+GGG | - | chr6_1:89972497-89972516 | None:intergenic | 30.0% |
| !! | AGGTTTTATGAAACTATGGT+TGG | - | chr6_1:89972498-89972517 | None:intergenic | 30.0% |
| !! | AAGGAGGTTTTATGAAACTA+TGG | - | chr6_1:89972502-89972521 | None:intergenic | 30.0% |
| TAATATATGAAGCACAACCA+AGG | - | chr6_1:89972624-89972643 | None:intergenic | 30.0% | |
| TTGGTTGTGCTTCATATATT+AGG | + | chr6_1:89972623-89972642 | Msa0897620:intron | 30.0% | |
| !! | TTTTTAGCCCATTGTTTTAC+AGG | + | chr6_1:89972772-89972791 | Msa0897620:intron | 30.0% |
| CATGTTAAAATGACCATGAA+AGG | - | chr6_1:89972813-89972832 | None:intergenic | 30.0% | |
| CGATCGAAATTCGATATATT+TGG | - | chr6_1:89973051-89973070 | None:intergenic | 30.0% | |
| ACACATTATGGTAGCAATAA+AGG | - | chr6_1:89973185-89973204 | None:intergenic | 30.0% | |
| TATTGCATCATCATTGCTAA+TGG | - | chr6_1:89973311-89973330 | None:intergenic | 30.0% | |
| ! | TTTATTTGAAATGGATGGCT+AGG | + | chr6_1:89973652-89973671 | Msa0897620:intron | 30.0% |
| ! | TTATTTGAAATGGATGGCTA+GGG | + | chr6_1:89973653-89973672 | Msa0897620:intron | 30.0% |
| AATAAACTTATCGTCCTTAG+CGG | - | chr6_1:89973750-89973769 | None:intergenic | 30.0% | |
| ATTCACTTGCTTTCTTAACA+AGG | - | chr6_1:89973796-89973815 | None:intergenic | 30.0% | |
| AGTGAATTATCAGTTCTTTG+CGG | + | chr6_1:89973809-89973828 | Msa0897620:CDS | 30.0% | |
| GACAAAATCAAATAGGTTAC+CGG | - | chr6_1:89973867-89973886 | None:intergenic | 30.0% | |
| !!! | TTGATGTTTTGATTTCGAGA+AGG | - | chr6_1:89973964-89973983 | None:intergenic | 30.0% |
| ATTCTAAATTCGGCAATAGG+AGG | + | chr6_1:89971038-89971057 | Msa0897620:intron | 35.0% | |
| TTCAATAAAGACGTAGGTTC+GGG | - | chr6_1:89971092-89971111 | None:intergenic | 35.0% | |
| ATTATTAATGGTGTTCGGTC+GGG | - | chr6_1:89971340-89971359 | None:intergenic | 35.0% | |
| ATGTTCAAACAACAGTTTGG+TGG | + | chr6_1:89971361-89971380 | Msa0897620:intron | 35.0% | |
| TGTTCAAACAACAGTTTGGT+GGG | + | chr6_1:89971362-89971381 | Msa0897620:intron | 35.0% | |
| AAAGATTCCCTAAGAGGAAT+GGG | - | chr6_1:89971396-89971415 | None:intergenic | 35.0% | |
| TTTATCCAAAAAGAGAGCCA+TGG | + | chr6_1:89971784-89971803 | Msa0897620:intron | 35.0% | |
| TTGGGGAATGTTTAGATGAA+GGG | - | chr6_1:89971958-89971977 | None:intergenic | 35.0% | |
| TGCATAATATCTTAAGGTCC+GGG | - | chr6_1:89972010-89972029 | None:intergenic | 35.0% | |
| ! | TGCATTTTTCTTACCAACTG+AGG | + | chr6_1:89972026-89972045 | Msa0897620:intron | 35.0% |
| GGATCACATTTGAGTGTTAA+TGG | - | chr6_1:89972311-89972330 | None:intergenic | 35.0% | |
| ACTCAAATGTGATCCATAGT+CGG | + | chr6_1:89972316-89972335 | Msa0897620:intron | 35.0% | |
| ! | CCCACATTGAACTCTTTTTA+AGG | + | chr6_1:89972446-89972465 | Msa0897620:intron | 35.0% |
| ! | TCGATGATTTAACTCTAAGG+AGG | - | chr6_1:89972518-89972537 | None:intergenic | 35.0% |
| TTTGTTCGAGATCAAAACCT+TGG | + | chr6_1:89972604-89972623 | Msa0897620:intron | 35.0% | |
| !! | AGTTAAGATCCACCACTTTT+AGG | + | chr6_1:89972698-89972717 | Msa0897620:intron | 35.0% |
| TCTTCAAAACCTAAAAGTGG+TGG | - | chr6_1:89972710-89972729 | None:intergenic | 35.0% | |
| TGGTCTTCAAAACCTAAAAG+TGG | - | chr6_1:89972713-89972732 | None:intergenic | 35.0% | |
| ! | ACCAGATTTTAAACGCTTCT+TGG | + | chr6_1:89972729-89972748 | Msa0897620:intron | 35.0% |
| !! | TCCAAGAAGCGTTTAAAATC+TGG | - | chr6_1:89972733-89972752 | None:intergenic | 35.0% |
| TTATAACCAACGAGTGATGA+TGG | + | chr6_1:89972964-89972983 | Msa0897620:intron | 35.0% | |
| !! | TGGTACTTCGTTGATTTGAT+TGG | - | chr6_1:89973031-89973050 | None:intergenic | 35.0% |
| GATTAATTGTGATCGATGCA+AGG | - | chr6_1:89973503-89973522 | None:intergenic | 35.0% | |
| !!! | AACTTTTTCACAAGGTAAGC+AGG | + | chr6_1:89973585-89973604 | Msa0897620:intron | 35.0% |
| TATTGCAGGAATTGATTGCA+AGG | + | chr6_1:89973707-89973726 | Msa0897620:intron | 35.0% | |
| ATTGCAGGAATTGATTGCAA+GGG | + | chr6_1:89973708-89973727 | Msa0897620:intron | 35.0% | |
| GGTGCTAGAATTAGTATTGT+TGG | + | chr6_1:89973830-89973849 | Msa0897620:CDS | 35.0% | |
| !!! | CAACTTTTAAGTTGCGACTA+AGG | + | chr6_1:89973891-89973910 | Msa0897620:intron | 35.0% |
| ATTCACATTGTCCTTCATGA+AGG | - | chr6_1:89973921-89973940 | None:intergenic | 35.0% | |
| AAACATCAACATGCTCAAGA+AGG | + | chr6_1:89973975-89973994 | Msa0897620:CDS | 35.0% | |
| CTCTAAATCAAGATCAGCAA+GGG | - | chr6_1:89974034-89974053 | None:intergenic | 35.0% | |
| ! | AGAGGAACTTCTAAAAGTGA+AGG | + | chr6_1:89974050-89974069 | Msa0897620:CDS | 35.0% |
| CTTGACCCTCTTGATTATAT+AGG | - | chr6_1:89974140-89974159 | None:intergenic | 35.0% | |
| AGGTTTCTCTGTCAAAGAAG+AGG | - | chr6_1:89970984-89971003 | None:intergenic | 40.0% | |
| GAACAAAACTTGCACAATCC+CGG | - | chr6_1:89971015-89971034 | None:intergenic | 40.0% | |
| TAAATTCGGCAATAGGAGGA+GGG | + | chr6_1:89971042-89971061 | Msa0897620:intron | 40.0% | |
| TCAATAAAGACGTAGGTTCG+GGG | - | chr6_1:89971091-89971110 | None:intergenic | 40.0% | |
| ACTCTATTCCCATTCCTCTT+AGG | + | chr6_1:89971385-89971404 | Msa0897620:intron | 40.0% | |
| CTCTATTCCCATTCCTCTTA+GGG | + | chr6_1:89971386-89971405 | Msa0897620:intron | 40.0% | |
| CAAAGATTCCCTAAGAGGAA+TGG | - | chr6_1:89971397-89971416 | None:intergenic | 40.0% | |
| TTGCTTAAGTAGTGTCTCGT+GGG | + | chr6_1:89971637-89971656 | Msa0897620:intron | 40.0% | |
| ATATTATGAGTGAGTGGCAG+AGG | + | chr6_1:89971691-89971710 | Msa0897620:intron | 40.0% | |
| TATTATGAGTGAGTGGCAGA+GGG | + | chr6_1:89971692-89971711 | Msa0897620:intron | 40.0% | |
| AGAGAGAGCAGATGAATTCA+GGG | - | chr6_1:89971832-89971851 | None:intergenic | 40.0% | |
| AGTTATGAGAGAGAGAGAGA+GGG | - | chr6_1:89971884-89971903 | None:intergenic | 40.0% | |
| GTTGGGGAATGTTTAGATGA+AGG | - | chr6_1:89971959-89971978 | None:intergenic | 40.0% | |
| GCATAATATCTTAAGGTCCG+GGG | - | chr6_1:89972009-89972028 | None:intergenic | 40.0% | |
| GGCTCGATGATTTAACTCTA+AGG | - | chr6_1:89972521-89972540 | None:intergenic | 40.0% | |
| ! | ACAAAAGCGTGAACAACGAT+TGG | - | chr6_1:89972589-89972608 | None:intergenic | 40.0% |
| AATCAAACAAATCCCGTCCA+AGG | - | chr6_1:89973089-89973108 | None:intergenic | 40.0% | |
| ! | CGGGATTTGTTTGATTGTCA+TGG | + | chr6_1:89973093-89973112 | Msa0897620:CDS | 40.0% |
| TGGTGATAGAGCTACTACAT+CGG | + | chr6_1:89973113-89973132 | Msa0897620:CDS | 40.0% | |
| AGAGATGAAACTGCATGCAA+AGG | + | chr6_1:89973279-89973298 | Msa0897620:intron | 40.0% | |
| !! | TAAGCAGGTCCTTAGTTTTC+AGG | + | chr6_1:89973600-89973619 | Msa0897620:intron | 40.0% |
| !! | ACTAAGGAGTACCTTCATGA+AGG | + | chr6_1:89973907-89973926 | Msa0897620:CDS | 40.0% |
| AAGGACAATGTGAATCATCG+AGG | + | chr6_1:89973926-89973945 | Msa0897620:CDS | 40.0% | |
| CCTCTAAATCAAGATCAGCA+AGG | - | chr6_1:89974035-89974054 | None:intergenic | 40.0% | |
| CCTTGCTGATCTTGATTTAG+AGG | + | chr6_1:89974032-89974051 | Msa0897620:CDS | 40.0% | |
| ! | TTGTTGCTTCAATGTCACCA+TGG | - | chr6_1:89974092-89974111 | None:intergenic | 40.0% |
| TTGCAGCATACAAGTCTCAT+TGG | + | chr6_1:89974164-89974183 | Msa0897620:CDS | 40.0% | |
| ! | GCATACAAGTCTCATTGGTT+CGG | + | chr6_1:89974169-89974188 | Msa0897620:CDS | 40.0% |
| !! | TCTCATTGGTTCGGATTGTA+AGG | + | chr6_1:89974178-89974197 | Msa0897620:CDS | 40.0% |
| CAGAGAAACCTCACTTTGAC+CGG | + | chr6_1:89970993-89971012 | Msa0897620:intron | 45.0% | |
| AGAGAAACCTCACTTTGACC+GGG | + | chr6_1:89970994-89971013 | Msa0897620:intron | 45.0% | |
| CTAAATTCGGCAATAGGAGG+AGG | + | chr6_1:89971041-89971060 | Msa0897620:intron | 45.0% | |
| GTTGCTTAAGTAGTGTCTCG+TGG | + | chr6_1:89971636-89971655 | Msa0897620:intron | 45.0% | |
| !! | TGTAGAAGTGTCGACCTAGT+TGG | + | chr6_1:89971723-89971742 | Msa0897620:intron | 45.0% |
| !! | GTAGAAGTGTCGACCTAGTT+GGG | + | chr6_1:89971724-89971743 | Msa0897620:intron | 45.0% |
| ! | ATGGTCCATGGCTCTCTTTT+TGG | - | chr6_1:89971792-89971811 | None:intergenic | 45.0% |
| AAAAAGAGAGCCATGGACCA+TGG | + | chr6_1:89971791-89971810 | Msa0897620:intron | 45.0% | |
| AGAGAGCAGATGAATTCAGG+GGG | - | chr6_1:89971830-89971849 | None:intergenic | 45.0% | |
| GAGAGAGCAGATGAATTCAG+GGG | - | chr6_1:89971831-89971850 | None:intergenic | 45.0% | |
| GAGAGAGAGCAGATGAATTC+AGG | - | chr6_1:89971833-89971852 | None:intergenic | 45.0% | |
| TTATGAGAGAGAGAGAGAGG+GGG | - | chr6_1:89971882-89971901 | None:intergenic | 45.0% | |
| GTTATGAGAGAGAGAGAGAG+GGG | - | chr6_1:89971883-89971902 | None:intergenic | 45.0% | |
| GAGTTATGAGAGAGAGAGAG+AGG | - | chr6_1:89971885-89971904 | None:intergenic | 45.0% | |
| ATGTGATCCATAGTCGGTGT+CGG | + | chr6_1:89972322-89972341 | Msa0897620:intron | 45.0% | |
| ! | CAACGATTGGACTAGATCTG+AGG | - | chr6_1:89972576-89972595 | None:intergenic | 45.0% |
| AGGTATCCATCATCACTCGT+TGG | - | chr6_1:89972973-89972992 | None:intergenic | 45.0% | |
| !! | CGAATTGATTCGCATGTCCT+TGG | + | chr6_1:89973069-89973088 | Msa0897620:CDS | 45.0% |
| ! | TTGATTCGCATGTCCTTGGA+CGG | + | chr6_1:89973073-89973092 | Msa0897620:CDS | 45.0% |
| GGTGATAGAGCTACTACATC+GGG | + | chr6_1:89973114-89973133 | Msa0897620:CDS | 45.0% | |
| ATCACCTTCTGCAGCACATA+AGG | - | chr6_1:89973156-89973175 | None:intergenic | 45.0% | |
| CAGGAATTGATTGCAAGGGA+AGG | + | chr6_1:89973712-89973731 | Msa0897620:intron | 45.0% | |
| AAACTTATCGTCCTTAGCGG+CGG | - | chr6_1:89973747-89973766 | None:intergenic | 45.0% | |
| ATTGTTGGATTCACCTCTGC+CGG | + | chr6_1:89973845-89973864 | Msa0897620:CDS | 45.0% | |
| ATCAAATAGGTTACCGGCAG+AGG | - | chr6_1:89973861-89973880 | None:intergenic | 45.0% | |
| CATCAACATGCTCAAGAAGG+TGG | + | chr6_1:89973978-89973997 | Msa0897620:CDS | 45.0% | |
| AAGGTGGAGGAAGTTGACAA+AGG | + | chr6_1:89973994-89974013 | Msa0897620:CDS | 45.0% | |
| !! | GCTTCATTGAAAGTGCTCCA+TGG | + | chr6_1:89974072-89974091 | Msa0897620:CDS | 45.0% |
| !! | ATAATATATATTAATGAAAA+GGG | - | chr6_1:89971678-89971697 | None:intergenic | 5.0% |
| !! | AAACATAAAAAATAAAAAAT+TGG | - | chr6_1:89972103-89972122 | None:intergenic | 5.0% |
| !!! | AATTTTTTATTTTTTATGTT+TGG | + | chr6_1:89972102-89972121 | Msa0897620:intron | 5.0% |
| AGATGAATTCAGGGGGAGGT+GGG | - | chr6_1:89971823-89971842 | None:intergenic | 50.0% | |
| TATGAGAGAGAGAGAGAGGG+GGG | - | chr6_1:89971881-89971900 | None:intergenic | 50.0% | |
| ! | ATTACCACCGACACCGACTA+TGG | - | chr6_1:89972332-89972351 | None:intergenic | 50.0% |
| TGATTCGCATGTCCTTGGAC+GGG | + | chr6_1:89973074-89973093 | Msa0897620:CDS | 50.0% | |
| GATAGAGCTACTACATCGGG+AGG | + | chr6_1:89973117-89973136 | Msa0897620:CDS | 50.0% | |
| ACCTCCTTATGTGCTGCAGA+AGG | + | chr6_1:89973149-89973168 | Msa0897620:CDS | 50.0% | |
| ACCTTCTGCAGCACATAAGG+AGG | - | chr6_1:89973153-89973172 | None:intergenic | 50.0% | |
| CAGCGATGCTGCTACTAGAT+TGG | + | chr6_1:89973342-89973361 | Msa0897620:intron | 50.0% | |
| CAACATGCTCAAGAAGGTGG+AGG | + | chr6_1:89973981-89974000 | Msa0897620:CDS | 50.0% | |
| GCACAATCCCGGTCAAAGTG+AGG | - | chr6_1:89971004-89971023 | None:intergenic | 55.0% | |
| ATTCGGCAATAGGAGGAGGG+TGG | + | chr6_1:89971045-89971064 | Msa0897620:intron | 55.0% | |
| AAAGACGTAGGTTCGGGGCA+GGG | - | chr6_1:89971086-89971105 | None:intergenic | 55.0% | |
| TAAAGACGTAGGTTCGGGGC+AGG | - | chr6_1:89971087-89971106 | None:intergenic | 55.0% | |
| AAGTAGTGTCTCGTGGGCAC+TGG | + | chr6_1:89971643-89971662 | Msa0897620:intron | 55.0% | |
| CAGATGAATTCAGGGGGAGG+TGG | - | chr6_1:89971824-89971843 | None:intergenic | 55.0% | |
| GAGCAGATGAATTCAGGGGG+AGG | - | chr6_1:89971827-89971846 | None:intergenic | 55.0% | |
| ATGAGAGAGAGAGAGAGGGG+GGG | - | chr6_1:89971880-89971899 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTACCTCAGT+TGG | - | chr6_1:89972042-89972061 | None:intergenic | 55.0% | |
| CCAACTGAGGTAAGCTCACG+AGG | + | chr6_1:89972039-89972058 | Msa0897620:intron | 55.0% | |
| !! | TGATCCATAGTCGGTGTCGG+TGG | + | chr6_1:89972325-89972344 | Msa0897620:intron | 55.0% |
| TTAAGGAGCCCTCGTAGTCG+TGG | + | chr6_1:89972463-89972482 | Msa0897620:intron | 55.0% | |
| GTGAGCAACCACGACTACGA+GGG | - | chr6_1:89972474-89972493 | None:intergenic | 55.0% | |
| ATTCAGGGGGAGGTGGGTGT+GGG | - | chr6_1:89971817-89971836 | None:intergenic | 60.0% | |
| AATTCAGGGGGAGGTGGGTG+TGG | - | chr6_1:89971818-89971837 | None:intergenic | 60.0% | |
| TGAGAGAGAGAGAGAGGGGG+GGG | - | chr6_1:89971879-89971898 | None:intergenic | 60.0% | |
| CATTGCCGGGGTTTGAACCC+CGG | + | chr6_1:89971989-89972008 | Msa0897620:intron | 60.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | - | chr6_1:89971997-89972016 | None:intergenic | 60.0% | |
| GGTGAGCAACCACGACTACG+AGG | - | chr6_1:89972475-89972494 | None:intergenic | 60.0% | |
| GGCATGTGAATCCGCCGCTA+AGG | + | chr6_1:89973733-89973752 | Msa0897620:intron | 60.0% | |
| TGGGTGTGGGCCATGGTCCA+TGG | - | chr6_1:89971804-89971823 | None:intergenic | 65.0% | |
| GGGGGGGGAGAGAAGAGAGA+GGG | - | chr6_1:89971861-89971880 | None:intergenic | 65.0% | |
| AGAGAGAGAGAGAGGGGGGG+GGG | - | chr6_1:89971877-89971896 | None:intergenic | 65.0% | |
| GAGAGAGAGAGAGAGGGGGG+GGG | - | chr6_1:89971878-89971897 | None:intergenic | 65.0% | |
| GGGGGGGGGAGAGAAGAGAG+AGG | - | chr6_1:89971862-89971881 | None:intergenic | 70.0% | |
| GAGAGAGAGAGAGGGGGGGG+GGG | - | chr6_1:89971876-89971895 | None:intergenic | 70.0% | |
| GGGGAGGTGGGTGTGGGCCA+TGG | - | chr6_1:89971811-89971830 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 89970939 | 89974224 | 89970939 | ID=Msa0897620;Name=Msa0897620 |
| chr6_1 | mRNA | 89970939 | 89974224 | 89970939 | ID=Msa0897620-mRNA-1;Parent=Msa0897620;Name=Msa0897620-mRNA-1;_AED=0.50;_eAED=0.51;_QI=0|0|0|0.75|0|0|4|0|195 |
| chr6_1 | exon | 89970939 | 89970946 | 89970939 | ID=Msa0897620-mRNA-1:exon:15291;Parent=Msa0897620-mRNA-1 |
| chr6_1 | exon | 89972978 | 89973170 | 89972978 | ID=Msa0897620-mRNA-1:exon:15292;Parent=Msa0897620-mRNA-1 |
| chr6_1 | exon | 89973803 | 89973866 | 89973803 | ID=Msa0897620-mRNA-1:exon:15293;Parent=Msa0897620-mRNA-1 |
| chr6_1 | exon | 89973902 | 89974224 | 89973902 | ID=Msa0897620-mRNA-1:exon:15294;Parent=Msa0897620-mRNA-1 |
| chr6_1 | CDS | 89970939 | 89970946 | 89970939 | ID=Msa0897620-mRNA-1:cds;Parent=Msa0897620-mRNA-1 |
| chr6_1 | CDS | 89972978 | 89973170 | 89972978 | ID=Msa0897620-mRNA-1:cds;Parent=Msa0897620-mRNA-1 |
| chr6_1 | CDS | 89973803 | 89973866 | 89973803 | ID=Msa0897620-mRNA-1:cds;Parent=Msa0897620-mRNA-1 |
| chr6_1 | CDS | 89973902 | 89974224 | 89973902 | ID=Msa0897620-mRNA-1:cds;Parent=Msa0897620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
