Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898110 | KEH27010.1 | 68.462 | 130 | 35 | 2 | 19 | 146 | 1 | 126 | 8.67e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898110 | A0A072UMC8 | 68.462 | 130 | 35 | 2 | 19 | 146 | 1 | 126 | 4.14e-47 | 160 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0898110 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898110 | MtrunA17_Chr8g0339041 | 73.973 | 73 | 19 | 0 | 1 | 73 | 254 | 326 | 8.04e-29 | 109 |
| Msa0898110 | MtrunA17_Chr8g0370511 | 38.788 | 165 | 56 | 3 | 13 | 141 | 275 | 430 | 2.07e-22 | 93.2 |
| Msa0898110 | MtrunA17_Chr8g0339021 | 39.024 | 164 | 53 | 4 | 17 | 143 | 273 | 426 | 3.28e-22 | 92.8 |
| Msa0898110 | MtrunA17_Chr5g0420331 | 45.794 | 107 | 22 | 1 | 73 | 143 | 327 | 433 | 8.16e-19 | 82.8 |
| Msa0898110 | MtrunA17_Chr3g0114401 | 46.154 | 104 | 20 | 1 | 73 | 140 | 207 | 310 | 1.04e-18 | 82.4 |
| Msa0898110 | MtrunA17_Chr8g0339031 | 43.269 | 104 | 23 | 1 | 73 | 140 | 336 | 439 | 6.57e-18 | 80.1 |
| Msa0898110 | MtrunA17_Chr7g0223531 | 39.850 | 133 | 42 | 3 | 73 | 168 | 337 | 468 | 4.37e-17 | 77.8 |
| Msa0898110 | MtrunA17_Chr3g0085541 | 37.594 | 133 | 46 | 2 | 73 | 168 | 339 | 471 | 4.31e-16 | 75.1 |
| Msa0898110 | MtrunA17_Chr8g0343801 | 34.756 | 164 | 56 | 3 | 16 | 140 | 283 | 434 | 1.35e-15 | 73.6 |
| Msa0898110 | MtrunA17_Chr8g0338901 | 74.286 | 35 | 9 | 0 | 107 | 141 | 417 | 451 | 3.73e-11 | 60.8 |
| Msa0898110 | MtrunA17_Chr5g0414761 | 44.444 | 63 | 34 | 1 | 107 | 168 | 182 | 244 | 9.73e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTTAGAAGATTATAAA+AGG | 0.336953 | 6_1:+90946013 | Msa0898110:CDS |
| GACATATGTTGGTTATTCAT+TGG | 0.343899 | 6_1:+90946047 | Msa0898110:CDS |
| TTCTGTTGCACTTGATCGTT+GGG | 0.380421 | 6_1:-90945973 | None:intergenic |
| ATATCTTGTATCTTCATTGC+TGG | 0.382970 | 6_1:-90944603 | None:intergenic |
| TATGACATTGTCAACTGATA+AGG | 0.397671 | 6_1:+90944464 | None:intergenic |
| AGCAATGAAGATACAAGATA+TGG | 0.413373 | 6_1:+90944605 | Msa0898110:CDS |
| TTGAGAGGACAAAACAAGAA+TGG | 0.465367 | 6_1:+90945920 | Msa0898110:intron |
| TTTCTGTTGCACTTGATCGT+TGG | 0.472693 | 6_1:-90945974 | None:intergenic |
| AGGACTTGGTTCACCAAAGC+AGG | 0.487386 | 6_1:-90945830 | None:intergenic |
| AACTCAAAAGTTCAAGTGAC+TGG | 0.487878 | 6_1:-90945805 | None:intergenic |
| TTCATTGCTGGAAGCACTCG+TGG | 0.528973 | 6_1:-90944591 | None:intergenic |
| CAGCACTAAGTGATTTGAGA+AGG | 0.554021 | 6_1:-90945748 | None:intergenic |
| AAACTGAGAATCAGCTTCGA+TGG | 0.562444 | 6_1:+90945994 | Msa0898110:CDS |
| AGCACTAAGTGATTTGAGAA+GGG | 0.562509 | 6_1:-90945747 | None:intergenic |
| GCACTAAGTGATTTGAGAAG+GGG | 0.584907 | 6_1:-90945746 | None:intergenic |
| GCTCAATACTTGAAGCATTG+AGG | 0.596101 | 6_1:+90944646 | Msa0898110:CDS |
| CATTGAGGATGTCAGAGGAG+AGG | 0.607342 | 6_1:+90944661 | Msa0898110:CDS |
| TTTCTGCCATTGTGAAAACA+TGG | 0.629373 | 6_1:-90945772 | None:intergenic |
| TGTCAACTGATAAGGTTCAG+TGG | 0.649714 | 6_1:+90944472 | Msa0898110:CDS |
| TGAAGCATTGAGGATGTCAG+AGG | 0.654982 | 6_1:+90944656 | Msa0898110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAGTAATTCAGAAA+GGG | - | chr6_1:90944779-90944798 | None:intergenic | 15.0% |
| !! | AAAAAAATTTATCCTTATTG+CGG | + | chr6_1:90945875-90945894 | Msa0898110:intron | 15.0% |
| !! | ATATAAAAGTAATTCAGAAA+GGG | - | chr6_1:90944779-90944798 | None:intergenic | 15.0% |
| !! | AAAAAAATTTATCCTTATTG+CGG | + | chr6_1:90945875-90945894 | Msa0898110:intron | 15.0% |
| !! | ATTCAATTAAATCATCATCA+TGG | - | chr6_1:90944710-90944729 | None:intergenic | 20.0% |
| !! | CATATAAAAGTAATTCAGAA+AGG | - | chr6_1:90944780-90944799 | None:intergenic | 20.0% |
| !! | AGAAATGATTGAAACAATTA+TGG | - | chr6_1:90945014-90945033 | None:intergenic | 20.0% |
| !! | TTTATAACTATTATTACCGA+AGG | + | chr6_1:90945230-90945249 | Msa0898110:intron | 20.0% |
| !! | TCAAATCCATAGTAAATTTA+AGG | + | chr6_1:90945442-90945461 | Msa0898110:intron | 20.0% |
| !! | CAAATCCATAGTAAATTTAA+GGG | + | chr6_1:90945443-90945462 | Msa0898110:intron | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | + | chr6_1:90945574-90945593 | Msa0898110:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | + | chr6_1:90945575-90945594 | Msa0898110:intron | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | + | chr6_1:90945686-90945705 | Msa0898110:intron | 20.0% |
| !! | ATGGTTTAGAAGATTATAAA+AGG | + | chr6_1:90946013-90946032 | Msa0898110:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | + | chr6_1:90946036-90946055 | Msa0898110:CDS | 20.0% |
| !! | ATTCAATTAAATCATCATCA+TGG | - | chr6_1:90944710-90944729 | None:intergenic | 20.0% |
| !! | CATATAAAAGTAATTCAGAA+AGG | - | chr6_1:90944780-90944799 | None:intergenic | 20.0% |
| !! | AGAAATGATTGAAACAATTA+TGG | - | chr6_1:90945014-90945033 | None:intergenic | 20.0% |
| !! | TTTATAACTATTATTACCGA+AGG | + | chr6_1:90945230-90945249 | Msa0898110:intron | 20.0% |
| !! | TCAAATCCATAGTAAATTTA+AGG | + | chr6_1:90945442-90945461 | Msa0898110:intron | 20.0% |
| !! | CAAATCCATAGTAAATTTAA+GGG | + | chr6_1:90945443-90945462 | Msa0898110:intron | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | + | chr6_1:90945574-90945593 | Msa0898110:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | + | chr6_1:90945575-90945594 | Msa0898110:intron | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | + | chr6_1:90945686-90945705 | Msa0898110:intron | 20.0% |
| !! | ATGGTTTAGAAGATTATAAA+AGG | + | chr6_1:90946013-90946032 | Msa0898110:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | + | chr6_1:90946036-90946055 | Msa0898110:CDS | 20.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | + | chr6_1:90944492-90944511 | Msa0898110:CDS | 25.0% |
| ! | TATCAGCAAACAAGAAAAAT+GGG | - | chr6_1:90944554-90944573 | None:intergenic | 25.0% |
| ! | ATATCAGCAAACAAGAAAAA+TGG | - | chr6_1:90944555-90944574 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCTGATA+TGG | + | chr6_1:90944554-90944573 | Msa0898110:CDS | 25.0% |
| ! | ATTAAGAATTGTACTACTAG+AGG | + | chr6_1:90944750-90944769 | Msa0898110:intron | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | - | chr6_1:90944822-90944841 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTGTGATTATG+AGG | + | chr6_1:90945178-90945197 | Msa0898110:intron | 25.0% |
| ! | TCCTCATAATCACAAAAAAT+TGG | - | chr6_1:90945182-90945201 | None:intergenic | 25.0% |
| ! | TCTATTACTGAATATCTGAT+TGG | + | chr6_1:90945319-90945338 | Msa0898110:intron | 25.0% |
| !!! | ATTCAGTAATTTGTTGAACA+CGG | - | chr6_1:90945354-90945373 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | + | chr6_1:90945365-90945384 | Msa0898110:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | + | chr6_1:90945366-90945385 | Msa0898110:intron | 25.0% |
| ! | TTCTACCCTTAAATTTACTA+TGG | - | chr6_1:90945451-90945470 | None:intergenic | 25.0% |
| !!! | ATCTTATCCTTTATTTTCAG+TGG | - | chr6_1:90945560-90945579 | None:intergenic | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | - | chr6_1:90945684-90945703 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | - | chr6_1:90945685-90945704 | None:intergenic | 25.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | + | chr6_1:90944492-90944511 | Msa0898110:CDS | 25.0% |
| ! | TATCAGCAAACAAGAAAAAT+GGG | - | chr6_1:90944554-90944573 | None:intergenic | 25.0% |
| ! | ATATCAGCAAACAAGAAAAA+TGG | - | chr6_1:90944555-90944574 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCTGATA+TGG | + | chr6_1:90944554-90944573 | Msa0898110:CDS | 25.0% |
| ! | ATTAAGAATTGTACTACTAG+AGG | + | chr6_1:90944750-90944769 | Msa0898110:intron | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | - | chr6_1:90944822-90944841 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTGTGATTATG+AGG | + | chr6_1:90945178-90945197 | Msa0898110:intron | 25.0% |
| ! | TCCTCATAATCACAAAAAAT+TGG | - | chr6_1:90945182-90945201 | None:intergenic | 25.0% |
| ! | TCTATTACTGAATATCTGAT+TGG | + | chr6_1:90945319-90945338 | Msa0898110:intron | 25.0% |
| !!! | ATTCAGTAATTTGTTGAACA+CGG | - | chr6_1:90945354-90945373 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | + | chr6_1:90945365-90945384 | Msa0898110:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | + | chr6_1:90945366-90945385 | Msa0898110:intron | 25.0% |
| ! | TTCTACCCTTAAATTTACTA+TGG | - | chr6_1:90945451-90945470 | None:intergenic | 25.0% |
| !!! | ATCTTATCCTTTATTTTCAG+TGG | - | chr6_1:90945560-90945579 | None:intergenic | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | - | chr6_1:90945684-90945703 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | - | chr6_1:90945685-90945704 | None:intergenic | 25.0% |
| ATATCTTGTATCTTCATTGC+TGG | - | chr6_1:90944606-90944625 | None:intergenic | 30.0% | |
| AGCAATGAAGATACAAGATA+TGG | + | chr6_1:90944605-90944624 | Msa0898110:CDS | 30.0% | |
| TTAAATCATCATCATGGCAT+TGG | - | chr6_1:90944704-90944723 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | + | chr6_1:90944820-90944839 | Msa0898110:intron | 30.0% |
| GACAGACAAAGAATCAATTT+CGG | - | chr6_1:90944861-90944880 | None:intergenic | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | - | chr6_1:90944905-90944924 | None:intergenic | 30.0% | |
| TACTGAATATCTGATTGGAT+TGG | + | chr6_1:90945324-90945343 | Msa0898110:intron | 30.0% | |
| !! | TTCAGTAATTTGTTGAACAC+GGG | - | chr6_1:90945353-90945372 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | + | chr6_1:90945373-90945392 | Msa0898110:intron | 30.0% | |
| TTCAGATCCACTGAAAATAA+AGG | + | chr6_1:90945550-90945569 | Msa0898110:intron | 30.0% | |
| TCTCAAATAAGTAACAACCA+AGG | - | chr6_1:90945906-90945925 | None:intergenic | 30.0% | |
| ! | TTGGTTGTTACTTATTTGAG+AGG | + | chr6_1:90945905-90945924 | Msa0898110:intron | 30.0% |
| ! | GACATATGTTGGTTATTCAT+TGG | + | chr6_1:90946047-90946066 | Msa0898110:CDS | 30.0% |
| ATATCTTGTATCTTCATTGC+TGG | - | chr6_1:90944606-90944625 | None:intergenic | 30.0% | |
| AGCAATGAAGATACAAGATA+TGG | + | chr6_1:90944605-90944624 | Msa0898110:CDS | 30.0% | |
| TTAAATCATCATCATGGCAT+TGG | - | chr6_1:90944704-90944723 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | + | chr6_1:90944820-90944839 | Msa0898110:intron | 30.0% |
| GACAGACAAAGAATCAATTT+CGG | - | chr6_1:90944861-90944880 | None:intergenic | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | - | chr6_1:90944905-90944924 | None:intergenic | 30.0% | |
| TACTGAATATCTGATTGGAT+TGG | + | chr6_1:90945324-90945343 | Msa0898110:intron | 30.0% | |
| !! | TTCAGTAATTTGTTGAACAC+GGG | - | chr6_1:90945353-90945372 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | + | chr6_1:90945373-90945392 | Msa0898110:intron | 30.0% | |
| TTCAGATCCACTGAAAATAA+AGG | + | chr6_1:90945550-90945569 | Msa0898110:intron | 30.0% | |
| TCTCAAATAAGTAACAACCA+AGG | - | chr6_1:90945906-90945925 | None:intergenic | 30.0% | |
| ! | TTGGTTGTTACTTATTTGAG+AGG | + | chr6_1:90945905-90945924 | Msa0898110:intron | 30.0% |
| ! | GACATATGTTGGTTATTCAT+TGG | + | chr6_1:90946047-90946066 | Msa0898110:CDS | 30.0% |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | + | chr6_1:90944901-90944920 | Msa0898110:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | + | chr6_1:90945076-90945095 | Msa0898110:intron | 35.0% | |
| !! | TCAGTAATTTGTTGAACACG+GGG | - | chr6_1:90945352-90945371 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | + | chr6_1:90945374-90945393 | Msa0898110:intron | 35.0% | |
| !! | ATTTTCAGTGGATCTGAAGT+TGG | - | chr6_1:90945548-90945567 | None:intergenic | 35.0% |
| TAAGATCTAGTGAAGACTAC+AGG | + | chr6_1:90945604-90945623 | Msa0898110:intron | 35.0% | |
| AAGATCTAGTGAAGACTACA+GGG | + | chr6_1:90945605-90945624 | Msa0898110:intron | 35.0% | |
| AGCACTAAGTGATTTGAGAA+GGG | - | chr6_1:90945750-90945769 | None:intergenic | 35.0% | |
| TTTCTGCCATTGTGAAAACA+TGG | - | chr6_1:90945775-90945794 | None:intergenic | 35.0% | |
| ! | TGTTTTCACAATGGCAGAAA+TGG | + | chr6_1:90945775-90945794 | Msa0898110:CDS | 35.0% |
| AACTCAAAAGTTCAAGTGAC+TGG | - | chr6_1:90945808-90945827 | None:intergenic | 35.0% | |
| !! | AGTCACTTGAACTTTTGAGT+TGG | + | chr6_1:90945807-90945826 | Msa0898110:CDS | 35.0% |
| TTGAGAGGACAAAACAAGAA+TGG | + | chr6_1:90945920-90945939 | Msa0898110:intron | 35.0% | |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | + | chr6_1:90944901-90944920 | Msa0898110:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | + | chr6_1:90945076-90945095 | Msa0898110:intron | 35.0% | |
| !! | TCAGTAATTTGTTGAACACG+GGG | - | chr6_1:90945352-90945371 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | + | chr6_1:90945374-90945393 | Msa0898110:intron | 35.0% | |
| !! | ATTTTCAGTGGATCTGAAGT+TGG | - | chr6_1:90945548-90945567 | None:intergenic | 35.0% |
| TAAGATCTAGTGAAGACTAC+AGG | + | chr6_1:90945604-90945623 | Msa0898110:intron | 35.0% | |
| AAGATCTAGTGAAGACTACA+GGG | + | chr6_1:90945605-90945624 | Msa0898110:intron | 35.0% | |
| AGCACTAAGTGATTTGAGAA+GGG | - | chr6_1:90945750-90945769 | None:intergenic | 35.0% | |
| TTTCTGCCATTGTGAAAACA+TGG | - | chr6_1:90945775-90945794 | None:intergenic | 35.0% | |
| ! | TGTTTTCACAATGGCAGAAA+TGG | + | chr6_1:90945775-90945794 | Msa0898110:CDS | 35.0% |
| AACTCAAAAGTTCAAGTGAC+TGG | - | chr6_1:90945808-90945827 | None:intergenic | 35.0% | |
| !! | AGTCACTTGAACTTTTGAGT+TGG | + | chr6_1:90945807-90945826 | Msa0898110:CDS | 35.0% |
| TTGAGAGGACAAAACAAGAA+TGG | + | chr6_1:90945920-90945939 | Msa0898110:intron | 35.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | + | chr6_1:90944472-90944491 | Msa0898110:CDS | 40.0% | |
| !! | GCTCAATACTTGAAGCATTG+AGG | + | chr6_1:90944646-90944665 | Msa0898110:CDS | 40.0% |
| TCAGTTCACTTTCACTCCTT+CGG | - | chr6_1:90945249-90945268 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | - | chr6_1:90945663-90945682 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | - | chr6_1:90945698-90945717 | None:intergenic | 40.0% | |
| GCACTAAGTGATTTGAGAAG+GGG | - | chr6_1:90945749-90945768 | None:intergenic | 40.0% | |
| CAGCACTAAGTGATTTGAGA+AGG | - | chr6_1:90945751-90945770 | None:intergenic | 40.0% | |
| ! | TGCTGACCATGTTTTCACAA+TGG | + | chr6_1:90945766-90945785 | Msa0898110:CDS | 40.0% |
| AGTTCACTAAAATCGTCTCC+AGG | - | chr6_1:90945853-90945872 | None:intergenic | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | - | chr6_1:90945976-90945995 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | - | chr6_1:90945977-90945996 | None:intergenic | 40.0% | |
| AAACTGAGAATCAGCTTCGA+TGG | + | chr6_1:90945994-90946013 | Msa0898110:CDS | 40.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | + | chr6_1:90944472-90944491 | Msa0898110:CDS | 40.0% | |
| !! | GCTCAATACTTGAAGCATTG+AGG | + | chr6_1:90944646-90944665 | Msa0898110:CDS | 40.0% |
| TCAGTTCACTTTCACTCCTT+CGG | - | chr6_1:90945249-90945268 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | - | chr6_1:90945663-90945682 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | - | chr6_1:90945698-90945717 | None:intergenic | 40.0% | |
| GCACTAAGTGATTTGAGAAG+GGG | - | chr6_1:90945749-90945768 | None:intergenic | 40.0% | |
| CAGCACTAAGTGATTTGAGA+AGG | - | chr6_1:90945751-90945770 | None:intergenic | 40.0% | |
| ! | TGCTGACCATGTTTTCACAA+TGG | + | chr6_1:90945766-90945785 | Msa0898110:CDS | 40.0% |
| AGTTCACTAAAATCGTCTCC+AGG | - | chr6_1:90945853-90945872 | None:intergenic | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | - | chr6_1:90945976-90945995 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | - | chr6_1:90945977-90945996 | None:intergenic | 40.0% | |
| AAACTGAGAATCAGCTTCGA+TGG | + | chr6_1:90945994-90946013 | Msa0898110:CDS | 40.0% | |
| !! | TGAAGCATTGAGGATGTCAG+AGG | + | chr6_1:90944656-90944675 | Msa0898110:CDS | 45.0% |
| GTTGCAGGTGTCAGTTAACT+AGG | + | chr6_1:90944916-90944935 | Msa0898110:intron | 45.0% | |
| !! | AAATTGCAGGACTAGCTAGC+TGG | + | chr6_1:90945112-90945131 | Msa0898110:intron | 45.0% |
| ATAGGGATATCGGGAATGTG+TGG | + | chr6_1:90945383-90945402 | Msa0898110:intron | 45.0% | |
| GTGAAGACTACAGGGACAAT+AGG | + | chr6_1:90945613-90945632 | Msa0898110:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | - | chr6_1:90945645-90945664 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | + | chr6_1:90945648-90945667 | Msa0898110:intron | 45.0% | |
| !!! | ACTTTTGAGTTGGCCTGCTT+TGG | + | chr6_1:90945817-90945836 | Msa0898110:CDS | 45.0% |
| CTAAAATCGTCTCCAGGACT+TGG | - | chr6_1:90945847-90945866 | None:intergenic | 45.0% | |
| TCCTTATTGCGGAAAGTCCT+TGG | + | chr6_1:90945886-90945905 | Msa0898110:intron | 45.0% | |
| ACCAAGGACTTTCCGCAATA+AGG | - | chr6_1:90945890-90945909 | None:intergenic | 45.0% | |
| !! | TGAAGCATTGAGGATGTCAG+AGG | + | chr6_1:90944656-90944675 | Msa0898110:CDS | 45.0% |
| GTTGCAGGTGTCAGTTAACT+AGG | + | chr6_1:90944916-90944935 | Msa0898110:intron | 45.0% | |
| !! | AAATTGCAGGACTAGCTAGC+TGG | + | chr6_1:90945112-90945131 | Msa0898110:intron | 45.0% |
| ATAGGGATATCGGGAATGTG+TGG | + | chr6_1:90945383-90945402 | Msa0898110:intron | 45.0% | |
| GTGAAGACTACAGGGACAAT+AGG | + | chr6_1:90945613-90945632 | Msa0898110:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | - | chr6_1:90945645-90945664 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | + | chr6_1:90945648-90945667 | Msa0898110:intron | 45.0% | |
| !!! | ACTTTTGAGTTGGCCTGCTT+TGG | + | chr6_1:90945817-90945836 | Msa0898110:CDS | 45.0% |
| CTAAAATCGTCTCCAGGACT+TGG | - | chr6_1:90945847-90945866 | None:intergenic | 45.0% | |
| TCCTTATTGCGGAAAGTCCT+TGG | + | chr6_1:90945886-90945905 | Msa0898110:intron | 45.0% | |
| ACCAAGGACTTTCCGCAATA+AGG | - | chr6_1:90945890-90945909 | None:intergenic | 45.0% | |
| !!! | ATTTAATTGAATTTTATAAA+AGG | + | chr6_1:90944718-90944737 | Msa0898110:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTGTA+TGG | + | chr6_1:90944966-90944985 | Msa0898110:intron | 5.0% |
| !! | ATAATAAATAATAATAGTAA+AGG | + | chr6_1:90945504-90945523 | Msa0898110:intron | 5.0% |
| !! | TAATAAATAATAATAGTAAA+GGG | + | chr6_1:90945505-90945524 | Msa0898110:intron | 5.0% |
| !!! | ATTTAATTGAATTTTATAAA+AGG | + | chr6_1:90944718-90944737 | Msa0898110:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTGTA+TGG | + | chr6_1:90944966-90944985 | Msa0898110:intron | 5.0% |
| !! | ATAATAAATAATAATAGTAA+AGG | + | chr6_1:90945504-90945523 | Msa0898110:intron | 5.0% |
| !! | TAATAAATAATAATAGTAAA+GGG | + | chr6_1:90945505-90945524 | Msa0898110:intron | 5.0% |
| !! | TTCATTGCTGGAAGCACTCG+TGG | - | chr6_1:90944594-90944613 | None:intergenic | 50.0% |
| CATTGAGGATGTCAGAGGAG+AGG | + | chr6_1:90944661-90944680 | Msa0898110:CDS | 50.0% | |
| GCTGGTATACTCGCAGTTTC+AGG | + | chr6_1:90945130-90945149 | Msa0898110:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | + | chr6_1:90945390-90945409 | Msa0898110:intron | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | + | chr6_1:90945647-90945666 | Msa0898110:intron | 50.0% | |
| ! | AGGACTTGGTTCACCAAAGC+AGG | - | chr6_1:90945833-90945852 | None:intergenic | 50.0% |
| TGCTTTGGTGAACCAAGTCC+TGG | + | chr6_1:90945832-90945851 | Msa0898110:intron | 50.0% | |
| !! | TTCATTGCTGGAAGCACTCG+TGG | - | chr6_1:90944594-90944613 | None:intergenic | 50.0% |
| CATTGAGGATGTCAGAGGAG+AGG | + | chr6_1:90944661-90944680 | Msa0898110:CDS | 50.0% | |
| GCTGGTATACTCGCAGTTTC+AGG | + | chr6_1:90945130-90945149 | Msa0898110:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | + | chr6_1:90945390-90945409 | Msa0898110:intron | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | + | chr6_1:90945647-90945666 | Msa0898110:intron | 50.0% | |
| ! | AGGACTTGGTTCACCAAAGC+AGG | - | chr6_1:90945833-90945852 | None:intergenic | 50.0% |
| TGCTTTGGTGAACCAAGTCC+TGG | + | chr6_1:90945832-90945851 | Msa0898110:intron | 50.0% | |
| ! | TGCGAGTGCGCTCCTCATTT+TGG | - | chr6_1:90945091-90945110 | None:intergenic | 55.0% |
| AGCGCACTCGCAGAAATTGC+AGG | + | chr6_1:90945099-90945118 | Msa0898110:intron | 55.0% | |
| ! | TGCGAGTGCGCTCCTCATTT+TGG | - | chr6_1:90945091-90945110 | None:intergenic | 55.0% |
| AGCGCACTCGCAGAAATTGC+AGG | + | chr6_1:90945099-90945118 | Msa0898110:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 90944465 | 90946125 | 90944465 | ID=Msa0898110;Name=Msa0898110 |
| chr6_1 | mRNA | 90944465 | 90946125 | 90944465 | ID=Msa0898110-mRNA-1;Parent=Msa0898110;Name=Msa0898110-mRNA-1;_AED=0.10;_eAED=0.28;_QI=0|0|0|1|0|0|3|0|172 |
| chr6_1 | exon | 90944465 | 90944682 | 90944465 | ID=Msa0898110-mRNA-1:exon:15486;Parent=Msa0898110-mRNA-1 |
| chr6_1 | exon | 90945739 | 90945838 | 90945739 | ID=Msa0898110-mRNA-1:exon:15487;Parent=Msa0898110-mRNA-1 |
| chr6_1 | exon | 90945925 | 90946125 | 90945925 | ID=Msa0898110-mRNA-1:exon:15488;Parent=Msa0898110-mRNA-1 |
| chr6_1 | CDS | 90944465 | 90944682 | 90944465 | ID=Msa0898110-mRNA-1:cds;Parent=Msa0898110-mRNA-1 |
| chr6_1 | CDS | 90945739 | 90945838 | 90945739 | ID=Msa0898110-mRNA-1:cds;Parent=Msa0898110-mRNA-1 |
| chr6_1 | CDS | 90945925 | 90946125 | 90945925 | ID=Msa0898110-mRNA-1:cds;Parent=Msa0898110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
