Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898160 | KEH27010.1 | 68.462 | 130 | 35 | 2 | 19 | 146 | 1 | 126 | 8.67e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898160 | A0A072UMC8 | 68.462 | 130 | 35 | 2 | 19 | 146 | 1 | 126 | 4.14e-47 | 160 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0898160 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898160 | MtrunA17_Chr8g0339041 | 73.973 | 73 | 19 | 0 | 1 | 73 | 254 | 326 | 8.04e-29 | 109 |
| Msa0898160 | MtrunA17_Chr8g0370511 | 38.788 | 165 | 56 | 3 | 13 | 141 | 275 | 430 | 2.07e-22 | 93.2 |
| Msa0898160 | MtrunA17_Chr8g0339021 | 39.024 | 164 | 53 | 4 | 17 | 143 | 273 | 426 | 3.28e-22 | 92.8 |
| Msa0898160 | MtrunA17_Chr5g0420331 | 45.794 | 107 | 22 | 1 | 73 | 143 | 327 | 433 | 8.16e-19 | 82.8 |
| Msa0898160 | MtrunA17_Chr3g0114401 | 46.154 | 104 | 20 | 1 | 73 | 140 | 207 | 310 | 1.04e-18 | 82.4 |
| Msa0898160 | MtrunA17_Chr8g0339031 | 43.269 | 104 | 23 | 1 | 73 | 140 | 336 | 439 | 6.57e-18 | 80.1 |
| Msa0898160 | MtrunA17_Chr7g0223531 | 39.850 | 133 | 42 | 3 | 73 | 168 | 337 | 468 | 4.37e-17 | 77.8 |
| Msa0898160 | MtrunA17_Chr3g0085541 | 37.594 | 133 | 46 | 2 | 73 | 168 | 339 | 471 | 4.31e-16 | 75.1 |
| Msa0898160 | MtrunA17_Chr8g0343801 | 34.756 | 164 | 56 | 3 | 16 | 140 | 283 | 434 | 1.35e-15 | 73.6 |
| Msa0898160 | MtrunA17_Chr8g0338901 | 74.286 | 35 | 9 | 0 | 107 | 141 | 417 | 451 | 3.73e-11 | 60.8 |
| Msa0898160 | MtrunA17_Chr5g0414761 | 44.444 | 63 | 34 | 1 | 107 | 168 | 182 | 244 | 9.73e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTTAGAAGATTATAAA+AGG | 0.336953 | 6_1:-91097797 | Msa0898160:CDS |
| GACATATGTTGGTTATTCAT+TGG | 0.343899 | 6_1:-91097763 | Msa0898160:CDS |
| TTCTGTTGCACTTGATCGTT+GGG | 0.380421 | 6_1:+91097837 | None:intergenic |
| ATATCTTGTATCTTCATTGC+TGG | 0.382970 | 6_1:+91099207 | None:intergenic |
| TATGACATTGTCAACTGATA+AGG | 0.397671 | 6_1:-91099346 | Msa0898160:CDS |
| AGCAATGAAGATACAAGATA+TGG | 0.413373 | 6_1:-91099205 | Msa0898160:CDS |
| TTGAGAGGACAAAACAAGAA+TGG | 0.465367 | 6_1:-91097890 | Msa0898160:intron |
| TTTCTGTTGCACTTGATCGT+TGG | 0.472693 | 6_1:+91097836 | None:intergenic |
| AGGACTTGGTTCACCAAAGC+AGG | 0.487386 | 6_1:+91097980 | None:intergenic |
| AACTCAAAAGTTCAAGTGAC+TGG | 0.487878 | 6_1:+91098005 | None:intergenic |
| TTCATTGCTGGAAGCACTCG+TGG | 0.528973 | 6_1:+91099219 | None:intergenic |
| CAGCACTAAGTGATTTGAGA+AGG | 0.554021 | 6_1:+91098062 | None:intergenic |
| AAACTGAGAATCAGCTTCGA+TGG | 0.562444 | 6_1:-91097816 | Msa0898160:CDS |
| AGCACTAAGTGATTTGAGAA+GGG | 0.562509 | 6_1:+91098063 | None:intergenic |
| GCACTAAGTGATTTGAGAAG+GGG | 0.584907 | 6_1:+91098064 | None:intergenic |
| GCTCAATACTTGAAGCATTG+AGG | 0.596101 | 6_1:-91099164 | Msa0898160:CDS |
| CATTGAGGATGTCAGAGGAG+AGG | 0.607342 | 6_1:-91099149 | Msa0898160:intron |
| TTTCTGCCATTGTGAAAACA+TGG | 0.629373 | 6_1:+91098038 | None:intergenic |
| TGTCAACTGATAAGGTTCAG+TGG | 0.649714 | 6_1:-91099338 | Msa0898160:CDS |
| TGAAGCATTGAGGATGTCAG+AGG | 0.654982 | 6_1:-91099154 | Msa0898160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAGTAATTCAGAAA+GGG | + | chr6_1:91098021-91098040 | None:intergenic | 15.0% |
| !! | AAAAAAATTTATCCTTATTG+CGG | - | chr6_1:91099117-91099136 | Msa0898160:intron | 15.0% |
| !! | ATATAAAAGTAATTCAGAAA+GGG | + | chr6_1:91098021-91098040 | None:intergenic | 15.0% |
| !! | AAAAAAATTTATCCTTATTG+CGG | - | chr6_1:91099117-91099136 | Msa0898160:intron | 15.0% |
| !! | ATTCAATTAAATCATCATCA+TGG | + | chr6_1:91097952-91097971 | None:intergenic | 20.0% |
| !! | CATATAAAAGTAATTCAGAA+AGG | + | chr6_1:91098022-91098041 | None:intergenic | 20.0% |
| !! | AGAAATGATTGAAACAATTA+TGG | + | chr6_1:91098256-91098275 | None:intergenic | 20.0% |
| !! | TTTATAACTATTATTACCGA+AGG | - | chr6_1:91098472-91098491 | Msa0898160:intron | 20.0% |
| !! | TCAAATCCATAGTAAATTTA+AGG | - | chr6_1:91098684-91098703 | Msa0898160:intron | 20.0% |
| !! | CAAATCCATAGTAAATTTAA+GGG | - | chr6_1:91098685-91098704 | Msa0898160:intron | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | - | chr6_1:91098816-91098835 | Msa0898160:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | - | chr6_1:91098817-91098836 | Msa0898160:intron | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | - | chr6_1:91098928-91098947 | Msa0898160:intron | 20.0% |
| !! | ATGGTTTAGAAGATTATAAA+AGG | - | chr6_1:91099255-91099274 | Msa0898160:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | - | chr6_1:91099278-91099297 | Msa0898160:CDS | 20.0% |
| !! | ATTCAATTAAATCATCATCA+TGG | + | chr6_1:91097952-91097971 | None:intergenic | 20.0% |
| !! | CATATAAAAGTAATTCAGAA+AGG | + | chr6_1:91098022-91098041 | None:intergenic | 20.0% |
| !! | AGAAATGATTGAAACAATTA+TGG | + | chr6_1:91098256-91098275 | None:intergenic | 20.0% |
| !! | TTTATAACTATTATTACCGA+AGG | - | chr6_1:91098472-91098491 | Msa0898160:intron | 20.0% |
| !! | TCAAATCCATAGTAAATTTA+AGG | - | chr6_1:91098684-91098703 | Msa0898160:intron | 20.0% |
| !! | CAAATCCATAGTAAATTTAA+GGG | - | chr6_1:91098685-91098704 | Msa0898160:intron | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | - | chr6_1:91098816-91098835 | Msa0898160:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | - | chr6_1:91098817-91098836 | Msa0898160:intron | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | - | chr6_1:91098928-91098947 | Msa0898160:intron | 20.0% |
| !! | ATGGTTTAGAAGATTATAAA+AGG | - | chr6_1:91099255-91099274 | Msa0898160:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | - | chr6_1:91099278-91099297 | Msa0898160:CDS | 20.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | - | chr6_1:91097734-91097753 | Msa0898160:CDS | 25.0% |
| ! | TATCAGCAAACAAGAAAAAT+GGG | + | chr6_1:91097796-91097815 | None:intergenic | 25.0% |
| ! | ATATCAGCAAACAAGAAAAA+TGG | + | chr6_1:91097797-91097816 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCTGATA+TGG | - | chr6_1:91097796-91097815 | Msa0898160:CDS | 25.0% |
| ! | ATTAAGAATTGTACTACTAG+AGG | - | chr6_1:91097992-91098011 | Msa0898160:intron | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | + | chr6_1:91098064-91098083 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTGTGATTATG+AGG | - | chr6_1:91098420-91098439 | Msa0898160:intron | 25.0% |
| ! | TCCTCATAATCACAAAAAAT+TGG | + | chr6_1:91098424-91098443 | None:intergenic | 25.0% |
| ! | TCTATTACTGAATATCTGAT+TGG | - | chr6_1:91098561-91098580 | Msa0898160:intron | 25.0% |
| !!! | ATTCAGTAATTTGTTGAACA+CGG | + | chr6_1:91098596-91098615 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | - | chr6_1:91098607-91098626 | Msa0898160:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | - | chr6_1:91098608-91098627 | Msa0898160:intron | 25.0% |
| ! | TTCTACCCTTAAATTTACTA+TGG | + | chr6_1:91098693-91098712 | None:intergenic | 25.0% |
| !!! | ATCTTATCCTTTATTTTCAG+TGG | + | chr6_1:91098802-91098821 | None:intergenic | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | + | chr6_1:91098926-91098945 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | + | chr6_1:91098927-91098946 | None:intergenic | 25.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | - | chr6_1:91097734-91097753 | Msa0898160:CDS | 25.0% |
| ! | TATCAGCAAACAAGAAAAAT+GGG | + | chr6_1:91097796-91097815 | None:intergenic | 25.0% |
| ! | ATATCAGCAAACAAGAAAAA+TGG | + | chr6_1:91097797-91097816 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCTGATA+TGG | - | chr6_1:91097796-91097815 | Msa0898160:CDS | 25.0% |
| ! | ATTAAGAATTGTACTACTAG+AGG | - | chr6_1:91097992-91098011 | Msa0898160:intron | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | + | chr6_1:91098064-91098083 | None:intergenic | 25.0% |
| !!! | ACCAATTTTTTGTGATTATG+AGG | - | chr6_1:91098420-91098439 | Msa0898160:intron | 25.0% |
| ! | TCCTCATAATCACAAAAAAT+TGG | + | chr6_1:91098424-91098443 | None:intergenic | 25.0% |
| ! | TCTATTACTGAATATCTGAT+TGG | - | chr6_1:91098561-91098580 | Msa0898160:intron | 25.0% |
| !!! | ATTCAGTAATTTGTTGAACA+CGG | + | chr6_1:91098596-91098615 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | - | chr6_1:91098607-91098626 | Msa0898160:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | - | chr6_1:91098608-91098627 | Msa0898160:intron | 25.0% |
| ! | TTCTACCCTTAAATTTACTA+TGG | + | chr6_1:91098693-91098712 | None:intergenic | 25.0% |
| !!! | ATCTTATCCTTTATTTTCAG+TGG | + | chr6_1:91098802-91098821 | None:intergenic | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | + | chr6_1:91098926-91098945 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | + | chr6_1:91098927-91098946 | None:intergenic | 25.0% |
| ATATCTTGTATCTTCATTGC+TGG | + | chr6_1:91097848-91097867 | None:intergenic | 30.0% | |
| AGCAATGAAGATACAAGATA+TGG | - | chr6_1:91097847-91097866 | Msa0898160:CDS | 30.0% | |
| TTAAATCATCATCATGGCAT+TGG | + | chr6_1:91097946-91097965 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | - | chr6_1:91098062-91098081 | Msa0898160:CDS | 30.0% |
| GACAGACAAAGAATCAATTT+CGG | + | chr6_1:91098103-91098122 | None:intergenic | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | + | chr6_1:91098147-91098166 | None:intergenic | 30.0% | |
| TACTGAATATCTGATTGGAT+TGG | - | chr6_1:91098566-91098585 | Msa0898160:intron | 30.0% | |
| !! | TTCAGTAATTTGTTGAACAC+GGG | + | chr6_1:91098595-91098614 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | - | chr6_1:91098615-91098634 | Msa0898160:intron | 30.0% | |
| TTCAGATCCACTGAAAATAA+AGG | - | chr6_1:91098792-91098811 | Msa0898160:intron | 30.0% | |
| TCTCAAATAAGTAACAACCA+AGG | + | chr6_1:91099148-91099167 | None:intergenic | 30.0% | |
| ! | TTGGTTGTTACTTATTTGAG+AGG | - | chr6_1:91099147-91099166 | Msa0898160:intron | 30.0% |
| ! | GACATATGTTGGTTATTCAT+TGG | - | chr6_1:91099289-91099308 | Msa0898160:CDS | 30.0% |
| ATATCTTGTATCTTCATTGC+TGG | + | chr6_1:91097848-91097867 | None:intergenic | 30.0% | |
| AGCAATGAAGATACAAGATA+TGG | - | chr6_1:91097847-91097866 | Msa0898160:CDS | 30.0% | |
| TTAAATCATCATCATGGCAT+TGG | + | chr6_1:91097946-91097965 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | - | chr6_1:91098062-91098081 | Msa0898160:CDS | 30.0% |
| GACAGACAAAGAATCAATTT+CGG | + | chr6_1:91098103-91098122 | None:intergenic | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | + | chr6_1:91098147-91098166 | None:intergenic | 30.0% | |
| TACTGAATATCTGATTGGAT+TGG | - | chr6_1:91098566-91098585 | Msa0898160:intron | 30.0% | |
| !! | TTCAGTAATTTGTTGAACAC+GGG | + | chr6_1:91098595-91098614 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | - | chr6_1:91098615-91098634 | Msa0898160:intron | 30.0% | |
| TTCAGATCCACTGAAAATAA+AGG | - | chr6_1:91098792-91098811 | Msa0898160:intron | 30.0% | |
| TCTCAAATAAGTAACAACCA+AGG | + | chr6_1:91099148-91099167 | None:intergenic | 30.0% | |
| ! | TTGGTTGTTACTTATTTGAG+AGG | - | chr6_1:91099147-91099166 | Msa0898160:intron | 30.0% |
| ! | GACATATGTTGGTTATTCAT+TGG | - | chr6_1:91099289-91099308 | Msa0898160:CDS | 30.0% |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | - | chr6_1:91098143-91098162 | Msa0898160:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | - | chr6_1:91098318-91098337 | Msa0898160:intron | 35.0% | |
| !! | TCAGTAATTTGTTGAACACG+GGG | + | chr6_1:91098594-91098613 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | - | chr6_1:91098616-91098635 | Msa0898160:intron | 35.0% | |
| !! | ATTTTCAGTGGATCTGAAGT+TGG | + | chr6_1:91098790-91098809 | None:intergenic | 35.0% |
| TAAGATCTAGTGAAGACTAC+AGG | - | chr6_1:91098846-91098865 | Msa0898160:intron | 35.0% | |
| AAGATCTAGTGAAGACTACA+GGG | - | chr6_1:91098847-91098866 | Msa0898160:intron | 35.0% | |
| AGCACTAAGTGATTTGAGAA+GGG | + | chr6_1:91098992-91099011 | None:intergenic | 35.0% | |
| TTTCTGCCATTGTGAAAACA+TGG | + | chr6_1:91099017-91099036 | None:intergenic | 35.0% | |
| ! | TGTTTTCACAATGGCAGAAA+TGG | - | chr6_1:91099017-91099036 | Msa0898160:intron | 35.0% |
| AACTCAAAAGTTCAAGTGAC+TGG | + | chr6_1:91099050-91099069 | None:intergenic | 35.0% | |
| !! | AGTCACTTGAACTTTTGAGT+TGG | - | chr6_1:91099049-91099068 | Msa0898160:intron | 35.0% |
| TTGAGAGGACAAAACAAGAA+TGG | - | chr6_1:91099162-91099181 | Msa0898160:CDS | 35.0% | |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | - | chr6_1:91098143-91098162 | Msa0898160:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | - | chr6_1:91098318-91098337 | Msa0898160:intron | 35.0% | |
| !! | TCAGTAATTTGTTGAACACG+GGG | + | chr6_1:91098594-91098613 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | - | chr6_1:91098616-91098635 | Msa0898160:intron | 35.0% | |
| !! | ATTTTCAGTGGATCTGAAGT+TGG | + | chr6_1:91098790-91098809 | None:intergenic | 35.0% |
| TAAGATCTAGTGAAGACTAC+AGG | - | chr6_1:91098846-91098865 | Msa0898160:intron | 35.0% | |
| AAGATCTAGTGAAGACTACA+GGG | - | chr6_1:91098847-91098866 | Msa0898160:intron | 35.0% | |
| AGCACTAAGTGATTTGAGAA+GGG | + | chr6_1:91098992-91099011 | None:intergenic | 35.0% | |
| TTTCTGCCATTGTGAAAACA+TGG | + | chr6_1:91099017-91099036 | None:intergenic | 35.0% | |
| ! | TGTTTTCACAATGGCAGAAA+TGG | - | chr6_1:91099017-91099036 | Msa0898160:intron | 35.0% |
| AACTCAAAAGTTCAAGTGAC+TGG | + | chr6_1:91099050-91099069 | None:intergenic | 35.0% | |
| !! | AGTCACTTGAACTTTTGAGT+TGG | - | chr6_1:91099049-91099068 | Msa0898160:intron | 35.0% |
| TTGAGAGGACAAAACAAGAA+TGG | - | chr6_1:91099162-91099181 | Msa0898160:CDS | 35.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | - | chr6_1:91097714-91097733 | Msa0898160:CDS | 40.0% | |
| !! | GCTCAATACTTGAAGCATTG+AGG | - | chr6_1:91097888-91097907 | Msa0898160:CDS | 40.0% |
| TCAGTTCACTTTCACTCCTT+CGG | + | chr6_1:91098491-91098510 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | + | chr6_1:91098905-91098924 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | + | chr6_1:91098940-91098959 | None:intergenic | 40.0% | |
| GCACTAAGTGATTTGAGAAG+GGG | + | chr6_1:91098991-91099010 | None:intergenic | 40.0% | |
| CAGCACTAAGTGATTTGAGA+AGG | + | chr6_1:91098993-91099012 | None:intergenic | 40.0% | |
| ! | TGCTGACCATGTTTTCACAA+TGG | - | chr6_1:91099008-91099027 | Msa0898160:intron | 40.0% |
| AGTTCACTAAAATCGTCTCC+AGG | + | chr6_1:91099095-91099114 | None:intergenic | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | + | chr6_1:91099218-91099237 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | + | chr6_1:91099219-91099238 | None:intergenic | 40.0% | |
| AAACTGAGAATCAGCTTCGA+TGG | - | chr6_1:91099236-91099255 | Msa0898160:CDS | 40.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | - | chr6_1:91097714-91097733 | Msa0898160:CDS | 40.0% | |
| !! | GCTCAATACTTGAAGCATTG+AGG | - | chr6_1:91097888-91097907 | Msa0898160:CDS | 40.0% |
| TCAGTTCACTTTCACTCCTT+CGG | + | chr6_1:91098491-91098510 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | + | chr6_1:91098905-91098924 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | + | chr6_1:91098940-91098959 | None:intergenic | 40.0% | |
| GCACTAAGTGATTTGAGAAG+GGG | + | chr6_1:91098991-91099010 | None:intergenic | 40.0% | |
| CAGCACTAAGTGATTTGAGA+AGG | + | chr6_1:91098993-91099012 | None:intergenic | 40.0% | |
| ! | TGCTGACCATGTTTTCACAA+TGG | - | chr6_1:91099008-91099027 | Msa0898160:intron | 40.0% |
| AGTTCACTAAAATCGTCTCC+AGG | + | chr6_1:91099095-91099114 | None:intergenic | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | + | chr6_1:91099218-91099237 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | + | chr6_1:91099219-91099238 | None:intergenic | 40.0% | |
| AAACTGAGAATCAGCTTCGA+TGG | - | chr6_1:91099236-91099255 | Msa0898160:CDS | 40.0% | |
| !! | TGAAGCATTGAGGATGTCAG+AGG | - | chr6_1:91097898-91097917 | Msa0898160:intron | 45.0% |
| GTTGCAGGTGTCAGTTAACT+AGG | - | chr6_1:91098158-91098177 | Msa0898160:intron | 45.0% | |
| !! | AAATTGCAGGACTAGCTAGC+TGG | - | chr6_1:91098354-91098373 | Msa0898160:intron | 45.0% |
| ATAGGGATATCGGGAATGTG+TGG | - | chr6_1:91098625-91098644 | Msa0898160:intron | 45.0% | |
| GTGAAGACTACAGGGACAAT+AGG | - | chr6_1:91098855-91098874 | Msa0898160:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | + | chr6_1:91098887-91098906 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | - | chr6_1:91098890-91098909 | Msa0898160:intron | 45.0% | |
| !!! | ACTTTTGAGTTGGCCTGCTT+TGG | - | chr6_1:91099059-91099078 | Msa0898160:intron | 45.0% |
| CTAAAATCGTCTCCAGGACT+TGG | + | chr6_1:91099089-91099108 | None:intergenic | 45.0% | |
| TCCTTATTGCGGAAAGTCCT+TGG | - | chr6_1:91099128-91099147 | Msa0898160:intron | 45.0% | |
| ACCAAGGACTTTCCGCAATA+AGG | + | chr6_1:91099132-91099151 | None:intergenic | 45.0% | |
| !! | TGAAGCATTGAGGATGTCAG+AGG | - | chr6_1:91097898-91097917 | Msa0898160:intron | 45.0% |
| GTTGCAGGTGTCAGTTAACT+AGG | - | chr6_1:91098158-91098177 | Msa0898160:intron | 45.0% | |
| !! | AAATTGCAGGACTAGCTAGC+TGG | - | chr6_1:91098354-91098373 | Msa0898160:intron | 45.0% |
| ATAGGGATATCGGGAATGTG+TGG | - | chr6_1:91098625-91098644 | Msa0898160:intron | 45.0% | |
| GTGAAGACTACAGGGACAAT+AGG | - | chr6_1:91098855-91098874 | Msa0898160:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | + | chr6_1:91098887-91098906 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | - | chr6_1:91098890-91098909 | Msa0898160:intron | 45.0% | |
| !!! | ACTTTTGAGTTGGCCTGCTT+TGG | - | chr6_1:91099059-91099078 | Msa0898160:intron | 45.0% |
| CTAAAATCGTCTCCAGGACT+TGG | + | chr6_1:91099089-91099108 | None:intergenic | 45.0% | |
| TCCTTATTGCGGAAAGTCCT+TGG | - | chr6_1:91099128-91099147 | Msa0898160:intron | 45.0% | |
| ACCAAGGACTTTCCGCAATA+AGG | + | chr6_1:91099132-91099151 | None:intergenic | 45.0% | |
| !!! | ATTTAATTGAATTTTATAAA+AGG | - | chr6_1:91097960-91097979 | Msa0898160:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTGTA+TGG | - | chr6_1:91098208-91098227 | Msa0898160:intron | 5.0% |
| !! | ATAATAAATAATAATAGTAA+AGG | - | chr6_1:91098746-91098765 | Msa0898160:intron | 5.0% |
| !! | TAATAAATAATAATAGTAAA+GGG | - | chr6_1:91098747-91098766 | Msa0898160:intron | 5.0% |
| !!! | ATTTAATTGAATTTTATAAA+AGG | - | chr6_1:91097960-91097979 | Msa0898160:intron | 5.0% |
| !!! | TTATTTTATTTTATTTTGTA+TGG | - | chr6_1:91098208-91098227 | Msa0898160:intron | 5.0% |
| !! | ATAATAAATAATAATAGTAA+AGG | - | chr6_1:91098746-91098765 | Msa0898160:intron | 5.0% |
| !! | TAATAAATAATAATAGTAAA+GGG | - | chr6_1:91098747-91098766 | Msa0898160:intron | 5.0% |
| !! | TTCATTGCTGGAAGCACTCG+TGG | + | chr6_1:91097836-91097855 | None:intergenic | 50.0% |
| CATTGAGGATGTCAGAGGAG+AGG | - | chr6_1:91097903-91097922 | Msa0898160:intron | 50.0% | |
| GCTGGTATACTCGCAGTTTC+AGG | - | chr6_1:91098372-91098391 | Msa0898160:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | - | chr6_1:91098632-91098651 | Msa0898160:intron | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | - | chr6_1:91098889-91098908 | Msa0898160:intron | 50.0% | |
| ! | AGGACTTGGTTCACCAAAGC+AGG | + | chr6_1:91099075-91099094 | None:intergenic | 50.0% |
| TGCTTTGGTGAACCAAGTCC+TGG | - | chr6_1:91099074-91099093 | Msa0898160:intron | 50.0% | |
| !! | TTCATTGCTGGAAGCACTCG+TGG | + | chr6_1:91097836-91097855 | None:intergenic | 50.0% |
| CATTGAGGATGTCAGAGGAG+AGG | - | chr6_1:91097903-91097922 | Msa0898160:intron | 50.0% | |
| GCTGGTATACTCGCAGTTTC+AGG | - | chr6_1:91098372-91098391 | Msa0898160:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | - | chr6_1:91098632-91098651 | Msa0898160:intron | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | - | chr6_1:91098889-91098908 | Msa0898160:intron | 50.0% | |
| ! | AGGACTTGGTTCACCAAAGC+AGG | + | chr6_1:91099075-91099094 | None:intergenic | 50.0% |
| TGCTTTGGTGAACCAAGTCC+TGG | - | chr6_1:91099074-91099093 | Msa0898160:intron | 50.0% | |
| ! | TGCGAGTGCGCTCCTCATTT+TGG | + | chr6_1:91098333-91098352 | None:intergenic | 55.0% |
| AGCGCACTCGCAGAAATTGC+AGG | - | chr6_1:91098341-91098360 | Msa0898160:intron | 55.0% | |
| ! | TGCGAGTGCGCTCCTCATTT+TGG | + | chr6_1:91098333-91098352 | None:intergenic | 55.0% |
| AGCGCACTCGCAGAAATTGC+AGG | - | chr6_1:91098341-91098360 | Msa0898160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 91097707 | 91099367 | 91097707 | ID=Msa0898160;Name=Msa0898160 |
| chr6_1 | mRNA | 91097707 | 91099367 | 91097707 | ID=Msa0898160-mRNA-1;Parent=Msa0898160;Name=Msa0898160-mRNA-1;_AED=0.10;_eAED=0.26;_QI=0|0|0|1|0|0.33|3|0|172 |
| chr6_1 | exon | 91099150 | 91099367 | 91099150 | ID=Msa0898160-mRNA-1:exon:15503;Parent=Msa0898160-mRNA-1 |
| chr6_1 | exon | 91097994 | 91098093 | 91097994 | ID=Msa0898160-mRNA-1:exon:15502;Parent=Msa0898160-mRNA-1 |
| chr6_1 | exon | 91097707 | 91097907 | 91097707 | ID=Msa0898160-mRNA-1:exon:15501;Parent=Msa0898160-mRNA-1 |
| chr6_1 | CDS | 91099150 | 91099367 | 91099150 | ID=Msa0898160-mRNA-1:cds;Parent=Msa0898160-mRNA-1 |
| chr6_1 | CDS | 91097994 | 91098093 | 91097994 | ID=Msa0898160-mRNA-1:cds;Parent=Msa0898160-mRNA-1 |
| chr6_1 | CDS | 91097707 | 91097907 | 91097707 | ID=Msa0898160-mRNA-1:cds;Parent=Msa0898160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
