AlfalfaGEDB | Msa0898470

M. sativa cultivar zhongmu-4 / Msa0898470

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898470	MCH80068.1	46.870	623	300	13	11	627	11	608	2.82e-177	529

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898470	sp\|P0C5E2\|LRL12_ARATH	34.755	633	364	14	16	627	13	617	1.33e-116	365

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898470	A0A1S2Z0M2	47.536	690	289	11	3	627	8	689	0.0	587

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898470	MtrunA17_Chr6g0483931	39.248	665	344	18	1	626	1	644	1.02e-124	384
Msa0898470	MtrunA17_Chr6g0483791	39.323	679	308	26	5	624	10	643	1.68e-123	380
Msa0898470	MtrunA17_Chr6g0483851	37.000	700	342	20	2	624	8	685	8.38e-123	380
Msa0898470	MtrunA17_Chr6g0467631	37.727	660	337	16	10	629	3	628	2.15e-122	377
Msa0898470	MtrunA17_Chr6g0467601	46.118	425	220	5	210	629	12	432	1.82e-112	345
Msa0898470	MtrunA17_Chr8g0376061	37.336	608	343	16	34	627	29	612	1.61e-109	343
Msa0898470	MtrunA17_Chr1g0209361	36.364	616	345	15	29	627	34	619	1.95e-104	331
Msa0898470	MtrunA17_Chr7g0251121	34.488	664	359	21	10	626	8	642	2.11e-101	323
Msa0898470	MtrunA17_Chr5g0423061	43.750	400	196	9	247	626	198	588	1.55e-95	306
Msa0898470	MtrunA17_Chr1g0209431	45.797	345	174	3	288	626	276	613	5.15e-91	295

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898470	AT5G38210.3	35.725	655	352	19	17	628	1	629	1.56e-121	376
Msa0898470	AT5G38210.2	35.562	658	355	19	14	628	16	647	2.47e-121	376
Msa0898470	AT1G18390.2	34.434	636	365	15	16	627	13	620	1.21e-115	360
Msa0898470	AT1G18390.1	36.071	621	346	17	29	627	23	614	3.51e-114	356
Msa0898470	AT1G66880.2	35.093	644	342	16	32	626	247	863	3.10e-109	350
Msa0898470	AT5G38210.1	34.656	655	360	21	10	628	13	635	4.36e-109	343
Msa0898470	AT1G66880.3	36.911	615	334	16	38	626	35	621	1.68e-108	342
Msa0898470	AT1G66880.1	35.429	652	337	17	28	626	622	1242	4.23e-106	348
Msa0898470	AT1G25390.1	48.973	292	146	2	337	627	279	568	3.59e-88	287
Msa0898470	AT1G25390.2	48.973	292	146	2	337	627	279	568	3.59e-88	287

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Find 134 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTCTACAGCTT+TGG	0.398933	6_1:+92517462	Msa0898470:CDS
AAAATGAAGTTAGCAAGCTC+AGG	0.435226	6_1:+92517049	Msa0898470:CDS
AAACATAACATATCAGTTCC+TGG	0.445697	6_1:+92515919	Msa0898470:CDS
AAAGGAGAAGAGTCTGGATC+TGG	0.451510	6_1:-92515790	None:intergenic
AAATGAAGTTAGCAAGCTCA+GGG	0.632109	6_1:+92517050	Msa0898470:CDS
AACGTGCTTATGATGAGCAC+AGG	0.573167	6_1:+92517514	Msa0898470:CDS
AACTAATTGTTGCAGGAGGA+TGG	0.506979	6_1:+92516268	Msa0898470:intron
AAGAAGCAGGAGGAAGAGAA+AGG	0.452533	6_1:-92515377	None:intergenic
AAGACCCAACCTAATTATTG+TGG	0.570655	6_1:+92515511	Msa0898470:CDS
AATCAAACCTGCTAGGAGAA+GGG	0.588256	6_1:+92516637	Msa0898470:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGATTAAGAAAAGAAGC+AGG	-	chr6_1:92515393-92515412	None:intergenic	30.0%
TTAACATCGGTATAATGCAA+GGG	-	chr6_1:92515697-92515716	None:intergenic	30.0%
ATTAACATCGGTATAATGCA+AGG	-	chr6_1:92515698-92515717	None:intergenic	30.0%
AAACATAACATATCAGTTCC+TGG	+	chr6_1:92515919-92515938	Msa0898470:CDS	30.0%
TAGCCAGTTTAATACTATAG+AGG	+	chr6_1:92515960-92515979	Msa0898470:CDS	30.0%
CTTCCTCTATAGTATTAAAC+TGG	-	chr6_1:92515966-92515985	None:intergenic	30.0%
CAGTTTAATACTATAGAGGA+AGG	+	chr6_1:92515964-92515983	Msa0898470:CDS	30.0%
CTATAATGTATCTTCGAATG+AGG	+	chr6_1:92516059-92516078	Msa0898470:CDS	30.0%
ACTGCAATATGAACTTCATT+AGG	-	chr6_1:92516979-92516998	None:intergenic	30.0%
TTTATCATTTCATGTGCCAT+TGG	-	chr6_1:92517639-92517658	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	92515346	92517761	92515346	ID=Msa0898470;Name=Msa0898470
chr6_1	mRNA	92515346	92517761	92515346	ID=Msa0898470-mRNA-1;Parent=Msa0898470;Name=Msa0898470-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|4\|0\|629
chr6_1	exon	92515346	92516141	92515346	ID=Msa0898470-mRNA-1:exon:15613;Parent=Msa0898470-mRNA-1
chr6_1	exon	92516283	92516315	92516283	ID=Msa0898470-mRNA-1:exon:15614;Parent=Msa0898470-mRNA-1
chr6_1	exon	92516415	92516681	92516415	ID=Msa0898470-mRNA-1:exon:15615;Parent=Msa0898470-mRNA-1
chr6_1	exon	92516968	92517761	92516968	ID=Msa0898470-mRNA-1:exon:15616;Parent=Msa0898470-mRNA-1
chr6_1	CDS	92515346	92516141	92515346	ID=Msa0898470-mRNA-1:cds;Parent=Msa0898470-mRNA-1
chr6_1	CDS	92516283	92516315	92516283	ID=Msa0898470-mRNA-1:cds;Parent=Msa0898470-mRNA-1
chr6_1	CDS	92516415	92516681	92516415	ID=Msa0898470-mRNA-1:cds;Parent=Msa0898470-mRNA-1
chr6_1	CDS	92516968	92517761	92516968	ID=Msa0898470-mRNA-1:cds;Parent=Msa0898470-mRNA-1

Gene Sequence

>Msa0898470

ATGTCTCCACATTTTTCTTTCACCATCAACTCCTTTCTCTTCCTCCTGCTTCTTTTCTTAATCCAAATCCAAACACACGCCGTTACGGCAGATGAAATGTACACATCTTGTGCACCTTTCAGCTGCGGTAACTTCACATCTCTTTCATATCCGTTTTGGAGTTCAAAGACCCAACCTAATTATTGTGGTCACCCAAAGTTCAAGGTTGATTGCCATCATGGCATCTTGACTTTGGACATGATTTCACAAAGGTTTAAAATCATTTCCATAAACCAAACATCCCAATTGTTAAGGATTGCAAGGACATATTTATATGATGATGCTGCTATGGCTACACTTGATTCTTGTCCCTTGCATTATACCGATGTTAATGTGGATTTAGATTTTTTCCATTACACTTCCAATGATGAAAACTATACTCTATTGTATGAGTGTAGTGAGCTTCCAGATCCAGACTCTTCTCCTTTGATTTCAGAAATTTCTGAATTTACCGGATGCCTCATTGATGGTAAACGTCAAACATCATACCTAGTATTGAAAAATAGAGCAGTAGATTTTAATGTTCTAGGTTGCAAACATAACATATCAGTTCCTGGATTGAAAACATCGCTCACTAGCCAGTTTAATACTATAGAGGAAGGTTTTGAGGTTAGGTGGAGTGGTGTGGATGAGGAAAAGAAGTGTCATGGTTGCATGAAATATGGTAGATGTGGCTATAATGTATCTTCGAATGAGGTTATCTGTCTATCTTCTCAGAAATCTGCGACACCATCACCACAAATAGCACGAACACATGGAGGATGGAATTCAAAGACAAAAATCATTCTTGGTGTTGTTTGTGGTGTGTTATCAACACTTATTGTGATCACAGCCGGGTATTTATGTTGGCGTCACGACACTTGTAGTTCTGCAGAGCTTGATCCAGAGTCTCTTAACCACTCTTCTCAACCATCTACTCAAGAAACACAGAGACTTGGAACAGCTGATAACTTTGGTGGAGTTCATCATTTCACTTTTAACGATCTTCGATGGTGCACAAGAAACTTCCACCAATCAAACCTGCTAGGAGAAGGGACTTTTGGGAAAGTATATCATGGTAAACTGCCTAATGAAGTTCATATTGCAGTGAAGAAGCTTAAGCGTCGTGATCTCAGCTCCAACCCATATTATATGTTTGAAAATGAAGTTAGCAAGCTCAGGGACCTTCAACATCCAAATATTGTTAAGTTATTAGGGTGCACCTCACGCCAAGGCCGCAGTAACATGCTTGTCTACGAGTATGTATCTAATGGAACTGTGGCTGATCACCTTCATGGCAACAAGGCACAAGAGGGCAGATTAACTTGGATGGTAAGGATGAATATTGCAGTGGAGACTGCCAGGGCACTGGAGCATCTTCATGCCTCAAAAGTAGTCCATAGAGATATAAAGAGCAGCAATATTCTTCTTGACGCCAACTTTCATGCAATAGTTGGAGATTTTGGACTCGCCCGCCATTTTCCGAGGGATCAAAGCCATGTTCAAACAAGGGCAAAAGGGACTCCAGGTTATATAGATCCTGAGTACGTTCGGAGCCATCACCTTACTCTTAAAAGTGATGTCTACAGCTTTGGAGTATTCATGTTTGAGTTGATTACATCAAAACGTGCTTATGATGAGCACAGGTCCAGGGATAGTATCAAATTGGCCTTCATGGCTTTGAAGAGAAAATCAAATCAAACCTTTTCTGAACTTGTGGATAGTAACCTCGGTTTTCATGCAGATCCAATGGCACATGAAATGATAAATCAGGTTGCTAACTTAGCTTTTCAATGTGTTTCTCAGGAGCCAAATATGAGACCTACCATGGCTGAGGTGTTGCTTGCATTAGAGCATATTCATAGGGCATAA

Protein sequence

>Msa0898470

MSPHFSFTINSFLFLLLLFLIQIQTHAVTADEMYTSCAPFSCGNFTSLSYPFWSSKTQPNYCGHPKFKVDCHHGILTLDMISQRFKIISINQTSQLLRIARTYLYDDAAMATLDSCPLHYTDVNVDLDFFHYTSNDENYTLLYECSELPDPDSSPLISEISEFTGCLIDGKRQTSYLVLKNRAVDFNVLGCKHNISVPGLKTSLTSQFNTIEEGFEVRWSGVDEEKKCHGCMKYGRCGYNVSSNEVICLSSQKSATPSPQIARTHGGWNSKTKIILGVVCGVLSTLIVITAGYLCWRHDTCSSAELDPESLNHSSQPSTQETQRLGTADNFGGVHHFTFNDLRWCTRNFHQSNLLGEGTFGKVYHGKLPNEVHIAVKKLKRRDLSSNPYYMFENEVSKLRDLQHPNIVKLLGCTSRQGRSNMLVYEYVSNGTVADHLHGNKAQEGRLTWMVRMNIAVETARALEHLHASKVVHRDIKSSNILLDANFHAIVGDFGLARHFPRDQSHVQTRAKGTPGYIDPEYVRSHHLTLKSDVYSFGVFMFELITSKRAYDEHRSRDSIKLAFMALKRKSNQTFSELVDSNLGFHADPMAHEMINQVANLAFQCVSQEPNMRPTMAEVLLALEHIHRA*