AlfalfaGEDB | Msa0898630

M. sativa cultivar zhongmu-4 / Msa0898630

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	XP_024641461.2	97.091	275	5	1	1	275	1	272	0.0	560

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	sp\|Q8GWK7\|BEE3_ARATH	50.775	258	86	10	38	275	25	261	2.60e-63	202

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	A0A396HHQ6	97.091	275	5	1	1	275	1	272	0.0	560

TFs/TRs:

Gene ID	Type	Classification
Msa0898630	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	MtrunA17_Chr6g0484271	97.091	275	5	1	1	275	1	272	0.0	560
Msa0898630	MtrunA17_Chr7g0234761	60.909	110	43	0	129	238	288	397	3.44e-37	137
Msa0898630	MtrunA17_Chr8g0339091	62.136	103	39	0	136	238	269	371	1.31e-35	133
Msa0898630	MtrunA17_Chr5g0415291	55.963	109	41	1	129	230	76	184	1.29e-34	125
Msa0898630	MtrunA17_Chr3g0131771	64.894	94	32	1	149	241	138	231	2.10e-34	127
Msa0898630	MtrunA17_Chr8g0365941	58.559	111	44	1	127	237	276	384	8.33e-34	127
Msa0898630	MtrunA17_Chr5g0421111	59.633	109	42	1	130	238	339	445	1.23e-33	128
Msa0898630	MtrunA17_Chr3g0144641	45.752	153	70	2	100	241	122	272	2.20e-33	125
Msa0898630	MtrunA17_Chr4g0035101	71.951	82	23	0	154	235	139	220	2.22e-33	124
Msa0898630	MtrunA17_Chr8g0363921	41.146	192	70	6	92	244	60	247	2.57e-33	122
Msa0898630	MtrunA17_Chr8g0385911	62.766	94	34	1	149	241	136	229	4.96e-33	123
Msa0898630	MtrunA17_Chr1g0152131	60.000	100	39	1	139	237	240	339	2.51e-32	123
Msa0898630	MtrunA17_Chr1g0174161	67.500	80	26	0	156	235	158	237	3.34e-31	118
Msa0898630	MtrunA17_Chr7g0258161	67.500	80	26	0	156	235	171	250	1.75e-30	116
Msa0898630	MtrunA17_Chr4g0074161	62.121	66	24	1	158	223	206	270	1.91e-17	81.6
Msa0898630	MtrunA17_Chr1g0190731	59.091	66	26	1	158	223	193	257	1.39e-16	78.6
Msa0898630	MtrunA17_Chr1g0182791	45.570	79	42	1	145	223	304	381	2.92e-14	72.4
Msa0898630	MtrunA17_Chr1g0153241	44.304	79	43	1	146	224	73	150	2.25e-13	68.6
Msa0898630	MtrunA17_Chr5g0393721	43.529	85	47	1	138	222	204	287	2.39e-13	68.9
Msa0898630	MtrunA17_Chr4g0014771	49.231	65	33	0	158	222	118	182	5.53e-13	66.2
Msa0898630	MtrunA17_Chr1g0152651	50.769	65	31	1	158	222	274	337	9.66e-13	67.4
Msa0898630	MtrunA17_Chr4g0032951	49.231	65	33	0	158	222	355	419	1.07e-12	67.8
Msa0898630	MtrunA17_Chr3g0134741	44.318	88	44	2	135	222	210	292	3.37e-12	65.5
Msa0898630	MtrunA17_Chr1g0184841	57.576	66	27	1	158	223	120	184	4.29e-12	65.1
Msa0898630	MtrunA17_Chr1g0193321	45.312	64	34	1	160	223	464	526	2.27e-11	63.9
Msa0898630	MtrunA17_Chr7g0258181	46.269	67	36	0	158	224	243	309	2.28e-11	63.2
Msa0898630	MtrunA17_Chr7g0262691	43.038	79	43	2	145	223	240	316	4.72e-11	62.8
Msa0898630	MtrunA17_Chr3g0095391	35.345	116	54	3	106	221	277	371	5.68e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	AT1G73830.1	50.775	258	86	10	38	275	25	261	2.65e-64	202
Msa0898630	AT1G73830.2	50.775	258	85	11	38	275	25	260	3.37e-62	197
Msa0898630	AT1G18400.1	78.704	108	23	0	155	262	142	249	3.99e-59	189
Msa0898630	AT1G18400.2	84.615	91	14	0	155	245	142	232	6.05e-53	172
Msa0898630	AT1G25330.1	64.407	118	41	1	148	264	94	211	4.04e-47	157
Msa0898630	AT5G50915.3	62.264	106	39	1	137	241	115	220	9.80e-39	137
Msa0898630	AT5G50915.4	62.264	106	39	1	137	241	115	220	9.80e-39	137
Msa0898630	AT5G50915.1	62.264	106	39	1	137	241	115	220	1.62e-38	137
Msa0898630	AT5G50915.2	62.264	106	39	1	137	241	115	220	1.62e-38	137
Msa0898630	AT3G07340.1	55.147	136	50	2	106	235	205	335	6.87e-37	136
Msa0898630	AT3G07340.2	58.197	122	45	1	120	235	214	335	9.25e-37	135
Msa0898630	AT5G48560.2	70.115	87	25	1	150	235	293	379	2.63e-34	129
Msa0898630	AT5G48560.1	70.115	87	25	1	150	235	293	379	3.83e-34	129
Msa0898630	AT1G26260.3	69.880	83	25	0	156	238	170	252	8.32e-34	125
Msa0898630	AT1G26260.5	69.880	83	25	0	156	238	199	281	2.08e-33	125
Msa0898630	AT1G26260.4	69.880	83	25	0	156	238	221	303	2.36e-33	125
Msa0898630	AT1G26260.1	69.880	83	25	0	156	238	221	303	2.36e-33	125
Msa0898630	AT1G26260.6	69.880	83	25	0	156	238	221	303	2.36e-33	125
Msa0898630	AT1G26260.2	69.880	83	25	0	156	238	221	303	2.36e-33	125
Msa0898630	AT1G68920.3	71.951	82	23	0	156	237	300	381	3.51e-33	126
Msa0898630	AT1G68920.1	71.951	82	23	0	156	237	301	382	3.51e-33	126
Msa0898630	AT1G68920.4	71.951	82	23	0	156	237	301	382	3.51e-33	126
Msa0898630	AT1G68920.2	71.951	82	23	0	156	237	301	382	3.51e-33	126
Msa0898630	AT3G23690.1	65.517	87	30	0	150	236	183	269	3.99e-33	124
Msa0898630	AT1G59640.1	64.444	90	27	1	146	230	119	208	4.45e-33	122
Msa0898630	AT4G34530.1	62.105	95	34	1	147	241	161	253	3.03e-32	121
Msa0898630	AT4G36540.2	61.386	101	36	2	146	245	128	226	5.49e-32	120
Msa0898630	AT4G36540.1	61.386	101	36	2	146	245	128	226	5.78e-32	120
Msa0898630	AT1G59640.2	64.444	90	27	1	146	230	119	208	1.03e-31	120
Msa0898630	AT3G57800.2	63.736	91	33	0	148	238	194	284	1.10e-31	120
Msa0898630	AT5G62610.2	69.737	76	23	0	150	225	145	220	1.72e-31	118
Msa0898630	AT5G62610.1	69.737	76	23	0	150	225	145	220	1.72e-31	118
Msa0898630	AT1G10120.2	59.596	99	38	1	143	241	191	287	3.06e-31	119
Msa0898630	AT1G10120.1	59.596	99	38	1	143	241	191	287	3.06e-31	119
Msa0898630	AT2G42300.4	66.250	80	27	0	156	235	183	262	1.69e-30	115
Msa0898630	AT2G42300.1	49.593	123	52	3	156	273	183	300	5.86e-30	115
Msa0898630	AT2G18300.2	55.455	110	41	1	126	227	145	254	2.11e-29	114
Msa0898630	AT2G18300.1	55.455	110	41	1	126	227	145	254	2.15e-29	114
Msa0898630	AT2G18300.3	50.746	134	55	3	98	227	128	254	4.14e-29	114
Msa0898630	AT3G57800.1	42.029	138	33	1	148	238	194	331	6.08e-23	97.8
Msa0898630	AT2G24260.2	54.321	81	35	2	158	237	35	114	1.27e-17	80.5
Msa0898630	AT4G30980.1	62.121	66	24	1	158	223	130	194	2.50e-17	80.5
Msa0898630	AT4G30980.2	62.121	66	24	1	158	223	178	242	3.07e-17	80.9
Msa0898630	AT2G24260.1	54.321	81	35	2	158	237	138	217	4.66e-17	80.5
Msa0898630	AT5G58010.1	54.545	77	34	1	147	223	88	163	5.47e-17	79.3
Msa0898630	AT2G42300.5	75.610	41	10	0	156	196	183	223	4.01e-14	70.5
Msa0898630	AT2G42300.3	75.610	41	10	0	156	196	183	223	4.01e-14	70.5
Msa0898630	AT2G42300.2	75.610	41	10	0	156	196	183	223	5.36e-14	70.1
Msa0898630	AT1G09530.3	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT1G09530.2	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT1G09530.5	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT1G09530.1	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT1G09530.4	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT1G09530.6	36.552	145	77	5	98	232	267	406	2.01e-13	70.5
Msa0898630	AT2G20180.7	42.857	77	43	1	147	223	196	271	3.39e-13	69.3
Msa0898630	AT2G20180.1	42.857	77	43	1	147	223	196	271	3.39e-13	69.3
Msa0898630	AT2G20180.5	42.857	77	43	1	147	223	196	271	3.39e-13	69.3
Msa0898630	AT2G20180.4	42.857	77	43	1	147	223	267	342	3.51e-13	69.7
Msa0898630	AT2G20180.6	42.857	77	43	1	147	223	267	342	3.51e-13	69.7
Msa0898630	AT2G20180.2	42.857	77	43	1	147	223	267	342	3.51e-13	69.7
Msa0898630	AT2G20180.3	42.857	77	43	1	147	223	267	342	3.51e-13	69.7
Msa0898630	AT1G27740.1	32.258	155	81	5	91	222	77	230	6.69e-13	67.4
Msa0898630	AT4G33880.1	40.496	121	63	4	106	222	214	329	1.36e-12	67.4
Msa0898630	AT2G46970.1	40.964	83	43	2	146	223	206	287	2.22e-12	67.0
Msa0898630	AT2G46970.3	40.964	83	43	2	146	223	184	265	2.89e-12	66.6
Msa0898630	AT2G46970.2	40.964	83	43	2	146	223	175	256	2.95e-12	66.6
Msa0898630	AT2G20180.8	43.243	74	41	1	147	220	267	339	3.69e-12	66.2
Msa0898630	AT1G03040.2	49.383	81	39	2	158	237	139	218	9.02e-12	64.7
Msa0898630	AT1G03040.1	49.383	81	39	2	158	237	144	223	1.06e-11	64.3
Msa0898630	AT4G02590.3	56.061	66	28	1	158	223	83	147	1.98e-11	63.2
Msa0898630	AT1G03040.3	49.383	81	39	2	158	237	144	223	2.03e-11	63.9
Msa0898630	AT4G00050.2	45.333	75	40	1	148	222	95	168	2.22e-11	63.5
Msa0898630	AT4G02590.2	56.061	66	28	1	158	223	146	210	2.46e-11	63.5
Msa0898630	AT4G02590.1	56.061	66	28	1	158	223	146	210	2.46e-11	63.5
Msa0898630	AT1G35460.1	44.776	67	37	0	156	222	179	245	2.74e-11	62.8
Msa0898630	AT4G09180.1	45.455	66	36	0	157	222	183	248	3.10e-11	62.8
Msa0898630	AT4G28790.1	33.981	103	65	2	123	223	234	335	4.06e-11	63.2
Msa0898630	AT4G28800.1	31.783	129	72	4	101	222	193	312	4.09e-11	63.2
Msa0898630	AT4G00050.1	45.333	75	40	1	148	222	197	270	4.83e-11	63.2
Msa0898630	AT4G28815.2	36.585	82	47	2	161	238	71	151	4.85e-11	61.6
Msa0898630	AT4G00050.3	45.333	75	40	1	148	222	197	270	5.71e-11	62.8
Msa0898630	AT2G43140.1	48.485	66	34	0	156	221	132	197	7.32e-11	60.8

Find 45 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCCACTTTGACTTCAATTT+TGG	0.136033	6_1:+93075062	Msa0898630:exon
TAAACTTTGTAGAAAGTAAA+AGG	0.223600	6_1:-93075133	None:intergenic
AAATTCTCTTCCAAGTTTCT+TGG	0.225496	6_1:-93073190	None:intergenic
GTAGAAGAAATTTACAAGTT+TGG	0.242755	6_1:-93073392	None:intergenic
TATTGTTCCAGGATGTTATA+AGG	0.296431	6_1:+93074058	Msa0898630:CDS
AAGATGTTGTCACAAGAAAA+TGG	0.334761	6_1:-93073130	None:intergenic
TAATGTCCACTTGTGCTTGT+AGG	0.352567	6_1:-93075185	None:intergenic
TGCTTGCAAAATATTGTTCC+AGG	0.400546	6_1:+93074047	Msa0898630:CDS
ACTCCTGCAGTTTCTGAAAG+TGG	0.440216	6_1:+93073361	Msa0898630:CDS
GGAACTATTGAATCAATTCA+TGG	0.446503	6_1:+93073072	Msa0898630:CDS
ACATGTGTTTCCAAGAAACT+TGG	0.456545	6_1:+93073180	Msa0898630:CDS
CTTCCACTTTCAGAAACTGC+AGG	0.466079	6_1:-93073364	None:intergenic
TTGCTTGCTTTCAACCAACT+TGG	0.490280	6_1:+93075041	Msa0898630:CDS
TAGCAAGGTATAAGAGAGAA+GGG	0.498236	6_1:+93075008	Msa0898630:CDS
GAAAATAAAGTTCATCATGA+AGG	0.498927	6_1:+93073289	Msa0898630:CDS
TTGATTTGTGGCAGAGAGCA+AGG	0.504432	6_1:+93074966	Msa0898630:intron
TTTCAATGGTTGCAGACCAT+GGG	0.515237	6_1:+93074170	Msa0898630:intron
AGGTATAAGAGAGAAGGGTA+TGG	0.517402	6_1:+93075013	Msa0898630:CDS
AGAATCAAGAAAAGGAAAAG+AGG	0.517457	6_1:-93073038	None:intergenic
TTAGCAAGGTATAAGAGAGA+AGG	0.520461	6_1:+93075007	Msa0898630:CDS
TGAAGTCAAAGTGGCCAAGT+TGG	0.520695	6_1:-93075055	None:intergenic
TAATTTCAGAGTGGTGGAAG+AGG	0.521842	6_1:+93073497	Msa0898630:intron
TATGATTAATTTCAGAGTGG+TGG	0.522541	6_1:+93073491	Msa0898630:intron
CTTTGATCAGAATCAAGAAA+AGG	0.523599	6_1:-93073046	None:intergenic
GACTGTGACTATCAGTAGCT+TGG	0.523846	6_1:-93073592	None:intergenic
TAGTCACAGTCTAGCAGAAA+GGG	0.525871	6_1:+93073604	Msa0898630:CDS
TATAAGAGAGAAGGGTATGG+AGG	0.527385	6_1:+93075016	Msa0898630:CDS
CATGGGAATGGCAGTAATGT+TGG	0.527745	6_1:+93074187	Msa0898630:CDS
TCTTGATTCTGATCAAAGCA+TGG	0.528750	6_1:+93073051	Msa0898630:CDS
ATATTAACCTTATAACATCC+TGG	0.539111	6_1:-93074065	None:intergenic
TTGTTGTTCAGGTTAGAAGA+GGG	0.558240	6_1:+93074003	Msa0898630:intron
ATAGTCACAGTCTAGCAGAA+AGG	0.561228	6_1:+93073603	Msa0898630:CDS
ATCCAAAATTGAAGTCAAAG+TGG	0.565182	6_1:-93075064	None:intergenic
GCAGAGAGCAAGGGCATCTG+AGG	0.566936	6_1:+93074976	Msa0898630:intron
TGATTTGTGGCAGAGAGCAA+GGG	0.569667	6_1:+93074967	Msa0898630:intron
GAATCAAGAAAAGGAAAAGA+GGG	0.581709	6_1:-93073037	None:intergenic
ATGCTACCTACAAGCACAAG+TGG	0.585163	6_1:+93075179	Msa0898630:three_prime_UTR
TTTGTTGTTCAGGTTAGAAG+AGG	0.588572	6_1:+93074002	Msa0898630:intron
ATGGTTGCAGACCATGGGAA+TGG	0.592994	6_1:+93074175	Msa0898630:intron
GTTCATGTTAGAGCAAGAAG+AGG	0.594328	6_1:+93073569	Msa0898630:CDS
CTGAGGCAAAAGAGTTAGCA+AGG	0.595828	6_1:+93074993	Msa0898630:CDS
AACAGAAGAAGAGAAAGCAA+AGG	0.600831	6_1:+93073541	Msa0898630:CDS
CAACATTACTGCCATTCCCA+TGG	0.603267	6_1:-93074186	None:intergenic
TGCTTGTAGGTAGCATAGAG+TGG	0.610971	6_1:-93075172	None:intergenic
AGATGATCTAGAAACAATGC+AGG	0.618754	6_1:+93074447	Msa0898630:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATATTTTTTTAAATTAAAA+AGG	-	chr6_1:93074096-93074115	None:intergenic	0.0%
!!!	TATATTTTTTTAAATTAAAA+AGG	-	chr6_1:93074096-93074115	None:intergenic	0.0%
!!!	TAAACTATTTCTATAATAAA+TGG	+	chr6_1:93073696-93073715	Msa0898630:intron	10.0%
!!!	GTTAATTTTTTTTAAAAGAA+AGG	+	chr6_1:93074712-93074731	Msa0898630:intron	10.0%
!!!	TTATTTATTTATTTGATTTG+TGG	+	chr6_1:93074954-93074973	Msa0898630:intron	10.0%
!!	AAAAATATATAATAACATGT+AGG	-	chr6_1:93075262-93075281	None:intergenic	10.0%
!!!	TAAACTATTTCTATAATAAA+TGG	+	chr6_1:93073696-93073715	Msa0898630:intron	10.0%
!!!	GTTAATTTTTTTTAAAAGAA+AGG	+	chr6_1:93074712-93074731	Msa0898630:intron	10.0%
!!!	TTATTTATTTATTTGATTTG+TGG	+	chr6_1:93074954-93074973	Msa0898630:intron	10.0%
!!	AAAAATATATAATAACATGT+AGG	-	chr6_1:93075262-93075281	None:intergenic	10.0%
!!	TTAGAAAAAAAAAATACACA+TGG	+	chr6_1:93072979-93072998	Msa0898630:exon	15.0%
!!	GATGAAATTAAATTATTAAC+TGG	+	chr6_1:93073454-93073473	Msa0898630:intron	15.0%
!!!	AATCAAATTGGTTTTATATA+AGG	+	chr6_1:93073727-93073746	Msa0898630:intron	15.0%
!!!	TTATTTTGTTTTTGTTTCAA+TGG	+	chr6_1:93074156-93074175	Msa0898630:intron	15.0%
!!!	AGTAATATTCATTTATTTCT+AGG	+	chr6_1:93074257-93074276	Msa0898630:intron	15.0%
!!!	CACTAATTATAATTTTTTTG+AGG	-	chr6_1:93074326-93074345	None:intergenic	15.0%
!!	TATTAATGTCAATTTATGTT+TGG	+	chr6_1:93074356-93074375	Msa0898630:intron	15.0%
!!	ATATTATTATATGAATTGAG+AGG	-	chr6_1:93074574-93074593	None:intergenic	15.0%
!!	TTAGAAAAAAAAAATACACA+TGG	+	chr6_1:93072979-93072998	Msa0898630:exon	15.0%
!!	GATGAAATTAAATTATTAAC+TGG	+	chr6_1:93073454-93073473	Msa0898630:intron	15.0%
!!!	AATCAAATTGGTTTTATATA+AGG	+	chr6_1:93073727-93073746	Msa0898630:intron	15.0%
!!!	TTATTTTGTTTTTGTTTCAA+TGG	+	chr6_1:93074156-93074175	Msa0898630:intron	15.0%
!!!	AGTAATATTCATTTATTTCT+AGG	+	chr6_1:93074257-93074276	Msa0898630:intron	15.0%
!!!	CACTAATTATAATTTTTTTG+AGG	-	chr6_1:93074326-93074345	None:intergenic	15.0%
!!	TATTAATGTCAATTTATGTT+TGG	+	chr6_1:93074356-93074375	Msa0898630:intron	15.0%
!!	ATATTATTATATGAATTGAG+AGG	-	chr6_1:93074574-93074593	None:intergenic	15.0%
!!	ATGGTAAAATCAAATCAAAT+TGG	+	chr6_1:93073715-93073734	Msa0898630:intron	20.0%
!!!	AAATATTTGTTTTGTTGTTC+AGG	+	chr6_1:93073992-93074011	Msa0898630:intron	20.0%
!!!	ATCTATTTCTAAAAGTTTCA+TGG	+	chr6_1:93074474-93074493	Msa0898630:intron	20.0%
!!	AAGTTAAAATTCATTAGAGT+TGG	+	chr6_1:93074615-93074634	Msa0898630:intron	20.0%
!!!	ATTTTTTCATGTCTTGTATA+TGG	-	chr6_1:93075100-93075119	None:intergenic	20.0%
!!	TAAACTTTGTAGAAAGTAAA+AGG	-	chr6_1:93075136-93075155	None:intergenic	20.0%
!!	ATGGTAAAATCAAATCAAAT+TGG	+	chr6_1:93073715-93073734	Msa0898630:intron	20.0%
!!!	AAATATTTGTTTTGTTGTTC+AGG	+	chr6_1:93073992-93074011	Msa0898630:intron	20.0%
!!!	ATCTATTTCTAAAAGTTTCA+TGG	+	chr6_1:93074474-93074493	Msa0898630:intron	20.0%
!!	AAGTTAAAATTCATTAGAGT+TGG	+	chr6_1:93074615-93074634	Msa0898630:intron	20.0%
!!!	ATTTTTTCATGTCTTGTATA+TGG	-	chr6_1:93075100-93075119	None:intergenic	20.0%
!!	TAAACTTTGTAGAAAGTAAA+AGG	-	chr6_1:93075136-93075155	None:intergenic	20.0%
!!!	GATTTTGATTATTGACATGA+TGG	-	chr6_1:93073228-93073247	None:intergenic	25.0%
!!	TTTTCTTCTTGGAAAATTGT+TGG	-	chr6_1:93073274-93073293	None:intergenic	25.0%
!!!	GATGAACTTTATTTTCTTCT+TGG	-	chr6_1:93073285-93073304	None:intergenic	25.0%
!	GAAAATAAAGTTCATCATGA+AGG	+	chr6_1:93073289-93073308	Msa0898630:CDS	25.0%
!	AGGTAAAAAGAGAAAAATGA+TGG	+	chr6_1:93073309-93073328	Msa0898630:CDS	25.0%
!	GTAGAAGAAATTTACAAGTT+TGG	-	chr6_1:93073395-93073414	None:intergenic	25.0%
!	TTCTATGATTAATTTCAGAG+TGG	+	chr6_1:93073488-93073507	Msa0898630:intron	25.0%
!	ATATTAACCTTATAACATCC+TGG	-	chr6_1:93074068-93074087	None:intergenic	25.0%
!!!	GATTTTGATTATTGACATGA+TGG	-	chr6_1:93073228-93073247	None:intergenic	25.0%
!!	TTTTCTTCTTGGAAAATTGT+TGG	-	chr6_1:93073274-93073293	None:intergenic	25.0%
!!!	GATGAACTTTATTTTCTTCT+TGG	-	chr6_1:93073285-93073304	None:intergenic	25.0%
!	GAAAATAAAGTTCATCATGA+AGG	+	chr6_1:93073289-93073308	Msa0898630:CDS	25.0%
!	AGGTAAAAAGAGAAAAATGA+TGG	+	chr6_1:93073309-93073328	Msa0898630:CDS	25.0%
!	GTAGAAGAAATTTACAAGTT+TGG	-	chr6_1:93073395-93073414	None:intergenic	25.0%
!	TTCTATGATTAATTTCAGAG+TGG	+	chr6_1:93073488-93073507	Msa0898630:intron	25.0%
!	ATATTAACCTTATAACATCC+TGG	-	chr6_1:93074068-93074087	None:intergenic	25.0%
	GAATCAAGAAAAGGAAAAGA+GGG	-	chr6_1:93073040-93073059	None:intergenic	30.0%
	AGAATCAAGAAAAGGAAAAG+AGG	-	chr6_1:93073041-93073060	None:intergenic	30.0%
	CTTTGATCAGAATCAAGAAA+AGG	-	chr6_1:93073049-93073068	None:intergenic	30.0%
	GGAACTATTGAATCAATTCA+TGG	+	chr6_1:93073072-93073091	Msa0898630:CDS	30.0%
	AAGATGTTGTCACAAGAAAA+TGG	-	chr6_1:93073133-93073152	None:intergenic	30.0%
!	ATTTTCTTGTGACAACATCT+TGG	+	chr6_1:93073132-93073151	Msa0898630:CDS	30.0%
	AAATTCTCTTCCAAGTTTCT+TGG	-	chr6_1:93073193-93073212	None:intergenic	30.0%
!	AACTTGGAAGAGAATTTTCA+TGG	+	chr6_1:93073196-93073215	Msa0898630:CDS	30.0%
	TATGATTAATTTCAGAGTGG+TGG	+	chr6_1:93073491-93073510	Msa0898630:intron	30.0%
	TTGTTCATGATTGATGTGTT+TGG	+	chr6_1:93073954-93073973	Msa0898630:intron	30.0%
	TATTGTTCCAGGATGTTATA+AGG	+	chr6_1:93074058-93074077	Msa0898630:CDS	30.0%
!	TATAACATGCTCATTTTGCA+TGG	+	chr6_1:93074529-93074548	Msa0898630:intron	30.0%
	TTGGACAAAGTTTATGTAGT+TGG	-	chr6_1:93074788-93074807	None:intergenic	30.0%
!!	TCCAATTTTAGCACCAATTT+TGG	+	chr6_1:93074803-93074822	Msa0898630:intron	30.0%
!!	ACCAAAATTGGTGCTAAAAT+TGG	-	chr6_1:93074807-93074826	None:intergenic	30.0%
	TAGTCCTAAAGAACCAAAAT+TGG	-	chr6_1:93074819-93074838	None:intergenic	30.0%
	ATCCAAAATTGAAGTCAAAG+TGG	-	chr6_1:93075067-93075086	None:intergenic	30.0%
	GAATCAAGAAAAGGAAAAGA+GGG	-	chr6_1:93073040-93073059	None:intergenic	30.0%
	AGAATCAAGAAAAGGAAAAG+AGG	-	chr6_1:93073041-93073060	None:intergenic	30.0%
	CTTTGATCAGAATCAAGAAA+AGG	-	chr6_1:93073049-93073068	None:intergenic	30.0%
	GGAACTATTGAATCAATTCA+TGG	+	chr6_1:93073072-93073091	Msa0898630:CDS	30.0%
	AAGATGTTGTCACAAGAAAA+TGG	-	chr6_1:93073133-93073152	None:intergenic	30.0%
!	ATTTTCTTGTGACAACATCT+TGG	+	chr6_1:93073132-93073151	Msa0898630:CDS	30.0%
	AAATTCTCTTCCAAGTTTCT+TGG	-	chr6_1:93073193-93073212	None:intergenic	30.0%
!	AACTTGGAAGAGAATTTTCA+TGG	+	chr6_1:93073196-93073215	Msa0898630:CDS	30.0%
	TATGATTAATTTCAGAGTGG+TGG	+	chr6_1:93073491-93073510	Msa0898630:intron	30.0%
	TTGTTCATGATTGATGTGTT+TGG	+	chr6_1:93073954-93073973	Msa0898630:intron	30.0%
	TATTGTTCCAGGATGTTATA+AGG	+	chr6_1:93074058-93074077	Msa0898630:CDS	30.0%
!	TATAACATGCTCATTTTGCA+TGG	+	chr6_1:93074529-93074548	Msa0898630:intron	30.0%
	TTGGACAAAGTTTATGTAGT+TGG	-	chr6_1:93074788-93074807	None:intergenic	30.0%
!!	TCCAATTTTAGCACCAATTT+TGG	+	chr6_1:93074803-93074822	Msa0898630:intron	30.0%
!!	ACCAAAATTGGTGCTAAAAT+TGG	-	chr6_1:93074807-93074826	None:intergenic	30.0%
	TAGTCCTAAAGAACCAAAAT+TGG	-	chr6_1:93074819-93074838	None:intergenic	30.0%
	ATCCAAAATTGAAGTCAAAG+TGG	-	chr6_1:93075067-93075086	None:intergenic	30.0%
	TCTTGATTCTGATCAAAGCA+TGG	+	chr6_1:93073051-93073070	Msa0898630:CDS	35.0%
	ACATGTGTTTCCAAGAAACT+TGG	+	chr6_1:93073180-93073199	Msa0898630:CDS	35.0%
!!	GATTTTCAAGAGACTAGTTC+TGG	+	chr6_1:93073331-93073350	Msa0898630:CDS	35.0%
	AACAGAAGAAGAGAAAGCAA+AGG	+	chr6_1:93073541-93073560	Msa0898630:CDS	35.0%
!!	TTTGTTGTTCAGGTTAGAAG+AGG	+	chr6_1:93074002-93074021	Msa0898630:intron	35.0%
!	TTGTTGTTCAGGTTAGAAGA+GGG	+	chr6_1:93074003-93074022	Msa0898630:intron	35.0%
	TGCTTGCAAAATATTGTTCC+AGG	+	chr6_1:93074047-93074066	Msa0898630:CDS	35.0%
	AGATGATCTAGAAACAATGC+AGG	+	chr6_1:93074447-93074466	Msa0898630:CDS	35.0%
!	CTCATTTTGCATGGTTGTTA+GGG	+	chr6_1:93074538-93074557	Msa0898630:intron	35.0%
	ATATACGCTAACTGTTGTGA+TGG	+	chr6_1:93074590-93074609	Msa0898630:intron	35.0%
!!!	AGCACCAATTTTGGTTCTTT+AGG	+	chr6_1:93074812-93074831	Msa0898630:intron	35.0%
	TTAGCAAGGTATAAGAGAGA+AGG	+	chr6_1:93075007-93075026	Msa0898630:CDS	35.0%
	TAGCAAGGTATAAGAGAGAA+GGG	+	chr6_1:93075008-93075027	Msa0898630:CDS	35.0%
	TCTTGATTCTGATCAAAGCA+TGG	+	chr6_1:93073051-93073070	Msa0898630:CDS	35.0%
	ACATGTGTTTCCAAGAAACT+TGG	+	chr6_1:93073180-93073199	Msa0898630:CDS	35.0%
!!	GATTTTCAAGAGACTAGTTC+TGG	+	chr6_1:93073331-93073350	Msa0898630:CDS	35.0%
	AACAGAAGAAGAGAAAGCAA+AGG	+	chr6_1:93073541-93073560	Msa0898630:CDS	35.0%
!!	TTTGTTGTTCAGGTTAGAAG+AGG	+	chr6_1:93074002-93074021	Msa0898630:intron	35.0%
!	TTGTTGTTCAGGTTAGAAGA+GGG	+	chr6_1:93074003-93074022	Msa0898630:intron	35.0%
	TGCTTGCAAAATATTGTTCC+AGG	+	chr6_1:93074047-93074066	Msa0898630:CDS	35.0%
	AGATGATCTAGAAACAATGC+AGG	+	chr6_1:93074447-93074466	Msa0898630:CDS	35.0%
!	CTCATTTTGCATGGTTGTTA+GGG	+	chr6_1:93074538-93074557	Msa0898630:intron	35.0%
	ATATACGCTAACTGTTGTGA+TGG	+	chr6_1:93074590-93074609	Msa0898630:intron	35.0%
!!!	AGCACCAATTTTGGTTCTTT+AGG	+	chr6_1:93074812-93074831	Msa0898630:intron	35.0%
	TTAGCAAGGTATAAGAGAGA+AGG	+	chr6_1:93075007-93075026	Msa0898630:CDS	35.0%
	TAGCAAGGTATAAGAGAGAA+GGG	+	chr6_1:93075008-93075027	Msa0898630:CDS	35.0%
!	TAATTTCAGAGTGGTGGAAG+AGG	+	chr6_1:93073497-93073516	Msa0898630:intron	40.0%
	GTTCATGTTAGAGCAAGAAG+AGG	+	chr6_1:93073569-93073588	Msa0898630:CDS	40.0%
	ATAGTCACAGTCTAGCAGAA+AGG	+	chr6_1:93073603-93073622	Msa0898630:CDS	40.0%
	TAGTCACAGTCTAGCAGAAA+GGG	+	chr6_1:93073604-93073623	Msa0898630:CDS	40.0%
!!	GTTGTTTTCGTAAGCTACAC+TGG	+	chr6_1:93073755-93073774	Msa0898630:intron	40.0%
	TTTCAATGGTTGCAGACCAT+GGG	+	chr6_1:93074170-93074189	Msa0898630:intron	40.0%
!	GCTCATTTTGCATGGTTGTT+AGG	+	chr6_1:93074537-93074556	Msa0898630:intron	40.0%
	AGGTATAAGAGAGAAGGGTA+TGG	+	chr6_1:93075013-93075032	Msa0898630:CDS	40.0%
!	TATAAGAGAGAAGGGTATGG+AGG	+	chr6_1:93075016-93075035	Msa0898630:CDS	40.0%
	TTGCTTGCTTTCAACCAACT+TGG	+	chr6_1:93075041-93075060	Msa0898630:CDS	40.0%
!!	GGCCACTTTGACTTCAATTT+TGG	+	chr6_1:93075062-93075081	Msa0898630:exon	40.0%
	TAATGTCCACTTGTGCTTGT+AGG	-	chr6_1:93075188-93075207	None:intergenic	40.0%
!	TAATTTCAGAGTGGTGGAAG+AGG	+	chr6_1:93073497-93073516	Msa0898630:intron	40.0%
	GTTCATGTTAGAGCAAGAAG+AGG	+	chr6_1:93073569-93073588	Msa0898630:CDS	40.0%
	ATAGTCACAGTCTAGCAGAA+AGG	+	chr6_1:93073603-93073622	Msa0898630:CDS	40.0%
	TAGTCACAGTCTAGCAGAAA+GGG	+	chr6_1:93073604-93073623	Msa0898630:CDS	40.0%
!!	GTTGTTTTCGTAAGCTACAC+TGG	+	chr6_1:93073755-93073774	Msa0898630:intron	40.0%
	TTTCAATGGTTGCAGACCAT+GGG	+	chr6_1:93074170-93074189	Msa0898630:intron	40.0%
!	GCTCATTTTGCATGGTTGTT+AGG	+	chr6_1:93074537-93074556	Msa0898630:intron	40.0%
	AGGTATAAGAGAGAAGGGTA+TGG	+	chr6_1:93075013-93075032	Msa0898630:CDS	40.0%
!	TATAAGAGAGAAGGGTATGG+AGG	+	chr6_1:93075016-93075035	Msa0898630:CDS	40.0%
	TTGCTTGCTTTCAACCAACT+TGG	+	chr6_1:93075041-93075060	Msa0898630:CDS	40.0%
!!	GGCCACTTTGACTTCAATTT+TGG	+	chr6_1:93075062-93075081	Msa0898630:exon	40.0%
	TAATGTCCACTTGTGCTTGT+AGG	-	chr6_1:93075188-93075207	None:intergenic	40.0%
!	ACTCCTGCAGTTTCTGAAAG+TGG	+	chr6_1:93073361-93073380	Msa0898630:CDS	45.0%
	CTTCCACTTTCAGAAACTGC+AGG	-	chr6_1:93073367-93073386	None:intergenic	45.0%
	GACTGTGACTATCAGTAGCT+TGG	-	chr6_1:93073595-93073614	None:intergenic	45.0%
	GTTTCAATGGTTGCAGACCA+TGG	+	chr6_1:93074169-93074188	Msa0898630:intron	45.0%
	CAACATTACTGCCATTCCCA+TGG	-	chr6_1:93074189-93074208	None:intergenic	45.0%
	CATGGGAATGGCAGTAATGT+TGG	+	chr6_1:93074187-93074206	Msa0898630:CDS	45.0%
!!	TTGATTTGTGGCAGAGAGCA+AGG	+	chr6_1:93074966-93074985	Msa0898630:intron	45.0%
!	TGATTTGTGGCAGAGAGCAA+GGG	+	chr6_1:93074967-93074986	Msa0898630:intron	45.0%
	CTGAGGCAAAAGAGTTAGCA+AGG	+	chr6_1:93074993-93075012	Msa0898630:CDS	45.0%
	TGAAGTCAAAGTGGCCAAGT+TGG	-	chr6_1:93075058-93075077	None:intergenic	45.0%
	TGCTTGTAGGTAGCATAGAG+TGG	-	chr6_1:93075175-93075194	None:intergenic	45.0%
	ATGCTACCTACAAGCACAAG+TGG	+	chr6_1:93075179-93075198	Msa0898630:three_prime_UTR	45.0%
!	ACTCCTGCAGTTTCTGAAAG+TGG	+	chr6_1:93073361-93073380	Msa0898630:CDS	45.0%
	CTTCCACTTTCAGAAACTGC+AGG	-	chr6_1:93073367-93073386	None:intergenic	45.0%
	GACTGTGACTATCAGTAGCT+TGG	-	chr6_1:93073595-93073614	None:intergenic	45.0%
	GTTTCAATGGTTGCAGACCA+TGG	+	chr6_1:93074169-93074188	Msa0898630:intron	45.0%
	CAACATTACTGCCATTCCCA+TGG	-	chr6_1:93074189-93074208	None:intergenic	45.0%
	CATGGGAATGGCAGTAATGT+TGG	+	chr6_1:93074187-93074206	Msa0898630:CDS	45.0%
!!	TTGATTTGTGGCAGAGAGCA+AGG	+	chr6_1:93074966-93074985	Msa0898630:intron	45.0%
!	TGATTTGTGGCAGAGAGCAA+GGG	+	chr6_1:93074967-93074986	Msa0898630:intron	45.0%
	CTGAGGCAAAAGAGTTAGCA+AGG	+	chr6_1:93074993-93075012	Msa0898630:CDS	45.0%
	TGAAGTCAAAGTGGCCAAGT+TGG	-	chr6_1:93075058-93075077	None:intergenic	45.0%
	TGCTTGTAGGTAGCATAGAG+TGG	-	chr6_1:93075175-93075194	None:intergenic	45.0%
	ATGCTACCTACAAGCACAAG+TGG	+	chr6_1:93075179-93075198	Msa0898630:three_prime_UTR	45.0%
!!	TTATATTTAGTAATATTTAT+AGG	+	chr6_1:93074690-93074709	Msa0898630:intron	5.0%
!!!	TTAAAAAACTTTTTTTTAAA+AGG	-	chr6_1:93074861-93074880	None:intergenic	5.0%
!!	TTATATTTAGTAATATTTAT+AGG	+	chr6_1:93074690-93074709	Msa0898630:intron	5.0%
!!!	TTAAAAAACTTTTTTTTAAA+AGG	-	chr6_1:93074861-93074880	None:intergenic	5.0%
	ATGGTTGCAGACCATGGGAA+TGG	+	chr6_1:93074175-93074194	Msa0898630:intron	50.0%
	ATGGTTGCAGACCATGGGAA+TGG	+	chr6_1:93074175-93074194	Msa0898630:intron	50.0%
!!	GCAGAGAGCAAGGGCATCTG+AGG	+	chr6_1:93074976-93074995	Msa0898630:intron	60.0%
!!	GCAGAGAGCAAGGGCATCTG+AGG	+	chr6_1:93074976-93074995	Msa0898630:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	93072936	93075282	93072936	ID=Msa0898630;Name=Msa0898630
chr6_1	mRNA	93072936	93075282	93072936	ID=Msa0898630-mRNA-1;Parent=Msa0898630;Name=Msa0898630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62\|1\|1\|1\|1\|1\|6\|210\|275
chr6_1	exon	93072936	93073399	93072936	ID=Msa0898630-mRNA-1:exon:15687;Parent=Msa0898630-mRNA-1
chr6_1	exon	93073506	93073625	93073506	ID=Msa0898630-mRNA-1:exon:15688;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074014	93074079	93074014	ID=Msa0898630-mRNA-1:exon:15689;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074185	93074253	93074185	ID=Msa0898630-mRNA-1:exon:15690;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074391	93074468	93074391	ID=Msa0898630-mRNA-1:exon:15691;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074980	93075282	93074980	ID=Msa0898630-mRNA-1:exon:15692;Parent=Msa0898630-mRNA-1
chr6_1	five_prime_UTR	93072936	93072997	93072936	ID=Msa0898630-mRNA-1:five_prime_utr;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93072998	93073399	93072998	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93073506	93073625	93073506	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074014	93074079	93074014	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074185	93074253	93074185	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074391	93074468	93074391	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074980	93075072	93074980	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	three_prime_UTR	93075073	93075282	93075073	ID=Msa0898630-mRNA-1:three_prime_utr;Parent=Msa0898630-mRNA-1

Gene Sequence

>Msa0898630

ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTCTTGATTCTGATCAAAGCATGGAACTATTGAATCAATTCATGGAGAATTCAAACATGAACATGATGCATAATTTGATGCCATTTTCTTGTGACAACATCTTGGAACATCATCAACAACAAGAACAAGAACATGTGTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCATCATGTCAATAATCAAAATCACAATGCAGTTCAACTTTCACTTCCAACAATTTTCCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGAAAAATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAAACCAAACTTAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAATTGAAGTGCTTGCAAAATATTGTTCCAGGATGTTATAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAATTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGATTTCAATTCAGAGACAGATGATCTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGGTATGGAGGAATTGCTTGCTTTCAACCAACTTGGCCACTTTGA

Protein sequence

>Msa0898630

MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMHNLMPFSCDNILEHHQQQEQEHVFPRNLEENFHGLVHHVNNQNHNAVQLSLPTIFQEENKVHHEGKKRKMMDFQETSSGNSTPAVSESGSKTKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREGYGGIACFQPTWPL*