AlfalfaGEDB | Msa0898630

M. sativa cultivar zhongmu-4 / Msa0898630

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902446 GO:1902448 GO:1903506 GO:2000030 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	XP_024641461.2	97.091	275	5	1	1	275	1	272	0.0	560

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	sp\|Q8GWK7\|BEE3_ARATH	50.775	258	86	10	38	275	25	261	2.60e-63	202

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	A0A396HHQ6	97.091	275	5	1	1	275	1	272	0.0	560

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TFs/TRs:

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Gene ID	Type	Classification
Msa0898630	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	MtrunA17_Chr6g0484271	97.091	275	5	1	1	275	1	272	0.0	560
Msa0898630	MtrunA17_Chr7g0234761	60.909	110	43	0	129	238	288	397	3.44e-37	137
Msa0898630	MtrunA17_Chr8g0339091	62.136	103	39	0	136	238	269	371	1.31e-35	133
Msa0898630	MtrunA17_Chr5g0415291	55.963	109	41	1	129	230	76	184	1.29e-34	125
Msa0898630	MtrunA17_Chr3g0131771	64.894	94	32	1	149	241	138	231	2.10e-34	127
Msa0898630	MtrunA17_Chr8g0365941	58.559	111	44	1	127	237	276	384	8.33e-34	127
Msa0898630	MtrunA17_Chr5g0421111	59.633	109	42	1	130	238	339	445	1.23e-33	128
Msa0898630	MtrunA17_Chr3g0144641	45.752	153	70	2	100	241	122	272	2.20e-33	125
Msa0898630	MtrunA17_Chr4g0035101	71.951	82	23	0	154	235	139	220	2.22e-33	124
Msa0898630	MtrunA17_Chr8g0363921	41.146	192	70	6	92	244	60	247	2.57e-33	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898630	AT1G73830.1	50.775	258	86	10	38	275	25	261	2.65e-64	202
Msa0898630	AT1G73830.2	50.775	258	85	11	38	275	25	260	3.37e-62	197
Msa0898630	AT1G18400.1	78.704	108	23	0	155	262	142	249	3.99e-59	189
Msa0898630	AT1G18400.2	84.615	91	14	0	155	245	142	232	6.05e-53	172
Msa0898630	AT1G25330.1	64.407	118	41	1	148	264	94	211	4.04e-47	157
Msa0898630	AT5G50915.3	62.264	106	39	1	137	241	115	220	9.80e-39	137
Msa0898630	AT5G50915.4	62.264	106	39	1	137	241	115	220	9.80e-39	137
Msa0898630	AT5G50915.1	62.264	106	39	1	137	241	115	220	1.62e-38	137
Msa0898630	AT5G50915.2	62.264	106	39	1	137	241	115	220	1.62e-38	137
Msa0898630	AT3G07340.1	55.147	136	50	2	106	235	205	335	6.87e-37	136

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Find 45 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTCTTCCAAGTTTCT+TGG	0.225496	6_1:-93073190	None:intergenic
AACAGAAGAAGAGAAAGCAA+AGG	0.600831	6_1:+93073541	Msa0898630:CDS
AAGATGTTGTCACAAGAAAA+TGG	0.334761	6_1:-93073130	None:intergenic
ACATGTGTTTCCAAGAAACT+TGG	0.456545	6_1:+93073180	Msa0898630:CDS
ACTCCTGCAGTTTCTGAAAG+TGG	0.440216	6_1:+93073361	Msa0898630:CDS
AGAATCAAGAAAAGGAAAAG+AGG	0.517457	6_1:-93073038	None:intergenic
AGATGATCTAGAAACAATGC+AGG	0.618754	6_1:+93074447	Msa0898630:CDS
AGGTATAAGAGAGAAGGGTA+TGG	0.517402	6_1:+93075013	Msa0898630:CDS
ATAGTCACAGTCTAGCAGAA+AGG	0.561228	6_1:+93073603	Msa0898630:CDS
ATATTAACCTTATAACATCC+TGG	0.539111	6_1:-93074065	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATCAAGAAAAGGAAAAGA+GGG	-	chr6_1:93073040-93073059	None:intergenic	30.0%
AGAATCAAGAAAAGGAAAAG+AGG	-	chr6_1:93073041-93073060	None:intergenic	30.0%
CTTTGATCAGAATCAAGAAA+AGG	-	chr6_1:93073049-93073068	None:intergenic	30.0%
GGAACTATTGAATCAATTCA+TGG	+	chr6_1:93073072-93073091	Msa0898630:CDS	30.0%
AAGATGTTGTCACAAGAAAA+TGG	-	chr6_1:93073133-93073152	None:intergenic	30.0%
AAATTCTCTTCCAAGTTTCT+TGG	-	chr6_1:93073193-93073212	None:intergenic	30.0%
TATGATTAATTTCAGAGTGG+TGG	+	chr6_1:93073491-93073510	Msa0898630:intron	30.0%
TTGTTCATGATTGATGTGTT+TGG	+	chr6_1:93073954-93073973	Msa0898630:intron	30.0%
TATTGTTCCAGGATGTTATA+AGG	+	chr6_1:93074058-93074077	Msa0898630:CDS	30.0%
TTGGACAAAGTTTATGTAGT+TGG	-	chr6_1:93074788-93074807	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	93072936	93075282	93072936	ID=Msa0898630;Name=Msa0898630
chr6_1	mRNA	93072936	93075282	93072936	ID=Msa0898630-mRNA-1;Parent=Msa0898630;Name=Msa0898630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62\|1\|1\|1\|1\|1\|6\|210\|275
chr6_1	exon	93072936	93073399	93072936	ID=Msa0898630-mRNA-1:exon:15687;Parent=Msa0898630-mRNA-1
chr6_1	exon	93073506	93073625	93073506	ID=Msa0898630-mRNA-1:exon:15688;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074014	93074079	93074014	ID=Msa0898630-mRNA-1:exon:15689;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074185	93074253	93074185	ID=Msa0898630-mRNA-1:exon:15690;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074391	93074468	93074391	ID=Msa0898630-mRNA-1:exon:15691;Parent=Msa0898630-mRNA-1
chr6_1	exon	93074980	93075282	93074980	ID=Msa0898630-mRNA-1:exon:15692;Parent=Msa0898630-mRNA-1
chr6_1	five_prime_UTR	93072936	93072997	93072936	ID=Msa0898630-mRNA-1:five_prime_utr;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93072998	93073399	93072998	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93073506	93073625	93073506	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074014	93074079	93074014	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074185	93074253	93074185	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074391	93074468	93074391	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	CDS	93074980	93075072	93074980	ID=Msa0898630-mRNA-1:cds;Parent=Msa0898630-mRNA-1
chr6_1	three_prime_UTR	93075073	93075282	93075073	ID=Msa0898630-mRNA-1:three_prime_utr;Parent=Msa0898630-mRNA-1

Gene Sequence

>Msa0898630

ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTCTTGATTCTGATCAAAGCATGGAACTATTGAATCAATTCATGGAGAATTCAAACATGAACATGATGCATAATTTGATGCCATTTTCTTGTGACAACATCTTGGAACATCATCAACAACAAGAACAAGAACATGTGTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCATCATGTCAATAATCAAAATCACAATGCAGTTCAACTTTCACTTCCAACAATTTTCCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGAAAAATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAAACCAAACTTAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAATTGAAGTGCTTGCAAAATATTGTTCCAGGATGTTATAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAATTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGATTTCAATTCAGAGACAGATGATCTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGGTATGGAGGAATTGCTTGCTTTCAACCAACTTGGCCACTTTGA

Protein sequence

>Msa0898630

MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMHNLMPFSCDNILEHHQQQEQEHVFPRNLEENFHGLVHHVNNQNHNAVQLSLPTIFQEENKVHHEGKKRKMMDFQETSSGNSTPAVSESGSKTKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREGYGGIACFQPTWPL*