AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899460 MtrunA17_Chr6g0485431 88.920 361 40 0 58 418 1 361 0.0 661
Msa0899460 MtrunA17_Chr1g0189391 45.075 335 152 7 115 418 1 334 2.71e-80 251
Msa0899460 MtrunA17_Chr7g0249311 41.353 133 76 2 160 292 342 472 5.05e-24 104
Msa0899460 MtrunA17_Chr7g0249311 41.333 75 42 2 212 286 180 252 7.77e-13 70.5
Msa0899460 MtrunA17_Chr5g0418191 57.333 75 31 1 197 271 306 379 5.25e-23 100
Msa0899460 MtrunA17_Chr5g0418191 40.385 104 51 5 183 282 119 215 1.57e-13 72.0
Msa0899460 MtrunA17_Chr7g0263531 34.868 152 94 3 137 288 291 437 6.80e-23 100
Msa0899460 MtrunA17_Chr7g0263531 46.667 75 38 2 212 286 190 262 7.30e-14 73.2
Msa0899460 MtrunA17_Chr3g0129321 35.606 132 77 3 141 272 55 178 2.59e-22 94.4
Msa0899460 MtrunA17_Chr4g0042831 56.000 75 32 1 197 271 264 337 3.09e-22 97.8
Msa0899460 MtrunA17_Chr4g0042831 45.833 72 37 2 205 275 138 208 7.64e-13 69.7
Msa0899460 MtrunA17_Chr7g0218081 54.667 75 33 1 197 271 396 469 6.93e-22 97.8
Msa0899460 MtrunA17_Chr7g0218081 48.387 62 30 2 210 271 227 286 5.81e-12 67.4
Msa0899460 MtrunA17_Chr4g0051881 49.383 81 40 1 197 277 164 243 1.80e-21 94.7
Msa0899460 MtrunA17_Chr7g0249301 55.263 76 33 1 196 271 277 351 2.09e-21 95.1
Msa0899460 MtrunA17_Chr7g0249301 41.558 77 43 2 210 286 61 135 1.42e-12 68.9
Msa0899460 MtrunA17_Chr7g0270191 43.182 88 49 1 198 285 132 218 2.31e-21 93.6
Msa0899460 MtrunA17_Chr5g0445311 34.211 152 96 2 120 271 276 423 6.76e-21 94.7
Msa0899460 MtrunA17_Chr1g0194481 46.835 79 41 1 197 275 144 221 1.07e-20 92.4
Msa0899460 MtrunA17_Chr3g0101131 37.179 156 82 5 131 271 320 474 1.08e-20 94.4
Msa0899460 MtrunA17_Chr5g0443131 48.148 81 41 1 197 277 143 222 1.75e-20 91.3
Msa0899460 MtrunA17_Chr3g0079691 45.631 103 55 1 169 271 453 554 9.62e-20 91.7
Msa0899460 MtrunA17_Chr3g0079691 46.154 65 33 2 212 276 281 343 9.08e-12 67.0
Msa0899460 MtrunA17_Chr4g0004911 52.632 76 35 1 197 272 322 396 2.06e-19 90.1
Msa0899460 MtrunA17_Chr4g0004911 44.615 65 35 1 212 276 185 248 4.85e-13 70.9
Msa0899460 MtrunA17_Chr2g0294231 44.444 81 44 1 197 277 189 268 3.05e-19 89.0
Msa0899460 MtrunA17_Chr3g0129361 48.611 72 36 1 197 268 130 200 3.66e-19 85.9
Msa0899460 MtrunA17_Chr8g0383351 47.945 73 36 2 197 268 145 216 6.44e-19 85.5
Msa0899460 MtrunA17_Chr5g0418781 48.718 78 36 2 197 271 110 186 7.43e-19 86.3
Msa0899460 MtrunA17_Chr4g0068541 44.872 78 42 1 198 275 195 271 1.05e-18 87.8
Msa0899460 MtrunA17_Chr7g0248721 50.685 73 34 2 196 268 126 196 1.61e-18 84.0
Msa0899460 MtrunA17_Chr5g0447701 35.714 126 80 1 146 271 187 311 2.89e-18 85.9
Msa0899460 MtrunA17_Chr7g0243891 43.878 98 54 1 174 271 337 433 3.03e-18 87.0
Msa0899460 MtrunA17_Chr7g0243891 38.750 80 47 2 207 286 212 289 1.22e-11 66.2
Msa0899460 MtrunA17_Chr8g0383251 46.753 77 40 1 198 274 95 170 3.19e-18 82.0
Msa0899460 MtrunA17_Chr5g0432161 48.193 83 42 1 189 271 399 480 3.77e-18 86.7
Msa0899460 MtrunA17_Chr5g0432161 43.750 80 43 2 209 288 242 319 8.29e-11 63.9
Msa0899460 MtrunA17_Chr3g0106491 52.000 75 35 1 197 271 351 424 6.79e-18 85.5
Msa0899460 MtrunA17_Chr3g0106491 42.105 76 42 2 202 277 189 262 3.61e-12 68.2
Msa0899460 MtrunA17_Chr8g0335811 47.222 72 37 1 197 268 140 210 1.42e-17 81.3
Msa0899460 MtrunA17_Chr7g0224801 50.000 68 33 1 201 268 83 149 2.70e-17 79.3
Msa0899460 MtrunA17_Chr1g0150801 47.297 74 38 1 195 268 86 158 4.27e-17 78.2
Msa0899460 MtrunA17_Chr1g0188941 46.667 75 39 1 197 271 37 110 5.62e-17 76.6
Msa0899460 MtrunA17_Chr8g0386241 46.479 71 37 1 198 268 90 159 6.92e-16 75.5
Msa0899460 MtrunA17_Chr3g0099641 40.517 116 55 5 191 305 232 334 8.32e-16 79.0
Msa0899460 MtrunA17_Chr4g0074001 44.444 81 44 1 197 277 345 424 2.13e-15 78.2
Msa0899460 MtrunA17_Chr7g0238921 55.172 58 25 1 211 268 124 180 3.30e-15 76.3
Msa0899460 MtrunA17_Chr4g0060271 46.053 76 39 2 198 272 242 316 7.09e-15 76.6
Msa0899460 MtrunA17_Chr2g0293481 34.127 126 68 4 168 285 230 348 8.49e-15 76.3
Msa0899460 MtrunA17_Chr2g0284321 51.613 62 28 2 211 271 35 95 1.08e-14 72.8
Msa0899460 MtrunA17_Chr8g0379461 49.206 63 30 2 211 272 76 137 1.18e-14 73.2
Msa0899460 MtrunA17_Chr7g0270831 46.667 75 38 2 198 271 203 276 1.45e-14 75.1
Msa0899460 MtrunA17_Chr8g0348311 47.561 82 38 4 204 283 147 225 1.54e-14 74.3
Msa0899460 MtrunA17_Chr1g0147881 49.254 67 32 2 212 277 263 328 2.90e-14 73.6
Msa0899460 MtrunA17_Chr5g0401821 34.821 112 60 3 167 277 166 265 3.49e-14 72.4
Msa0899460 MtrunA17_Chr7g0270051 46.250 80 35 3 199 271 35 113 3.90e-14 72.0
Msa0899460 MtrunA17_Chr2g0319961 50.794 63 29 2 211 272 80 141 4.10e-14 72.0
Msa0899460 MtrunA17_Chr7g0216891 30.978 184 102 6 106 272 105 280 4.18e-14 74.3
Msa0899460 MtrunA17_Chr2g0322391 46.667 75 38 2 198 271 336 409 4.36e-14 74.3
Msa0899460 MtrunA17_Chr4g0071521 37.000 100 50 3 176 274 221 308 4.44e-14 72.8
Msa0899460 MtrunA17_Chr2g0288871 45.333 75 39 2 198 271 292 365 4.82e-14 73.9
Msa0899460 MtrunA17_Chr7g0248691 47.619 84 40 3 207 289 150 230 5.07e-14 72.8
Msa0899460 MtrunA17_Chr3g0139021 39.806 103 49 3 167 268 281 371 5.88e-14 73.2
Msa0899460 MtrunA17_Chr1g0150281 38.947 95 52 4 180 269 105 198 6.76e-14 71.6
Msa0899460 MtrunA17_Chr8g0387501 39.583 96 48 4 212 306 130 216 1.33e-13 70.9
Msa0899460 MtrunA17_Chr4g0051181 45.000 80 42 2 194 272 226 304 2.20e-13 71.6
Msa0899460 MtrunA17_Chr2g0302391 46.154 78 40 2 212 288 212 288 3.39e-13 70.9
Msa0899460 MtrunA17_Chr2g0333851 40.260 77 42 3 198 271 154 229 4.43e-13 69.7
Msa0899460 MtrunA17_Chr4g0025061 42.500 80 44 2 198 276 347 425 6.35e-13 70.5
Msa0899460 MtrunA17_Chr4g0053281 35.714 98 50 3 174 270 240 325 8.29e-13 69.3
Msa0899460 MtrunA17_Chr8g0387981 43.750 80 36 3 195 266 111 189 1.26e-12 68.9
Msa0899460 MtrunA17_Chr7g0228941 51.724 58 26 2 212 268 53 109 2.10e-12 63.9
Msa0899460 MtrunA17_Chr1g0184691 50.847 59 27 2 212 269 294 351 2.25e-12 68.2
Msa0899460 MtrunA17_Chr1g0202461 45.556 90 44 4 212 299 262 348 2.68e-12 67.8
Msa0899460 MtrunA17_Chr1g0150271 36.364 77 45 3 198 271 86 161 2.98e-11 63.5
Msa0899460 MtrunA17_Chr2g0289181 42.466 73 39 3 205 275 7 78 9.54e-11 61.6
Msa0899460 MtrunA17_Chr5g0447711 37.037 81 50 1 191 271 210 289 9.98e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899460 AT1G29860.1 56.757 74 31 1 198 271 123 195 2.90e-22 96.3
Msa0899460 AT5G41570.1 53.425 73 33 1 196 268 83 154 3.02e-22 93.6
Msa0899460 AT4G18170.1 56.000 75 32 1 197 271 158 231 3.19e-22 97.1
Msa0899460 AT1G13960.1 54.667 75 33 1 197 271 395 468 3.72e-22 99.0
Msa0899460 AT1G13960.1 46.575 73 36 3 205 276 222 292 7.16e-13 70.5
Msa0899460 AT1G13960.2 54.667 75 33 1 197 271 242 315 4.68e-22 97.1
Msa0899460 AT1G13960.2 46.575 73 36 3 205 276 69 139 1.93e-12 68.6
Msa0899460 AT2G03340.1 54.667 75 33 1 197 271 401 474 8.77e-22 97.8
Msa0899460 AT2G03340.1 47.761 67 32 3 206 271 244 308 2.79e-12 68.9
Msa0899460 AT1G64000.1 53.521 71 32 1 198 268 101 170 1.00e-21 92.8
Msa0899460 AT5G46350.1 54.667 75 33 1 197 271 169 242 1.03e-21 95.5
Msa0899460 AT5G56270.1 38.194 144 85 3 128 271 407 546 1.77e-20 94.4
Msa0899460 AT5G56270.1 50.877 57 26 2 212 268 274 328 3.36e-11 65.9
Msa0899460 AT2G47260.1 47.436 78 40 1 198 275 161 237 2.94e-20 91.7
Msa0899460 AT1G69310.4 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0899460 AT1G69310.2 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0899460 AT1G69310.1 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0899460 AT5G49520.1 47.436 78 40 1 198 275 208 284 4.34e-20 92.0
Msa0899460 AT3G01080.2 53.333 75 34 1 197 271 330 403 4.57e-20 92.4
Msa0899460 AT3G01080.2 48.387 62 30 2 210 271 204 263 8.24e-11 63.9
Msa0899460 AT3G01080.1 53.333 75 34 1 197 271 292 365 5.36e-20 92.0
Msa0899460 AT3G01080.1 48.387 62 30 2 210 271 166 225 9.63e-11 63.9
Msa0899460 AT2G46130.1 51.389 72 34 1 197 268 16 86 7.87e-20 84.7
Msa0899460 AT5G07100.1 54.667 75 33 1 197 271 220 293 1.59e-19 89.0
Msa0899460 AT5G07100.1 35.484 93 56 3 188 277 91 182 5.97e-11 63.5
Msa0899460 AT5G07100.2 54.667 75 33 1 197 271 127 200 1.66e-19 87.0
Msa0899460 AT5G07100.4 54.667 75 33 1 197 271 127 200 1.66e-19 87.0
Msa0899460 AT5G07100.5 54.667 75 33 1 197 271 127 200 1.66e-19 87.0
Msa0899460 AT5G07100.3 54.667 75 33 1 197 271 127 200 1.66e-19 87.0
Msa0899460 AT5G64810.1 32.847 137 84 2 132 268 38 166 3.72e-19 85.5
Msa0899460 AT1G55600.1 50.000 74 36 1 198 271 294 366 4.39e-19 89.7
Msa0899460 AT4G26640.7 52.000 75 35 1 197 271 327 400 1.03e-18 88.6
Msa0899460 AT4G26640.2 52.000 75 35 1 197 271 367 440 1.12e-18 88.6
Msa0899460 AT4G26640.1 52.000 75 35 1 197 271 295 368 1.23e-18 88.2
Msa0899460 AT4G26640.5 52.000 75 35 1 197 271 191 264 1.36e-18 87.4
Msa0899460 AT4G26640.6 52.000 75 35 1 197 271 191 264 1.36e-18 87.4
Msa0899460 AT4G26640.4 52.000 75 35 1 197 271 191 264 1.36e-18 87.4
Msa0899460 AT4G26640.3 52.000 75 35 1 197 271 191 264 1.36e-18 87.4
Msa0899460 AT2G04880.2 50.000 74 36 1 198 271 270 342 1.71e-18 87.8
Msa0899460 AT2G04880.2 40.217 92 51 3 205 294 105 194 3.22e-11 65.5
Msa0899460 AT2G38470.1 52.000 75 35 1 197 271 348 421 1.93e-18 87.8
Msa0899460 AT2G04880.1 50.000 74 36 1 198 271 294 366 1.97e-18 87.8
Msa0899460 AT2G04880.1 39.216 102 56 4 205 302 105 204 4.04e-11 65.1
Msa0899460 AT2G21900.1 44.156 77 39 2 200 273 95 170 2.35e-18 83.6
Msa0899460 AT4G39410.1 50.000 72 35 1 197 268 209 279 2.67e-18 85.5
Msa0899460 AT2G37260.3 52.174 69 32 1 200 268 258 325 2.84e-18 85.9
Msa0899460 AT2G37260.3 36.220 127 56 5 212 338 86 187 2.87e-12 68.2
Msa0899460 AT5G26170.1 45.070 71 38 1 198 268 100 169 3.11e-18 82.4
Msa0899460 AT2G37260.2 52.174 69 32 1 200 268 256 323 3.11e-18 85.9
Msa0899460 AT2G37260.2 36.220 127 56 5 212 338 84 185 3.28e-12 67.8
Msa0899460 AT2G37260.1 54.688 64 28 1 205 268 343 405 3.55e-18 86.7
Msa0899460 AT2G37260.1 36.220 127 56 5 212 338 166 267 2.89e-12 68.6
Msa0899460 AT2G30250.1 45.679 81 43 1 197 277 314 393 3.97e-18 86.3
Msa0899460 AT2G44745.1 47.222 72 37 1 197 268 131 201 6.31e-18 82.4
Msa0899460 AT3G62340.1 46.154 78 41 1 196 273 103 179 7.53e-18 83.6
Msa0899460 AT4G30935.1 53.030 66 30 1 212 277 332 396 4.31e-17 83.6
Msa0899460 AT5G13080.1 47.887 71 36 1 198 268 54 123 9.76e-17 77.4
Msa0899460 AT4G23550.1 39.496 119 60 6 194 304 124 238 2.40e-16 79.7
Msa0899460 AT4G26440.1 40.404 99 58 1 173 271 334 431 3.91e-16 80.9
Msa0899460 AT1G69310.3 43.182 88 39 4 197 278 133 215 1.48e-15 77.0
Msa0899460 AT4G01250.1 42.991 107 47 5 211 304 128 233 2.02e-15 77.0
Msa0899460 AT1G29280.1 49.231 65 31 2 211 274 74 137 2.04e-15 76.3
Msa0899460 AT2G46130.2 47.222 72 33 2 197 268 16 82 2.70e-15 72.0
Msa0899460 AT3G01970.1 41.667 72 41 1 198 269 52 122 1.37e-14 71.2
Msa0899460 AT1G30650.1 49.206 63 30 2 211 272 217 278 2.27e-14 75.1
Msa0899460 AT2G34830.1 34.109 129 65 5 160 277 160 279 2.69e-14 74.7
Msa0899460 AT2G34830.2 48.529 68 31 3 211 277 224 288 2.83e-14 74.7
Msa0899460 AT1G62300.1 48.000 75 37 2 198 271 299 372 2.92e-14 75.1
Msa0899460 AT5G15130.2 41.935 93 44 3 198 289 172 255 2.93e-14 75.1
Msa0899460 AT5G15130.1 41.935 93 44 3 198 289 214 297 3.00e-14 75.1
Msa0899460 AT3G58710.1 44.578 83 42 3 211 290 71 152 4.35e-14 72.4
Msa0899460 AT4G04450.2 37.615 109 64 3 164 271 153 258 4.50e-14 73.9
Msa0899460 AT3G58710.2 44.578 83 42 3 211 290 70 151 4.55e-14 72.4
Msa0899460 AT1G68150.1 41.304 92 52 2 194 284 218 308 4.86e-14 73.6
Msa0899460 AT4G31550.2 39.216 102 49 3 168 268 213 302 5.52e-14 72.8
Msa0899460 AT2G25000.2 46.032 63 32 2 210 271 102 163 6.41e-14 71.2
Msa0899460 AT2G25000.4 46.032 63 32 2 210 271 102 163 6.41e-14 71.2
Msa0899460 AT2G25000.3 46.032 63 32 2 210 271 124 185 9.89e-14 71.2
Msa0899460 AT4G04450.1 37.615 109 64 3 164 271 247 352 1.44e-13 72.8
Msa0899460 AT2G25000.1 46.032 63 32 2 210 271 145 206 1.54e-13 70.9
Msa0899460 AT4G22070.4 46.667 75 38 2 198 271 284 357 1.73e-13 72.8
Msa0899460 AT4G22070.3 46.667 75 38 2 198 271 284 357 1.73e-13 72.8
Msa0899460 AT4G22070.2 46.667 75 38 2 198 271 284 357 1.73e-13 72.8
Msa0899460 AT4G22070.1 46.667 75 38 2 198 271 284 357 1.73e-13 72.8
Msa0899460 AT2G23320.1 51.667 60 27 2 212 270 241 299 3.01e-13 70.9
Msa0899460 AT2G30590.1 53.448 58 25 2 212 268 314 370 3.15e-13 71.2
Msa0899460 AT4G31550.1 53.448 58 25 2 212 268 247 303 3.83e-13 70.5
Msa0899460 AT1G18860.1 26.214 206 130 7 84 271 98 299 3.83e-13 71.6
Msa0899460 AT5G52830.1 42.308 104 49 4 207 309 161 254 5.84e-13 70.1
Msa0899460 AT4G24240.1 36.697 109 62 4 172 274 237 344 7.43e-13 69.7
Msa0899460 AT5G43290.1 40.476 84 48 2 211 293 114 196 9.35e-13 68.6
Msa0899460 AT4G11070.2 31.944 144 78 6 183 308 76 217 9.37e-13 68.9
Msa0899460 AT4G31800.2 44.444 63 33 2 210 271 110 171 1.01e-12 68.2
Msa0899460 AT4G31800.1 44.444 63 33 2 210 271 175 236 1.41e-12 68.6
Msa0899460 AT4G11070.1 31.944 144 78 6 183 308 108 249 1.46e-12 68.6
Msa0899460 AT5G28650.1 41.284 109 57 5 163 268 215 319 2.36e-12 68.2
Msa0899460 AT2G24570.1 51.724 58 26 2 212 268 244 300 7.59e-12 66.6
Msa0899460 AT1G80840.1 41.270 63 35 2 210 271 145 206 8.69e-12 66.2
Msa0899460 AT5G45050.4 46.875 64 32 2 211 273 1041 1103 1.13e-11 67.4
Msa0899460 AT5G45050.1 46.875 64 32 2 211 273 1180 1242 1.16e-11 67.4
Msa0899460 AT5G45050.2 46.875 64 32 2 211 273 1152 1214 1.21e-11 67.4
Msa0899460 AT3G04670.1 38.235 102 50 3 168 268 230 319 1.62e-11 65.5
Msa0899460 AT5G24110.1 47.541 61 28 2 210 267 112 171 2.04e-11 65.1

Find 90 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTGTTGTTCATCTA+AGG 0.247246 6_1:-94587335 None:intergenic
GGAAAGGAAATATTTGAAAT+TGG 0.258518 6_1:-94587139 None:intergenic
CATCAGCTGCAACAACTTCT+TGG 0.283729 6_1:-94587297 None:intergenic
TATGAAACAATTACATATTT+CGG 0.286298 6_1:-94588437 None:intergenic
ATGCCTTATGGATATATTAA+TGG 0.289062 6_1:+94588698 Msa0899460:CDS
TATTTGAAATCCACCAATAC+TGG 0.290258 6_1:-94588777 None:intergenic
TATATATACCTGAGAATAAT+CGG 0.300770 6_1:-94585682 None:intergenic
TTCAAGAAAGGATTATTATT+AGG 0.304221 6_1:-94588653 None:intergenic
TCAATTCTGAACACTACTTT+TGG 0.317569 6_1:-94587609 None:intergenic
GAGTTGATTGCTCGGCTATA+AGG 0.347334 6_1:+94585613 Msa0899460:CDS
CGAAGAAAATCATGAAGTTC+TGG 0.347870 6_1:-94588812 None:intergenic
AATACCATGATGATGCCTTA+TGG 0.355278 6_1:+94588686 Msa0899460:CDS
GGAAACCAAGTACTAAATTC+TGG 0.369352 6_1:+94585591 Msa0899460:CDS
TCTGAAAGTTATGAATCTTA+TGG 0.371782 6_1:+94588614 Msa0899460:CDS
GGTTATCGTTGGCATAAGTA+TGG 0.380213 6_1:+94587657 Msa0899460:CDS
CCTAAATATCATTCATTACT+AGG 0.380869 6_1:-94588917 None:intergenic
TCGTTGGCTTCATGATTAAT+TGG 0.383142 6_1:-94588890 None:intergenic
AGTGTAGTACTTGACTTTGT+TGG 0.385433 6_1:-94588506 None:intergenic
TATGTAATTGTTTCATATGA+AGG 0.393620 6_1:+94588443 Msa0899460:CDS
ATCCATTAGGCTGTTGTTGA+TGG 0.395630 6_1:+94587064 Msa0899460:intron
CAAGTTACAAATACAACTAT+TGG 0.398555 6_1:+94587349 Msa0899460:CDS
AAGCAACATCATTCCTTCAA+TGG 0.416911 6_1:-94587386 None:intergenic
CAACTCCAGAATTTAGTACT+TGG 0.423817 6_1:-94585596 None:intergenic
TTGGATGTTGAACTTCATCT+TGG 0.424960 6_1:-94587120 None:intergenic
TGTGAGAAAACAGGTGGAAA+GGG 0.431043 6_1:+94588403 Msa0899460:CDS
TCCTTCTCCCGATTATTCTC+AGG 0.437382 6_1:+94585674 Msa0899460:CDS
GATGGTTTCCACATGGCAAC+GGG 0.443847 6_1:+94587082 Msa0899460:CDS
GCATCTTCACGATAGTTCAT+TGG 0.451177 6_1:-94587268 None:intergenic
CAAGCTGTTCCCAGTATTGG+TGG 0.453491 6_1:+94588767 Msa0899460:CDS
ATCAGCTGCAACAACTTCTT+GGG 0.455443 6_1:-94587296 None:intergenic
TCTCAAGCTGTTCCCAGTAT+TGG 0.455665 6_1:+94588764 Msa0899460:CDS
GGTGAGGAGGTGTGAAAGGT+TGG 0.471015 6_1:-94588589 None:intergenic
GGTGTGAAAGGTTGGGTCAT+AGG 0.474536 6_1:-94588581 None:intergenic
TTCCACATGGCAACGGGAGG+AGG 0.481747 6_1:+94587088 Msa0899460:CDS
TTATTAACCATGTTCAAGAA+AGG 0.482422 6_1:-94588665 None:intergenic
TTTCCAACAACACTTGATCA+AGG 0.493003 6_1:+94587157 Msa0899460:CDS
GCTTGAGAGGCAGCAATTGA+AGG 0.494366 6_1:-94588749 None:intergenic
TTGATCAAGTGTTGTTGGAA+AGG 0.495068 6_1:-94587155 None:intergenic
ATTGGTGTAGCACCTTCAAA+AGG 0.502923 6_1:-94588872 None:intergenic
CTTATGGTAAGAACTGTACT+TGG 0.502973 6_1:+94588630 Msa0899460:CDS
TAATAATCCTTTCTTGAACA+TGG 0.506250 6_1:+94588658 Msa0899460:CDS
GTACTTGATCGATTTAAATG+AGG 0.506847 6_1:+94585647 Msa0899460:CDS
TGTCCTTGATCAAGTGTTGT+TGG 0.508287 6_1:-94587160 None:intergenic
GTTGAAGCAAGTTCCATTGA+AGG 0.510335 6_1:+94587373 Msa0899460:CDS
GTTGTTGTCGTCGTCGTCCA+TGG 0.510749 6_1:-94585556 None:intergenic
GCTAAACGCTGAAATTCTAA+AGG 0.517982 6_1:+94587228 Msa0899460:CDS
CATAATGATACTAGTGCTAG+TGG 0.520978 6_1:+94587412 Msa0899460:CDS
AACCTGTAATGTGAGAAAAC+AGG 0.528589 6_1:+94588394 Msa0899460:CDS
AATGAAGACAAAGTGAATGA+TGG 0.529985 6_1:+94587636 Msa0899460:CDS
GTGAGGAGGTGTGAAAGGTT+GGG 0.531143 6_1:-94588588 None:intergenic
CACCTATATGTCTCATACCA+TGG 0.531735 6_1:+94585539 None:intergenic
ATGTGAGAAAACAGGTGGAA+AGG 0.535021 6_1:+94588402 Msa0899460:CDS
AAATCATGAAGTTCTGGTAG+TGG 0.536148 6_1:-94588806 None:intergenic
TGATGGTTTCCACATGGCAA+CGG 0.539953 6_1:+94587081 Msa0899460:CDS
ATATATACCTGAGAATAATC+GGG 0.550091 6_1:-94585681 None:intergenic
TGTCCATTAATATATCCATA+AGG 0.552023 6_1:-94588701 None:intergenic
AATACTGGGAACAGCTTGAG+AGG 0.558169 6_1:-94588762 None:intergenic
TCATGAAGTTCTGGTAGTGG+TGG 0.567685 6_1:-94588803 None:intergenic
GAGCGGTGAGGAGGTGTGAA+AGG 0.568345 6_1:-94588593 None:intergenic
TTCATTACTAGGACTGTCGT+TGG 0.572830 6_1:-94588906 None:intergenic
AAATTCTGGAGTTGATTGCT+CGG 0.577016 6_1:+94585605 Msa0899460:CDS
TGGGTCATAGGCAATGCAAA+AGG 0.578767 6_1:-94588569 None:intergenic
AAGGAAATGCTAAATACCCT+AGG 0.580382 6_1:+94587694 Msa0899460:CDS
ATTTGAAATCCACCAATACT+GGG 0.584480 6_1:-94588776 None:intergenic
GCAACATTTATCATGGTGCA+AGG 0.584736 6_1:-94587585 None:intergenic
GAAATTCTAAAGGCTAGGAA+AGG 0.587867 6_1:+94587238 Msa0899460:CDS
ACGCTGAAATTCTAAAGGCT+AGG 0.591343 6_1:+94587233 Msa0899460:CDS
TTGATTGCTCGGCTATAAGG+AGG 0.594643 6_1:+94585616 Msa0899460:CDS
ACCTGAGAATAATCGGGAGA+AGG 0.596196 6_1:-94585675 None:intergenic
TAATTGCATTACTTTGCACA+TGG 0.597072 6_1:-94587204 None:intergenic
TATGGACGCAAGGAGATCAA+AGG 0.600725 6_1:+94587675 Msa0899460:CDS
TGCATTATAGGGGATACTAC+AGG 0.601431 6_1:+94588360 Msa0899460:intron
CACCTCCTCCCGTTGCCATG+TGG 0.601831 6_1:-94587090 None:intergenic
GCTGCAACAACTTCTTGGGT+AGG 0.614907 6_1:-94587292 None:intergenic
TTGGCATAAGTATGGACGCA+AGG 0.617304 6_1:+94587665 Msa0899460:CDS
CTAGTGGATCTTCTTCACAA+AGG 0.623228 6_1:+94587428 Msa0899460:CDS
TAACTTTCAGAGCGGTGAGG+AGG 0.625278 6_1:-94588602 None:intergenic
TATGAAGGCAAACATAATCA+CGG 0.626212 6_1:+94588458 Msa0899460:CDS
AAGTGAATGATGGTTATCGT+TGG 0.626452 6_1:+94587646 Msa0899460:CDS
GTCATAGGCAATGCAAAAGG+TGG 0.645286 6_1:-94588566 None:intergenic
CTGTAATGTGAGAAAACAGG+TGG 0.647364 6_1:+94588397 Msa0899460:CDS
CAACATTTATCATGGTGCAA+GGG 0.652471 6_1:-94587584 None:intergenic
ATATCCATAAGGCATCATCA+TGG 0.655849 6_1:-94588690 None:intergenic
GGTTTCCACATGGCAACGGG+AGG 0.656503 6_1:+94587085 Msa0899460:CDS
TGATTGCTCGGCTATAAGGA+GGG 0.663653 6_1:+94585617 Msa0899460:CDS
TGTTGTTGATGGTTTCCACA+TGG 0.683427 6_1:+94587075 Msa0899460:CDS
ACAACACTTGATCAAGGACA+TGG 0.685805 6_1:+94587163 Msa0899460:CDS
TCATAACTTTCAGAGCGGTG+AGG 0.687777 6_1:-94588605 None:intergenic
AAGATTCATAACTTTCAGAG+CGG 0.728852 6_1:-94588610 None:intergenic
CACTGACAACAGTAACACGT+AGG 0.735467 6_1:+94588525 Msa0899460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAAATAATAAATTT+TGG - chr6_1:94588186-94588205 None:intergenic 0.0%
!! TATTATTATATAATACATGT+TGG - chr6_1:94586027-94586046 None:intergenic 10.0%
!!! ATATAAATTTTACTTTTCAA+GGG - chr6_1:94586137-94586156 None:intergenic 10.0%
!!! AATATAAATTTTACTTTTCA+AGG - chr6_1:94586138-94586157 None:intergenic 10.0%
!!! TATTATATTTGCTATATTAT+TGG - chr6_1:94586630-94586649 None:intergenic 10.0%
!!! AAATTTGGATTAGTTTATAA+TGG - chr6_1:94585840-94585859 None:intergenic 15.0%
!! AATTTCCTATTGAAAAATAA+TGG - chr6_1:94585919-94585938 None:intergenic 15.0%
!! AAATATTTAAACATGACAAA+CGG + chr6_1:94585975-94585994 Msa0899460:intron 15.0%
!! TATTTAATTATTAAGGAAGA+GGG - chr6_1:94586191-94586210 None:intergenic 15.0%
!! ATATTTAATTATTAAGGAAG+AGG - chr6_1:94586192-94586211 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG - chr6_1:94586198-94586217 None:intergenic 15.0%
!!! ATATTTTTATGATACATAAG+AGG + chr6_1:94586245-94586264 Msa0899460:intron 15.0%
!!! TATTTTTATGATACATAAGA+GGG + chr6_1:94586246-94586265 Msa0899460:intron 15.0%
!!! TAAAAATGTTACATTGTTTT+TGG - chr6_1:94586769-94586788 None:intergenic 15.0%
!!! AAACAATGTAACATTTTTAT+AGG + chr6_1:94586770-94586789 Msa0899460:intron 15.0%
!! TTTATAGGTAAATTTATTGA+AGG + chr6_1:94586785-94586804 Msa0899460:intron 15.0%
!! TTATAGGTAAATTTATTGAA+GGG + chr6_1:94586786-94586805 Msa0899460:intron 15.0%
!! TAGTATAAATTATAGTTTCA+TGG + chr6_1:94586858-94586877 Msa0899460:intron 15.0%
!! AGTATAAATTATAGTTTCAT+GGG + chr6_1:94586859-94586878 Msa0899460:intron 15.0%
!! TAAAAAAAATCATTTGATGA+TGG - chr6_1:94586914-94586933 None:intergenic 15.0%
!! TATTTGTTTCAAACAAAAAA+TGG + chr6_1:94587480-94587499 Msa0899460:intron 15.0%
!! AAACTTCTAATTATAAAGAA+CGG - chr6_1:94587892-94587911 None:intergenic 15.0%
!! CAATTTGATATTAAATTTGT+GGG + chr6_1:94588120-94588139 Msa0899460:intron 15.0%
!! ATTAATATTGTATGCATTAT+AGG + chr6_1:94588348-94588367 Msa0899460:intron 15.0%
!! TTAATATTGTATGCATTATA+GGG + chr6_1:94588349-94588368 Msa0899460:intron 15.0%
!! TATGAAACAATTACATATTT+CGG - chr6_1:94588440-94588459 None:intergenic 15.0%
!! TATATATACCTGAGAATAAT+CGG - chr6_1:94585685-94585704 None:intergenic 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr6_1:94586350-94586369 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr6_1:94586349-94586368 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr6_1:94586348-94586367 None:intergenic 20.0%
!!! ATTTTTATGATACATAAGAG+GGG + chr6_1:94586247-94586266 Msa0899460:intron 20.0%
!!! TCTAATATGTTTTGAATAAG+AGG + chr6_1:94586318-94586337 Msa0899460:intron 20.0%
!!! CTAATATGTTTTGAATAAGA+GGG + chr6_1:94586319-94586338 Msa0899460:intron 20.0%
!!! TAATATGTTTTGAATAAGAG+GGG + chr6_1:94586320-94586339 Msa0899460:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr6_1:94586348-94586367 Msa0899460:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr6_1:94586349-94586368 Msa0899460:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr6_1:94586350-94586369 Msa0899460:intron 20.0%
!! CTACATATAAAAAGAATACA+TGG - chr6_1:94586841-94586860 None:intergenic 20.0%
!! AACTTCTAATTATAAAGAAC+GGG - chr6_1:94587891-94587910 None:intergenic 20.0%
!!! TATACTTTGAGATGATTTTA+AGG + chr6_1:94588044-94588063 Msa0899460:intron 20.0%
!! GCAATTTGATATTAAATTTG+TGG + chr6_1:94588119-94588138 Msa0899460:intron 20.0%
!! ATGATGTAAATATTGTTCAT+TGG + chr6_1:94588269-94588288 Msa0899460:intron 20.0%
!! AATATTGTTCATTGGAATTA+AGG + chr6_1:94588277-94588296 Msa0899460:intron 20.0%
!! ATATTTATGTATATGCTACA+TGG - chr6_1:94588311-94588330 None:intergenic 20.0%
!! TAATATTGTATGCATTATAG+GGG + chr6_1:94588350-94588369 Msa0899460:intron 20.0%
!! TATGTAATTGTTTCATATGA+AGG + chr6_1:94588443-94588462 Msa0899460:CDS 20.0%
!!! GATTTTTTTTTGTGATGATA+GGG - chr6_1:94588487-94588506 None:intergenic 20.0%
!! TTCAAGAAAGGATTATTATT+AGG - chr6_1:94588656-94588675 None:intergenic 20.0%
! ATATATACCTGAGAATAATC+GGG - chr6_1:94585684-94585703 None:intergenic 25.0%
!!! TTGATCATTTTTTGTTGCAT+TGG - chr6_1:94585721-94585740 None:intergenic 25.0%
! GGTAGAAAATGATGTAAATT+TGG - chr6_1:94585855-94585874 None:intergenic 25.0%
!! TTTTAATAATCACATAAGCG+AGG - chr6_1:94585879-94585898 None:intergenic 25.0%
!!! AAATTTTACTTTTCAAGGGA+GGG - chr6_1:94586133-94586152 None:intergenic 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG - chr6_1:94586134-94586153 None:intergenic 25.0%
! GTAATTCAAGCATCTTATAA+GGG - chr6_1:94586166-94586185 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG - chr6_1:94586167-94586186 None:intergenic 25.0%
! AAACTCTTATCTTTCTTATG+CGG + chr6_1:94586651-94586670 Msa0899460:intron 25.0%
!! GGAAAGGAAATATTTGAAAT+TGG - chr6_1:94587142-94587161 None:intergenic 25.0%
! CAAGTTACAAATACAACTAT+TGG + chr6_1:94587349-94587368 Msa0899460:CDS 25.0%
! AAAAGGTAAATGATTACCTA+GGG - chr6_1:94587713-94587732 None:intergenic 25.0%
! AAAAAGGTAAATGATTACCT+AGG - chr6_1:94587714-94587733 None:intergenic 25.0%
! ATATATGATTCAAGACATCA+TGG + chr6_1:94587820-94587839 Msa0899460:intron 25.0%
! ACTTCTAATTATAAAGAACG+GGG - chr6_1:94587890-94587909 None:intergenic 25.0%
! ATAAATTTATGTCACTGTCT+TGG - chr6_1:94587937-94587956 None:intergenic 25.0%
! GGTGAAAAATCGATAATTAA+GGG - chr6_1:94588165-94588184 None:intergenic 25.0%
! TGGTGAAAAATCGATAATTA+AGG - chr6_1:94588166-94588185 None:intergenic 25.0%
!!! GGATTTTTTTTTGTGATGAT+AGG - chr6_1:94588488-94588507 None:intergenic 25.0%
! TCTGAAAGTTATGAATCTTA+TGG + chr6_1:94588614-94588633 Msa0899460:CDS 25.0%
! TAATAATCCTTTCTTGAACA+TGG + chr6_1:94588658-94588677 Msa0899460:CDS 25.0%
! TTATTAACCATGTTCAAGAA+AGG - chr6_1:94588668-94588687 None:intergenic 25.0%
! ATGCCTTATGGATATATTAA+TGG + chr6_1:94588698-94588717 Msa0899460:CDS 25.0%
! TGTCCATTAATATATCCATA+AGG - chr6_1:94588704-94588723 None:intergenic 25.0%
!! ATGATTTTCTTCGACTTAAT+GGG + chr6_1:94588822-94588841 Msa0899460:CDS 25.0%
! GTACTTGATCGATTTAAATG+AGG + chr6_1:94585647-94585666 Msa0899460:CDS 30.0%
!! ACGCACCATTATTTTTCAAT+AGG + chr6_1:94585911-94585930 Msa0899460:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr6_1:94586354-94586373 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr6_1:94586353-94586372 None:intergenic 30.0%
!! AATTTTACTTTTCAAGGGAG+GGG - chr6_1:94586132-94586151 None:intergenic 30.0%
ATGTAATTCAAGCTTCTCTT+AGG + chr6_1:94586276-94586295 Msa0899460:intron 30.0%
TGTAATTCAAGCTTCTCTTA+GGG + chr6_1:94586277-94586296 Msa0899460:intron 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr6_1:94586353-94586372 Msa0899460:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG + chr6_1:94586354-94586373 Msa0899460:intron 30.0%
TGTAATTCAAGCATCTTTGA+GGG + chr6_1:94586380-94586399 Msa0899460:intron 30.0%
GTTGTTGGTGTAATTGAAAA+AGG - chr6_1:94586733-94586752 None:intergenic 30.0%
GTAATTCGATTGAATCCATT+AGG + chr6_1:94587051-94587070 Msa0899460:intron 30.0%
TAATTGCATTACTTTGCACA+TGG - chr6_1:94587207-94587226 None:intergenic 30.0%
!! TGTAACTTGTTGTTCATCTA+AGG - chr6_1:94587338-94587357 None:intergenic 30.0%
TCCTAATTATTATGCAATGC+AGG + chr6_1:94587526-94587545 Msa0899460:intron 30.0%
TCCTGCATTGCATAATAATT+AGG - chr6_1:94587530-94587549 None:intergenic 30.0%
! TCAATTCTGAACACTACTTT+TGG - chr6_1:94587612-94587631 None:intergenic 30.0%
AATGAAGACAAAGTGAATGA+TGG + chr6_1:94587636-94587655 Msa0899460:CDS 30.0%
! TAATCATTTACCTTTTTCCC+TGG + chr6_1:94587717-94587736 Msa0899460:intron 30.0%
CCTCTTTCATATATACACTA+AGG - chr6_1:94587799-94587818 None:intergenic 30.0%
CCTTAGTGTATATATGAAAG+AGG + chr6_1:94587796-94587815 Msa0899460:intron 30.0%
CTTCTAATTATAAAGAACGG+GGG - chr6_1:94587889-94587908 None:intergenic 30.0%
! GTCACATTTGAGACAATAAA+CGG - chr6_1:94587973-94587992 None:intergenic 30.0%
!! ACGATAAATCACTTTTAGCA+GGG - chr6_1:94588088-94588107 None:intergenic 30.0%
!! TACGATAAATCACTTTTAGC+AGG - chr6_1:94588089-94588108 None:intergenic 30.0%
TATGAAGGCAAACATAATCA+CGG + chr6_1:94588458-94588477 Msa0899460:CDS 30.0%
AAGATTCATAACTTTCAGAG+CGG - chr6_1:94588613-94588632 None:intergenic 30.0%
! ATTTGAAATCCACCAATACT+GGG - chr6_1:94588779-94588798 None:intergenic 30.0%
! TATTTGAAATCCACCAATAC+TGG - chr6_1:94588780-94588799 None:intergenic 30.0%
! CATGATTTTCTTCGACTTAA+TGG + chr6_1:94588821-94588840 Msa0899460:CDS 30.0%
GACAACAACAACAACAACAA+GGG + chr6_1:94585570-94585589 Msa0899460:CDS 35.0%
GGAAACCAAGTACTAAATTC+TGG + chr6_1:94585591-94585610 Msa0899460:CDS 35.0%
CAACTCCAGAATTTAGTACT+TGG - chr6_1:94585599-94585618 None:intergenic 35.0%
!! AAATTCTGGAGTTGATTGCT+CGG + chr6_1:94585605-94585624 Msa0899460:CDS 35.0%
TAATAATCACATAAGCGAGG+TGG - chr6_1:94585876-94585895 None:intergenic 35.0%
! TGACAAACGGATTCCTAATT+AGG + chr6_1:94585988-94586007 Msa0899460:intron 35.0%
TACATGTTGGATTGAATCGA+CGG - chr6_1:94586014-94586033 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr6_1:94586355-94586374 None:intergenic 35.0%
TTCAAGCATCTTATAAGGGA+GGG - chr6_1:94586162-94586181 None:intergenic 35.0%
ATTCAAGCATCTTATAAGGG+AGG - chr6_1:94586163-94586182 None:intergenic 35.0%
GTAATTCAAGCTTCTCTTAG+GGG + chr6_1:94586278-94586297 Msa0899460:intron 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG + chr6_1:94586355-94586374 Msa0899460:intron 35.0%
CTGTAATTCAAGCATCTTTG+AGG + chr6_1:94586379-94586398 Msa0899460:intron 35.0%
GTAATTCAAGCATCTTTGAG+GGG + chr6_1:94586381-94586400 Msa0899460:intron 35.0%
!! GGTCATATTTGTTGTGTTGT+TGG - chr6_1:94586748-94586767 None:intergenic 35.0%
TTGGATGTTGAACTTCATCT+TGG - chr6_1:94587123-94587142 None:intergenic 35.0%
! TTGATCAAGTGTTGTTGGAA+AGG - chr6_1:94587158-94587177 None:intergenic 35.0%
TTTCCAACAACACTTGATCA+AGG + chr6_1:94587157-94587176 Msa0899460:CDS 35.0%
GCTAAACGCTGAAATTCTAA+AGG + chr6_1:94587228-94587247 Msa0899460:CDS 35.0%
! GAAATTCTAAAGGCTAGGAA+AGG + chr6_1:94587238-94587257 Msa0899460:CDS 35.0%
AAGCAACATCATTCCTTCAA+TGG - chr6_1:94587389-94587408 None:intergenic 35.0%
CATAATGATACTAGTGCTAG+TGG + chr6_1:94587412-94587431 Msa0899460:CDS 35.0%
TTATTATGCAATGCAGGAAG+AGG + chr6_1:94587532-94587551 Msa0899460:intron 35.0%
CAACATTTATCATGGTGCAA+GGG - chr6_1:94587587-94587606 None:intergenic 35.0%
! TTTTGGCGCAACATTTATCA+TGG - chr6_1:94587595-94587614 None:intergenic 35.0%
AAGTGAATGATGGTTATCGT+TGG + chr6_1:94587646-94587665 Msa0899460:CDS 35.0%
AAGGAAATGCTAAATACCCT+AGG + chr6_1:94587694-94587713 Msa0899460:CDS 35.0%
!! CGATAAATCACTTTTAGCAG+GGG - chr6_1:94588087-94588106 None:intergenic 35.0%
AACCTGTAATGTGAGAAAAC+AGG + chr6_1:94588394-94588413 Msa0899460:CDS 35.0%
AGTGTAGTACTTGACTTTGT+TGG - chr6_1:94588509-94588528 None:intergenic 35.0%
CTTATGGTAAGAACTGTACT+TGG + chr6_1:94588630-94588649 Msa0899460:CDS 35.0%
! AATACCATGATGATGCCTTA+TGG + chr6_1:94588686-94588705 Msa0899460:CDS 35.0%
! ATATCCATAAGGCATCATCA+TGG - chr6_1:94588693-94588712 None:intergenic 35.0%
! AAATCATGAAGTTCTGGTAG+TGG - chr6_1:94588809-94588828 None:intergenic 35.0%
CGAAGAAAATCATGAAGTTC+TGG - chr6_1:94588815-94588834 None:intergenic 35.0%
! GCTACAATGTTTCCTTTTGA+AGG + chr6_1:94588860-94588879 Msa0899460:CDS 35.0%
!! TCGTTGGCTTCATGATTAAT+TGG - chr6_1:94588893-94588912 None:intergenic 35.0%
CGACAACAACAACAACAACA+AGG + chr6_1:94585569-94585588 Msa0899460:CDS 40.0%
! TTTTTGTTGCATTGGAGCAG+AGG - chr6_1:94585713-94585732 None:intergenic 40.0%
ATTGAATCGACGGCCTAATT+AGG - chr6_1:94586004-94586023 None:intergenic 40.0%
GTAACTCAAGCTTCCTTGAA+GGG - chr6_1:94586076-94586095 None:intergenic 40.0%
TGTAACTCAAGCTTCCTTGA+AGG - chr6_1:94586077-94586096 None:intergenic 40.0%
TCAAGCATCTTATAAGGGAG+GGG - chr6_1:94586161-94586180 None:intergenic 40.0%
!! TGTTTTGAATAAGAGGGGAG+TGG + chr6_1:94586325-94586344 Msa0899460:intron 40.0%
ATCCATTAGGCTGTTGTTGA+TGG + chr6_1:94587064-94587083 Msa0899460:intron 40.0%
AACCATCAACAACAGCCTAA+TGG - chr6_1:94587069-94587088 None:intergenic 40.0%
!! TGTTGTTGATGGTTTCCACA+TGG + chr6_1:94587075-94587094 Msa0899460:CDS 40.0%
! TGTCCTTGATCAAGTGTTGT+TGG - chr6_1:94587163-94587182 None:intergenic 40.0%
ACAACACTTGATCAAGGACA+TGG + chr6_1:94587163-94587182 Msa0899460:CDS 40.0%
! ACGCTGAAATTCTAAAGGCT+AGG + chr6_1:94587233-94587252 Msa0899460:CDS 40.0%
GCATCTTCACGATAGTTCAT+TGG - chr6_1:94587271-94587290 None:intergenic 40.0%
ATCAGCTGCAACAACTTCTT+GGG - chr6_1:94587299-94587318 None:intergenic 40.0%
TGCAGCTGATGAAGCAAAAA+CGG + chr6_1:94587309-94587328 Msa0899460:CDS 40.0%
GTTGAAGCAAGTTCCATTGA+AGG + chr6_1:94587373-94587392 Msa0899460:CDS 40.0%
! CTAGTGGATCTTCTTCACAA+AGG + chr6_1:94587428-94587447 Msa0899460:CDS 40.0%
GCAACATTTATCATGGTGCA+AGG - chr6_1:94587588-94587607 None:intergenic 40.0%
GGTTATCGTTGGCATAAGTA+TGG + chr6_1:94587657-94587676 Msa0899460:CDS 40.0%
! ACATACTTGCATTGACACCA+GGG - chr6_1:94587737-94587756 None:intergenic 40.0%
TGCATTATAGGGGATACTAC+AGG + chr6_1:94588360-94588379 Msa0899460:intron 40.0%
! CACCTGTTTTCTCACATTAC+AGG - chr6_1:94588399-94588418 None:intergenic 40.0%
CTGTAATGTGAGAAAACAGG+TGG + chr6_1:94588397-94588416 Msa0899460:CDS 40.0%
ATGTGAGAAAACAGGTGGAA+AGG + chr6_1:94588402-94588421 Msa0899460:CDS 40.0%
TGTGAGAAAACAGGTGGAAA+GGG + chr6_1:94588403-94588422 Msa0899460:CDS 40.0%
ATTGGTGTAGCACCTTCAAA+AGG - chr6_1:94588875-94588894 None:intergenic 40.0%
TTCATTACTAGGACTGTCGT+TGG - chr6_1:94588909-94588928 None:intergenic 40.0%
! GAGTTGATTGCTCGGCTATA+AGG + chr6_1:94585613-94585632 Msa0899460:CDS 45.0%
TTGATTGCTCGGCTATAAGG+AGG + chr6_1:94585616-94585635 Msa0899460:CDS 45.0%
TGATTGCTCGGCTATAAGGA+GGG + chr6_1:94585617-94585636 Msa0899460:CDS 45.0%
TCCTTCTCCCGATTATTCTC+AGG + chr6_1:94585674-94585693 Msa0899460:CDS 45.0%
ACCTGAGAATAATCGGGAGA+AGG - chr6_1:94585678-94585697 None:intergenic 45.0%
ATTCAAGCTTCTCTTAGGGG+AGG + chr6_1:94586281-94586300 Msa0899460:intron 45.0%
TTCAAGCTTCTCTTAGGGGA+GGG + chr6_1:94586282-94586301 Msa0899460:intron 45.0%
! ATTCAAGCATCTTTGAGGGG+AGG + chr6_1:94586384-94586403 Msa0899460:intron 45.0%
TGATGGTTTCCACATGGCAA+CGG + chr6_1:94587081-94587100 Msa0899460:CDS 45.0%
CATCAGCTGCAACAACTTCT+TGG - chr6_1:94587300-94587319 None:intergenic 45.0%
TTGGCATAAGTATGGACGCA+AGG + chr6_1:94587665-94587684 Msa0899460:CDS 45.0%
TATGGACGCAAGGAGATCAA+AGG + chr6_1:94587675-94587694 Msa0899460:CDS 45.0%
! TGCATTGACACCAGGGAAAA+AGG - chr6_1:94587730-94587749 None:intergenic 45.0%
! CACATACTTGCATTGACACC+AGG - chr6_1:94587738-94587757 None:intergenic 45.0%
CACTGACAACAGTAACACGT+AGG + chr6_1:94588525-94588544 Msa0899460:CDS 45.0%
GTCATAGGCAATGCAAAAGG+TGG - chr6_1:94588569-94588588 None:intergenic 45.0%
TGGGTCATAGGCAATGCAAA+AGG - chr6_1:94588572-94588591 None:intergenic 45.0%
TCATAACTTTCAGAGCGGTG+AGG - chr6_1:94588608-94588627 None:intergenic 45.0%
AATACTGGGAACAGCTTGAG+AGG - chr6_1:94588765-94588784 None:intergenic 45.0%
TCTCAAGCTGTTCCCAGTAT+TGG + chr6_1:94588764-94588783 Msa0899460:CDS 45.0%
!! TCATGAAGTTCTGGTAGTGG+TGG - chr6_1:94588806-94588825 None:intergenic 45.0%
ATTAGACTCCCCTCCCTTCA+AGG + chr6_1:94586060-94586079 Msa0899460:intron 50.0%
TCAAGCTTCCTTGAAGGGAG+GGG - chr6_1:94586071-94586090 None:intergenic 50.0%
CTCAAGCTTCCTTGAAGGGA+GGG - chr6_1:94586072-94586091 None:intergenic 50.0%
ACTCAAGCTTCCTTGAAGGG+AGG - chr6_1:94586073-94586092 None:intergenic 50.0%
TCAAGCTTCTCTTAGGGGAG+GGG + chr6_1:94586283-94586302 Msa0899460:intron 50.0%
GATGGTTTCCACATGGCAAC+GGG + chr6_1:94587082-94587101 Msa0899460:CDS 50.0%
GCTGCAACAACTTCTTGGGT+AGG - chr6_1:94587295-94587314 None:intergenic 50.0%
GGTGTGAAAGGTTGGGTCAT+AGG - chr6_1:94588584-94588603 None:intergenic 50.0%
! GTGAGGAGGTGTGAAAGGTT+GGG - chr6_1:94588591-94588610 None:intergenic 50.0%
TAACTTTCAGAGCGGTGAGG+AGG - chr6_1:94588605-94588624 None:intergenic 50.0%
GCTTGAGAGGCAGCAATTGA+AGG - chr6_1:94588752-94588771 None:intergenic 50.0%
! CAAGCTGTTCCCAGTATTGG+TGG + chr6_1:94588767-94588786 Msa0899460:CDS 50.0%
GTTGTTGTCGTCGTCGTCCA+TGG - chr6_1:94585559-94585578 None:intergenic 55.0%
! GGTGAGGAGGTGTGAAAGGT+TGG - chr6_1:94588592-94588611 None:intergenic 55.0%
GGTTTCCACATGGCAACGGG+AGG + chr6_1:94587085-94587104 Msa0899460:CDS 60.0%
TTCCACATGGCAACGGGAGG+AGG + chr6_1:94587088-94587107 Msa0899460:CDS 60.0%
!! ACGGGGGCGTCAGTAGTTGT+TGG - chr6_1:94587873-94587892 None:intergenic 60.0%
! GAGCGGTGAGGAGGTGTGAA+AGG - chr6_1:94588596-94588615 None:intergenic 60.0%
CACCTCCTCCCGTTGCCATG+TGG - chr6_1:94587093-94587112 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 94585546 94588931 94585546 ID=Msa0899460;Name=Msa0899460
chr6_1 mRNA 94585546 94588931 94585546 ID=Msa0899460-mRNA-1;Parent=Msa0899460;Name=Msa0899460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|418
chr6_1 exon 94585546 94585695 94585546 ID=Msa0899460-mRNA-1:exon:16136;Parent=Msa0899460-mRNA-1
chr6_1 exon 94587073 94587449 94587073 ID=Msa0899460-mRNA-1:exon:16137;Parent=Msa0899460-mRNA-1
chr6_1 exon 94587548 94587715 94587548 ID=Msa0899460-mRNA-1:exon:16138;Parent=Msa0899460-mRNA-1
chr6_1 exon 94588370 94588931 94588370 ID=Msa0899460-mRNA-1:exon:16139;Parent=Msa0899460-mRNA-1
chr6_1 CDS 94585546 94585695 94585546 ID=Msa0899460-mRNA-1:cds;Parent=Msa0899460-mRNA-1
chr6_1 CDS 94587073 94587449 94587073 ID=Msa0899460-mRNA-1:cds;Parent=Msa0899460-mRNA-1
chr6_1 CDS 94587548 94587715 94587548 ID=Msa0899460-mRNA-1:cds;Parent=Msa0899460-mRNA-1
chr6_1 CDS 94588370 94588931 94588370 ID=Msa0899460-mRNA-1:cds;Parent=Msa0899460-mRNA-1
Gene Sequence

>Msa0899460

ATGTCTCATACCATGGACGACGACGACAACAACAACAACAACAAGGGAAACCAAGTACTAAATTCTGGAGTTGATTGCTCGGCTATAAGGAGGGAGAAAAAGTACTTGATCGATTTAAATGAGGTTTGTCCTTCTCCCGATTATTCTCAGGCTGTTGTTGATGGTTTCCACATGGCAACGGGAGGAGGTGTAGAACTCCAAGATGAAGTTCAACATCCAATTTCAAATATTTCCTTTCCAACAACACTTGATCAAGGACATGGTGCAGAAAAAGAACAAGTCCATGTGCAAAGTAATGCAATTACGCTAAACGCTGAAATTCTAAAGGCTAGGAAAGGAAAGATGCCAATGAACTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGAAGAGGAAAACTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTCAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAGAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATCACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAACACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTTAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTACAATGTTTCCTTTTGAAGGTGCTACACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA
Protein sequence

>Msa0899460

MSHTMDDDDNNNNNKGNQVLNSGVDCSAIRREKKYLIDLNEVCPSPDYSQAVVDGFHMATGGGVELQDEVQHPISNISFPTTLDQGHGAEKEQVHVQSNAITLNAEILKARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKTDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVTRRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAATMFPFEGATPINHEANDSPSNE*