Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899890 | XP_003620600.2 | 93.968 | 630 | 14 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899890 | sp|Q9SZD1|TCX5_ARATH | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899890 | A0A0C3VZM0 | 93.968 | 630 | 14 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1207 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0899890 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899890 | MtrunA17_Chr6g0485811 | 93.968 | 630 | 14 | 2 | 1 | 630 | 1 | 606 | 0.0 | 1207 |
| Msa0899890 | MtrunA17_Chr8g0390351 | 65.789 | 646 | 155 | 12 | 1 | 631 | 1 | 595 | 0.0 | 791 |
| Msa0899890 | MtrunA17_Chr3g0139951 | 48.000 | 350 | 157 | 11 | 51 | 385 | 61 | 400 | 1.59e-85 | 273 |
| Msa0899890 | MtrunA17_Chr5g0394661 | 42.073 | 164 | 92 | 2 | 96 | 258 | 456 | 617 | 1.30e-30 | 127 |
| Msa0899890 | MtrunA17_Chr1g0149101 | 47.727 | 132 | 60 | 3 | 130 | 255 | 498 | 626 | 4.38e-29 | 123 |
| Msa0899890 | MtrunA17_Chr1g0205031 | 38.211 | 123 | 67 | 3 | 141 | 258 | 416 | 534 | 1.63e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899890 | AT4G29000.1 | 56.144 | 529 | 183 | 15 | 43 | 537 | 21 | 534 | 0.0 | 532 |
| Msa0899890 | AT2G20110.3 | 51.976 | 506 | 191 | 13 | 45 | 537 | 21 | 487 | 6.95e-166 | 485 |
| Msa0899890 | AT2G20110.1 | 51.976 | 506 | 191 | 13 | 45 | 537 | 21 | 487 | 1.52e-165 | 485 |
| Msa0899890 | AT2G20110.2 | 51.267 | 513 | 191 | 14 | 45 | 537 | 21 | 494 | 1.34e-162 | 478 |
| Msa0899890 | AT5G25790.1 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 1.13e-103 | 322 |
| Msa0899890 | AT5G25790.2 | 42.152 | 446 | 199 | 12 | 90 | 524 | 51 | 448 | 2.02e-103 | 323 |
| Msa0899890 | AT5G25790.3 | 41.928 | 446 | 196 | 13 | 90 | 524 | 51 | 444 | 6.17e-101 | 315 |
| Msa0899890 | AT3G16160.1 | 30.935 | 417 | 180 | 13 | 113 | 518 | 43 | 362 | 3.26e-42 | 157 |
| Msa0899890 | AT3G22760.2 | 42.289 | 201 | 83 | 7 | 93 | 266 | 147 | 341 | 8.78e-36 | 141 |
| Msa0899890 | AT3G22760.1 | 42.289 | 201 | 83 | 7 | 93 | 266 | 270 | 464 | 1.47e-35 | 142 |
| Msa0899890 | AT3G22780.1 | 34.016 | 244 | 135 | 6 | 52 | 274 | 312 | 550 | 1.91e-33 | 136 |
| Msa0899890 | AT4G14770.1 | 35.556 | 225 | 120 | 6 | 52 | 259 | 289 | 505 | 2.13e-33 | 136 |
| Msa0899890 | AT4G14770.2 | 35.556 | 225 | 120 | 6 | 52 | 259 | 269 | 485 | 2.30e-33 | 136 |
| Msa0899890 | AT4G14770.3 | 35.556 | 225 | 120 | 6 | 52 | 259 | 270 | 486 | 2.36e-33 | 136 |
| Msa0899890 | AT3G04850.1 | 46.512 | 129 | 68 | 1 | 130 | 257 | 453 | 581 | 2.57e-30 | 127 |
Find 172 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGCTGCTCGCAATTT+TGG | 0.046264 | 6_1:-95302172 | None:intergenic |
| TTCTCTTACATCACCAATTT+TGG | 0.102587 | 6_1:+95299692 | Msa0899890:five_prime_UTR |
| TTGCACTGCCTTTGCTTCTT+TGG | 0.171967 | 6_1:-95301417 | None:intergenic |
| AGAGAGAAAGTGAGAGAAAA+AGG | 0.186835 | 6_1:-95299636 | None:intergenic |
| TCCGGATGAACAACATTCTT+TGG | 0.229319 | 6_1:-95299978 | None:intergenic |
| AAAATTGTTGGATCCAAAAT+TGG | 0.252570 | 6_1:-95299705 | None:intergenic |
| ATTGATACTGTAGCTGAAAA+TGG | 0.265617 | 6_1:+95305674 | Msa0899890:CDS |
| GCGGCAAATGCTGCCATAAC+TGG | 0.288463 | 6_1:+95303000 | Msa0899890:CDS |
| CAAGCTGCAAAGACGCTTGC+AGG | 0.309609 | 6_1:+95303811 | Msa0899890:CDS |
| CCTTCTTTCACTTCAAAGTT+AGG | 0.315523 | 6_1:-95301390 | None:intergenic |
| GAATTTGAAATTGTGAGTTT+TGG | 0.323848 | 6_1:+95299901 | Msa0899890:five_prime_UTR |
| TAAGGAGCTTTGTTCAGTTC+TGG | 0.332795 | 6_1:+95303774 | Msa0899890:CDS |
| TCAGTTCTGGTACTAGTATC+TGG | 0.333159 | 6_1:+95303787 | Msa0899890:CDS |
| TCTCAATAGAGTTATTACTA+TGG | 0.333741 | 6_1:+95304588 | Msa0899890:CDS |
| GCAACAGCAGGTGGTTCAAC+AGG | 0.346703 | 6_1:+95300139 | Msa0899890:CDS |
| TGCGGCTGCAACGGCGGCTG+CGG | 0.348875 | 6_1:+95300019 | Msa0899890:CDS |
| TTAGGTCTTGATCTTGGTTT+GGG | 0.348976 | 6_1:-95301372 | None:intergenic |
| GATCCAATCAACAATGAAAC+TGG | 0.349953 | 6_1:+95305449 | Msa0899890:CDS |
| TTTCCAGTTTCATTGTTGAT+TGG | 0.364933 | 6_1:-95305452 | None:intergenic |
| AAGTGAATTAGAGAATAAAA+AGG | 0.370167 | 6_1:+95305427 | Msa0899890:CDS |
| GTTAGGTCTTGATCTTGGTT+TGG | 0.377110 | 6_1:-95301373 | None:intergenic |
| AACACTCTTCTGTGAGGGTT+GGG | 0.378551 | 6_1:+95300243 | Msa0899890:CDS |
| AGAGACAAAGTGTTCTTCAT+TGG | 0.385382 | 6_1:+95305400 | Msa0899890:intron |
| ATTACTATGGGAGAGATAAA+TGG | 0.386685 | 6_1:+95304601 | Msa0899890:CDS |
| GCTGCCATAACTGGAGCTAT+TGG | 0.394392 | 6_1:+95303009 | Msa0899890:CDS |
| CTCAGGGAGCACGCGATAGC+AGG | 0.397812 | 6_1:+95302190 | Msa0899890:CDS |
| GTCGTAACCGTAACAAATTC+CGG | 0.402486 | 6_1:-95299996 | None:intergenic |
| CAAAATTGCGAGCAGCCCTC+AGG | 0.414226 | 6_1:+95302173 | Msa0899890:CDS |
| TAATAAATGTAGGAGGAGGC+TGG | 0.417625 | 6_1:+95302775 | Msa0899890:intron |
| GTGGAATTTGAACAATTTGA+AGG | 0.421018 | 6_1:+95299879 | Msa0899890:five_prime_UTR |
| CCGAAAAGACCGATGTCTCC+TGG | 0.421935 | 6_1:+95304394 | Msa0899890:CDS |
| AAATTGCGAAGATGTATTGC+AGG | 0.422987 | 6_1:-95304494 | None:intergenic |
| AGCATTCACAGTACTTCTTA+AGG | 0.425540 | 6_1:-95302855 | None:intergenic |
| TCAAAGTTAGGTCTTGATCT+TGG | 0.425628 | 6_1:-95301378 | None:intergenic |
| CTCAATAGAGTTATTACTAT+GGG | 0.427779 | 6_1:+95304589 | Msa0899890:CDS |
| ATCAAAGAAAAGAAAAGGTC+AGG | 0.431936 | 6_1:+95303059 | Msa0899890:CDS |
| CTGCAAGCGTCTTTGCAGCT+TGG | 0.434786 | 6_1:-95303810 | None:intergenic |
| TGTCCCGGCTTGCTAATTGA+TGG | 0.441456 | 6_1:-95303111 | None:intergenic |
| CGTGGTACAAATCCAACATT+AGG | 0.442565 | 6_1:+95303616 | Msa0899890:CDS |
| TCCAAAGAATGTTGTTCATC+CGG | 0.443750 | 6_1:+95299977 | Msa0899890:CDS |
| GTCCATCAAAATTAAAGTAC+AGG | 0.444356 | 6_1:+95303644 | Msa0899890:CDS |
| AATTAGCAAGCCGGGACAAC+AGG | 0.448943 | 6_1:+95303116 | Msa0899890:CDS |
| GAGTGTCACGGTGCAGAAAC+CGG | 0.453981 | 6_1:+95300163 | Msa0899890:CDS |
| GTCTGCACCGGCGTTGGCAC+CGG | 0.455906 | 6_1:-95300215 | None:intergenic |
| TCTGTCACTCCTTGTCCGTC+AGG | 0.456188 | 6_1:-95304517 | None:intergenic |
| GCATGGGTCGTTTGCCCGAT+GGG | 0.456405 | 6_1:-95304472 | None:intergenic |
| GGCAAACCACCCACTCCAAC+CGG | 0.458936 | 6_1:-95300182 | None:intergenic |
| TGAGGGAAGTGAAGAGAGAC+AGG | 0.459062 | 6_1:+95302933 | Msa0899890:CDS |
| CTTGCTAATTGATGGATCCT+TGG | 0.460693 | 6_1:-95303103 | None:intergenic |
| GAGAGACAGGCTTTGTTTCG+TGG | 0.462723 | 6_1:+95302946 | Msa0899890:CDS |
| TGACAGCTGCCTCTCCCATC+GGG | 0.464632 | 6_1:+95304458 | Msa0899890:CDS |
| GAACTGAACAAAGCTCCTTA+AGG | 0.466976 | 6_1:-95303771 | None:intergenic |
| CAAAGCTGCATTTCCACCTA+TGG | 0.469835 | 6_1:+95305526 | Msa0899890:CDS |
| TTTCAGCTACAGTATCAATA+GGG | 0.473556 | 6_1:-95305670 | None:intergenic |
| CATGGACTGCAAGAACTTTG+AGG | 0.474484 | 6_1:+95302915 | Msa0899890:CDS |
| GTTGGCACCGGTACCGGTAT+CGG | 0.477193 | 6_1:-95300203 | None:intergenic |
| CAACACTCTTCTGTGAGGGT+TGG | 0.479410 | 6_1:+95300242 | Msa0899890:CDS |
| ACCGGCGTTGGCACCGGTAC+CGG | 0.479675 | 6_1:-95300209 | None:intergenic |
| AACACCTGCAGTTCCACCTA+TGG | 0.480803 | 6_1:+95305625 | Msa0899890:CDS |
| AGCGTAATCCAAATGCATTT+AGG | 0.482400 | 6_1:+95302148 | Msa0899890:CDS |
| AACACCTGCAGTTCCACCTA+TGG | 0.482822 | 6_1:+95305559 | Msa0899890:CDS |
| TGTACAGCCACATCACCTTA+AGG | 0.485350 | 6_1:+95303756 | Msa0899890:CDS |
| ATGACAGCTGCCTCTCCCAT+CGG | 0.486923 | 6_1:+95304457 | Msa0899890:CDS |
| TGTTCATCCGGAATTTGTTA+CGG | 0.488179 | 6_1:+95299989 | Msa0899890:CDS |
| CCATCTGAACATGAATTACC+AGG | 0.490481 | 6_1:-95304361 | None:intergenic |
| ATCTTGTTCGTCACACATCA+AGG | 0.491361 | 6_1:-95304425 | None:intergenic |
| AGTGGGTGGTTTGCCGATAC+CGG | 0.492641 | 6_1:+95300190 | Msa0899890:CDS |
| CAGAACAAAGAACGTTGGCT+TGG | 0.493572 | 6_1:-95302879 | None:intergenic |
| GGTGTTGAAGCTGCGGCCAT+AGG | 0.496690 | 6_1:-95305542 | None:intergenic |
| TACTGAGATAGTACATCAGC+AGG | 0.501027 | 6_1:+95305481 | Msa0899890:CDS |
| AAGGTCAGGAACTCTTCTTA+TGG | 0.502814 | 6_1:+95303073 | Msa0899890:CDS |
| TGGAGAATCCAAGCTGAAGA+TGG | 0.503658 | 6_1:+95305694 | Msa0899890:CDS |
| GGTCGTTTGCCCGATGGGAG+AGG | 0.505246 | 6_1:-95304467 | None:intergenic |
| ATGGACTGCAAGAACTTTGA+GGG | 0.505326 | 6_1:+95302916 | Msa0899890:CDS |
| ATGTAGGAGGAGGCTGGGGA+AGG | 0.505481 | 6_1:+95302781 | Msa0899890:intron |
| AATAAATGTAGGAGGAGGCT+GGG | 0.505499 | 6_1:+95302776 | Msa0899890:intron |
| TGCGACTGCGACGGCGTGGT+TGG | 0.505644 | 6_1:+95300049 | Msa0899890:CDS |
| TACGACTGCGGCTGCAACGG+CGG | 0.507622 | 6_1:+95300013 | Msa0899890:CDS |
| GGATGAACAACATTCTTTGG+AGG | 0.510272 | 6_1:-95299975 | None:intergenic |
| TTCTGAGAATTGTAGATGCA+TGG | 0.511900 | 6_1:+95302897 | Msa0899890:CDS |
| GGTGTTGAAGTTGCGGCCAT+AGG | 0.512968 | 6_1:-95305641 | None:intergenic |
| TGGTTTGCCGATACCGGTAC+CGG | 0.513091 | 6_1:+95300196 | Msa0899890:CDS |
| CGAAAAGACCGATGTCTCCT+GGG | 0.513429 | 6_1:+95304395 | Msa0899890:CDS |
| CTGATGTACTATCTCAGTAC+TGG | 0.516199 | 6_1:-95305477 | None:intergenic |
| TGTTGAACCACCTGCTGTTG+CGG | 0.517452 | 6_1:-95300137 | None:intergenic |
| GAAGCTGATGAGGAGGGTGC+TGG | 0.517647 | 6_1:-95303577 | None:intergenic |
| GGAAGAATCGTAATCGGTGG+TGG | 0.518893 | 6_1:+95299860 | Msa0899890:five_prime_UTR |
| GATGGACTCTGACCTAATGT+TGG | 0.519331 | 6_1:-95303628 | None:intergenic |
| CACATCAAGGCTAAAGTCCC+AGG | 0.519918 | 6_1:-95304412 | None:intergenic |
| GCAGTCGAAACCGCAACAGC+AGG | 0.525250 | 6_1:+95300127 | Msa0899890:CDS |
| CCAGCATCAAAGAAAAGAAA+AGG | 0.526932 | 6_1:+95303054 | Msa0899890:CDS |
| TTTGAGGGAAGAATCGTAAT+CGG | 0.527607 | 6_1:+95299854 | Msa0899890:five_prime_UTR |
| ACTGGAGCTATTGGTTCCTA+CGG | 0.529339 | 6_1:+95303018 | Msa0899890:CDS |
| GCGAAGATGTATTGCAGGCA+TGG | 0.531295 | 6_1:-95304489 | None:intergenic |
| GGTGTTGAAGTTGTGGCCAT+AGG | 0.532141 | 6_1:-95305575 | None:intergenic |
| CAGAAACCGGTTGGAGTGGG+TGG | 0.532614 | 6_1:+95300176 | Msa0899890:CDS |
| GGTTACGACTGCGGCTGCAA+CGG | 0.534767 | 6_1:+95300010 | Msa0899890:CDS |
| GTACCACGAGCACTTGAGAC+AGG | 0.538002 | 6_1:-95303601 | None:intergenic |
| GGTGCAGAAACCGGTTGGAG+TGG | 0.539729 | 6_1:+95300172 | Msa0899890:CDS |
| ATTTGTTACGGTTACGACTG+CGG | 0.540360 | 6_1:+95300001 | Msa0899890:CDS |
| GGAACCAATAGCTCCAGTTA+TGG | 0.541771 | 6_1:-95303013 | None:intergenic |
| AAAATTGCGAGCAGCCCTCA+GGG | 0.542064 | 6_1:+95302174 | Msa0899890:CDS |
| GCTCTTGAGTTGATGAAGCA+AGG | 0.542763 | 6_1:-95304255 | None:intergenic |
| GAGTGTTGAATTGTCTGCAC+CGG | 0.543822 | 6_1:-95300227 | None:intergenic |
| CTCTTGAGTTGATGAAGCAA+GGG | 0.545085 | 6_1:-95304254 | None:intergenic |
| CCTAACTTTGAAGTGAAAGA+AGG | 0.546661 | 6_1:+95301390 | Msa0899890:CDS |
| AAGGTACTCCAAAGAAGCAA+AGG | 0.548812 | 6_1:+95301409 | Msa0899890:CDS |
| GGATCCATCAATTAGCAAGC+CGG | 0.552604 | 6_1:+95303107 | Msa0899890:CDS |
| GATCCATCAATTAGCAAGCC+GGG | 0.555761 | 6_1:+95303108 | Msa0899890:CDS |
| CAACAGCAGGTGGTTCAACA+GGG | 0.557867 | 6_1:+95300140 | Msa0899890:CDS |
| GAGAGAGAGAAAGTGTGTGA+AGG | 0.559818 | 6_1:-95299666 | None:intergenic |
| GGCTGCAAATGCGACTGCGA+CGG | 0.559897 | 6_1:+95300040 | Msa0899890:CDS |
| ACCGGTACCGGTGCCAACGC+CGG | 0.561379 | 6_1:+95300208 | Msa0899890:CDS |
| TGAGACAGGTGAAGCTGATG+AGG | 0.562009 | 6_1:-95303587 | None:intergenic |
| CTTCTTATGGCCTACAGCCA+AGG | 0.564439 | 6_1:+95303086 | Msa0899890:CDS |
| GGTTTGAAGAAGAAGGAAGA+AGG | 0.565910 | 6_1:-95299614 | None:intergenic |
| CTGCTATCGCGTGCTCCCTG+AGG | 0.567725 | 6_1:-95302189 | None:intergenic |
| GTTGAAGCTGCGGCCATAGG+TGG | 0.568296 | 6_1:-95305539 | None:intergenic |
| GTTGAAGTTGCGGCCATAGG+TGG | 0.568296 | 6_1:-95305638 | None:intergenic |
| GACCACAGGTGTTGAAGTTG+CGG | 0.569006 | 6_1:-95305648 | None:intergenic |
| CGAAGATGTATTGCAGGCAT+GGG | 0.569090 | 6_1:-95304488 | None:intergenic |
| AAAAGAAGTTGACGTTGAGA+AGG | 0.569097 | 6_1:+95304291 | Msa0899890:CDS |
| TTTGACATCACCATTGCTAG+TGG | 0.569409 | 6_1:-95305507 | None:intergenic |
| GTGCAGAAACCGGTTGGAGT+GGG | 0.569804 | 6_1:+95300173 | Msa0899890:CDS |
| TCGCAATTTCCTGACGGACA+AGG | 0.572247 | 6_1:+95304508 | Msa0899890:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.572999 | 6_1:-95305582 | None:intergenic |
| GTTGAAGTTGTGGCAATATG+TGG | 0.573718 | 6_1:-95305605 | None:intergenic |
| CAGCAGGAAGCCACTAGCAA+TGG | 0.574156 | 6_1:+95305497 | Msa0899890:CDS |
| GCGGCCATAGGTGGAACTGC+AGG | 0.576630 | 6_1:-95305629 | None:intergenic |
| TTAATGGCGGAAGGTGAAGG+AGG | 0.577062 | 6_1:+95299945 | Msa0899890:exon |
| TCAGGGAGCACGCGATAGCA+GGG | 0.577678 | 6_1:+95302191 | Msa0899890:CDS |
| GCGTCGGGAATATATTGTGA+TGG | 0.580424 | 6_1:+95302051 | Msa0899890:CDS |
| CCTGGTAATTCATGTTCAGA+TGG | 0.580857 | 6_1:+95304361 | Msa0899890:CDS |
| AGTTGACGTTGAGAAGGCTA+TGG | 0.583343 | 6_1:+95304297 | Msa0899890:CDS |
| AATATTAATAAAACATCACA+AGG | 0.586663 | 6_1:+95302807 | Msa0899890:CDS |
| ATAAATGTAGGAGGAGGCTG+GGG | 0.586981 | 6_1:+95302777 | Msa0899890:intron |
| CAAACAGATAAAATCAGCCC+TGG | 0.591581 | 6_1:+95304343 | Msa0899890:CDS |
| TGAATTGTCTGCACCGGCGT+TGG | 0.592942 | 6_1:-95300221 | None:intergenic |
| GTCACGGTGCAGAAACCGGT+TGG | 0.593017 | 6_1:+95300167 | Msa0899890:CDS |
| AACTGCAGGTGTTGAAGTTG+TGG | 0.593897 | 6_1:-95305615 | None:intergenic |
| AATTCAACACTCTTCTGTGA+GGG | 0.594410 | 6_1:+95300238 | Msa0899890:CDS |
| ATTGATGGATCCTTGGCTGT+AGG | 0.596299 | 6_1:-95303096 | None:intergenic |
| GTGGCCATAGGTGGAACTGC+AGG | 0.599317 | 6_1:-95305563 | None:intergenic |
| GTTGAAGTTGTGGCCATAGG+TGG | 0.604086 | 6_1:-95305572 | None:intergenic |
| CAAAGCTCCTTAAGGTGATG+TGG | 0.604962 | 6_1:-95303763 | None:intergenic |
| AACTGCAGGTGTTGAAGCTG+CGG | 0.607233 | 6_1:-95305549 | None:intergenic |
| CAATGTGTATCTTCAGCAAG+CGG | 0.607593 | 6_1:+95302981 | Msa0899890:CDS |
| GTCGAAACCGCAACAGCAGG+TGG | 0.610823 | 6_1:+95300130 | Msa0899890:CDS |
| ACAGTATCAATAGGGACCAC+AGG | 0.611364 | 6_1:-95305662 | None:intergenic |
| GCTAAAGTCCCAGGAGACAT+CGG | 0.613977 | 6_1:-95304403 | None:intergenic |
| GTGGCAATATGTGGAACTGC+AGG | 0.618160 | 6_1:-95305596 | None:intergenic |
| TGTCAGGTGAACCTTGTCAA+AGG | 0.626849 | 6_1:+95303553 | Msa0899890:intron |
| TGCCTCGCTAGCTTCTTCGA+CGG | 0.628871 | 6_1:-95300077 | None:intergenic |
| ACATCTTCGCAATTTCCTGA+CGG | 0.629950 | 6_1:+95304502 | Msa0899890:CDS |
| TCACCTGTCTCAAGTGCTCG+TGG | 0.630205 | 6_1:+95303598 | Msa0899890:CDS |
| ATTCTCAGAACAAAGAACGT+TGG | 0.631850 | 6_1:-95302884 | None:intergenic |
| TATTAATAAAACATCACAAG+GGG | 0.635016 | 6_1:+95302809 | Msa0899890:CDS |
| GACAGGTGAAGCTGATGAGG+AGG | 0.635684 | 6_1:-95303584 | None:intergenic |
| GGTTCAACAGGGGAGTGTCA+CGG | 0.636580 | 6_1:+95300151 | Msa0899890:CDS |
| AGGGTGCTGGACCTTTGACA+AGG | 0.645508 | 6_1:-95303564 | None:intergenic |
| TACCGTCGAAGAAGCTAGCG+AGG | 0.646483 | 6_1:+95300075 | Msa0899890:CDS |
| GGCCGCAACTTCAACACCTG+TGG | 0.647452 | 6_1:+95305646 | Msa0899890:CDS |
| AACAGCAGGTGGTTCAACAG+GGG | 0.653532 | 6_1:+95300141 | Msa0899890:CDS |
| CAAATGCGACTGCGACGGCG+TGG | 0.660370 | 6_1:+95300045 | Msa0899890:CDS |
| CAATTCAACACTCTTCTGTG+AGG | 0.662812 | 6_1:+95300237 | Msa0899890:CDS |
| CAATGAAGCTGCTAGACGAG+AGG | 0.668933 | 6_1:+95302107 | Msa0899890:CDS |
| TGGAGGTGATGAAAAGCCGT+AGG | 0.674319 | 6_1:-95303034 | None:intergenic |
| GAGGGAAGAATCGTAATCGG+TGG | 0.677249 | 6_1:+95299857 | Msa0899890:five_prime_UTR |
| ATATTAATAAAACATCACAA+GGG | 0.678177 | 6_1:+95302808 | Msa0899890:CDS |
| CATCTGAACATGAATTACCA+GGG | 0.687920 | 6_1:-95304360 | None:intergenic |
| TGACGGACAAGGAGTGACAG+AGG | 0.696697 | 6_1:+95304519 | Msa0899890:CDS |
| ACAGGTGAAGCTGATGAGGA+GGG | 0.698375 | 6_1:-95303583 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTTATGTCTTTAA+AGG | + | chr6_1:95303863-95303882 | Msa0899890:intron | 10.0% |
| !!! | AAAAAGTTTTTGAAAATTGT+TGG | - | chr6_1:95299720-95299739 | None:intergenic | 15.0% |
| !!! | TGAATTTTTTTAGAAATTTG+AGG | + | chr6_1:95299838-95299857 | Msa0899890:five_prime_UTR | 15.0% |
| !!! | GAATTTTTTTAGAAATTTGA+GGG | + | chr6_1:95299839-95299858 | Msa0899890:five_prime_UTR | 15.0% |
| !!! | TTTAATTGTATACACATTTT+AGG | + | chr6_1:95300840-95300859 | Msa0899890:intron | 15.0% |
| !! | TAAAAAGGAAATATATTCTT+TGG | + | chr6_1:95301899-95301918 | Msa0899890:intron | 15.0% |
| !!! | TTTTATATGATAGAACATTA+TGG | + | chr6_1:95302388-95302407 | Msa0899890:intron | 15.0% |
| !! | TCTAAAAAGTTATAGAAAAA+AGG | + | chr6_1:95302658-95302677 | Msa0899890:intron | 15.0% |
| !! | AATATTAATAAAACATCACA+AGG | + | chr6_1:95302807-95302826 | Msa0899890:CDS | 15.0% |
| !! | ATATTAATAAAACATCACAA+GGG | + | chr6_1:95302808-95302827 | Msa0899890:CDS | 15.0% |
| !!! | ACATAAAAATAATTGATGAT+TGG | - | chr6_1:95303857-95303876 | None:intergenic | 15.0% |
| !! | AATTATGATAAAGTTTCATA+CGG | - | chr6_1:95304054-95304073 | None:intergenic | 15.0% |
| !! | ATTAAATTAAAAATAAGGAG+AGG | - | chr6_1:95304636-95304655 | None:intergenic | 15.0% |
| !!! | TATATGTTTTTCAAAACTTA+GGG | - | chr6_1:95304749-95304768 | None:intergenic | 15.0% |
| !!! | TTATATGTTTTTCAAAACTT+AGG | - | chr6_1:95304750-95304769 | None:intergenic | 15.0% |
| !!! | TTACGAAGAATTTCAATTTT+TGG | - | chr6_1:95299756-95299775 | None:intergenic | 20.0% |
| !!! | AAATTGTTGTGTTGTTTTAA+TGG | + | chr6_1:95299929-95299948 | Msa0899890:exon | 20.0% |
| !! | TTGAATTTGAAGAAAATTTG+TGG | + | chr6_1:95300305-95300324 | Msa0899890:intron | 20.0% |
| !! | TTAGTTAGAATCAATTATAG+AGG | + | chr6_1:95300652-95300671 | Msa0899890:intron | 20.0% |
| !! | TTGTTTCCTGAAAAATTAAA+GGG | - | chr6_1:95301346-95301365 | None:intergenic | 20.0% |
| !! | TTAGCTGAATTATCATAAAA+AGG | + | chr6_1:95301884-95301903 | Msa0899890:intron | 20.0% |
| !! | TTGGAATCAATATAACTTAT+AGG | - | chr6_1:95302295-95302314 | None:intergenic | 20.0% |
| !!! | ACTTTTTAGATCATATAAAG+AGG | - | chr6_1:95302648-95302667 | None:intergenic | 20.0% |
| !! | TATTAATAAAACATCACAAG+GGG | + | chr6_1:95302809-95302828 | Msa0899890:CDS | 20.0% |
| !! | GTTTATTTAAACTTAGGTAT+TGG | + | chr6_1:95303176-95303195 | Msa0899890:intron | 20.0% |
| !!! | GAAATTTTTTTTAATGTGTC+AGG | + | chr6_1:95303537-95303556 | Msa0899890:intron | 20.0% |
| !! | AAGAATATCAGAAAACATAA+CGG | - | chr6_1:95303890-95303909 | None:intergenic | 20.0% |
| !! | AAACAAAAATTGATGAGAAA+AGG | - | chr6_1:95304174-95304193 | None:intergenic | 20.0% |
| !!! | ATATGTTTTTCAAAACTTAG+GGG | - | chr6_1:95304748-95304767 | None:intergenic | 20.0% |
| !!! | ATTGAAAATTTTCATGCTTT+GGG | - | chr6_1:95304809-95304828 | None:intergenic | 20.0% |
| !!! | AATTGAAAATTTTCATGCTT+TGG | - | chr6_1:95304810-95304829 | None:intergenic | 20.0% |
| !!! | AGCAATTTTTAACAATATAG+TGG | - | chr6_1:95305361-95305380 | None:intergenic | 20.0% |
| !! | AAGTGAATTAGAGAATAAAA+AGG | + | chr6_1:95305427-95305446 | Msa0899890:CDS | 20.0% |
| ! | AAAATTGTTGGATCCAAAAT+TGG | - | chr6_1:95299708-95299727 | None:intergenic | 25.0% |
| !!! | GAATTTGAAATTGTGAGTTT+TGG | + | chr6_1:95299901-95299920 | Msa0899890:five_prime_UTR | 25.0% |
| !!! | TGTGGTTTTGAATTTTTGAA+AGG | + | chr6_1:95300323-95300342 | Msa0899890:intron | 25.0% |
| !!! | GTGGTTTTGAATTTTTGAAA+GGG | + | chr6_1:95300324-95300343 | Msa0899890:intron | 25.0% |
| !!! | TTTTTGAAAGGGTTTTTGTT+TGG | + | chr6_1:95300335-95300354 | Msa0899890:intron | 25.0% |
| ! | ATTCGTTTAAAAATCGTGTT+TGG | + | chr6_1:95300606-95300625 | Msa0899890:intron | 25.0% |
| !!! | CAAAACTTTGGTTTCAATTT+TGG | - | chr6_1:95300734-95300753 | None:intergenic | 25.0% |
| ! | ACAACATACAATCAAAACTT+TGG | - | chr6_1:95300746-95300765 | None:intergenic | 25.0% |
| !!! | GTTTTAGTATTTGAGAATGT+AGG | + | chr6_1:95300816-95300835 | Msa0899890:intron | 25.0% |
| !!! | TGTATACACATTTTAGGTAA+CGG | + | chr6_1:95300846-95300865 | Msa0899890:intron | 25.0% |
| ! | CACTCATATATTAGAAGTTA+CGG | + | chr6_1:95300989-95301008 | Msa0899890:intron | 25.0% |
| ! | ATGTTAGTGTTATGAAATAG+CGG | - | chr6_1:95301211-95301230 | None:intergenic | 25.0% |
| !!! | TAACTACCCTTTAATTTTTC+AGG | + | chr6_1:95301337-95301356 | Msa0899890:intron | 25.0% |
| ! | CTTGTTTCCTGAAAAATTAA+AGG | - | chr6_1:95301347-95301366 | None:intergenic | 25.0% |
| !! | TATATAGTAAAGCATCTAAC+TGG | + | chr6_1:95301648-95301667 | Msa0899890:intron | 25.0% |
| !!! | TTTGTTTCTATAGTATGCAT+AGG | + | chr6_1:95301803-95301822 | Msa0899890:intron | 25.0% |
| ! | ACAATTGTGTATGATTAGAT+TGG | + | chr6_1:95302255-95302274 | Msa0899890:intron | 25.0% |
| !! | AAAACACATTCAAGACTTTT+TGG | - | chr6_1:95302314-95302333 | None:intergenic | 25.0% |
| !!! | AGTCTTGAATGTGTTTTTAT+TGG | + | chr6_1:95302317-95302336 | Msa0899890:intron | 25.0% |
| !!! | TGTTGTTGTTTAGAAACTTA+AGG | + | chr6_1:95302460-95302479 | Msa0899890:intron | 25.0% |
| !!! | GTTGTTGTTTAGAAACTTAA+GGG | + | chr6_1:95302461-95302480 | Msa0899890:intron | 25.0% |
| !!! | GTTTAATTTTCTGAATTGAC+TGG | + | chr6_1:95302590-95302609 | Msa0899890:intron | 25.0% |
| ! | AGTTATAGAAAAAAGGTTTC+TGG | + | chr6_1:95302665-95302684 | Msa0899890:intron | 25.0% |
| !!! | ATTTCAATTTTTTTGCTGAC+TGG | + | chr6_1:95302744-95302763 | Msa0899890:intron | 25.0% |
| !!! | GGTGTTTTGATAATAAATGT+AGG | + | chr6_1:95302765-95302784 | Msa0899890:intron | 25.0% |
| !!! | GTTTTGATAATAAATGTAGG+AGG | + | chr6_1:95302768-95302787 | Msa0899890:intron | 25.0% |
| ! | TACAGGGTTTATTTAAACTT+AGG | + | chr6_1:95303170-95303189 | Msa0899890:intron | 25.0% |
| !!! | AACTTAGGTATTGGTTAAAT+CGG | + | chr6_1:95303185-95303204 | Msa0899890:intron | 25.0% |
| ! | ATCGGAGAAATATTAAACAA+CGG | + | chr6_1:95303203-95303222 | Msa0899890:intron | 25.0% |
| !!! | CTTTCTAGTTTTAAATCCTA+AGG | + | chr6_1:95303357-95303376 | Msa0899890:intron | 25.0% |
| !!! | TTAATTTGTCTCTATACCTT+AGG | - | chr6_1:95303376-95303395 | None:intergenic | 25.0% |
| !!! | TACCTGTACTTTAATTTTGA+TGG | - | chr6_1:95303649-95303668 | None:intergenic | 25.0% |
| ! | AATTAAAGTACAGGTAATGT+TGG | + | chr6_1:95303653-95303672 | Msa0899890:intron | 25.0% |
| ! | TGGTTATATGTATGAAATGA+AGG | + | chr6_1:95303673-95303692 | Msa0899890:intron | 25.0% |
| !!! | GCTTACTTGATTATTTTTGT+AGG | + | chr6_1:95303716-95303735 | Msa0899890:intron | 25.0% |
| ! | AGAATATCAGAAAACATAAC+GGG | - | chr6_1:95303889-95303908 | None:intergenic | 25.0% |
| ! | CACATTCAAAATTAAAGAGT+GGG | - | chr6_1:95304000-95304019 | None:intergenic | 25.0% |
| ! | ACACATTCAAAATTAAAGAG+TGG | - | chr6_1:95304001-95304020 | None:intergenic | 25.0% |
| ! | TCTCAATAGAGTTATTACTA+TGG | + | chr6_1:95304588-95304607 | Msa0899890:CDS | 25.0% |
| ! | CTCAATAGAGTTATTACTAT+GGG | + | chr6_1:95304589-95304608 | Msa0899890:CDS | 25.0% |
| !! | TCATATCGTCATTGTAATTT+TGG | + | chr6_1:95304686-95304705 | Msa0899890:intron | 25.0% |
| !!! | TATGTTTTTCAAAACTTAGG+GGG | - | chr6_1:95304747-95304766 | None:intergenic | 25.0% |
| !! | TTGAAAATTTTCATGCTTTG+GGG | - | chr6_1:95304808-95304827 | None:intergenic | 25.0% |
| ! | TGAGACTTTGTAATTATCAA+GGG | + | chr6_1:95304918-95304937 | Msa0899890:intron | 25.0% |
| ! | AAAAGTAACTTCTGACTAAA+AGG | - | chr6_1:95305031-95305050 | None:intergenic | 25.0% |
| ! | TTCTCTTACATCACCAATTT+TGG | + | chr6_1:95299692-95299711 | Msa0899890:five_prime_UTR | 30.0% |
| GTGGAATTTGAACAATTTGA+AGG | + | chr6_1:95299879-95299898 | Msa0899890:five_prime_UTR | 30.0% | |
| !!! | TTGTTGTGTTGTTTTAATGG+CGG | + | chr6_1:95299932-95299951 | Msa0899890:exon | 30.0% |
| !! | TGATTTTAATGCGATGTTGA+TGG | + | chr6_1:95300103-95300122 | Msa0899890:CDS | 30.0% |
| TTACCTAAATTCACTAAGTG+CGG | - | chr6_1:95300890-95300909 | None:intergenic | 30.0% | |
| CACTTAGTGAATTTAGGTAA+CGG | + | chr6_1:95300890-95300909 | Msa0899890:intron | 30.0% | |
| TAACTTCTACTGTATAGTCA+TGG | + | chr6_1:95301832-95301851 | Msa0899890:intron | 30.0% | |
| AACTTCTACTGTATAGTCAT+GGG | + | chr6_1:95301833-95301852 | Msa0899890:intron | 30.0% | |
| !!! | TGTTTGTTTTATCTCTCCTT+TGG | + | chr6_1:95301939-95301958 | Msa0899890:intron | 30.0% |
| ! | ATATTGTGAATGTTTTGCGT+CGG | + | chr6_1:95302035-95302054 | Msa0899890:CDS | 30.0% |
| !! | GTGTATGATTAGATTGGTTT+AGG | + | chr6_1:95302261-95302280 | Msa0899890:intron | 30.0% |
| TATTGGAGTATATAGCGTTT+AGG | + | chr6_1:95302334-95302353 | Msa0899890:intron | 30.0% | |
| ATTGGAGTATATAGCGTTTA+GGG | + | chr6_1:95302335-95302354 | Msa0899890:intron | 30.0% | |
| TGACATCACTTAGTTGAATA+AGG | + | chr6_1:95302431-95302450 | Msa0899890:intron | 30.0% | |
| TTCATTAAGTGTCTGATACA+CGG | - | chr6_1:95302704-95302723 | None:intergenic | 30.0% | |
| ! | TTGATAATAAATGTAGGAGG+AGG | + | chr6_1:95302771-95302790 | Msa0899890:intron | 30.0% |
| ATCAAAGAAAAGAAAAGGTC+AGG | + | chr6_1:95303059-95303078 | Msa0899890:CDS | 30.0% | |
| GTCCATCAAAATTAAAGTAC+AGG | + | chr6_1:95303644-95303663 | Msa0899890:CDS | 30.0% | |
| !! | TCTTTTGTTGTATGAATGAC+TGG | + | chr6_1:95303906-95303925 | Msa0899890:intron | 30.0% |
| TGAATGTGTGTGCATTATAA+CGG | + | chr6_1:95304012-95304031 | Msa0899890:intron | 30.0% | |
| ! | TCATACGGTGAAGTTTTTAT+TGG | - | chr6_1:95304039-95304058 | None:intergenic | 30.0% |
| !! | ACAATCAATGGTTCTGAAAA+AGG | - | chr6_1:95304147-95304166 | None:intergenic | 30.0% |
| AGAAAAGGAAACACAATCAA+TGG | - | chr6_1:95304159-95304178 | None:intergenic | 30.0% | |
| ATTACTATGGGAGAGATAAA+TGG | + | chr6_1:95304601-95304620 | Msa0899890:CDS | 30.0% | |
| ! | AGACCGTCAATTTTTCATTT+TGG | + | chr6_1:95304714-95304733 | Msa0899890:intron | 30.0% |
| CTGCCAAAATGAAAAATTGA+CGG | - | chr6_1:95304720-95304739 | None:intergenic | 30.0% | |
| AACACTTGTAGAGTAATCAT+TGG | - | chr6_1:95304849-95304868 | None:intergenic | 30.0% | |
| CTGAGACTTTGTAATTATCA+AGG | + | chr6_1:95304917-95304936 | Msa0899890:intron | 30.0% | |
| GAGACTTTGTAATTATCAAG+GGG | + | chr6_1:95304919-95304938 | Msa0899890:intron | 30.0% | |
| AGACTTTGTAATTATCAAGG+GGG | + | chr6_1:95304920-95304939 | Msa0899890:intron | 30.0% | |
| TTCAATAAGCTGAAAGTTGA+AGG | + | chr6_1:95304955-95304974 | Msa0899890:intron | 30.0% | |
| TCAATAAGCTGAAAGTTGAA+GGG | + | chr6_1:95304956-95304975 | Msa0899890:intron | 30.0% | |
| CAATGCCATTAGAAAGAATT+CGG | + | chr6_1:95305105-95305124 | Msa0899890:intron | 30.0% | |
| GGCTAATGAGAAAATATGAA+GGG | - | chr6_1:95305340-95305359 | None:intergenic | 30.0% | |
| TGGCTAATGAGAAAATATGA+AGG | - | chr6_1:95305341-95305360 | None:intergenic | 30.0% | |
| !! | AACACTTTGTCTCTGAAATT+GGG | - | chr6_1:95305394-95305413 | None:intergenic | 30.0% |
| TTTCCAGTTTCATTGTTGAT+TGG | - | chr6_1:95305455-95305474 | None:intergenic | 30.0% | |
| TTTCAGCTACAGTATCAATA+GGG | - | chr6_1:95305673-95305692 | None:intergenic | 30.0% | |
| ! | TTTTCAGCTACAGTATCAAT+AGG | - | chr6_1:95305674-95305693 | None:intergenic | 30.0% |
| ATTGATACTGTAGCTGAAAA+TGG | + | chr6_1:95305674-95305693 | Msa0899890:CDS | 30.0% | |
| GAAAAAGGGTTTGAAGAAGA+AGG | - | chr6_1:95299624-95299643 | None:intergenic | 35.0% | |
| GAGAGAAAGTGAGAGAAAAA+GGG | - | chr6_1:95299638-95299657 | None:intergenic | 35.0% | |
| AGAGAGAAAGTGAGAGAAAA+AGG | - | chr6_1:95299639-95299658 | None:intergenic | 35.0% | |
| TTTGAGGGAAGAATCGTAAT+CGG | + | chr6_1:95299854-95299873 | Msa0899890:five_prime_UTR | 35.0% | |
| TCCAAAGAATGTTGTTCATC+CGG | + | chr6_1:95299977-95299996 | Msa0899890:CDS | 35.0% | |
| !! | TGTTCATCCGGAATTTGTTA+CGG | + | chr6_1:95299989-95300008 | Msa0899890:CDS | 35.0% |
| AATTCAACACTCTTCTGTGA+GGG | + | chr6_1:95300238-95300257 | Msa0899890:CDS | 35.0% | |
| ! | AAAAGTGAGTTGAACTGAAG+TGG | + | chr6_1:95300567-95300586 | Msa0899890:intron | 35.0% |
| AGGCAAAAGCAATTCTACAT+GGG | + | chr6_1:95300672-95300691 | Msa0899890:intron | 35.0% | |
| ! | TGGTTTCAATTTTGGATGAG+AGG | - | chr6_1:95300726-95300745 | None:intergenic | 35.0% |
| TCTTCACGAGGATTATATGT+TGG | + | chr6_1:95300778-95300797 | Msa0899890:intron | 35.0% | |
| !!! | TTTAGGTAACGGATTTTCAG+CGG | + | chr6_1:95300857-95300876 | Msa0899890:intron | 35.0% |
| TAACCGCACTTAGTGAATTT+AGG | + | chr6_1:95300884-95300903 | Msa0899890:intron | 35.0% | |
| CAGTGAATTATACCATGACT+GGG | - | chr6_1:95301036-95301055 | None:intergenic | 35.0% | |
| ACAGTGAATTATACCATGAC+TGG | - | chr6_1:95301037-95301056 | None:intergenic | 35.0% | |
| TAATTCACTGTTTGCAATCG+CGG | + | chr6_1:95301046-95301065 | Msa0899890:intron | 35.0% | |
| ! | TTTGACAAGCAACTGTCTTT+TGG | + | chr6_1:95301306-95301325 | Msa0899890:intron | 35.0% |
| TTAGGTCTTGATCTTGGTTT+GGG | - | chr6_1:95301375-95301394 | None:intergenic | 35.0% | |
| TCAAAGTTAGGTCTTGATCT+TGG | - | chr6_1:95301381-95301400 | None:intergenic | 35.0% | |
| CCTTCTTTCACTTCAAAGTT+AGG | - | chr6_1:95301393-95301412 | None:intergenic | 35.0% | |
| !! | CCTAACTTTGAAGTGAAAGA+AGG | + | chr6_1:95301390-95301409 | Msa0899890:CDS | 35.0% |
| CATTGAAAGAAACACACACA+CGG | - | chr6_1:95301496-95301515 | None:intergenic | 35.0% | |
| GCTAAATTTGAGCCTAACTT+TGG | - | chr6_1:95301869-95301888 | None:intergenic | 35.0% | |
| CATTTGTCATAGCACCTTAT+TGG | + | chr6_1:95301969-95301988 | Msa0899890:intron | 35.0% | |
| ATGAAGTGTAACAGCCAATA+AGG | - | chr6_1:95301986-95302005 | None:intergenic | 35.0% | |
| ! | TATTGTGAATGTTTTGCGTC+GGG | + | chr6_1:95302036-95302055 | Msa0899890:CDS | 35.0% |
| AGCGTAATCCAAATGCATTT+AGG | + | chr6_1:95302148-95302167 | Msa0899890:CDS | 35.0% | |
| ! | ATTTTGGGCCTAAATGCATT+TGG | - | chr6_1:95302159-95302178 | None:intergenic | 35.0% |
| ! | TAAGTAGGTCTAGCATTTTG+TGG | + | chr6_1:95302214-95302233 | Msa0899890:intron | 35.0% |
| TCACTTAGTTGAATAAGGCT+TGG | + | chr6_1:95302436-95302455 | Msa0899890:intron | 35.0% | |
| TTGTTAGATACGAACGTGAA+TGG | - | chr6_1:95302537-95302556 | None:intergenic | 35.0% | |
| AGCATTCACAGTACTTCTTA+AGG | - | chr6_1:95302858-95302877 | None:intergenic | 35.0% | |
| ATTCTCAGAACAAAGAACGT+TGG | - | chr6_1:95302887-95302906 | None:intergenic | 35.0% | |
| ! | TTCTGAGAATTGTAGATGCA+TGG | + | chr6_1:95302897-95302916 | Msa0899890:CDS | 35.0% |
| ! | TTTCTTTTCTTTGATGCTGG+AGG | - | chr6_1:95303054-95303073 | None:intergenic | 35.0% |
| ! | CCTTTTCTTTTCTTTGATGC+TGG | - | chr6_1:95303057-95303076 | None:intergenic | 35.0% |
| CCAGCATCAAAGAAAAGAAA+AGG | + | chr6_1:95303054-95303073 | Msa0899890:CDS | 35.0% | |
| !! | TATTTGCTATCTGCAGACTA+TGG | + | chr6_1:95303454-95303473 | Msa0899890:intron | 35.0% |
| TTACGAAAACAGGAAATGCA+TGG | - | chr6_1:95303972-95303991 | None:intergenic | 35.0% | |
| ! | CATTTCCTGTTTTCGTAATC+AGG | + | chr6_1:95303974-95303993 | Msa0899890:intron | 35.0% |
| ATCAGACCAGAAAAAAACAG+TGG | + | chr6_1:95304201-95304220 | Msa0899890:intron | 35.0% | |
| !!! | GCTTTTCCACTGTTTTTTTC+TGG | - | chr6_1:95304210-95304229 | None:intergenic | 35.0% |
| !! | ACGTCAACTTCTTTTTGACT+CGG | - | chr6_1:95304286-95304305 | None:intergenic | 35.0% |
| AAAAGAAGTTGACGTTGAGA+AGG | + | chr6_1:95304291-95304310 | Msa0899890:CDS | 35.0% | |
| CATCTGAACATGAATTACCA+GGG | - | chr6_1:95304363-95304382 | None:intergenic | 35.0% | |
| AAATTGCGAAGATGTATTGC+AGG | - | chr6_1:95304497-95304516 | None:intergenic | 35.0% | |
| !!! | AAATTTTCATGCTTTGGGGA+AGG | - | chr6_1:95304804-95304823 | None:intergenic | 35.0% |
| TATAGATAGTCTGCTTTCCA+TGG | + | chr6_1:95305082-95305101 | Msa0899890:intron | 35.0% | |
| GGAATCCGAATTCTTTCTAA+TGG | - | chr6_1:95305113-95305132 | None:intergenic | 35.0% | |
| ATTCGGATTCCCTTCAATAA+AGG | + | chr6_1:95305122-95305141 | Msa0899890:intron | 35.0% | |
| AGCAGGATACCTTTATTGAA+GGG | - | chr6_1:95305134-95305153 | None:intergenic | 35.0% | |
| AAGCAGGATACCTTTATTGA+AGG | - | chr6_1:95305135-95305154 | None:intergenic | 35.0% | |
| !! | AATAAAGGTATCCTGCTTTC+AGG | + | chr6_1:95305137-95305156 | Msa0899890:intron | 35.0% |
| ! | GAACGATCTAGATTCAAGTT+CGG | - | chr6_1:95305244-95305263 | None:intergenic | 35.0% |
| !! | GAACACTTTGTCTCTGAAAT+TGG | - | chr6_1:95305395-95305414 | None:intergenic | 35.0% |
| ! | AGAGACAAAGTGTTCTTCAT+TGG | + | chr6_1:95305400-95305419 | Msa0899890:intron | 35.0% |
| GATCCAATCAACAATGAAAC+TGG | + | chr6_1:95305449-95305468 | Msa0899890:CDS | 35.0% | |
| GGTTTGAAGAAGAAGGAAGA+AGG | - | chr6_1:95299617-95299636 | None:intergenic | 40.0% | |
| !!! | TGTGTTGTTTTAATGGCGGA+AGG | + | chr6_1:95299936-95299955 | Msa0899890:exon | 40.0% |
| GGATGAACAACATTCTTTGG+AGG | - | chr6_1:95299978-95299997 | None:intergenic | 40.0% | |
| TCCGGATGAACAACATTCTT+TGG | - | chr6_1:95299981-95300000 | None:intergenic | 40.0% | |
| GTCGTAACCGTAACAAATTC+CGG | - | chr6_1:95299999-95300018 | None:intergenic | 40.0% | |
| ! | ATTTGTTACGGTTACGACTG+CGG | + | chr6_1:95300001-95300020 | Msa0899890:CDS | 40.0% |
| CAATTCAACACTCTTCTGTG+AGG | + | chr6_1:95300237-95300256 | Msa0899890:CDS | 40.0% | |
| GACTGTGTTTAGTGTGTGTT+TGG | + | chr6_1:95300515-95300534 | Msa0899890:intron | 40.0% | |
| GAGGCAAAAGCAATTCTACA+TGG | + | chr6_1:95300671-95300690 | Msa0899890:intron | 40.0% | |
| AATGTATCGTGTTCTTCACG+AGG | + | chr6_1:95300766-95300785 | Msa0899890:intron | 40.0% | |
| TCACGAGGATTATATGTTGG+CGG | + | chr6_1:95300781-95300800 | Msa0899890:intron | 40.0% | |
| GTTAGGTCTTGATCTTGGTT+TGG | - | chr6_1:95301376-95301395 | None:intergenic | 40.0% | |
| ! | AAGGTACTCCAAAGAAGCAA+AGG | + | chr6_1:95301409-95301428 | Msa0899890:CDS | 40.0% |
| CGTGTGTGTGTTTCTTTCAA+TGG | + | chr6_1:95301494-95301513 | Msa0899890:intron | 40.0% | |
| CTACAGCAAAATTCCTGTCA+TGG | - | chr6_1:95301715-95301734 | None:intergenic | 40.0% | |
| CAAACGATCAGTCAGTTGAT+AGG | - | chr6_1:95301776-95301795 | None:intergenic | 40.0% | |
| ! | TTTTATCTCTCCTTTGGCAG+AGG | + | chr6_1:95301945-95301964 | Msa0899890:intron | 40.0% |
| ACTAAGTGATGTCAGCTACA+TGG | - | chr6_1:95302425-95302444 | None:intergenic | 40.0% | |
| TGCATATCTTCGCAAGAAGT+TGG | + | chr6_1:95302557-95302576 | Msa0899890:intron | 40.0% | |
| TATCTTCGCAAGAAGTTGGA+TGG | + | chr6_1:95302561-95302580 | Msa0899890:intron | 40.0% | |
| TAATAAATGTAGGAGGAGGC+TGG | + | chr6_1:95302775-95302794 | Msa0899890:intron | 40.0% | |
| AATAAATGTAGGAGGAGGCT+GGG | + | chr6_1:95302776-95302795 | Msa0899890:intron | 40.0% | |
| !! | GGGTGCCATTGTAAAAAATC+TGG | + | chr6_1:95302829-95302848 | Msa0899890:CDS | 40.0% |
| !!! | GGCAGCCAGATTTTTTACAA+TGG | - | chr6_1:95302837-95302856 | None:intergenic | 40.0% |
| ! | ATGGACTGCAAGAACTTTGA+GGG | + | chr6_1:95302916-95302935 | Msa0899890:CDS | 40.0% |
| CAATGTGTATCTTCAGCAAG+CGG | + | chr6_1:95302981-95303000 | Msa0899890:CDS | 40.0% | |
| AAGGTCAGGAACTCTTCTTA+TGG | + | chr6_1:95303073-95303092 | Msa0899890:CDS | 40.0% | |
| ! | CTTGCTAATTGATGGATCCT+TGG | - | chr6_1:95303106-95303125 | None:intergenic | 40.0% |
| ! | GCAAATTTTACCTGTTGTCC+CGG | - | chr6_1:95303129-95303148 | None:intergenic | 40.0% |
| ! | TTACTATGTCGACTAGAGAC+TGG | - | chr6_1:95303234-95303253 | None:intergenic | 40.0% |
| TATCTGCAGACTATGGTGAA+TGG | + | chr6_1:95303461-95303480 | Msa0899890:intron | 40.0% | |
| AGACTATGGTGAATGGTATC+AGG | + | chr6_1:95303468-95303487 | Msa0899890:intron | 40.0% | |
| CGTGGTACAAATCCAACATT+AGG | + | chr6_1:95303616-95303635 | Msa0899890:CDS | 40.0% | |
| GAACTGAACAAAGCTCCTTA+AGG | - | chr6_1:95303774-95303793 | None:intergenic | 40.0% | |
| !! | TAAGGAGCTTTGTTCAGTTC+TGG | + | chr6_1:95303774-95303793 | Msa0899890:CDS | 40.0% |
| ! | TCAGTTCTGGTACTAGTATC+TGG | + | chr6_1:95303787-95303806 | Msa0899890:CDS | 40.0% |
| TGACTGGTATTAACCTAGAG+AGG | + | chr6_1:95303922-95303941 | Msa0899890:intron | 40.0% | |
| TGGAAAAGTGACACGTATAG+AGG | - | chr6_1:95303952-95303971 | None:intergenic | 40.0% | |
| GATTATGCACTAGAGTCTAG+AGG | - | chr6_1:95304080-95304099 | None:intergenic | 40.0% | |
| CTGAGAATCACACTAAGGAT+CGG | + | chr6_1:95304118-95304137 | Msa0899890:intron | 40.0% | |
| !! | CTCTTGAGTTGATGAAGCAA+GGG | - | chr6_1:95304257-95304276 | None:intergenic | 40.0% |
| CAAACAGATAAAATCAGCCC+TGG | + | chr6_1:95304343-95304362 | Msa0899890:CDS | 40.0% | |
| CCATCTGAACATGAATTACC+AGG | - | chr6_1:95304364-95304383 | None:intergenic | 40.0% | |
| CCTGGTAATTCATGTTCAGA+TGG | + | chr6_1:95304361-95304380 | Msa0899890:CDS | 40.0% | |
| ATCTTGTTCGTCACACATCA+AGG | - | chr6_1:95304428-95304447 | None:intergenic | 40.0% | |
| ACATCTTCGCAATTTCCTGA+CGG | + | chr6_1:95304502-95304521 | Msa0899890:CDS | 40.0% | |
| ! | AGGGTCAAAGCACTAAAGAT+AGG | + | chr6_1:95304975-95304994 | Msa0899890:intron | 40.0% |
| ! | GGGTCAAAGCACTAAAGATA+GGG | + | chr6_1:95304976-95304995 | Msa0899890:intron | 40.0% |
| ! | GGTCAAAGCACTAAAGATAG+GGG | + | chr6_1:95304977-95304996 | Msa0899890:intron | 40.0% |
| TAAAGATAGGGGCAATGGTT+TGG | + | chr6_1:95304988-95305007 | Msa0899890:intron | 40.0% | |
| TCTTTCTAATGGCATTGCCA+TGG | - | chr6_1:95305102-95305121 | None:intergenic | 40.0% | |
| ! | AAGGGAAATTGGTGGTCATT+CGG | + | chr6_1:95305164-95305183 | Msa0899890:intron | 40.0% |
| TATTCACTCAGTCTGGACAT+CGG | - | chr6_1:95305286-95305305 | None:intergenic | 40.0% | |
| ATGTCCAGACTGAGTGAATA+TGG | + | chr6_1:95305286-95305305 | Msa0899890:intron | 40.0% | |
| TGTCCAGACTGAGTGAATAT+GGG | + | chr6_1:95305287-95305306 | Msa0899890:intron | 40.0% | |
| CTGATGTACTATCTCAGTAC+TGG | - | chr6_1:95305480-95305499 | None:intergenic | 40.0% | |
| TACTGAGATAGTACATCAGC+AGG | + | chr6_1:95305481-95305500 | Msa0899890:CDS | 40.0% | |
| TTTGACATCACCATTGCTAG+TGG | - | chr6_1:95305510-95305529 | None:intergenic | 40.0% | |
| GTTGAAGTTGTGGCAATATG+TGG | - | chr6_1:95305608-95305627 | None:intergenic | 40.0% | |
| ! | CTCTTTTTCCATCTTCAGCT+TGG | - | chr6_1:95305705-95305724 | None:intergenic | 40.0% |
| ! | GAGAGAGAGAAAGTGTGTGA+AGG | - | chr6_1:95299669-95299688 | None:intergenic | 45.0% |
| !! | GTTTTAATGGCGGAAGGTGA+AGG | + | chr6_1:95299942-95299961 | Msa0899890:exon | 45.0% |
| !! | GAGTGTTGAATTGTCTGCAC+CGG | - | chr6_1:95300230-95300249 | None:intergenic | 45.0% |
| AACACTCTTCTGTGAGGGTT+GGG | + | chr6_1:95300243-95300262 | Msa0899890:CDS | 45.0% | |
| CACGAGGATTATATGTTGGC+GGG | + | chr6_1:95300782-95300801 | Msa0899890:intron | 45.0% | |
| GTTACGGCTTGAAGTGAAGT+AGG | + | chr6_1:95301005-95301024 | Msa0899890:intron | 45.0% | |
| GAACAGAGTGTGTCAAACAG+CGG | - | chr6_1:95301134-95301153 | None:intergenic | 45.0% | |
| TTGCACTGCCTTTGCTTCTT+TGG | - | chr6_1:95301420-95301439 | None:intergenic | 45.0% | |
| AGTGTGTGCATAGCATGTAC+TGG | + | chr6_1:95301560-95301579 | Msa0899890:intron | 45.0% | |
| GGGAAATTCATACCCACTGT+GGG | - | chr6_1:95301675-95301694 | None:intergenic | 45.0% | |
| AATTCCTGTCATGGCAAGGT+CGG | - | chr6_1:95301706-95301725 | None:intergenic | 45.0% | |
| GCAAAATTCCTGTCATGGCA+AGG | - | chr6_1:95301710-95301729 | None:intergenic | 45.0% | |
| GTATAGTCATGGGTTTCCCA+TGG | + | chr6_1:95301843-95301862 | Msa0899890:intron | 45.0% | |
| TTGAGCCTAACTTTGGCCAT+GGG | - | chr6_1:95301862-95301881 | None:intergenic | 45.0% | |
| TTTGAGCCTAACTTTGGCCA+TGG | - | chr6_1:95301863-95301882 | None:intergenic | 45.0% | |
| TGACAAATGACCTCTGCCAA+AGG | - | chr6_1:95301958-95301977 | None:intergenic | 45.0% | |
| GCGTCGGGAATATATTGTGA+TGG | + | chr6_1:95302051-95302070 | Msa0899890:CDS | 45.0% | |
| ! | TAGGTCTAGCATTTTGTGGC+AGG | + | chr6_1:95302218-95302237 | Msa0899890:intron | 45.0% |
| GCAAGAAGTTGGATGGTTTC+TGG | + | chr6_1:95302568-95302587 | Msa0899890:intron | 45.0% | |
| ATAAATGTAGGAGGAGGCTG+GGG | + | chr6_1:95302777-95302796 | Msa0899890:intron | 45.0% | |
| ! | CAGAACAAAGAACGTTGGCT+TGG | - | chr6_1:95302882-95302901 | None:intergenic | 45.0% |
| ! | CATGGACTGCAAGAACTTTG+AGG | + | chr6_1:95302915-95302934 | Msa0899890:CDS | 45.0% |
| GGAACCAATAGCTCCAGTTA+TGG | - | chr6_1:95303016-95303035 | None:intergenic | 45.0% | |
| !! | ACTGGAGCTATTGGTTCCTA+CGG | + | chr6_1:95303018-95303037 | Msa0899890:CDS | 45.0% |
| ! | ATTGATGGATCCTTGGCTGT+AGG | - | chr6_1:95303099-95303118 | None:intergenic | 45.0% |
| GGATCCATCAATTAGCAAGC+CGG | + | chr6_1:95303107-95303126 | Msa0899890:CDS | 45.0% | |
| GATCCATCAATTAGCAAGCC+GGG | + | chr6_1:95303108-95303127 | Msa0899890:CDS | 45.0% | |
| GCTCATTGCACAAGTAGTAC+TGG | + | chr6_1:95303147-95303166 | Msa0899890:intron | 45.0% | |
| !! | TGCACAAGTAGTACTGGTAC+AGG | + | chr6_1:95303153-95303172 | Msa0899890:intron | 45.0% |
| !! | GCACAAGTAGTACTGGTACA+GGG | + | chr6_1:95303154-95303173 | Msa0899890:intron | 45.0% |
| TGTCAGGTGAACCTTGTCAA+AGG | + | chr6_1:95303553-95303572 | Msa0899890:intron | 45.0% | |
| ! | GATGGACTCTGACCTAATGT+TGG | - | chr6_1:95303631-95303650 | None:intergenic | 45.0% |
| TGTACAGCCACATCACCTTA+AGG | + | chr6_1:95303756-95303775 | Msa0899890:CDS | 45.0% | |
| CAAAGCTCCTTAAGGTGATG+TGG | - | chr6_1:95303766-95303785 | None:intergenic | 45.0% | |
| GTATAGAGGAAAGCCTCTCT+AGG | - | chr6_1:95303938-95303957 | None:intergenic | 45.0% | |
| CAGAGCTGAGAATCACACTA+AGG | + | chr6_1:95304113-95304132 | Msa0899890:intron | 45.0% | |
| !! | GCTCTTGAGTTGATGAAGCA+AGG | - | chr6_1:95304258-95304277 | None:intergenic | 45.0% |
| AGTTGACGTTGAGAAGGCTA+TGG | + | chr6_1:95304297-95304316 | Msa0899890:CDS | 45.0% | |
| CGAAGATGTATTGCAGGCAT+GGG | - | chr6_1:95304491-95304510 | None:intergenic | 45.0% | |
| AGCACTAAAGATAGGGGCAA+TGG | + | chr6_1:95304983-95305002 | Msa0899890:intron | 45.0% | |
| TTTCAGGCAGCAAGGGAAAT+TGG | + | chr6_1:95305153-95305172 | Msa0899890:intron | 45.0% | |
| CGGTAGTCATTCGATCAAGA+TGG | - | chr6_1:95305266-95305285 | None:intergenic | 45.0% | |
| GTCCAGACTGAGTGAATATG+GGG | + | chr6_1:95305288-95305307 | Msa0899890:intron | 45.0% | |
| TTCCCCATATTCACTCAGTC+TGG | - | chr6_1:95305293-95305312 | None:intergenic | 45.0% | |
| ATGGGGAATCCATGACTACA+AGG | + | chr6_1:95305305-95305324 | Msa0899890:intron | 45.0% | |
| TGGGGAATCCATGACTACAA+GGG | + | chr6_1:95305306-95305325 | Msa0899890:intron | 45.0% | |
| ATGTAGCTCCCTTGTAGTCA+TGG | - | chr6_1:95305317-95305336 | None:intergenic | 45.0% | |
| CAAAGCTGCATTTCCACCTA+TGG | + | chr6_1:95305526-95305545 | Msa0899890:CDS | 45.0% | |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | - | chr6_1:95305585-95305604 | None:intergenic | 45.0% |
| !! | AACTGCAGGTGTTGAAGTTG+TGG | - | chr6_1:95305585-95305604 | None:intergenic | 45.0% |
| ACAGTATCAATAGGGACCAC+AGG | - | chr6_1:95305665-95305684 | None:intergenic | 45.0% | |
| TGGAGAATCCAAGCTGAAGA+TGG | + | chr6_1:95305694-95305713 | Msa0899890:CDS | 45.0% | |
| !!! | AAATTTATTTGTTTTTAATA+GGG | - | chr6_1:95301748-95301767 | None:intergenic | 5.0% |
| !!! | AAAATTTATTTGTTTTTAAT+AGG | - | chr6_1:95301749-95301768 | None:intergenic | 5.0% |
| !! | GTAAAATTAAATTAAAAATA+AGG | - | chr6_1:95304641-95304660 | None:intergenic | 5.0% |
| !!! | TTTTAATTTAATTTTACATT+TGG | + | chr6_1:95304644-95304663 | Msa0899890:intron | 5.0% |
| GAGGGAAGAATCGTAATCGG+TGG | + | chr6_1:95299857-95299876 | Msa0899890:five_prime_UTR | 50.0% | |
| GGAAGAATCGTAATCGGTGG+TGG | + | chr6_1:95299860-95299879 | Msa0899890:five_prime_UTR | 50.0% | |
| ! | TTAATGGCGGAAGGTGAAGG+AGG | + | chr6_1:95299945-95299964 | Msa0899890:exon | 50.0% |
| TGTTGAACCACCTGCTGTTG+CGG | - | chr6_1:95300140-95300159 | None:intergenic | 50.0% | |
| CAACAGCAGGTGGTTCAACA+GGG | + | chr6_1:95300140-95300159 | Msa0899890:CDS | 50.0% | |
| AACAGCAGGTGGTTCAACAG+GGG | + | chr6_1:95300141-95300160 | Msa0899890:CDS | 50.0% | |
| CAACACTCTTCTGTGAGGGT+TGG | + | chr6_1:95300242-95300261 | Msa0899890:CDS | 50.0% | |
| AAGTAGGCACTTCCCAGTCA+TGG | + | chr6_1:95301021-95301040 | Msa0899890:intron | 50.0% | |
| ! | CTGTTTGCAATCGCGGATTG+TGG | + | chr6_1:95301053-95301072 | Msa0899890:intron | 50.0% |
| GTGTCAAACAGCGGCTATAG+TGG | - | chr6_1:95301125-95301144 | None:intergenic | 50.0% | |
| CATCTAACTGGACCCACAGT+GGG | + | chr6_1:95301660-95301679 | Msa0899890:intron | 50.0% | |
| CGGGAAATTCATACCCACTG+TGG | - | chr6_1:95301676-95301695 | None:intergenic | 50.0% | |
| GGTTTCCCATGGCCAAAGTT+AGG | + | chr6_1:95301854-95301873 | Msa0899890:intron | 50.0% | |
| CAATGAAGCTGCTAGACGAG+AGG | + | chr6_1:95302107-95302126 | Msa0899890:CDS | 50.0% | |
| ! | TGAGGGCTGCTCGCAATTTT+GGG | - | chr6_1:95302174-95302193 | None:intergenic | 50.0% |
| AAAATTGCGAGCAGCCCTCA+GGG | + | chr6_1:95302174-95302193 | Msa0899890:CDS | 50.0% | |
| TGAGGGAAGTGAAGAGAGAC+AGG | + | chr6_1:95302933-95302952 | Msa0899890:CDS | 50.0% | |
| !! | GAGAGACAGGCTTTGTTTCG+TGG | + | chr6_1:95302946-95302965 | Msa0899890:CDS | 50.0% |
| GCTGCCATAACTGGAGCTAT+TGG | + | chr6_1:95303009-95303028 | Msa0899890:CDS | 50.0% | |
| TGGAGGTGATGAAAAGCCGT+AGG | - | chr6_1:95303037-95303056 | None:intergenic | 50.0% | |
| CTTCTTATGGCCTACAGCCA+AGG | + | chr6_1:95303086-95303105 | Msa0899890:CDS | 50.0% | |
| !! | TGTCCCGGCTTGCTAATTGA+TGG | - | chr6_1:95303114-95303133 | None:intergenic | 50.0% |
| AATTAGCAAGCCGGGACAAC+AGG | + | chr6_1:95303116-95303135 | Msa0899890:CDS | 50.0% | |
| ACAGGTGAAGCTGATGAGGA+GGG | - | chr6_1:95303586-95303605 | None:intergenic | 50.0% | |
| TGAGACAGGTGAAGCTGATG+AGG | - | chr6_1:95303590-95303609 | None:intergenic | 50.0% | |
| GTGGGCCTGATTACGAAAAC+AGG | - | chr6_1:95303982-95304001 | None:intergenic | 50.0% | |
| ! | CAGGAGACATCGGTCTTTTC+GGG | - | chr6_1:95304396-95304415 | None:intergenic | 50.0% |
| ! | CCAGGAGACATCGGTCTTTT+CGG | - | chr6_1:95304397-95304416 | None:intergenic | 50.0% |
| CGAAAAGACCGATGTCTCCT+GGG | + | chr6_1:95304395-95304414 | Msa0899890:CDS | 50.0% | |
| GCTAAAGTCCCAGGAGACAT+CGG | - | chr6_1:95304406-95304425 | None:intergenic | 50.0% | |
| CACATCAAGGCTAAAGTCCC+AGG | - | chr6_1:95304415-95304434 | None:intergenic | 50.0% | |
| GCGAAGATGTATTGCAGGCA+TGG | - | chr6_1:95304492-95304511 | None:intergenic | 50.0% | |
| ! | TCGCAATTTCCTGACGGACA+AGG | + | chr6_1:95304508-95304527 | Msa0899890:CDS | 50.0% |
| TATCCTGCTTTCAGGCAGCA+AGG | + | chr6_1:95305145-95305164 | Msa0899890:intron | 50.0% | |
| ATCCTGCTTTCAGGCAGCAA+GGG | + | chr6_1:95305146-95305165 | Msa0899890:intron | 50.0% | |
| !! | AACTGCAGGTGTTGAAGCTG+CGG | - | chr6_1:95305552-95305571 | None:intergenic | 50.0% |
| AACACCTGCAGTTCCACCTA+TGG | + | chr6_1:95305559-95305578 | Msa0899890:CDS | 50.0% | |
| GTTGAAGTTGTGGCCATAGG+TGG | - | chr6_1:95305575-95305594 | None:intergenic | 50.0% | |
| ! | GGTGTTGAAGTTGTGGCCAT+AGG | - | chr6_1:95305578-95305597 | None:intergenic | 50.0% |
| GTGGCAATATGTGGAACTGC+AGG | - | chr6_1:95305599-95305618 | None:intergenic | 50.0% | |
| AACACCTGCAGTTCCACCTA+TGG | + | chr6_1:95305559-95305578 | Msa0899890:CDS | 50.0% | |
| !! | GACCACAGGTGTTGAAGTTG+CGG | - | chr6_1:95305651-95305670 | None:intergenic | 50.0% |
| TACCGTCGAAGAAGCTAGCG+AGG | + | chr6_1:95300075-95300094 | Msa0899890:CDS | 55.0% | |
| ! | TGCCTCGCTAGCTTCTTCGA+CGG | - | chr6_1:95300080-95300099 | None:intergenic | 55.0% |
| GCAACAGCAGGTGGTTCAAC+AGG | + | chr6_1:95300139-95300158 | Msa0899890:CDS | 55.0% | |
| !! | GGTTCAACAGGGGAGTGTCA+CGG | + | chr6_1:95300151-95300170 | Msa0899890:CDS | 55.0% |
| GAGTGTCACGGTGCAGAAAC+CGG | + | chr6_1:95300163-95300182 | Msa0899890:CDS | 55.0% | |
| GTGCAGAAACCGGTTGGAGT+GGG | + | chr6_1:95300173-95300192 | Msa0899890:CDS | 55.0% | |
| ! | AGTGGGTGGTTTGCCGATAC+CGG | + | chr6_1:95300190-95300209 | Msa0899890:CDS | 55.0% |
| ! | TGGTTTGCCGATACCGGTAC+CGG | + | chr6_1:95300196-95300215 | Msa0899890:CDS | 55.0% |
| ! | TGAATTGTCTGCACCGGCGT+TGG | - | chr6_1:95300224-95300243 | None:intergenic | 55.0% |
| GCATCTAACTGGACCCACAG+TGG | + | chr6_1:95301659-95301678 | Msa0899890:intron | 55.0% | |
| ! | CTGAGGGCTGCTCGCAATTT+TGG | - | chr6_1:95302175-95302194 | None:intergenic | 55.0% |
| CAAAATTGCGAGCAGCCCTC+AGG | + | chr6_1:95302173-95302192 | Msa0899890:CDS | 55.0% | |
| CACGCGATAGCAGGGTAAGT+AGG | + | chr6_1:95302199-95302218 | Msa0899890:intron | 55.0% | |
| GCGGCAAATGCTGCCATAAC+TGG | + | chr6_1:95303000-95303019 | Msa0899890:CDS | 55.0% | |
| !! | AGGGTGCTGGACCTTTGACA+AGG | - | chr6_1:95303567-95303586 | None:intergenic | 55.0% |
| GACAGGTGAAGCTGATGAGG+AGG | - | chr6_1:95303587-95303606 | None:intergenic | 55.0% | |
| TCACCTGTCTCAAGTGCTCG+TGG | + | chr6_1:95303598-95303617 | Msa0899890:CDS | 55.0% | |
| GTACCACGAGCACTTGAGAC+AGG | - | chr6_1:95303604-95303623 | None:intergenic | 55.0% | |
| CTGCAAGCGTCTTTGCAGCT+TGG | - | chr6_1:95303813-95303832 | None:intergenic | 55.0% | |
| CAAGCTGCAAAGACGCTTGC+AGG | + | chr6_1:95303811-95303830 | Msa0899890:CDS | 55.0% | |
| CCGAAAAGACCGATGTCTCC+TGG | + | chr6_1:95304394-95304413 | Msa0899890:CDS | 55.0% | |
| ATGACAGCTGCCTCTCCCAT+CGG | + | chr6_1:95304457-95304476 | Msa0899890:CDS | 55.0% | |
| TCTGTCACTCCTTGTCCGTC+AGG | - | chr6_1:95304520-95304539 | None:intergenic | 55.0% | |
| ! | TGACGGACAAGGAGTGACAG+AGG | + | chr6_1:95304519-95304538 | Msa0899890:CDS | 55.0% |
| TTCCCTTGCTGCCTGAAAGC+AGG | - | chr6_1:95305151-95305170 | None:intergenic | 55.0% | |
| CAGGCAGCAAGGGAAATTGG+TGG | + | chr6_1:95305156-95305175 | Msa0899890:intron | 55.0% | |
| CAGCAGGAAGCCACTAGCAA+TGG | + | chr6_1:95305497-95305516 | Msa0899890:CDS | 55.0% | |
| GTTGAAGTTGCGGCCATAGG+TGG | - | chr6_1:95305641-95305660 | None:intergenic | 55.0% | |
| ! | GGTGTTGAAGTTGCGGCCAT+AGG | - | chr6_1:95305644-95305663 | None:intergenic | 55.0% |
| GGTTACGACTGCGGCTGCAA+CGG | + | chr6_1:95300010-95300029 | Msa0899890:CDS | 60.0% | |
| GGCTGCAAATGCGACTGCGA+CGG | + | chr6_1:95300040-95300059 | Msa0899890:CDS | 60.0% | |
| GCAGTCGAAACCGCAACAGC+AGG | + | chr6_1:95300127-95300146 | Msa0899890:CDS | 60.0% | |
| GTCGAAACCGCAACAGCAGG+TGG | + | chr6_1:95300130-95300149 | Msa0899890:CDS | 60.0% | |
| GTCACGGTGCAGAAACCGGT+TGG | + | chr6_1:95300167-95300186 | Msa0899890:CDS | 60.0% | |
| GGTGCAGAAACCGGTTGGAG+TGG | + | chr6_1:95300172-95300191 | Msa0899890:CDS | 60.0% | |
| CAGAAACCGGTTGGAGTGGG+TGG | + | chr6_1:95300176-95300195 | Msa0899890:CDS | 60.0% | |
| GGCAAACCACCCACTCCAAC+CGG | - | chr6_1:95300185-95300204 | None:intergenic | 60.0% | |
| !! | GTTGGCACCGGTACCGGTAT+CGG | - | chr6_1:95300206-95300225 | None:intergenic | 60.0% |
| TCCTGTCATGGCAAGGTCGG+CGG | - | chr6_1:95301703-95301722 | None:intergenic | 60.0% | |
| TGCTATCGCGTGCTCCCTGA+GGG | - | chr6_1:95302191-95302210 | None:intergenic | 60.0% | |
| ! | TCAGGGAGCACGCGATAGCA+GGG | + | chr6_1:95302191-95302210 | Msa0899890:CDS | 60.0% |
| ATGTAGGAGGAGGCTGGGGA+AGG | + | chr6_1:95302781-95302800 | Msa0899890:intron | 60.0% | |
| ! | GAAGCTGATGAGGAGGGTGC+TGG | - | chr6_1:95303580-95303599 | None:intergenic | 60.0% |
| TGACAGCTGCCTCTCCCATC+GGG | + | chr6_1:95304458-95304477 | Msa0899890:CDS | 60.0% | |
| GCATGGGTCGTTTGCCCGAT+GGG | - | chr6_1:95304475-95304494 | None:intergenic | 60.0% | |
| GTTGAAGCTGCGGCCATAGG+TGG | - | chr6_1:95305542-95305561 | None:intergenic | 60.0% | |
| ! | GGTGTTGAAGCTGCGGCCAT+AGG | - | chr6_1:95305545-95305564 | None:intergenic | 60.0% |
| GTGGCCATAGGTGGAACTGC+AGG | - | chr6_1:95305566-95305585 | None:intergenic | 60.0% | |
| GGCCGCAACTTCAACACCTG+TGG | + | chr6_1:95305646-95305665 | Msa0899890:CDS | 60.0% | |
| TACGACTGCGGCTGCAACGG+CGG | + | chr6_1:95300013-95300032 | Msa0899890:CDS | 65.0% | |
| CAAATGCGACTGCGACGGCG+TGG | + | chr6_1:95300045-95300064 | Msa0899890:CDS | 65.0% | |
| GTCATGGCAAGGTCGGCGGA+CGG | - | chr6_1:95301699-95301718 | None:intergenic | 65.0% | |
| TCCGCCGACCTTGCCATGAC+AGG | + | chr6_1:95301699-95301718 | Msa0899890:intron | 65.0% | |
| CTGCTATCGCGTGCTCCCTG+AGG | - | chr6_1:95302192-95302211 | None:intergenic | 65.0% | |
| ! | CTCAGGGAGCACGCGATAGC+AGG | + | chr6_1:95302190-95302209 | Msa0899890:CDS | 65.0% |
| GGTCGTTTGCCCGATGGGAG+AGG | - | chr6_1:95304470-95304489 | None:intergenic | 65.0% | |
| GGCATGGGTCGTTTGCCCGA+TGG | - | chr6_1:95304476-95304495 | None:intergenic | 65.0% | |
| GCGGCCATAGGTGGAACTGC+AGG | - | chr6_1:95305632-95305651 | None:intergenic | 65.0% | |
| TGCGACTGCGACGGCGTGGT+TGG | + | chr6_1:95300049-95300068 | Msa0899890:CDS | 70.0% | |
| !! | ACCGGTACCGGTGCCAACGC+CGG | + | chr6_1:95300208-95300227 | Msa0899890:CDS | 70.0% |
| !! | ACCGGCGTTGGCACCGGTAC+CGG | - | chr6_1:95300212-95300231 | None:intergenic | 70.0% |
| !! | GTCTGCACCGGCGTTGGCAC+CGG | - | chr6_1:95300218-95300237 | None:intergenic | 70.0% |
| ATGGCAAGGTCGGCGGACGG+CGG | - | chr6_1:95301696-95301715 | None:intergenic | 70.0% | |
| TGCGGCTGCAACGGCGGCTG+CGG | + | chr6_1:95300019-95300038 | Msa0899890:CDS | 75.0% | |
| TGGCAAGGTCGGCGGACGGC+GGG | - | chr6_1:95301695-95301714 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95299584 | 95305730 | 95299584 | ID=Msa0899890;Name=Msa0899890 |
| chr6_1 | mRNA | 95299584 | 95305730 | 95299584 | ID=Msa0899890-mRNA-1;Parent=Msa0899890;Name=Msa0899890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=364|1|0.87|1|1|1|8|0|633 |
| chr6_1 | exon | 95299584 | 95300264 | 95299584 | ID=Msa0899890-mRNA-1:exon:16397;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95301359 | 95301466 | 95301359 | ID=Msa0899890-mRNA-1:exon:16398;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95302035 | 95302212 | 95302035 | ID=Msa0899890-mRNA-1:exon:16399;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95302787 | 95303137 | 95302787 | ID=Msa0899890-mRNA-1:exon:16400;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95303559 | 95303665 | 95303559 | ID=Msa0899890-mRNA-1:exon:16401;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95303738 | 95303832 | 95303738 | ID=Msa0899890-mRNA-1:exon:16402;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95304206 | 95304622 | 95304206 | ID=Msa0899890-mRNA-1:exon:16403;Parent=Msa0899890-mRNA-1 |
| chr6_1 | exon | 95305402 | 95305730 | 95305402 | ID=Msa0899890-mRNA-1:exon:16404;Parent=Msa0899890-mRNA-1 |
| chr6_1 | five_prime_UTR | 95299584 | 95299947 | 95299584 | ID=Msa0899890-mRNA-1:five_prime_utr;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95299948 | 95300264 | 95299948 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95301359 | 95301466 | 95301359 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95302035 | 95302212 | 95302035 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95302787 | 95303137 | 95302787 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95303559 | 95303665 | 95303559 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95303738 | 95303832 | 95303738 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95304206 | 95304622 | 95304206 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| chr6_1 | CDS | 95305402 | 95305730 | 95305402 | ID=Msa0899890-mRNA-1:cds;Parent=Msa0899890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
