AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901180 MtrunA17_Chr6g0487491 94.163 257 7 1 1 249 1 257 1.21e-180 496
Msa0901180 MtrunA17_Chr3g0135311 81.034 116 22 0 1 116 1 116 1.51e-67 212
Msa0901180 MtrunA17_Chr1g0152011 53.476 187 68 2 1 168 1 187 2.19e-65 206
Msa0901180 MtrunA17_Chr5g0400821 74.790 119 30 0 1 119 1 119 2.77e-65 205
Msa0901180 MtrunA17_Chr4g0028311 77.311 119 27 0 1 119 1 119 4.22e-65 205
Msa0901180 MtrunA17_Chr1g0151941 75.000 120 30 0 1 120 1 120 3.64e-64 200
Msa0901180 MtrunA17_Chr7g0264641 70.400 125 37 0 1 125 1 125 4.95e-63 198
Msa0901180 MtrunA17_Chr4g0072751 78.378 111 24 0 1 111 1 111 3.19e-62 198
Msa0901180 MtrunA17_Chr2g0327351 77.477 111 25 0 1 111 1 111 9.85e-62 196
Msa0901180 MtrunA17_Chr4g0054391 76.364 110 26 0 1 110 1 110 1.31e-60 192
Msa0901180 MtrunA17_Chr1g0187761 57.931 145 60 1 1 145 1 144 1.12e-52 171
Msa0901180 MtrunA17_Chr7g0275911 62.069 116 43 1 1 116 1 115 1.03e-49 163
Msa0901180 MtrunA17_Chr4g0039971 51.235 162 71 3 1 162 2 155 1.74e-49 166
Msa0901180 MtrunA17_Chr7g0274581 49.390 164 80 2 1 162 1 163 2.11e-49 161
Msa0901180 MtrunA17_Chr3g0115821 61.017 118 45 1 1 118 1 117 2.26e-49 165
Msa0901180 MtrunA17_Chr8g0346561 58.400 125 51 1 1 125 1 124 5.04e-49 163
Msa0901180 MtrunA17_Chr4g0037141 48.171 164 81 3 1 163 1 161 5.27e-49 162
Msa0901180 MtrunA17_Chr8g0349261 59.664 119 47 1 1 118 1 119 5.66e-49 163
Msa0901180 MtrunA17_Chr6g0452271 63.559 118 42 1 1 118 1 117 7.58e-49 164
Msa0901180 MtrunA17_Chr7g0261281 53.061 147 61 2 1 147 1 139 7.81e-49 162
Msa0901180 MtrunA17_Chr5g0410961 61.017 118 45 1 1 118 1 117 8.38e-49 164
Msa0901180 MtrunA17_Chr7g0217221 59.091 132 51 2 1 132 1 129 9.51e-49 161
Msa0901180 MtrunA17_Chr1g0203411 62.069 116 43 1 1 116 1 115 1.18e-48 162
Msa0901180 MtrunA17_Chr3g0103281 64.655 116 40 1 1 116 1 115 2.30e-48 162
Msa0901180 MtrunA17_Chr4g0060721 57.031 128 54 1 1 128 2 128 1.78e-47 160
Msa0901180 MtrunA17_Chr2g0323411 60.169 118 46 1 1 118 1 117 2.85e-47 159
Msa0901180 MtrunA17_Chr7g0217741 60.345 116 45 1 1 116 1 115 3.02e-47 159
Msa0901180 MtrunA17_Chr1g0167691 58.475 118 48 1 1 118 1 117 3.59e-47 157
Msa0901180 MtrunA17_Chr4g0042671 61.207 116 44 1 1 116 1 115 1.21e-46 160
Msa0901180 MtrunA17_Chr1g0167661 58.475 118 48 1 1 118 1 117 1.36e-46 155
Msa0901180 MtrunA17_Chr4g0048511 59.664 119 46 2 1 118 1 118 2.11e-46 158
Msa0901180 MtrunA17_Chr3g0131121 47.500 160 76 2 1 160 1 152 4.52e-46 155
Msa0901180 MtrunA17_Chr4g0068061 59.483 116 46 1 1 116 1 115 4.59e-46 156
Msa0901180 MtrunA17_Chr6g0453471 59.483 116 46 1 1 116 1 115 5.80e-46 157
Msa0901180 MtrunA17_Chr8g0385321 58.621 116 47 1 1 116 1 115 9.07e-46 155
Msa0901180 MtrunA17_Chr7g0228891 60.345 116 45 1 1 116 1 115 1.93e-45 153
Msa0901180 MtrunA17_Chr1g0194951 59.483 116 46 1 1 116 1 115 3.09e-45 155
Msa0901180 MtrunA17_Chr2g0281071 57.983 119 48 2 1 118 1 118 3.09e-45 154
Msa0901180 MtrunA17_Chr4g0070611 57.759 116 48 1 1 116 1 115 4.44e-45 153
Msa0901180 MtrunA17_Chr7g0254411 56.000 125 54 1 1 125 1 124 5.09e-45 154
Msa0901180 MtrunA17_Chr3g0092401 56.693 127 54 1 1 127 2 127 5.17e-45 153
Msa0901180 MtrunA17_Chr4g0070641 57.759 116 48 1 1 116 1 115 6.00e-45 148
Msa0901180 MtrunA17_Chr5g0395281 59.322 118 47 1 1 118 1 117 6.04e-45 152
Msa0901180 MtrunA17_Chr1g0193371 58.621 116 47 1 1 116 1 115 1.41e-44 153
Msa0901180 MtrunA17_Chr7g0270891 60.345 116 45 1 1 116 1 115 2.49e-44 152
Msa0901180 MtrunA17_Chr3g0121241 55.263 114 50 1 5 118 35 147 3.57e-44 150
Msa0901180 MtrunA17_Chr4g0022901 58.824 119 47 2 1 118 1 118 5.56e-44 149
Msa0901180 MtrunA17_Chr6g0453211 61.261 111 42 1 1 111 1 110 9.22e-44 150
Msa0901180 MtrunA17_Chr5g0435101 55.172 116 51 1 3 118 2 116 9.32e-44 147
Msa0901180 MtrunA17_Chr4g0057031 56.780 118 50 1 1 118 1 117 1.08e-43 148
Msa0901180 MtrunA17_Chr1g0193801 58.621 116 47 1 1 116 1 115 1.09e-43 151
Msa0901180 MtrunA17_Chr8g0387421 57.759 116 48 1 1 116 1 115 1.32e-43 149
Msa0901180 MtrunA17_Chr2g0311221 61.818 110 41 1 2 111 4 112 1.79e-43 149
Msa0901180 MtrunA17_Chr4g0022931 58.974 117 46 2 1 116 1 116 4.26e-43 147
Msa0901180 MtrunA17_Chr4g0058631 55.932 118 51 1 1 118 1 117 8.04e-43 149
Msa0901180 MtrunA17_Chr4g0022911 57.143 119 49 2 1 118 1 118 1.01e-42 146
Msa0901180 MtrunA17_Chr2g0323351 46.405 153 73 2 1 153 1 144 2.06e-42 144
Msa0901180 MtrunA17_Chr5g0397231 57.658 111 46 1 1 111 1 110 2.80e-42 147
Msa0901180 MtrunA17_Chr3g0110351 56.034 116 50 1 1 116 1 115 3.29e-42 145
Msa0901180 MtrunA17_Chr5g0434571 56.034 116 50 1 1 116 37 151 6.46e-42 146
Msa0901180 MtrunA17_Chr3g0117091 56.780 118 50 1 1 118 1 117 7.89e-42 145
Msa0901180 MtrunA17_Chr2g0330041 56.303 119 51 1 1 119 1 118 9.98e-42 147
Msa0901180 MtrunA17_Chr8g0342541 57.759 116 48 1 1 116 1 115 1.52e-41 145
Msa0901180 MtrunA17_Chr4g0022891 57.018 114 48 1 1 114 1 113 3.33e-41 141
Msa0901180 MtrunA17_Chr7g0269831 38.249 217 108 4 1 204 1 204 3.78e-41 144
Msa0901180 MtrunA17_Chr1g0211161 56.034 116 50 1 3 118 4 118 4.89e-41 140
Msa0901180 MtrunA17_Chr8g0342481 54.622 119 54 0 1 119 1 119 5.76e-41 145
Msa0901180 MtrunA17_Chr2g0309911 57.895 114 47 1 6 119 5 117 5.86e-41 142
Msa0901180 MtrunA17_Chr7g0271241 59.091 110 44 1 1 110 1 109 8.47e-41 144
Msa0901180 MtrunA17_Chr8g0354661 55.046 109 48 1 12 120 37 144 9.42e-41 147
Msa0901180 MtrunA17_Chr7g0240821 40.191 209 100 6 16 201 5 211 1.25e-40 139
Msa0901180 MtrunA17_Chr8g0342521 49.645 141 63 2 1 134 1 140 1.61e-40 142
Msa0901180 MtrunA17_Chr6g0470971 47.917 144 73 2 4 147 6 147 1.89e-39 138
Msa0901180 MtrunA17_Chr4g0022881 53.043 115 53 1 1 115 1 114 2.24e-39 136
Msa0901180 MtrunA17_Chr1g0203441 53.846 117 52 2 1 116 1 116 8.67e-38 133
Msa0901180 MtrunA17_Chr3g0080861 53.211 109 50 1 12 120 37 144 9.32e-38 138
Msa0901180 MtrunA17_Chr4g0055981 41.765 170 77 3 9 157 52 220 3.98e-37 130
Msa0901180 MtrunA17_Chr5g0434931 56.481 108 46 1 12 119 35 141 5.37e-37 131
Msa0901180 MtrunA17_Chr8g0343831 52.586 116 50 2 1 116 1 111 1.69e-36 129
Msa0901180 MtrunA17_Chr4g0044421 51.282 117 55 2 3 118 2 117 1.88e-36 127
Msa0901180 MtrunA17_Chr3g0099131 50.450 111 54 1 10 120 39 148 2.61e-36 134
Msa0901180 MtrunA17_Chr5g0434911 53.097 113 52 1 7 119 16 127 5.04e-36 129
Msa0901180 MtrunA17_Chr1g0209661 53.211 109 50 1 8 116 23 130 7.09e-36 129
Msa0901180 MtrunA17_Chr5g0417821 53.271 107 49 1 12 118 7 112 1.03e-35 128
Msa0901180 MtrunA17_Chr2g0328771 51.724 116 55 1 12 127 20 134 1.15e-35 129
Msa0901180 MtrunA17_Chr3g0088461 54.128 109 49 1 8 116 18 125 1.53e-35 129
Msa0901180 MtrunA17_Chr1g0194301 53.211 109 50 1 8 116 29 136 1.66e-35 127
Msa0901180 MtrunA17_Chr6g0450101 48.837 129 63 2 1 127 1 128 1.94e-35 125
Msa0901180 MtrunA17_Chr7g0228231 55.769 104 45 1 12 115 14 116 5.81e-35 124
Msa0901180 MtrunA17_Chr4g0032401 53.774 106 48 1 11 116 16 120 1.04e-34 127
Msa0901180 MtrunA17_Chr5g0434831 53.271 107 49 1 12 118 7 112 1.68e-34 122
Msa0901180 MtrunA17_Chr1g0186061 50.450 111 54 1 6 116 14 123 2.01e-34 124
Msa0901180 MtrunA17_Chr7g0220341 54.545 110 47 2 12 119 25 133 2.47e-34 124
Msa0901180 MtrunA17_Chr7g0228991 54.630 108 48 1 12 119 29 135 8.53e-34 123
Msa0901180 MtrunA17_Chr1g0192411 47.500 120 62 1 1 120 1 119 2.92e-33 124
Msa0901180 MtrunA17_Chr1g0194291 50.435 115 56 1 2 116 11 124 3.90e-33 121
Msa0901180 MtrunA17_Chr2g0322521 50.893 112 54 1 9 120 26 136 7.56e-33 123
Msa0901180 MtrunA17_Chr1g0154031 50.926 108 52 1 12 119 76 182 1.21e-32 123
Msa0901180 MtrunA17_Chr8g0360111 53.922 102 46 1 12 113 25 125 1.73e-32 119
Msa0901180 MtrunA17_Chr1g0168661 52.885 104 48 1 13 116 22 124 1.83e-32 119
Msa0901180 MtrunA17_Chr5g0434841 51.402 107 51 1 12 118 20 125 2.43e-32 120
Msa0901180 MtrunA17_Chr4g0042611 57.303 89 37 1 1 89 1 88 6.58e-32 112
Msa0901180 MtrunA17_Chr5g0440781 40.260 154 84 4 12 158 12 164 1.40e-31 115
Msa0901180 MtrunA17_Chr5g0440761 40.523 153 83 4 13 158 13 164 3.64e-31 115
Msa0901180 MtrunA17_Chr2g0294811 54.839 93 41 1 1 93 1 92 4.03e-31 111
Msa0901180 MtrunA17_Chr8g0334881 49.541 109 53 2 8 115 6 113 6.04e-31 116
Msa0901180 MtrunA17_Chr5g0441141 40.260 154 84 4 12 158 12 164 7.05e-31 115
Msa0901180 MtrunA17_Chr1g0180391 51.429 105 50 1 12 116 19 122 1.20e-30 113
Msa0901180 MtrunA17_Chr5g0441131 48.182 110 55 2 12 120 9 117 6.81e-30 110
Msa0901180 MtrunA17_Chr4g0068921 48.031 127 63 2 8 134 20 143 1.08e-29 110
Msa0901180 MtrunA17_Chr2g0293911 52.778 108 50 1 8 115 20 126 1.97e-29 112
Msa0901180 MtrunA17_Chr2g0327821 46.296 108 57 1 9 116 3 109 2.41e-29 110
Msa0901180 MtrunA17_Chr7g0247131 63.514 74 27 0 43 116 8 81 3.07e-29 110
Msa0901180 MtrunA17_Chr4g0008551 50.909 110 51 3 11 120 36 142 2.84e-28 110
Msa0901180 MtrunA17_Chr4g0013361 45.872 109 57 2 8 115 6 113 5.04e-28 108
Msa0901180 MtrunA17_Chr8g0342461 54.444 90 41 0 1 90 1 90 1.28e-27 103
Msa0901180 MtrunA17_Chr8g0342511 56.322 87 37 1 1 87 1 86 1.76e-27 101
Msa0901180 MtrunA17_Chr8g0342471 54.444 90 41 0 1 90 1 90 2.31e-27 102
Msa0901180 MtrunA17_Chr3g0133601 48.649 111 55 2 14 124 37 145 2.97e-27 104
Msa0901180 MtrunA17_Chr8g0342531 53.333 90 41 1 1 90 1 89 7.56e-27 102
Msa0901180 MtrunA17_Chr5g0395221 53.933 89 40 1 1 89 1 88 1.20e-26 99.0
Msa0901180 MtrunA17_Chr4g0030881 43.243 111 55 2 13 116 8 117 1.73e-26 103
Msa0901180 MtrunA17_Chr6g0454921 41.259 143 80 3 14 156 15 153 1.80e-26 102
Msa0901180 MtrunA17_Chr3g0099141 50.000 88 43 1 8 95 36 122 2.04e-26 100
Msa0901180 MtrunA17_Chr5g0401731 47.573 103 52 2 14 116 15 115 8.34e-26 103
Msa0901180 MtrunA17_Chr4g0053431 49.515 103 50 2 14 116 5 105 1.54e-25 101
Msa0901180 MtrunA17_Chr7g0229131 57.333 75 32 0 46 120 5 79 7.90e-25 97.1
Msa0901180 MtrunA17_Chr5g0434901 61.111 72 28 0 43 114 3 74 1.74e-24 94.4
Msa0901180 MtrunA17_Chr2g0323321 47.312 93 47 2 1 93 1 91 2.58e-24 93.6
Msa0901180 MtrunA17_Chr4g0058991 42.202 109 61 2 9 117 204 310 4.33e-24 100
Msa0901180 MtrunA17_Chr7g0229101 60.870 69 27 0 46 114 5 73 5.91e-24 95.5
Msa0901180 MtrunA17_Chr3g0093811 61.111 72 28 0 45 116 14 85 5.62e-23 94.4
Msa0901180 MtrunA17_Chr5g0429661 38.462 117 69 3 1 116 108 222 3.27e-22 93.6
Msa0901180 MtrunA17_Chr3g0117511 40.171 117 66 3 3 117 170 284 6.83e-22 94.0
Msa0901180 MtrunA17_Chr5g0437321 47.000 100 51 2 14 113 19 116 1.58e-21 90.9
Msa0901180 MtrunA17_Chr7g0238631 45.631 103 54 2 14 116 113 213 1.64e-21 93.2
Msa0901180 MtrunA17_Chr5g0425591 45.882 85 44 2 13 96 10 93 2.76e-21 85.1
Msa0901180 MtrunA17_Chr5g0417621 34.810 158 92 4 10 160 130 283 7.29e-21 90.9
Msa0901180 MtrunA17_Chr6g0480581 43.269 104 53 3 14 115 4 103 1.49e-20 87.4
Msa0901180 MtrunA17_Chr7g0238651 36.066 122 77 1 14 134 7 128 8.60e-20 87.0
Msa0901180 MtrunA17_Chr6g0453751 43.011 93 45 2 12 96 20 112 1.11e-19 82.0
Msa0901180 MtrunA17_Chr6g0460661 41.346 104 55 3 10 111 12 111 1.18e-19 83.2
Msa0901180 MtrunA17_Chr5g0397841 46.465 99 50 3 12 110 109 204 1.77e-19 87.0
Msa0901180 MtrunA17_Chr1g0157731 39.806 103 60 2 14 116 91 191 2.65e-19 87.0
Msa0901180 MtrunA17_Chr4g0042501 40.909 110 63 2 14 123 105 212 3.99e-19 85.9
Msa0901180 MtrunA17_Chr3g0125801 42.202 109 61 2 8 116 10 116 5.29e-19 84.0
Msa0901180 MtrunA17_Chr3g0139671 39.806 103 60 2 14 116 85 185 6.50e-19 85.9
Msa0901180 MtrunA17_Chr7g0228531 42.241 116 60 4 12 123 218 330 1.40e-18 84.3
Msa0901180 MtrunA17_Chr8g0362231 40.541 111 61 3 17 127 25 130 6.90e-18 82.4
Msa0901180 MtrunA17_Chr5g0416341 39.831 118 68 3 17 133 29 144 7.75e-18 82.0
Msa0901180 MtrunA17_Chr7g0254261 36.111 144 77 3 14 144 89 230 6.00e-17 79.0
Msa0901180 MtrunA17_Chr7g0228401 42.667 75 42 1 37 111 301 374 1.78e-16 78.2
Msa0901180 MtrunA17_Chr6g0460671 39.806 103 60 2 14 116 99 199 7.05e-16 75.9
Msa0901180 MtrunA17_Chr7g0228481 39.655 116 63 4 12 123 218 330 9.79e-16 75.9
Msa0901180 MtrunA17_Chr1g0177901 47.619 63 33 0 49 111 27 89 1.30e-15 73.2
Msa0901180 MtrunA17_Chr7g0233061 44.444 63 35 0 49 111 211 273 1.14e-14 72.4
Msa0901180 MtrunA17_Chr7g0247141 57.447 47 20 0 1 47 1 47 1.29e-14 66.6
Msa0901180 MtrunA17_Chr1g0193901 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
Msa0901180 MtrunA17_Chr1g0193891 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
Msa0901180 MtrunA17_Chr1g0193871 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
Msa0901180 MtrunA17_Chr1g0193881 48.333 60 29 2 11 69 10 68 6.70e-13 63.5
Msa0901180 MtrunA17_Chr5g0434871 57.778 45 19 0 75 119 2 46 7.93e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901180 AT3G49690.1 75.424 118 29 0 1 118 1 118 9.88e-65 204
Msa0901180 AT5G65790.1 76.271 118 28 0 1 118 1 118 1.55e-64 206
Msa0901180 AT2G36890.1 75.630 119 29 0 1 119 1 119 1.10e-63 201
Msa0901180 AT5G23000.1 77.586 116 26 0 1 116 1 116 1.15e-63 202
Msa0901180 AT4G37780.1 72.269 119 33 0 1 119 1 119 1.93e-63 201
Msa0901180 AT2G36890.2 75.630 119 29 0 1 119 42 160 1.99e-63 202
Msa0901180 AT5G57620.1 73.950 119 31 0 1 119 1 119 3.62e-62 198
Msa0901180 AT5G16770.4 41.453 234 125 5 1 234 1 222 1.16e-50 168
Msa0901180 AT5G16770.3 41.453 234 125 5 1 234 1 222 1.16e-50 168
Msa0901180 AT5G16770.1 41.453 234 125 5 1 234 1 222 4.00e-50 167
Msa0901180 AT5G16770.2 41.453 234 125 5 1 234 1 222 4.00e-50 167
Msa0901180 AT4G28110.1 61.864 118 44 1 1 118 1 117 5.13e-50 165
Msa0901180 AT3G47600.1 54.000 150 60 2 1 142 1 149 4.74e-49 164
Msa0901180 AT3G23250.1 62.069 116 43 1 1 116 1 115 4.89e-49 163
Msa0901180 AT3G02940.2 59.322 118 47 1 1 118 1 117 6.97e-49 163
Msa0901180 AT3G01140.2 45.902 183 92 3 1 180 1 179 9.97e-49 164
Msa0901180 AT3G61250.1 58.824 119 48 1 1 119 1 118 1.33e-48 162
Msa0901180 AT5G62470.2 55.862 145 61 2 1 143 1 144 1.43e-48 164
Msa0901180 AT3G02940.1 59.322 118 47 1 1 118 1 117 1.49e-48 163
Msa0901180 AT3G02940.3 59.322 118 47 1 1 118 1 117 1.49e-48 163
Msa0901180 AT2G31180.1 54.110 146 64 2 1 144 1 145 1.52e-48 160
Msa0901180 AT1G16490.1 61.739 115 43 1 2 116 4 117 3.48e-48 160
Msa0901180 AT5G15310.4 61.017 118 45 1 1 118 1 117 4.06e-48 159
Msa0901180 AT5G56110.1 63.793 116 41 1 1 116 1 115 4.39e-48 161
Msa0901180 AT1G22640.1 57.143 119 50 1 1 119 1 118 6.55e-48 159
Msa0901180 AT4G34990.1 48.125 160 73 2 1 151 1 159 6.93e-48 160
Msa0901180 AT5G15310.1 61.017 118 45 1 1 118 1 117 7.99e-48 161
Msa0901180 AT5G15310.2 61.017 118 45 1 1 118 1 117 1.00e-47 160
Msa0901180 AT1G79180.1 59.677 124 49 1 2 125 4 126 1.06e-47 160
Msa0901180 AT5G49330.1 54.676 139 51 2 1 139 1 127 1.62e-47 160
Msa0901180 AT4G17785.2 61.345 119 44 2 1 118 1 118 2.07e-47 160
Msa0901180 AT4G17785.1 61.345 119 44 2 1 118 1 118 2.91e-47 160
Msa0901180 AT3G12820.1 62.931 116 42 1 3 118 5 119 3.01e-47 157
Msa0901180 AT2G47460.1 61.207 116 44 1 1 116 1 115 3.81e-47 160
Msa0901180 AT1G06180.1 55.797 138 58 2 1 138 1 135 4.64e-47 157
Msa0901180 AT4G21440.1 59.322 118 47 1 1 118 1 117 5.76e-47 159
Msa0901180 AT1G56160.1 56.522 138 58 2 2 139 4 139 6.68e-47 158
Msa0901180 AT5G62470.1 55.862 145 60 3 1 143 1 143 7.86e-47 159
Msa0901180 AT1G74650.1 61.017 118 45 1 1 118 1 117 1.81e-46 157
Msa0901180 AT2G16720.1 57.143 119 50 1 1 119 1 118 1.99e-46 155
Msa0901180 AT3G62610.1 61.207 116 44 1 1 116 1 115 2.34e-46 157
Msa0901180 AT4G38620.1 56.780 118 50 1 1 118 1 117 2.76e-46 156
Msa0901180 AT4G09460.1 57.143 119 50 1 1 119 1 118 4.66e-46 154
Msa0901180 AT1G08810.1 61.207 116 44 1 1 116 1 115 8.25e-46 154
Msa0901180 AT3G01140.1 45.000 180 92 3 4 180 47 222 1.39e-45 157
Msa0901180 AT5G65230.1 57.627 118 49 1 1 118 1 117 1.45e-45 155
Msa0901180 AT3G13540.1 57.895 114 47 1 5 118 16 128 1.86e-45 152
Msa0901180 AT5G10280.1 57.627 118 49 1 1 118 1 117 3.45e-45 154
Msa0901180 AT4G01680.3 59.483 116 46 1 1 116 1 115 5.48e-45 151
Msa0901180 AT1G34670.1 58.475 118 48 1 1 118 1 117 5.77e-45 154
Msa0901180 AT3G28470.1 62.162 111 41 1 1 111 1 110 5.81e-45 153
Msa0901180 AT3G28910.1 61.207 116 44 1 1 116 1 115 6.10e-45 153
Msa0901180 AT1G35515.1 55.932 118 51 1 1 118 1 117 1.78e-44 149
Msa0901180 AT4G05100.1 57.983 119 48 2 1 118 1 118 3.13e-44 152
Msa0901180 AT4G01680.1 59.483 116 46 1 1 116 1 115 3.39e-44 152
Msa0901180 AT4G12350.1 57.627 118 49 1 1 118 1 117 3.73e-44 150
Msa0901180 AT5G14340.1 59.829 117 46 1 1 117 13 128 6.69e-44 149
Msa0901180 AT4G22680.1 55.932 118 51 1 1 118 1 117 3.14e-43 147
Msa0901180 AT1G57560.1 47.771 157 64 2 1 140 1 156 3.29e-43 149
Msa0901180 AT1G63910.1 56.897 116 49 1 1 116 1 115 5.35e-43 149
Msa0901180 AT1G57560.2 56.780 118 50 1 1 118 1 117 7.14e-43 147
Msa0901180 AT3G13890.2 57.143 119 50 1 1 119 1 118 9.65e-43 149
Msa0901180 AT5G26660.1 56.897 116 49 1 1 116 1 115 2.34e-42 147
Msa0901180 AT5G61420.2 43.713 167 78 3 1 153 1 165 4.12e-42 147
Msa0901180 AT1G09540.1 56.897 116 49 1 1 116 1 115 5.15e-42 147
Msa0901180 AT5G07690.1 56.522 115 49 1 1 115 1 114 7.20e-42 146
Msa0901180 AT1G66230.1 56.034 116 50 1 1 116 1 115 1.28e-41 144
Msa0901180 AT5G16600.1 56.034 116 50 1 1 116 1 115 2.17e-41 144
Msa0901180 AT1G79180.2 46.497 157 50 2 2 125 4 159 2.80e-41 144
Msa0901180 AT1G74080.1 54.237 118 53 1 1 118 1 117 4.13e-41 144
Msa0901180 AT5G62320.1 52.033 123 53 1 2 118 3 125 4.77e-41 141
Msa0901180 AT5G60890.1 55.172 116 51 1 1 116 1 115 5.81e-41 142
Msa0901180 AT4G01680.2 53.906 128 46 2 1 116 1 127 8.49e-41 143
Msa0901180 AT5G07700.1 53.390 118 54 1 1 118 1 117 6.53e-40 140
Msa0901180 AT5G07700.2 53.390 118 54 1 1 118 1 117 6.53e-40 140
Msa0901180 AT1G74430.1 56.034 116 50 1 1 116 1 115 7.44e-40 139
Msa0901180 AT3G12720.1 55.263 114 50 1 6 119 16 128 9.04e-40 139
Msa0901180 AT3G13890.1 53.125 128 50 2 1 119 1 127 9.88e-40 141
Msa0901180 AT5G54230.1 33.700 273 124 6 1 231 1 258 1.13e-39 140
Msa0901180 AT1G18570.1 53.782 119 53 2 1 118 1 118 9.65e-39 138
Msa0901180 AT5G06100.1 52.212 113 53 1 8 120 28 139 1.22e-38 140
Msa0901180 AT5G35550.1 39.000 200 85 6 9 198 11 183 2.71e-38 134
Msa0901180 AT5G52600.1 57.407 108 45 1 9 116 9 115 2.88e-38 132
Msa0901180 AT5G55020.1 54.128 109 49 1 12 120 26 133 3.07e-38 140
Msa0901180 AT5G06100.5 52.212 113 53 1 8 120 28 139 4.37e-38 139
Msa0901180 AT5G06100.2 52.212 113 53 1 8 120 28 139 4.37e-38 139
Msa0901180 AT5G06100.3 52.212 113 53 1 8 120 28 139 4.37e-38 139
Msa0901180 AT5G06100.4 52.212 113 53 1 8 120 28 139 4.37e-38 139
Msa0901180 AT5G40330.1 53.571 112 51 1 13 124 13 123 5.25e-38 132
Msa0901180 AT5G14750.1 55.769 104 45 1 13 116 17 119 1.59e-37 131
Msa0901180 AT3G27920.1 53.571 112 51 1 13 124 15 125 1.97e-37 131
Msa0901180 AT1G18710.1 52.586 116 54 1 1 116 1 115 2.05e-37 132
Msa0901180 AT2G32460.1 52.294 109 51 1 12 120 18 125 2.17e-37 137
Msa0901180 AT2G32460.2 52.294 109 51 1 12 120 6 113 2.33e-37 137
Msa0901180 AT4G26930.1 55.769 104 45 1 12 115 19 121 3.48e-37 135
Msa0901180 AT3G27810.1 46.667 135 71 1 9 143 17 150 4.59e-37 130
Msa0901180 AT3G11440.2 48.214 112 57 1 9 120 38 148 1.98e-36 134
Msa0901180 AT3G11440.3 48.214 112 57 1 9 120 38 148 8.44e-36 134
Msa0901180 AT3G11440.4 48.214 112 57 1 9 120 38 148 8.44e-36 134
Msa0901180 AT3G11440.1 48.214 112 57 1 9 120 38 148 8.44e-36 134
Msa0901180 AT5G12870.1 54.717 106 47 1 11 116 17 121 1.34e-35 128
Msa0901180 AT5G40350.1 52.174 115 54 1 10 124 15 128 1.97e-35 125
Msa0901180 AT1G66370.1 50.427 117 53 2 1 117 1 112 3.43e-35 126
Msa0901180 AT1G66380.1 54.717 106 47 1 12 117 8 112 1.19e-34 121
Msa0901180 AT5G52260.1 47.287 129 67 1 9 137 9 136 1.31e-34 125
Msa0901180 AT3G01530.1 39.355 155 93 1 8 162 21 174 1.48e-34 123
Msa0901180 AT1G25340.1 34.802 227 143 3 13 239 19 240 1.68e-34 125
Msa0901180 AT3G48920.1 38.798 183 83 3 9 165 15 194 3.11e-34 124
Msa0901180 AT1G48000.1 56.190 105 45 1 11 115 31 134 6.63e-34 122
Msa0901180 AT3G08500.1 53.211 109 50 1 8 116 26 133 6.87e-34 125
Msa0901180 AT4G25560.1 48.696 115 58 1 11 125 9 122 9.94e-34 123
Msa0901180 AT1G68320.1 52.830 106 49 1 11 116 18 122 3.69e-33 122
Msa0901180 AT2G26960.1 47.664 107 55 1 9 115 17 122 4.14e-33 124
Msa0901180 AT2G47190.1 35.577 208 114 6 8 207 16 211 4.60e-33 121
Msa0901180 AT3G24310.1 54.808 104 46 1 13 116 19 121 5.47e-33 121
Msa0901180 AT1G56650.1 52.830 106 49 1 12 117 8 112 6.27e-33 120
Msa0901180 AT3G30210.1 53.398 103 47 1 13 115 28 129 9.78e-33 120
Msa0901180 AT1G66390.1 53.774 106 48 1 12 117 8 112 1.27e-32 119
Msa0901180 AT4G13480.1 53.846 104 47 1 13 116 7 109 1.77e-32 119
Msa0901180 AT3G06490.1 56.481 108 46 1 8 115 15 121 7.36e-31 117
Msa0901180 AT3G53200.1 50.000 110 54 1 12 121 9 117 1.88e-30 114
Msa0901180 AT1G25340.2 33.480 227 141 4 13 239 19 235 9.84e-30 112
Msa0901180 AT1G25340.3 33.480 227 141 4 13 239 19 235 1.62e-29 113
Msa0901180 AT5G59780.3 44.444 108 59 1 9 116 5 111 2.44e-29 110
Msa0901180 AT3G46130.1 46.154 104 55 1 13 116 10 112 3.88e-29 110
Msa0901180 AT3G60460.1 47.222 108 55 2 9 115 8 114 2.43e-28 109
Msa0901180 AT5G49620.1 54.808 104 46 1 12 115 26 128 4.90e-28 108
Msa0901180 AT5G26660.2 60.274 73 29 0 44 116 12 84 9.69e-28 108
Msa0901180 AT5G14750.3 58.974 78 29 1 39 116 11 85 1.47e-27 104
Msa0901180 AT3G47600.2 50.476 105 44 1 46 142 39 143 1.91e-27 107
Msa0901180 AT5G35550.2 44.915 118 53 2 39 146 43 158 3.20e-27 105
Msa0901180 AT2G23290.1 51.456 103 48 2 14 116 13 113 7.47e-27 105
Msa0901180 AT3G09230.1 46.364 110 56 3 9 118 51 157 1.49e-26 106
Msa0901180 AT3G12820.2 62.857 70 26 0 49 118 2 71 3.57e-26 101
Msa0901180 AT3G27810.2 45.545 101 55 0 43 143 1 101 5.28e-26 100
Msa0901180 AT4G37260.1 43.902 123 59 3 14 128 13 133 2.18e-25 102
Msa0901180 AT3G55730.1 48.182 110 54 3 9 118 52 158 2.20e-25 103
Msa0901180 AT3G50060.1 45.946 111 58 2 14 124 6 114 2.87e-25 101
Msa0901180 AT1G66380.3 61.644 73 28 0 45 117 7 79 6.88e-25 95.5
Msa0901180 AT5G40350.2 54.430 79 36 0 46 124 5 83 8.44e-25 97.1
Msa0901180 AT5G49620.2 48.305 118 46 2 12 115 26 142 1.71e-24 99.8
Msa0901180 AT2G26950.1 41.346 104 60 1 9 112 13 115 1.72e-24 100
Msa0901180 AT3G46130.4 54.054 74 34 0 43 116 17 90 2.03e-24 97.8
Msa0901180 AT5G59780.2 54.054 74 34 0 43 116 17 90 2.14e-24 97.4
Msa0901180 AT3G46130.3 55.556 72 32 0 45 116 9 80 3.07e-24 97.1
Msa0901180 AT3G53200.2 53.165 79 37 0 43 121 6 84 5.67e-24 95.9
Msa0901180 AT3G27785.1 36.296 135 84 2 9 143 184 316 1.53e-23 98.6
Msa0901180 AT1G71030.2 46.237 93 49 1 52 143 5 97 2.56e-23 93.6
Msa0901180 AT2G39880.1 47.222 108 54 3 9 116 46 150 2.57e-23 97.4
Msa0901180 AT1G71030.1 46.237 93 49 1 52 143 19 111 3.21e-23 93.6
Msa0901180 AT5G40360.1 38.462 117 70 2 9 125 153 267 3.59e-23 96.7
Msa0901180 AT5G67300.1 46.602 103 53 2 14 116 6 106 7.35e-23 95.1
Msa0901180 AT1G18960.1 44.144 111 55 3 6 116 5 108 2.17e-22 94.0
Msa0901180 AT5G02320.1 44.660 103 55 2 14 116 127 227 4.45e-22 95.1
Msa0901180 AT5G02320.2 44.660 103 55 2 14 116 127 227 4.45e-22 95.1
Msa0901180 AT5G02320.3 44.660 103 55 2 14 116 67 167 5.67e-22 94.7
Msa0901180 AT4G18770.1 38.532 109 65 2 9 117 212 318 8.81e-22 93.6
Msa0901180 AT1G69560.1 41.739 115 65 2 9 123 102 214 1.50e-21 92.0
Msa0901180 AT1G69560.2 41.739 115 65 2 9 123 118 230 1.57e-21 92.0
Msa0901180 AT3G09370.2 42.718 103 57 2 14 116 135 235 3.98e-21 92.4
Msa0901180 AT3G09370.1 42.718 103 57 2 14 116 130 230 4.00e-21 92.4
Msa0901180 AT3G09370.3 42.718 103 57 2 14 116 143 243 5.46e-21 92.0
Msa0901180 AT5G58850.1 39.831 118 65 4 14 127 105 220 1.74e-20 90.1
Msa0901180 AT1G17950.1 42.718 103 57 2 14 116 5 105 4.57e-20 86.7
Msa0901180 AT1G26780.1 40.000 120 70 2 14 133 98 215 5.49e-20 87.0
Msa0901180 AT2G25230.1 30.045 223 131 5 9 231 21 218 6.28e-20 85.9
Msa0901180 AT1G22640.3 55.738 61 27 0 59 119 1 61 6.54e-20 85.1
Msa0901180 AT1G73410.1 44.660 103 55 2 14 116 6 106 1.01e-19 85.5
Msa0901180 AT1G26780.2 40.000 120 70 2 14 133 98 215 1.10e-19 87.0
Msa0901180 AT4G33450.1 39.394 132 71 4 3 134 13 135 1.36e-19 85.1
Msa0901180 AT1G73410.2 44.660 103 55 2 14 116 6 106 1.77e-19 84.0
Msa0901180 AT1G66380.2 46.341 82 43 1 12 93 8 88 1.97e-19 81.3
Msa0901180 AT3G23250.2 60.345 58 23 0 59 116 1 58 3.17e-19 84.0
Msa0901180 AT5G11510.3 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
Msa0901180 AT5G11510.1 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
Msa0901180 AT5G11510.4 37.864 103 62 2 14 116 81 181 7.97e-19 85.9
Msa0901180 AT5G11510.2 36.792 106 65 2 11 116 78 181 1.08e-18 85.5
Msa0901180 AT5G11510.5 36.792 106 65 2 11 116 78 181 1.11e-18 85.5
Msa0901180 AT5G14750.4 56.897 58 25 0 59 116 1 58 1.92e-18 79.7
Msa0901180 AT5G14750.2 56.897 58 25 0 59 116 1 58 1.92e-18 79.7
Msa0901180 AT5G17800.1 42.857 105 54 3 14 116 93 193 3.66e-18 82.4
Msa0901180 AT5G40430.1 35.714 140 77 4 9 138 49 185 5.18e-18 81.3
Msa0901180 AT4G32730.5 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
Msa0901180 AT4G32730.4 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
Msa0901180 AT4G32730.3 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
Msa0901180 AT4G32730.2 38.938 113 59 4 14 120 87 195 5.96e-18 83.2
Msa0901180 AT4G32730.1 38.938 113 59 4 14 120 87 195 6.77e-18 83.2
Msa0901180 AT5G11050.1 35.238 105 66 2 12 116 103 205 1.01e-17 82.0
Msa0901180 AT4G00540.2 39.450 109 59 2 12 116 101 206 1.78e-17 81.3
Msa0901180 AT2G02820.3 39.286 112 66 2 17 128 33 142 1.91e-17 80.5
Msa0901180 AT2G02820.2 39.286 112 66 2 17 128 33 142 1.97e-17 81.6
Msa0901180 AT2G02820.1 39.286 112 66 2 17 128 33 142 2.68e-17 80.9
Msa0901180 AT4G00540.1 39.450 109 59 2 12 116 99 204 2.96e-17 80.9
Msa0901180 AT2G37630.1 39.000 100 60 1 13 111 3 102 7.25e-17 79.3
Msa0901180 AT3G29020.1 34.127 126 81 2 14 139 65 188 1.22e-16 77.0
Msa0901180 AT1G14350.2 38.739 111 66 2 17 127 28 136 1.26e-16 79.0
Msa0901180 AT1G14350.1 38.739 111 66 2 17 127 28 136 1.26e-16 79.0
Msa0901180 AT3G29020.2 34.127 126 81 2 14 139 67 190 1.34e-16 77.8
Msa0901180 AT5G39700.1 36.000 125 75 4 9 133 51 170 5.52e-12 63.2
Msa0901180 AT4G25560.2 47.273 55 29 0 71 125 2 56 6.47e-11 60.8

Find 32 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGATGGTTGAACTATTTA+AGG 0.151954 6_1:-97451776 Msa0901180:CDS
TATTCCTTTACCAATTAAAA+TGG 0.194308 6_1:-97450951 Msa0901180:CDS
GGTAAAGGAATATTATTAAT+TGG 0.215694 6_1:+97450962 None:intergenic
AAACACTACATTCAAGAAAA+TGG 0.276016 6_1:-97452273 Msa0901180:CDS
TGGTAATTGTGCTGCTATAA+AGG 0.287462 6_1:+97451219 None:intergenic
AAAATGGCAATGCTGGTAAT+TGG 0.287812 6_1:-97452257 Msa0901180:CDS
ACGTCATTATCTGTTCTTCC+TGG 0.361137 6_1:+97451199 None:intergenic
AAACCTCCAAGCTTGATATT+AGG 0.446383 6_1:+97451753 None:intergenic
ATTCAAGAAAATGGCAATGC+TGG 0.460522 6_1:-97452264 Msa0901180:CDS
GAGTCAAAACAAGGTGTGTT+CGG 0.461549 6_1:+97451013 None:intergenic
GATAATGTTGTCTTCCTCCT+TGG 0.483423 6_1:+97451728 None:intergenic
TTAAGGCCTAATATCAAGCT+TGG 0.490508 6_1:-97451759 Msa0901180:CDS
AAGGACTTGCCTGCTTCCTA+TGG 0.502945 6_1:+97451689 None:intergenic
CAAGAAGAATTGCATCATCA+TGG 0.503609 6_1:+97450792 None:intergenic
CTTGAAATTTCCTTGGTGGT+TGG 0.519356 6_1:+97450875 None:intergenic
ACAAAGGGTGCTTCAAGTTG+AGG 0.523660 6_1:+97451049 None:intergenic
AAAACTTGAAATTTCCTTGG+TGG 0.524064 6_1:+97450871 None:intergenic
GACAAATCAAAAGTGAAAAG+AGG 0.524219 6_1:-97452327 Msa0901180:CDS
AAGTCAAAGTACTTGAAAAG+TGG 0.535857 6_1:+97451077 None:intergenic
ATCTCTCTTCCCCTAAAAGC+AGG 0.549254 6_1:-97452234 Msa0901180:intron
TTTATAGCAGCACAATTACC+AGG 0.551768 6_1:-97451217 Msa0901180:CDS
AGGCCTAATATCAAGCTTGG+AGG 0.552249 6_1:-97451756 Msa0901180:CDS
GGAAGAGTTGTCGTCTAAGA+TGG 0.562423 6_1:-97451791 Msa0901180:CDS
AATAATTAAGGTCATGGGAA+GGG 0.568392 6_1:-97452361 None:intergenic
AGTGTAAATATTGTTGTCTG+TGG 0.589563 6_1:+97451123 None:intergenic
AAATAATTAAGGTCATGGGA+AGG 0.599808 6_1:-97452362 None:intergenic
CAAAAGTGAAAAGAGGTCCA+TGG 0.611543 6_1:-97452320 Msa0901180:CDS
TCATCTTCTTCATTAGACCA+TGG 0.627345 6_1:+97452303 None:intergenic
GCTTGGAGGTTTCACCAAGG+AGG 0.668256 6_1:-97451742 Msa0901180:CDS
AATTTGTAGGAGTCAAAACA+AGG 0.676985 6_1:+97451004 None:intergenic
TAGTACTACACCAACCACCA+AGG 0.700097 6_1:-97450885 Msa0901180:CDS
CAAGCTTGGAGGTTTCACCA+AGG 0.746208 6_1:-97451745 Msa0901180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATGTTTAATTTG+TGG - chr6_1:97451270-97451289 Msa0901180:intron 10.0%
!!! TTTTTATTATGTTTAATTTG+TGG - chr6_1:97451270-97451289 Msa0901180:intron 10.0%
!! ATGAAAGATATATAAATCAA+GGG + chr6_1:97450924-97450943 None:intergenic 15.0%
!! AATGAAAGATATATAAATCA+AGG + chr6_1:97450925-97450944 None:intergenic 15.0%
!!! ATGTTTTTTTTTTCTTTCAA+TGG - chr6_1:97451105-97451124 Msa0901180:CDS 15.0%
!!! CATAATATTGATTTCAAATA+AGG + chr6_1:97451235-97451254 None:intergenic 15.0%
!!! TAATTTGTGGTATTTTTTTT+AGG - chr6_1:97451283-97451302 Msa0901180:intron 15.0%
!!! ATATTTATTTTTTTGTCATC+AGG - chr6_1:97451865-97451884 Msa0901180:intron 15.0%
!! ATGAAAGATATATAAATCAA+GGG + chr6_1:97450924-97450943 None:intergenic 15.0%
!! AATGAAAGATATATAAATCA+AGG + chr6_1:97450925-97450944 None:intergenic 15.0%
!!! ATGTTTTTTTTTTCTTTCAA+TGG - chr6_1:97451105-97451124 Msa0901180:CDS 15.0%
!!! CATAATATTGATTTCAAATA+AGG + chr6_1:97451235-97451254 None:intergenic 15.0%
!!! TAATTTGTGGTATTTTTTTT+AGG - chr6_1:97451283-97451302 Msa0901180:intron 15.0%
!!! ATATTTATTTTTTTGTCATC+AGG - chr6_1:97451865-97451884 Msa0901180:intron 15.0%
!! TGAAAGATATATAAATCAAG+GGG + chr6_1:97450923-97450942 None:intergenic 20.0%
!!! ATCAAATCTAAAATCTAAGA+TGG - chr6_1:97451012-97451031 Msa0901180:CDS 20.0%
!! GAAACTTTCTATAAGAATTA+GGG + chr6_1:97451069-97451088 None:intergenic 20.0%
!! TGAAACTTTCTATAAGAATT+AGG + chr6_1:97451070-97451089 None:intergenic 20.0%
!! CTTATAGAAAGTTTCATTTA+AGG - chr6_1:97451074-97451093 Msa0901180:CDS 20.0%
!! AAAGAAACTATAGAAATGAA+AGG + chr6_1:97451444-97451463 None:intergenic 20.0%
!! CAAAATCATACAATATAATG+AGG - chr6_1:97451495-97451514 Msa0901180:intron 20.0%
!! CATACTTAACACAATAAATA+AGG + chr6_1:97451616-97451635 None:intergenic 20.0%
!!! TTATGTCTTTGACTAATTTT+AGG + chr6_1:97451768-97451787 None:intergenic 20.0%
!! GGTAAAGGAATATTATTAAT+TGG + chr6_1:97452152-97452171 None:intergenic 20.0%
!! TATTCCTTTACCAATTAAAA+TGG - chr6_1:97452160-97452179 Msa0901180:intron 20.0%
!! TGAAAGATATATAAATCAAG+GGG + chr6_1:97450923-97450942 None:intergenic 20.0%
!!! ATCAAATCTAAAATCTAAGA+TGG - chr6_1:97451012-97451031 Msa0901180:CDS 20.0%
!! GAAACTTTCTATAAGAATTA+GGG + chr6_1:97451069-97451088 None:intergenic 20.0%
!! TGAAACTTTCTATAAGAATT+AGG + chr6_1:97451070-97451089 None:intergenic 20.0%
!! CTTATAGAAAGTTTCATTTA+AGG - chr6_1:97451074-97451093 Msa0901180:CDS 20.0%
!! AAAGAAACTATAGAAATGAA+AGG + chr6_1:97451444-97451463 None:intergenic 20.0%
!! CAAAATCATACAATATAATG+AGG - chr6_1:97451495-97451514 Msa0901180:intron 20.0%
!! CATACTTAACACAATAAATA+AGG + chr6_1:97451616-97451635 None:intergenic 20.0%
!!! TTATGTCTTTGACTAATTTT+AGG + chr6_1:97451768-97451787 None:intergenic 20.0%
!! GGTAAAGGAATATTATTAAT+TGG + chr6_1:97452152-97452171 None:intergenic 20.0%
!! TATTCCTTTACCAATTAAAA+TGG - chr6_1:97452160-97452179 Msa0901180:intron 20.0%
! AAACACTACATTCAAGAAAA+TGG - chr6_1:97450838-97450857 Msa0901180:CDS 25.0%
!! CTAAAATCTAAGATGGTATA+TGG - chr6_1:97451019-97451038 Msa0901180:CDS 25.0%
! ATAGAAAGTTTCATTTAAGG+AGG - chr6_1:97451077-97451096 Msa0901180:CDS 25.0%
! TAAGATGGTTGAACTATTTA+AGG - chr6_1:97451335-97451354 Msa0901180:intron 25.0%
! AAAATGTGTATGCATACATA+TGG + chr6_1:97451470-97451489 None:intergenic 25.0%
! ACAATTGTGATTAGATACTA+CGG + chr6_1:97451704-97451723 None:intergenic 25.0%
!! GTTTTTCTATTATTCAAGCT+TGG + chr6_1:97451738-97451757 None:intergenic 25.0%
!!! TTTATTTTTTTGTCATCAGG+TGG - chr6_1:97451868-97451887 Msa0901180:intron 25.0%
!!! TTTTGACTCCTACAAATTTT+TGG - chr6_1:97452112-97452131 Msa0901180:intron 25.0%
! TTGCAAATCCAAAAATTTGT+AGG + chr6_1:97452123-97452142 None:intergenic 25.0%
!!! GATTCCATTTTAATTGGTAA+AGG + chr6_1:97452167-97452186 None:intergenic 25.0%
! TGAAAAACTTGAAATTTCCT+TGG + chr6_1:97452246-97452265 None:intergenic 25.0%
! AAACACTACATTCAAGAAAA+TGG - chr6_1:97450838-97450857 Msa0901180:CDS 25.0%
!! CTAAAATCTAAGATGGTATA+TGG - chr6_1:97451019-97451038 Msa0901180:CDS 25.0%
! ATAGAAAGTTTCATTTAAGG+AGG - chr6_1:97451077-97451096 Msa0901180:CDS 25.0%
! TAAGATGGTTGAACTATTTA+AGG - chr6_1:97451335-97451354 Msa0901180:intron 25.0%
! AAAATGTGTATGCATACATA+TGG + chr6_1:97451470-97451489 None:intergenic 25.0%
! ACAATTGTGATTAGATACTA+CGG + chr6_1:97451704-97451723 None:intergenic 25.0%
!! GTTTTTCTATTATTCAAGCT+TGG + chr6_1:97451738-97451757 None:intergenic 25.0%
!!! TTTATTTTTTTGTCATCAGG+TGG - chr6_1:97451868-97451887 Msa0901180:intron 25.0%
!!! TTTTGACTCCTACAAATTTT+TGG - chr6_1:97452112-97452131 Msa0901180:intron 25.0%
! TTGCAAATCCAAAAATTTGT+AGG + chr6_1:97452123-97452142 None:intergenic 25.0%
!!! GATTCCATTTTAATTGGTAA+AGG + chr6_1:97452167-97452186 None:intergenic 25.0%
! TGAAAAACTTGAAATTTCCT+TGG + chr6_1:97452246-97452265 None:intergenic 25.0%
!!! ACTTTTGATTTGTCACAACA+TGG + chr6_1:97450778-97450797 None:intergenic 30.0%
GACAAATCAAAAGTGAAAAG+AGG - chr6_1:97450784-97450803 Msa0901180:CDS 30.0%
!! TGAAAAATCACCTGCTTTTA+GGG + chr6_1:97450890-97450909 None:intergenic 30.0%
!! ATGAAAAATCACCTGCTTTT+AGG + chr6_1:97450891-97450910 None:intergenic 30.0%
!!! TTTTTAGGTCTAAATCGTTG+TGG - chr6_1:97451298-97451317 Msa0901180:intron 30.0%
!! TTTTAGGTCTAAATCGTTGT+GGG - chr6_1:97451299-97451318 Msa0901180:intron 30.0%
! CAGATCACTCATAGTTTTTA+AGG - chr6_1:97451660-97451679 Msa0901180:intron 30.0%
TAAACAAAATTAGCCGAACT+CGG - chr6_1:97451785-97451804 Msa0901180:CDS 30.0%
ATAATGACGTGAAAAATCAC+TGG - chr6_1:97451925-97451944 Msa0901180:intron 30.0%
! CTAAAGAAAAAGTATGTAGC+AGG - chr6_1:97451957-97451976 Msa0901180:intron 30.0%
AGTGTAAATATTGTTGTCTG+TGG + chr6_1:97451991-97452010 None:intergenic 30.0%
! AAGTCAAAGTACTTGAAAAG+TGG + chr6_1:97452037-97452056 None:intergenic 30.0%
! GGTTTTTGATCAAAGACAAA+GGG + chr6_1:97452080-97452099 None:intergenic 30.0%
AATTTGTAGGAGTCAAAACA+AGG + chr6_1:97452110-97452129 None:intergenic 30.0%
!! GCTTCTGATTCCATTTTAAT+TGG + chr6_1:97452173-97452192 None:intergenic 30.0%
AAAACTTGAAATTTCCTTGG+TGG + chr6_1:97452243-97452262 None:intergenic 30.0%
!!! ACTTTTGATTTGTCACAACA+TGG + chr6_1:97450778-97450797 None:intergenic 30.0%
GACAAATCAAAAGTGAAAAG+AGG - chr6_1:97450784-97450803 Msa0901180:CDS 30.0%
!! TGAAAAATCACCTGCTTTTA+GGG + chr6_1:97450890-97450909 None:intergenic 30.0%
!! ATGAAAAATCACCTGCTTTT+AGG + chr6_1:97450891-97450910 None:intergenic 30.0%
!!! TTTTTAGGTCTAAATCGTTG+TGG - chr6_1:97451298-97451317 Msa0901180:intron 30.0%
!! TTTTAGGTCTAAATCGTTGT+GGG - chr6_1:97451299-97451318 Msa0901180:intron 30.0%
! CAGATCACTCATAGTTTTTA+AGG - chr6_1:97451660-97451679 Msa0901180:intron 30.0%
TAAACAAAATTAGCCGAACT+CGG - chr6_1:97451785-97451804 Msa0901180:CDS 30.0%
ATAATGACGTGAAAAATCAC+TGG - chr6_1:97451925-97451944 Msa0901180:intron 30.0%
! CTAAAGAAAAAGTATGTAGC+AGG - chr6_1:97451957-97451976 Msa0901180:intron 30.0%
AGTGTAAATATTGTTGTCTG+TGG + chr6_1:97451991-97452010 None:intergenic 30.0%
! AAGTCAAAGTACTTGAAAAG+TGG + chr6_1:97452037-97452056 None:intergenic 30.0%
! GGTTTTTGATCAAAGACAAA+GGG + chr6_1:97452080-97452099 None:intergenic 30.0%
AATTTGTAGGAGTCAAAACA+AGG + chr6_1:97452110-97452129 None:intergenic 30.0%
!! GCTTCTGATTCCATTTTAAT+TGG + chr6_1:97452173-97452192 None:intergenic 30.0%
AAAACTTGAAATTTCCTTGG+TGG + chr6_1:97452243-97452262 None:intergenic 30.0%
TCATCTTCTTCATTAGACCA+TGG + chr6_1:97450811-97450830 None:intergenic 35.0%
ATTCAAGAAAATGGCAATGC+TGG - chr6_1:97450847-97450866 Msa0901180:CDS 35.0%
AAAATGGCAATGCTGGTAAT+TGG - chr6_1:97450854-97450873 Msa0901180:CDS 35.0%
!! GAAAAATCACCTGCTTTTAG+GGG + chr6_1:97450889-97450908 None:intergenic 35.0%
TTAAGGCCTAATATCAAGCT+TGG - chr6_1:97451352-97451371 Msa0901180:intron 35.0%
AAACCTCCAAGCTTGATATT+AGG + chr6_1:97451361-97451380 None:intergenic 35.0%
! TGGTAATTGTGCTGCTATAA+AGG + chr6_1:97451895-97451914 None:intergenic 35.0%
TTTATAGCAGCACAATTACC+AGG - chr6_1:97451894-97451913 Msa0901180:intron 35.0%
! CGGTTTTTGATCAAAGACAA+AGG + chr6_1:97452081-97452100 None:intergenic 35.0%
! GAATCAGAAGCTTTTTACAC+TGG - chr6_1:97452182-97452201 Msa0901180:intron 35.0%
CAAGAAGAATTGCATCATCA+TGG + chr6_1:97452322-97452341 None:intergenic 35.0%
TCATCTTCTTCATTAGACCA+TGG + chr6_1:97450811-97450830 None:intergenic 35.0%
ATTCAAGAAAATGGCAATGC+TGG - chr6_1:97450847-97450866 Msa0901180:CDS 35.0%
AAAATGGCAATGCTGGTAAT+TGG - chr6_1:97450854-97450873 Msa0901180:CDS 35.0%
!! GAAAAATCACCTGCTTTTAG+GGG + chr6_1:97450889-97450908 None:intergenic 35.0%
TTAAGGCCTAATATCAAGCT+TGG - chr6_1:97451352-97451371 Msa0901180:intron 35.0%
AAACCTCCAAGCTTGATATT+AGG + chr6_1:97451361-97451380 None:intergenic 35.0%
! TGGTAATTGTGCTGCTATAA+AGG + chr6_1:97451895-97451914 None:intergenic 35.0%
TTTATAGCAGCACAATTACC+AGG - chr6_1:97451894-97451913 Msa0901180:intron 35.0%
! CGGTTTTTGATCAAAGACAA+AGG + chr6_1:97452081-97452100 None:intergenic 35.0%
! GAATCAGAAGCTTTTTACAC+TGG - chr6_1:97452182-97452201 Msa0901180:intron 35.0%
CAAGAAGAATTGCATCATCA+TGG + chr6_1:97452322-97452341 None:intergenic 35.0%
CAAAAGTGAAAAGAGGTCCA+TGG - chr6_1:97450791-97450810 Msa0901180:CDS 40.0%
GATAATGTTGTCTTCCTCCT+TGG + chr6_1:97451386-97451405 None:intergenic 40.0%
!! TGCACTCTTTTTAGCACCAT+AGG - chr6_1:97451406-97451425 Msa0901180:intron 40.0%
!! TTTTTAGCACCATAGGAAGC+AGG - chr6_1:97451413-97451432 Msa0901180:intron 40.0%
ACGTCATTATCTGTTCTTCC+TGG + chr6_1:97451915-97451934 None:intergenic 40.0%
GAGTCAAAACAAGGTGTGTT+CGG + chr6_1:97452101-97452120 None:intergenic 40.0%
! CTTGAAATTTCCTTGGTGGT+TGG + chr6_1:97452239-97452258 None:intergenic 40.0%
CAAAAGTGAAAAGAGGTCCA+TGG - chr6_1:97450791-97450810 Msa0901180:CDS 40.0%
GATAATGTTGTCTTCCTCCT+TGG + chr6_1:97451386-97451405 None:intergenic 40.0%
!! TGCACTCTTTTTAGCACCAT+AGG - chr6_1:97451406-97451425 Msa0901180:intron 40.0%
!! TTTTTAGCACCATAGGAAGC+AGG - chr6_1:97451413-97451432 Msa0901180:intron 40.0%
ACGTCATTATCTGTTCTTCC+TGG + chr6_1:97451915-97451934 None:intergenic 40.0%
GAGTCAAAACAAGGTGTGTT+CGG + chr6_1:97452101-97452120 None:intergenic 40.0%
! CTTGAAATTTCCTTGGTGGT+TGG + chr6_1:97452239-97452258 None:intergenic 40.0%
ATCTCTCTTCCCCTAAAAGC+AGG - chr6_1:97450877-97450896 Msa0901180:CDS 45.0%
GGAAGAGTTGTCGTCTAAGA+TGG - chr6_1:97451320-97451339 Msa0901180:intron 45.0%
AGGCCTAATATCAAGCTTGG+AGG - chr6_1:97451355-97451374 Msa0901180:intron 45.0%
!! CAAGATTTGAGCACCGAGTT+CGG + chr6_1:97451801-97451820 None:intergenic 45.0%
!! ACAAAGGGTGCTTCAAGTTG+AGG + chr6_1:97452065-97452084 None:intergenic 45.0%
TAGTACTACACCAACCACCA+AGG - chr6_1:97452226-97452245 Msa0901180:intron 45.0%
ATCTCTCTTCCCCTAAAAGC+AGG - chr6_1:97450877-97450896 Msa0901180:CDS 45.0%
GGAAGAGTTGTCGTCTAAGA+TGG - chr6_1:97451320-97451339 Msa0901180:intron 45.0%
AGGCCTAATATCAAGCTTGG+AGG - chr6_1:97451355-97451374 Msa0901180:intron 45.0%
!! CAAGATTTGAGCACCGAGTT+CGG + chr6_1:97451801-97451820 None:intergenic 45.0%
!! ACAAAGGGTGCTTCAAGTTG+AGG + chr6_1:97452065-97452084 None:intergenic 45.0%
TAGTACTACACCAACCACCA+AGG - chr6_1:97452226-97452245 Msa0901180:intron 45.0%
CAAGCTTGGAGGTTTCACCA+AGG - chr6_1:97451366-97451385 Msa0901180:intron 50.0%
AAGGACTTGCCTGCTTCCTA+TGG + chr6_1:97451425-97451444 None:intergenic 50.0%
CAAGCTTGGAGGTTTCACCA+AGG - chr6_1:97451366-97451385 Msa0901180:intron 50.0%
AAGGACTTGCCTGCTTCCTA+TGG + chr6_1:97451425-97451444 None:intergenic 50.0%
GCTTGGAGGTTTCACCAAGG+AGG - chr6_1:97451369-97451388 Msa0901180:intron 55.0%
GCTTGGAGGTTTCACCAAGG+AGG - chr6_1:97451369-97451388 Msa0901180:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 97450763 97452370 97450763 ID=Msa0901180;Name=Msa0901180
chr6_1 mRNA 97450763 97452370 97450763 ID=Msa0901180-mRNA-1;Parent=Msa0901180;Name=Msa0901180-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|249
chr6_1 exon 97452235 97452370 97452235 ID=Msa0901180-mRNA-1:exon:17132;Parent=Msa0901180-mRNA-1
chr6_1 exon 97451699 97451828 97451699 ID=Msa0901180-mRNA-1:exon:17131;Parent=Msa0901180-mRNA-1
chr6_1 exon 97450763 97451246 97450763 ID=Msa0901180-mRNA-1:exon:17130;Parent=Msa0901180-mRNA-1
chr6_1 CDS 97452235 97452370 97452235 ID=Msa0901180-mRNA-1:cds;Parent=Msa0901180-mRNA-1
chr6_1 CDS 97451699 97451828 97451699 ID=Msa0901180-mRNA-1:cds;Parent=Msa0901180-mRNA-1
chr6_1 CDS 97450763 97451246 97450763 ID=Msa0901180-mRNA-1:cds;Parent=Msa0901180-mRNA-1
Gene Sequence

>Msa0901180

ATGGGAAGGGCACCATGTTGTGACAAATCAAAAGTGAAAAGAGGTCCATGGTCTAATGAAGAAGATGATATTCTCAAACACTACATTCAAGAAAATGGCAATGCTGGTAATTGGATCTCTCTTCCCCTAAAAGCAGGTCTAAATCGTTGTGGGAAGAGTTGTCGTCTAAGATGGTTGAACTATTTAAGGCCTAATATCAAGCTTGGAGGTTTCACCAAGGAGGAAGACAACATTATCTGCACTCTTTTTAGCACCATAGGAAGCAGGTGGTCCTTTATAGCAGCACAATTACCAGGAAGAACAGATAATGACGTGAAAAATCACTGGAACACTAAACTAAAGAAAAAGTATGTAGCAGGAAACTCTTCCACAGACAACAATATTTACACTTTCAACAATACTACTAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAACTTGAAGCACCCTTTGTCTTTGATCAAAAACCGAACACACCTTGTTTTGACTCCTACAAATTTTTGGATTTGCAAGAAACACCAATTAATAATATTCCTTTACCAATTAAAATGGAATCAGAAGCTTTTTACACTGGAAGTAGCTTGAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTTTTTCAAGTGCAACTTTCTTAGAAGAACAAAACAATGATAATCAATGTTTTGAATATGACCATGATGATGCAATTCTTCTTGAAATGTTTCTTGATGATTTATTGAATTAA
Protein sequence

>Msa0901180

MGRAPCCDKSKVKRGPWSNEEDDILKHYIQENGNAGNWISLPLKAGLNRCGKSCRLRWLNYLRPNIKLGGFTKEEDNIICTLFSTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKYVAGNSSTDNNIYTFNNTTSSDHFSSTLTFQPQLEAPFVFDQKPNTPCFDSYKFLDLQETPINNIPLPIKMESEAFYTGSSLSSSCSTTPTTKEISSFSSATFLEEQNNDNQCFEYDHDDAILLEMFLDDLLN*