Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901530 | XP_003620925.1 | 90.761 | 368 | 33 | 1 | 1 | 367 | 1 | 368 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901530 | sp|F4K933|ET2_ARATH | 40.849 | 377 | 190 | 10 | 1 | 364 | 15 | 371 | 1.05e-79 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901530 | G7KJT8 | 90.761 | 368 | 33 | 1 | 1 | 367 | 1 | 368 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0901530 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901530 | MtrunA17_Chr6g0488451 | 90.761 | 368 | 33 | 1 | 1 | 367 | 1 | 368 | 0.0 | 690 |
| Msa0901530 | MtrunA17_Chr7g0256351 | 72.922 | 373 | 89 | 2 | 2 | 362 | 6 | 378 | 0.0 | 540 |
| Msa0901530 | MtrunA17_Chr6g0488431 | 64.865 | 111 | 34 | 1 | 1 | 111 | 3 | 108 | 1.13e-41 | 142 |
| Msa0901530 | MtrunA17_Chr6g0488421 | 42.500 | 120 | 54 | 2 | 121 | 226 | 22 | 140 | 2.31e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901530 | AT5G56780.1 | 40.849 | 377 | 190 | 10 | 1 | 364 | 15 | 371 | 1.07e-80 | 255 |
| Msa0901530 | AT5G56780.1 | 37.615 | 109 | 64 | 3 | 258 | 366 | 337 | 441 | 5.13e-11 | 64.3 |
| Msa0901530 | AT5G56770.1 | 34.728 | 239 | 114 | 7 | 1 | 238 | 54 | 251 | 2.46e-30 | 117 |
| Msa0901530 | AT4G26170.1 | 34.463 | 177 | 95 | 4 | 191 | 363 | 234 | 393 | 1.86e-19 | 90.1 |
| Msa0901530 | AT4G26170.1 | 31.333 | 150 | 61 | 2 | 253 | 360 | 355 | 504 | 3.38e-12 | 68.2 |
Find 73 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAACCTGCCACAAAATT+TGG | 0.088070 | 6_1:-98271529 | Msa0901530:CDS |
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6_1:+98269240 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6_1:-98269378 | Msa0901530:CDS |
| GGCAACATGCTTGATTTAAT+TGG | 0.190041 | 6_1:+98269530 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.241801 | 6_1:-98271269 | Msa0901530:CDS |
| CGAGTAGTTGTGGTTTATTT+AGG | 0.242234 | 6_1:-98271423 | Msa0901530:CDS |
| AATTGGTTTCAGATTCTTAT+TGG | 0.254920 | 6_1:-98271609 | Msa0901530:intron |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6_1:+98269053 | None:intergenic |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6_1:+98269169 | None:intergenic |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6_1:-98269125 | Msa0901530:CDS |
| TGTACAACCTTCCTTTCCTT+TGG | 0.299617 | 6_1:+98271563 | None:intergenic |
| CATAACCTGCCACAAAATTT+GGG | 0.300743 | 6_1:-98271528 | Msa0901530:CDS |
| TTTCATGAAATCTTTCTTCA+TGG | 0.301982 | 6_1:-98271291 | Msa0901530:CDS |
| TGGTAGAAATGGAGCTCATT+TGG | 0.338587 | 6_1:-98271364 | Msa0901530:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6_1:+98269425 | None:intergenic |
| AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6_1:+98269571 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 6_1:-98271596 | Msa0901530:CDS |
| CTCCAATGTAATGGTAGAAA+TGG | 0.354230 | 6_1:-98271375 | Msa0901530:CDS |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_1:+98269509 | None:intergenic |
| AGCTCTGTCGACTAGCGGTT+TGG | 0.358465 | 6_1:-98271481 | Msa0901530:CDS |
| GAAACAATGAACGTCCCTTT+TGG | 0.367640 | 6_1:+98271310 | None:intergenic |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6_1:-98269098 | Msa0901530:CDS |
| ATGATTCTAGCTTCTCTCAT+TGG | 0.373036 | 6_1:-98272204 | Msa0901530:CDS |
| TAATAACGGTCCATGGCGTC+CGG | 0.380958 | 6_1:-98269654 | Msa0901530:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6_1:-98271325 | Msa0901530:CDS |
| AGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6_1:+98269459 | None:intergenic |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6_1:+98269209 | None:intergenic |
| GTAGCCCATCTATAAACAAT+TGG | 0.410973 | 6_1:+98271264 | None:intergenic |
| GGTAGAAATGGAGCTCATTT+GGG | 0.418721 | 6_1:-98271363 | Msa0901530:CDS |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 6_1:-98271595 | Msa0901530:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6_1:+98269721 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6_1:+98269490 | None:intergenic |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6_1:-98269097 | Msa0901530:CDS |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6_1:-98269389 | Msa0901530:CDS |
| AATGGAGCTCATTTGGGTAA+TGG | 0.455845 | 6_1:-98271357 | Msa0901530:CDS |
| CTCCATTTCTACCATTACAT+TGG | 0.468016 | 6_1:+98271373 | None:intergenic |
| GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6_1:-98269314 | Msa0901530:CDS |
| TGAGTACATTTGATTATGCT+TGG | 0.472258 | 6_1:-98269685 | Msa0901530:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.479986 | 6_1:-98271268 | Msa0901530:CDS |
| GCTTGGAACACAATTAATAA+CGG | 0.491690 | 6_1:-98269668 | Msa0901530:CDS |
| CAGTTGAGATTCTGTTTGCA+AGG | 0.499330 | 6_1:+98269709 | None:intergenic |
| ATACTCAACAAAATTTCATC+AGG | 0.499424 | 6_1:-98269617 | Msa0901530:CDS |
| TAGCCCATCTATAAACAATT+GGG | 0.502193 | 6_1:+98271265 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6_1:-98269556 | Msa0901530:CDS |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6_1:-98271324 | Msa0901530:CDS |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6_1:-98269557 | Msa0901530:CDS |
| CGACTTGCATCGAGTAGTTG+TGG | 0.511029 | 6_1:-98271433 | Msa0901530:CDS |
| AATAACGGTCCATGGCGTCC+GGG | 0.515631 | 6_1:-98269653 | Msa0901530:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6_1:+98269130 | None:intergenic |
| CTGCCACAAAATTTGGGGCC+GGG | 0.522463 | 6_1:-98271522 | Msa0901530:CDS |
| GTCACCAAAACTATTATATG+TGG | 0.524845 | 6_1:-98269173 | Msa0901530:CDS |
| CCTGCCACAAAATTTGGGGC+CGG | 0.531387 | 6_1:-98271523 | Msa0901530:CDS |
| AGAACAAGACTCCAATGTAA+TGG | 0.557797 | 6_1:-98271384 | Msa0901530:CDS |
| GACTACTCCAAAGGAAAGGA+AGG | 0.558934 | 6_1:-98271570 | Msa0901530:CDS |
| GGGCCGGGAGTCTATGAGCT+CGG | 0.562719 | 6_1:-98271507 | Msa0901530:CDS |
| AGAATATCACCCGGACGCCA+TGG | 0.563127 | 6_1:+98269644 | None:intergenic |
| TTCTAGCTTCTCTCATTGGA+AGG | 0.570435 | 6_1:-98272200 | Msa0901530:intron |
| GAGTAGTCTTCCCAATCAGA+AGG | 0.582452 | 6_1:+98271585 | None:intergenic |
| ACACAATTAATAACGGTCCA+TGG | 0.590267 | 6_1:-98269661 | Msa0901530:CDS |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6_1:-98269737 | Msa0901530:intron |
| GGAAGACTACTCCAAAGGAA+AGG | 0.612749 | 6_1:-98271574 | Msa0901530:CDS |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6_1:-98269219 | Msa0901530:CDS |
| TGTTGAACAGATGCAGACCA+AGG | 0.619532 | 6_1:-98269738 | Msa0901530:intron |
| ACTCCGAGCTCATAGACTCC+CGG | 0.622890 | 6_1:+98271504 | None:intergenic |
| GATTGGGAAGACTACTCCAA+AGG | 0.629735 | 6_1:-98271579 | Msa0901530:CDS |
| TTCTATTTGTACAAAGACGC+CGG | 0.639553 | 6_1:-98269348 | Msa0901530:CDS |
| GGAGTAGCTCTGTCGACTAG+CGG | 0.648422 | 6_1:-98271486 | Msa0901530:CDS |
| CACAACTACTCGATGCAAGT+CGG | 0.662201 | 6_1:+98271434 | None:intergenic |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6_1:-98269491 | Msa0901530:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6_1:-98269494 | Msa0901530:CDS |
| AGTATTTCAAGAATATCACC+CGG | 0.675652 | 6_1:+98269635 | None:intergenic |
| ATAACCTGCCACAAAATTTG+GGG | 0.677319 | 6_1:-98271527 | Msa0901530:CDS |
| GAACTATCTTAGGACGCGAG+CGG | 0.699803 | 6_1:+98269435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_1:98269145-98269164 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6_1:98269663-98269682 | None:intergenic | 10.0% |
| !!! | CAATATAATTTTTAGTTTTA+GGG | + | chr6_1:98270616-98270635 | None:intergenic | 10.0% |
| !!! | ACAATATAATTTTTAGTTTT+AGG | + | chr6_1:98270617-98270636 | None:intergenic | 10.0% |
| !! | ATTATGGAAAAAATTATATT+TGG | - | chr6_1:98270654-98270673 | Msa0901530:intron | 10.0% |
| !! | GTATTTAAGTATATTATTTA+AGG | + | chr6_1:98270795-98270814 | None:intergenic | 10.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6_1:98269558-98269577 | Msa0901530:CDS | 15.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6_1:98269676-98269695 | Msa0901530:CDS | 15.0% |
| !! | AATTAAGATCTAAGTTATAT+AGG | - | chr6_1:98270286-98270305 | Msa0901530:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6_1:98270465-98270484 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6_1:98270466-98270485 | None:intergenic | 15.0% |
| !!! | TAATTTTTTCCATAATTTCT+TGG | + | chr6_1:98270650-98270669 | None:intergenic | 15.0% |
| !!! | AATATTGTTTTTTAGCATTA+TGG | + | chr6_1:98270817-98270836 | None:intergenic | 15.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6_1:98269249-98269268 | None:intergenic | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6_1:98269444-98269463 | Msa0901530:CDS | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6_1:98269445-98269464 | Msa0901530:CDS | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6_1:98269594-98269613 | None:intergenic | 20.0% |
| !! | TCAATTTAATAAGATCAAGA+TGG | - | chr6_1:98270096-98270115 | Msa0901530:intron | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_1:98270205-98270224 | None:intergenic | 20.0% |
| !!! | AAAAAAAAGTACATTGCTTA+AGG | + | chr6_1:98270846-98270865 | None:intergenic | 20.0% |
| !! | AAACGACAAATAATAGTAAT+TGG | - | chr6_1:98271095-98271114 | Msa0901530:intron | 20.0% |
| !! | AACGACAAATAATAGTAATT+GGG | - | chr6_1:98271096-98271115 | Msa0901530:intron | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_1:98272065-98272084 | None:intergenic | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_1:98272136-98272155 | None:intergenic | 20.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6_1:98269693-98269712 | Msa0901530:CDS | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+TGG | - | chr6_1:98270011-98270030 | Msa0901530:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_1:98270034-98270053 | Msa0901530:intron | 25.0% |
| ! | AGATCTAAGTTATATAGGTT+TGG | - | chr6_1:98270291-98270310 | Msa0901530:intron | 25.0% |
| ! | TTACATAGTAATAGATACCA+TGG | - | chr6_1:98270496-98270515 | Msa0901530:intron | 25.0% |
| ! | AATAAAGGACCAAGAAATTA+TGG | - | chr6_1:98270638-98270657 | Msa0901530:intron | 25.0% |
| ! | GGCATTAACTAATAGTAATT+GGG | - | chr6_1:98271142-98271161 | Msa0901530:intron | 25.0% |
| ! | ATACTCAACAAAATTTCATC+AGG | - | chr6_1:98271685-98271704 | Msa0901530:intron | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_1:98271924-98271943 | Msa0901530:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_1:98272147-98272166 | Msa0901530:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_1:98272204-98272223 | Msa0901530:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_1:98272205-98272224 | Msa0901530:CDS | 25.0% |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6_1:98269601-98269620 | Msa0901530:CDS | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_1:98269977-98269996 | Msa0901530:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_1:98269978-98269997 | Msa0901530:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_1:98270033-98270052 | Msa0901530:intron | 30.0% | |
| TAGCCCATCTATAAACAATT+GGG | + | chr6_1:98270040-98270059 | None:intergenic | 30.0% | |
| CAAAACGAGCATTTACAATA+TGG | + | chr6_1:98270176-98270195 | None:intergenic | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6_1:98270300-98270319 | Msa0901530:intron | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6_1:98270368-98270387 | Msa0901530:intron | 30.0% | |
| GGGCATTAACTAATAGTAAT+TGG | - | chr6_1:98271141-98271160 | Msa0901530:intron | 30.0% | |
| TAATAGTAATTGGGAGTAGT+GGG | - | chr6_1:98271151-98271170 | Msa0901530:intron | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_1:98271617-98271636 | Msa0901530:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6_1:98271634-98271653 | Msa0901530:intron | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6_1:98271670-98271689 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_1:98271796-98271815 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_1:98271880-98271899 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_1:98271911-98271930 | None:intergenic | 30.0% |
| GTCACCAAAACTATTATATG+TGG | - | chr6_1:98272129-98272148 | Msa0901530:intron | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_1:98272192-98272211 | None:intergenic | 30.0% |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6_1:98269098-98269117 | Msa0901530:CDS | 35.0% |
| !!! | TTTCAGCTAAGTCGTTTTTC+TGG | - | chr6_1:98269312-98269331 | Msa0901530:CDS | 35.0% |
| !!! | TTCAGCTAAGTCGTTTTTCT+GGG | - | chr6_1:98269313-98269332 | Msa0901530:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_1:98269706-98269725 | Msa0901530:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_1:98269707-98269726 | Msa0901530:CDS | 35.0% | |
| CATAACCTGCCACAAAATTT+GGG | - | chr6_1:98269774-98269793 | Msa0901530:intron | 35.0% | |
| ATAACCTGCCACAAAATTTG+GGG | - | chr6_1:98269775-98269794 | Msa0901530:intron | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6_1:98269879-98269898 | Msa0901530:intron | 35.0% | |
| AGAACAAGACTCCAATGTAA+TGG | - | chr6_1:98269918-98269937 | Msa0901530:intron | 35.0% | |
| CTCCAATGTAATGGTAGAAA+TGG | - | chr6_1:98269927-98269946 | Msa0901530:intron | 35.0% | |
| CTCCATTTCTACCATTACAT+TGG | + | chr6_1:98269932-98269951 | None:intergenic | 35.0% | |
| GTAGCCCATCTATAAACAAT+TGG | + | chr6_1:98270041-98270060 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_1:98270148-98270167 | None:intergenic | 35.0% |
| TTACAATATGGTCAAGGCAA+TGG | + | chr6_1:98270164-98270183 | None:intergenic | 35.0% | |
| GAGCATTTACAATATGGTCA+AGG | + | chr6_1:98270170-98270189 | None:intergenic | 35.0% | |
| ATCGATTAACTCACAACAAG+AGG | + | chr6_1:98270360-98270379 | None:intergenic | 35.0% | |
| AATAGTAATTGGGAGTAGAG+AGG | - | chr6_1:98271106-98271125 | Msa0901530:intron | 35.0% | |
| ATAGTAATTGGGAGTAGAGA+GGG | - | chr6_1:98271107-98271126 | Msa0901530:intron | 35.0% | |
| CTAATAGTAATTGGGAGTAG+TGG | - | chr6_1:98271150-98271169 | Msa0901530:intron | 35.0% | |
| TAAGATCCGTATATGCTAAC+GGG | + | chr6_1:98271298-98271317 | None:intergenic | 35.0% | |
| GTAAGATCCGTATATGCTAA+CGG | + | chr6_1:98271299-98271318 | None:intergenic | 35.0% | |
| TCTATCTCTGTTGTCAATAG+CGG | + | chr6_1:98271504-98271523 | None:intergenic | 35.0% | |
| ACACAATTAATAACGGTCCA+TGG | - | chr6_1:98271641-98271660 | Msa0901530:intron | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_1:98271748-98271767 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_1:98271746-98271765 | Msa0901530:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_1:98271775-98271794 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_1:98271913-98271932 | Msa0901530:intron | 35.0% | |
| TTCTATTTGTACAAAGACGC+CGG | - | chr6_1:98271954-98271973 | Msa0901530:intron | 35.0% | |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6_1:98271988-98272007 | Msa0901530:intron | 35.0% |
| ACCAAGTCAGAATCAAAAAG+AGG | - | chr6_1:98272024-98272043 | Msa0901530:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_1:98272028-98272047 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_1:98272037-98272056 | Msa0901530:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_1:98272083-98272102 | Msa0901530:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_1:98272177-98272196 | Msa0901530:intron | 35.0% | |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6_1:98269102-98269121 | Msa0901530:CDS | 40.0% |
| !!! | TCAGCTAAGTCGTTTTTCTG+GGG | - | chr6_1:98269314-98269333 | Msa0901530:CDS | 40.0% |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6_1:98269610-98269629 | Msa0901530:CDS | 40.0% | |
| TGTACAACCTTCCTTTCCTT+TGG | + | chr6_1:98269742-98269761 | None:intergenic | 40.0% | |
| ! | CCAAATTTTGTGGCAGGTTA+TGG | + | chr6_1:98269776-98269795 | None:intergenic | 40.0% |
| CCATAACCTGCCACAAAATT+TGG | - | chr6_1:98269773-98269792 | Msa0901530:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_1:98269938-98269957 | Msa0901530:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_1:98269939-98269958 | Msa0901530:intron | 40.0% | |
| AATGGAGCTCATTTGGGTAA+TGG | - | chr6_1:98269945-98269964 | Msa0901530:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6_1:98269995-98270014 | None:intergenic | 40.0% |
| AGATACCATGGTTGTCAAAG+CGG | - | chr6_1:98270508-98270527 | Msa0901530:intron | 40.0% | |
| AACACGTTTAGTCACGTGAA+TGG | + | chr6_1:98271209-98271228 | None:intergenic | 40.0% | |
| GCATCATCGTTGTAACATAG+TGG | - | chr6_1:98271259-98271278 | Msa0901530:intron | 40.0% | |
| !! | CGTTGTAACATAGTGGATCT+TGG | - | chr6_1:98271266-98271285 | Msa0901530:CDS | 40.0% |
| TCTGTGTAAAATACTGGTGC+TGG | + | chr6_1:98271327-98271346 | None:intergenic | 40.0% | |
| TCGGGTTCTGTGTAAAATAC+TGG | + | chr6_1:98271333-98271352 | None:intergenic | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6_1:98271596-98271615 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_1:98271734-98271753 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_1:98271745-98271764 | Msa0901530:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_1:98271749-98271768 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_1:98271808-98271827 | Msa0901530:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6_1:98271846-98271865 | None:intergenic | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_1:98271901-98271920 | Msa0901530:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_1:98271931-98271950 | Msa0901530:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_1:98271976-98271995 | None:intergenic | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_1:98272175-98272194 | None:intergenic | 40.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6_1:98269496-98269515 | Msa0901530:CDS | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6_1:98269720-98269739 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_1:98269723-98269742 | Msa0901530:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_1:98269728-98269747 | Msa0901530:CDS | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_1:98269732-98269751 | Msa0901530:intron | 45.0% | |
| CACAACTACTCGATGCAAGT+CGG | + | chr6_1:98269871-98269890 | None:intergenic | 45.0% | |
| ATCCGACCCGTTAGCATATA+CGG | - | chr6_1:98271289-98271308 | Msa0901530:CDS | 45.0% | |
| ! | ATCCGTATATGCTAACGGGT+CGG | + | chr6_1:98271294-98271313 | None:intergenic | 45.0% |
| AGGGAAAAGCGGATCAAAAG+CGG | + | chr6_1:98271406-98271425 | None:intergenic | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_1:98271564-98271583 | Msa0901530:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_1:98271565-98271584 | Msa0901530:CDS | 45.0% | |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_1:98272096-98272115 | None:intergenic | 45.0% | |
| !! | AAAAATTATATTGTTAATAA+AGG | - | chr6_1:98270623-98270642 | Msa0901530:intron | 5.0% |
| !! | TAATAATCATAATAATAATA+GGG | + | chr6_1:98270977-98270996 | None:intergenic | 5.0% |
| !! | ATAATAATCATAATAATAAT+AGG | + | chr6_1:98270978-98270997 | None:intergenic | 5.0% |
| !! | ATAATTATTGAAAATAAAAA+AGG | - | chr6_1:98271037-98271056 | Msa0901530:intron | 5.0% |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6_1:98269869-98269888 | Msa0901530:intron | 50.0% | |
| CGTTTCCGCTTTGACAACCA+TGG | + | chr6_1:98270516-98270535 | None:intergenic | 50.0% | |
| TGGTTGTCAAAGCGGAAACG+CGG | - | chr6_1:98270516-98270535 | Msa0901530:intron | 50.0% | |
| AGTAGAGAGGGTTACAGCTG+TGG | - | chr6_1:98271119-98271138 | Msa0901530:intron | 50.0% | |
| GTAGAGAGGGTTACAGCTGT+GGG | - | chr6_1:98271120-98271139 | Msa0901530:intron | 50.0% | |
| TAGAGAGGGTTACAGCTGTG+GGG | - | chr6_1:98271121-98271140 | Msa0901530:intron | 50.0% | |
| !! | GAGTAGTGGGTTACAGCTGT+GGG | - | chr6_1:98271164-98271183 | Msa0901530:intron | 50.0% |
| CGTTTAGTCACGTGAATGGC+TGG | + | chr6_1:98271205-98271224 | None:intergenic | 50.0% | |
| GGGAAAAGCGGATCAAAAGC+GGG | + | chr6_1:98271405-98271424 | None:intergenic | 50.0% | |
| TTGTCAATAGCGGCCAAACG+CGG | + | chr6_1:98271494-98271513 | None:intergenic | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_1:98271584-98271603 | None:intergenic | 50.0% |
| TAATAACGGTCCATGGCGTC+CGG | - | chr6_1:98271648-98271667 | Msa0901530:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_1:98271811-98271830 | Msa0901530:intron | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6_1:98271870-98271889 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_1:98271971-98271990 | Msa0901530:intron | 50.0% | |
| ! | CCTGCCACAAAATTTGGGGC+CGG | - | chr6_1:98269779-98269798 | Msa0901530:intron | 55.0% |
| ! | CTGCCACAAAATTTGGGGCC+GGG | - | chr6_1:98269780-98269799 | Msa0901530:intron | 55.0% |
| ! | ACTCCCGGCCCCAAATTTTG+TGG | + | chr6_1:98269786-98269805 | None:intergenic | 55.0% |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6_1:98269801-98269820 | None:intergenic | 55.0% | |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6_1:98269816-98269835 | Msa0901530:intron | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6_1:98269821-98269840 | Msa0901530:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6_1:98269822-98269841 | Msa0901530:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | chr6_1:98270547-98270566 | Msa0901530:intron | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr6_1:98270556-98270575 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr6_1:98270557-98270576 | None:intergenic | 55.0% |
| !! | GGAGTAGTGGGTTACAGCTG+TGG | - | chr6_1:98271163-98271182 | Msa0901530:intron | 55.0% |
| ! | CGGATCAAAAGCGGGTTTCG+CGG | + | chr6_1:98271397-98271416 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGGAAAAG+CGG | + | chr6_1:98271417-98271436 | None:intergenic | 55.0% | |
| ! | CTTTTCCCTAACGCGCGACT+CGG | - | chr6_1:98271417-98271436 | Msa0901530:CDS | 55.0% |
| !! | CTGACGCGCTAGGCTGTTTT+CGG | - | chr6_1:98271447-98271466 | Msa0901530:CDS | 55.0% |
| AATAACGGTCCATGGCGTCC+GGG | - | chr6_1:98271649-98271668 | Msa0901530:intron | 55.0% | |
| AGAATATCACCCGGACGCCA+TGG | + | chr6_1:98271661-98271680 | None:intergenic | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_1:98271815-98271834 | None:intergenic | 55.0% | |
| ! | CCGGCCCCAAATTTTGTGGC+AGG | + | chr6_1:98269782-98269801 | None:intergenic | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr6_1:98270552-98270571 | None:intergenic | 60.0% |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr6_1:98270555-98270574 | None:intergenic | 60.0% |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr6_1:98270552-98270571 | Msa0901530:intron | 60.0% | |
| AATTGACGCGGCGCGGTATG+CGG | - | chr6_1:98270559-98270578 | Msa0901530:intron | 60.0% | |
| ! | GCGGGGGCTTTTACATGACG+CGG | - | chr6_1:98270589-98270608 | Msa0901530:intron | 60.0% |
| !! | GCTTTTCGGTGTAGCGGAGC+GGG | + | chr6_1:98271372-98271391 | None:intergenic | 60.0% |
| !! | CGCTTTTCGGTGTAGCGGAG+CGG | + | chr6_1:98271373-98271392 | None:intergenic | 60.0% |
| CGCTCCGCTACACCGAAAAG+CGG | - | chr6_1:98271371-98271390 | Msa0901530:CDS | 60.0% | |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6_1:98269795-98269814 | Msa0901530:intron | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | - | chr6_1:98270560-98270579 | Msa0901530:intron | 65.0% | |
| GGTCAAAGGCGGCGCGATTC+GGG | + | chr6_1:98271351-98271370 | None:intergenic | 65.0% | |
| GGGTCAAAGGCGGCGCGATT+CGG | + | chr6_1:98271352-98271371 | None:intergenic | 65.0% | |
| ! | GTAGCGGAGCGGGTCAAAGG+CGG | + | chr6_1:98271362-98271381 | None:intergenic | 65.0% |
| ! | GGTGTAGCGGAGCGGGTCAA+AGG | + | chr6_1:98271365-98271384 | None:intergenic | 65.0% |
| !!! | GCGGCCGCTTTTCGGTGTAG+CGG | + | chr6_1:98271378-98271397 | None:intergenic | 65.0% |
| !!! | CGGGTTTCGCGGCCGCTTTT+CGG | + | chr6_1:98271386-98271405 | None:intergenic | 65.0% |
| CGCGACCGAGTCGCGCGTTA+GGG | + | chr6_1:98271425-98271444 | None:intergenic | 70.0% | |
| AGCGGAAACGCGGCGCGACG+CGG | - | chr6_1:98270526-98270545 | Msa0901530:intron | 75.0% | |
| CGCGGTATGCGGGTGCGACG+CGG | - | chr6_1:98270570-98270589 | Msa0901530:intron | 75.0% | |
| GCGGTATGCGGGTGCGACGC+GGG | - | chr6_1:98270571-98270590 | Msa0901530:intron | 75.0% | |
| CGGTATGCGGGTGCGACGCG+GGG | - | chr6_1:98270572-98270591 | Msa0901530:intron | 75.0% | |
| GGTATGCGGGTGCGACGCGG+GGG | - | chr6_1:98270573-98270592 | Msa0901530:intron | 75.0% | |
| GCGCGACCGAGTCGCGCGTT+AGG | + | chr6_1:98271426-98271445 | None:intergenic | 75.0% | |
| CGGTCGCGCTCTGACGCGCT+AGG | - | chr6_1:98271437-98271456 | Msa0901530:CDS | 75.0% | |
| GGCCAAACGCGGCGCGATCG+CGG | + | chr6_1:98271483-98271502 | None:intergenic | 75.0% | |
| ! | AACGCGGCGCGATCGCGGCG+CGG | + | chr6_1:98271478-98271497 | None:intergenic | 80.0% |
| ! | CGCCGCGATCGCGCCGCGTT+TGG | - | chr6_1:98271478-98271497 | Msa0901530:CDS | 80.0% |
| ! | GGCGCGATCGCGGCGCGGCG+CGG | + | chr6_1:98271473-98271492 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98269064 | 98272260 | 98269064 | ID=Msa0901530;Name=Msa0901530 |
| chr6_1 | mRNA | 98269064 | 98272260 | 98269064 | ID=Msa0901530-mRNA-1;Parent=Msa0901530;Name=Msa0901530-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|3|0|367 |
| chr6_1 | exon | 98272201 | 98272260 | 98272201 | ID=Msa0901530-mRNA-1:exon:17315;Parent=Msa0901530-mRNA-1 |
| chr6_1 | exon | 98271263 | 98271619 | 98271263 | ID=Msa0901530-mRNA-1:exon:17314;Parent=Msa0901530-mRNA-1 |
| chr6_1 | exon | 98269064 | 98269750 | 98269064 | ID=Msa0901530-mRNA-1:exon:17313;Parent=Msa0901530-mRNA-1 |
| chr6_1 | CDS | 98272201 | 98272260 | 98272201 | ID=Msa0901530-mRNA-1:cds;Parent=Msa0901530-mRNA-1 |
| chr6_1 | CDS | 98271263 | 98271619 | 98271263 | ID=Msa0901530-mRNA-1:cds;Parent=Msa0901530-mRNA-1 |
| chr6_1 | CDS | 98269064 | 98269750 | 98269064 | ID=Msa0901530-mRNA-1:cds;Parent=Msa0901530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
