AlfalfaGEDB | Msa0901540

M. sativa cultivar zhongmu-4 / Msa0901540

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901540	XP_003620925.1	92.308	52	4	0	1	52	317	368	7.08e-25	104

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901540	G7KJT8	92.308	52	4	0	1	52	317	368	3.38e-25	104

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TFs/TRs:

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Gene ID	Type	Classification
Msa0901540	TF	HRT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901540	MtrunA17_Chr6g0488451	92.308	52	4	0	1	52	317	368	6.51e-29	104
Msa0901540	MtrunA17_Chr7g0256351	80.952	42	8	0	6	47	337	378	1.70e-18	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901540	AT4G26170.1	54.167	48	21	1	3	50	294	340	2.49e-11	56.6

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Find 7 sgRNAs with CRISPR-Local

Find 9 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTCATGATCATAA+AGG	0.370970	6_1:-98283911	Msa0901540:CDS
AAAGATGTCATGATCATAAA+GGG	0.444185	6_1:-98283910	Msa0901540:CDS
AATTCCACATGTAATAGTTT+TGG	0.293273	6_1:+98283982	None:intergenic
ATCAATTATTTCTAATTAAT+AGG	0.256718	6_1:+98283866	None:intergenic
ATCACCAAAACTATTACATG+TGG	0.607083	6_1:-98283986	Msa0901540:CDS
TATTACATGTGGAATTATTT+TGG	0.157647	6_1:-98283975	Msa0901540:CDS
TGTAGAAAACAACCAGTTAA+AGG	0.282189	6_1:-98283938	Msa0901540:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATCACCAAAACTATTACATG+TGG	-	chr6_1:98283904-98283923	Msa0901540:CDS	30.0%
	TGTAGAAAACAACCAGTTAA+AGG	-	chr6_1:98283952-98283971	Msa0901540:CDS	30.0%
!	AAAAGATGTCATGATCATAA+AGG	-	chr6_1:98283979-98283998	Msa0901540:CDS	25.0%
!	AAAGATGTCATGATCATAAA+GGG	-	chr6_1:98283980-98283999	Msa0901540:CDS	25.0%
!	CATCTTTTTCTTCCTTTAAC+TGG	+	chr6_1:98283967-98283986	None:intergenic	30.0%
!!	AATTCCACATGTAATAGTTT+TGG	+	chr6_1:98283911-98283930	None:intergenic	25.0%
!!	AACTGGTTGTTTTCTACAAG+TGG	+	chr6_1:98283950-98283969	None:intergenic	35.0%
!!!	TATTACATGTGGAATTATTT+TGG	-	chr6_1:98283915-98283934	Msa0901540:CDS	20.0%
!!!	TGTGGAATTATTTTGGAAGA+TGG	-	chr6_1:98283922-98283941	Msa0901540:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	98283877	98284035	98283877	ID=Msa0901540;Name=Msa0901540
chr6_1	mRNA	98283877	98284035	98283877	ID=Msa0901540-mRNA-1;Parent=Msa0901540;Name=Msa0901540-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|52
chr6_1	exon	98283877	98284035	98283877	ID=Msa0901540-mRNA-1:exon:17346;Parent=Msa0901540-mRNA-1
chr6_1	CDS	98283877	98284035	98283877	ID=Msa0901540-mRNA-1:cds;Parent=Msa0901540-mRNA-1

Gene Sequence	>Msa0901540 ATGGCTGAGAGTCTTGTTGATGAGAGTATCACCAAAACTATTACATGTGGAATTATTTTGGAAGATGGATCCACTTGTAGAAAACAACCAGTTAAAGGAAGAAAAAGATGTCATGATCATAAAGGGAAGAGAATTCGTGCATTTGTTCCTATTAATTAG
Protein sequence	>Msa0901540 MAESLVDESITKTITCGIILEDGSTCRKQPVKGRKRCHDHKGKRIRAFVPIN*