Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901560 | XP_003620925.1 | 90.489 | 368 | 34 | 1 | 1 | 367 | 1 | 368 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901560 | sp|F4K933|ET2_ARATH | 40.849 | 377 | 190 | 10 | 1 | 364 | 15 | 371 | 1.63e-79 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901560 | G7KJT8 | 90.489 | 368 | 34 | 1 | 1 | 367 | 1 | 368 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0901560 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901560 | MtrunA17_Chr6g0488451 | 90.489 | 368 | 34 | 1 | 1 | 367 | 1 | 368 | 0.0 | 688 |
| Msa0901560 | MtrunA17_Chr7g0256351 | 72.654 | 373 | 90 | 2 | 2 | 362 | 6 | 378 | 0.0 | 538 |
| Msa0901560 | MtrunA17_Chr6g0488431 | 64.865 | 111 | 34 | 1 | 1 | 111 | 3 | 108 | 1.11e-41 | 142 |
| Msa0901560 | MtrunA17_Chr6g0488421 | 42.500 | 120 | 54 | 2 | 121 | 226 | 22 | 140 | 2.33e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901560 | AT5G56780.1 | 40.849 | 377 | 190 | 10 | 1 | 364 | 15 | 371 | 1.66e-80 | 254 |
| Msa0901560 | AT5G56780.1 | 37.615 | 109 | 64 | 3 | 258 | 366 | 337 | 441 | 5.36e-11 | 64.3 |
| Msa0901560 | AT5G56770.1 | 34.728 | 239 | 114 | 7 | 1 | 238 | 54 | 251 | 2.44e-30 | 117 |
| Msa0901560 | AT4G26170.1 | 34.463 | 177 | 95 | 4 | 191 | 363 | 234 | 393 | 9.02e-20 | 90.9 |
| Msa0901560 | AT4G26170.1 | 31.333 | 150 | 61 | 2 | 253 | 360 | 355 | 504 | 8.77e-12 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAACCTGCCACAAAATT+TGG | 0.088070 | 6_1:-98298348 | Msa0901560:CDS |
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6_1:+98297072 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6_1:-98297210 | Msa0901560:CDS |
| GGCAACATGCTTGATTTAAT+TGG | 0.190041 | 6_1:+98297362 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.241801 | 6_1:-98298088 | Msa0901560:CDS |
| CGAGTAGTTGTGGTTTATTT+AGG | 0.242234 | 6_1:-98298242 | Msa0901560:CDS |
| AATTGGTTTCAGATTCTTAT+TGG | 0.254920 | 6_1:-98298428 | Msa0901560:intron |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6_1:+98296885 | None:intergenic |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6_1:-98296957 | Msa0901560:CDS |
| TGTACAACCTTCCTTTCCTT+TGG | 0.299617 | 6_1:+98298382 | None:intergenic |
| CATAACCTGCCACAAAATTT+GGG | 0.300743 | 6_1:-98298347 | Msa0901560:CDS |
| TTTCATGAAATCTTTCTTCA+TGG | 0.301982 | 6_1:-98298110 | Msa0901560:CDS |
| AATTCCACATATAGTAGTTT+TGG | 0.303116 | 6_1:+98297001 | None:intergenic |
| TGGTAGAAATGGAGCTCATT+TGG | 0.338587 | 6_1:-98298183 | Msa0901560:CDS |
| GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6_1:+98297257 | None:intergenic |
| AGTGAAGGGTAGAAGTGATT+TGG | 0.349328 | 6_1:+98297403 | None:intergenic |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | 6_1:-98298415 | Msa0901560:CDS |
| CTCCAATGTAATGGTAGAAA+TGG | 0.354230 | 6_1:-98298194 | Msa0901560:CDS |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_1:+98297341 | None:intergenic |
| AGCTCTGTCGACTAGCGGTT+TGG | 0.358465 | 6_1:-98298300 | Msa0901560:CDS |
| GAAACAATGAACGTCCCTTT+TGG | 0.367640 | 6_1:+98298129 | None:intergenic |
| AAAAGATGTCATGAACATAA+AGG | 0.370970 | 6_1:-98296930 | Msa0901560:CDS |
| ATGATTCTAGCTTCTCTCAT+TGG | 0.373036 | 6_1:-98299023 | Msa0901560:CDS |
| TAATAACGGTCCATGGCGTC+CGG | 0.380958 | 6_1:-98297486 | Msa0901560:CDS |
| ATTTGAATCTTCTCACCAAA+AGG | 0.382515 | 6_1:-98298144 | Msa0901560:CDS |
| AGAATTTGAACACGCGAGAT+AGG | 0.386624 | 6_1:+98297291 | None:intergenic |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6_1:+98297041 | None:intergenic |
| GTAGCCCATCTATAAACAAT+TGG | 0.410973 | 6_1:+98298083 | None:intergenic |
| GGTAGAAATGGAGCTCATTT+GGG | 0.418721 | 6_1:-98298182 | Msa0901560:CDS |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | 6_1:-98298414 | Msa0901560:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6_1:+98297553 | None:intergenic |
| GCCGCCATTGTCTGCTTCAT+CGG | 0.439254 | 6_1:+98297322 | None:intergenic |
| AAAGATGTCATGAACATAAA+GGG | 0.444185 | 6_1:-98296929 | Msa0901560:CDS |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6_1:-98297221 | Msa0901560:CDS |
| AATGGAGCTCATTTGGGTAA+TGG | 0.455845 | 6_1:-98298176 | Msa0901560:CDS |
| CTCCATTTCTACCATTACAT+TGG | 0.468016 | 6_1:+98298192 | None:intergenic |
| GTTAGGTGTCATGAACATAA+AGG | 0.469142 | 6_1:-98297146 | Msa0901560:CDS |
| TGAGTACATTTGATTATGCT+TGG | 0.472258 | 6_1:-98297517 | Msa0901560:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.479986 | 6_1:-98298087 | Msa0901560:CDS |
| GCTTGGAACACAATTAATAA+CGG | 0.491690 | 6_1:-98297500 | Msa0901560:CDS |
| CAGTTGAGATTCTGTTTGCA+AGG | 0.499330 | 6_1:+98297541 | None:intergenic |
| ATACTCAACAAAATTTCATC+AGG | 0.499424 | 6_1:-98297449 | Msa0901560:CDS |
| TAGCCCATCTATAAACAATT+GGG | 0.502193 | 6_1:+98298084 | None:intergenic |
| CCTTCACTCAAAAGAAAGTA+GGG | 0.503569 | 6_1:-98297388 | Msa0901560:CDS |
| TTTGAATCTTCTCACCAAAA+GGG | 0.504759 | 6_1:-98298143 | Msa0901560:CDS |
| CCCTTCACTCAAAAGAAAGT+AGG | 0.510670 | 6_1:-98297389 | Msa0901560:CDS |
| CGACTTGCATCGAGTAGTTG+TGG | 0.511029 | 6_1:-98298252 | Msa0901560:CDS |
| AATAACGGTCCATGGCGTCC+GGG | 0.515631 | 6_1:-98297485 | Msa0901560:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6_1:+98296962 | None:intergenic |
| CTGCCACAAAATTTGGGGCC+GGG | 0.522463 | 6_1:-98298341 | Msa0901560:CDS |
| GTCACCAAAACTACTATATG+TGG | 0.530648 | 6_1:-98297005 | Msa0901560:CDS |
| CCTGCCACAAAATTTGGGGC+CGG | 0.531387 | 6_1:-98298342 | Msa0901560:CDS |
| AGAACAAGACTCCAATGTAA+TGG | 0.557797 | 6_1:-98298203 | Msa0901560:CDS |
| GACTACTCCAAAGGAAAGGA+AGG | 0.558934 | 6_1:-98298389 | Msa0901560:CDS |
| GGGCCGGGAGTCTATGAGCT+CGG | 0.562719 | 6_1:-98298326 | Msa0901560:CDS |
| AGAATATCACCCGGACGCCA+TGG | 0.563127 | 6_1:+98297476 | None:intergenic |
| TTCTAGCTTCTCTCATTGGA+AGG | 0.570435 | 6_1:-98299019 | Msa0901560:intron |
| GAGTAGTCTTCCCAATCAGA+AGG | 0.582452 | 6_1:+98298404 | None:intergenic |
| ACACAATTAATAACGGTCCA+TGG | 0.590267 | 6_1:-98297493 | Msa0901560:CDS |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6_1:-98297569 | Msa0901560:intron |
| GGAAGACTACTCCAAAGGAA+AGG | 0.612749 | 6_1:-98298393 | Msa0901560:CDS |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6_1:-98297051 | Msa0901560:CDS |
| TGTTGAACAGATGCAGACCA+AGG | 0.619532 | 6_1:-98297570 | Msa0901560:intron |
| ACTCCGAGCTCATAGACTCC+CGG | 0.622890 | 6_1:+98298323 | None:intergenic |
| GATTGGGAAGACTACTCCAA+AGG | 0.629735 | 6_1:-98298398 | Msa0901560:CDS |
| TTCTATTTGTACAAAGACGC+CGG | 0.639553 | 6_1:-98297180 | Msa0901560:CDS |
| GGAGTAGCTCTGTCGACTAG+CGG | 0.648422 | 6_1:-98298305 | Msa0901560:CDS |
| CACAACTACTCGATGCAAGT+CGG | 0.662201 | 6_1:+98298253 | None:intergenic |
| TCCGATGAAGCAGACAATGG+CGG | 0.674520 | 6_1:-98297323 | Msa0901560:CDS |
| AAATCCGATGAAGCAGACAA+TGG | 0.675612 | 6_1:-98297326 | Msa0901560:CDS |
| AGTATTTCAAGAATATCACC+CGG | 0.675652 | 6_1:+98297467 | None:intergenic |
| ATAACCTGCCACAAAATTTG+GGG | 0.677319 | 6_1:-98298346 | Msa0901560:CDS |
| GAACTATCTTAGGACGCGAG+CGG | 0.699803 | 6_1:+98297267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_1:98296977-98296996 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6_1:98297495-98297514 | None:intergenic | 10.0% |
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_1:98296977-98296996 | None:intergenic | 10.0% |
| !! | ATAATCAATATATATGTATT+CGG | + | chr6_1:98297495-98297514 | None:intergenic | 10.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6_1:98297390-98297409 | Msa0901560:CDS | 15.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6_1:98297508-98297527 | Msa0901560:CDS | 15.0% |
| !! | AATTAAGATCTAAGTTATAT+AGG | - | chr6_1:98298118-98298137 | Msa0901560:CDS | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6_1:98298297-98298316 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6_1:98298298-98298317 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAATCTAAAAATA+CGG | - | chr6_1:98297390-98297409 | Msa0901560:CDS | 15.0% |
| !! | TGATTATTCATGTTAATAAT+TGG | - | chr6_1:98297508-98297527 | Msa0901560:CDS | 15.0% |
| !! | AATTAAGATCTAAGTTATAT+AGG | - | chr6_1:98298118-98298137 | Msa0901560:CDS | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6_1:98298297-98298316 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6_1:98298298-98298317 | None:intergenic | 15.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6_1:98297081-98297100 | None:intergenic | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6_1:98297276-98297295 | Msa0901560:CDS | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6_1:98297277-98297296 | Msa0901560:CDS | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6_1:98297426-98297445 | None:intergenic | 20.0% |
| !! | TCAATTTAATAAGATCAAGA+TGG | - | chr6_1:98297928-98297947 | Msa0901560:intron | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_1:98298037-98298056 | None:intergenic | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_1:98298884-98298903 | None:intergenic | 20.0% |
| !! | AATCAAACTGTGTAAATAAT+AGG | + | chr6_1:98297081-98297100 | None:intergenic | 20.0% |
| !! | ACTGAAAAATATCAAACTAA+AGG | - | chr6_1:98297276-98297295 | Msa0901560:CDS | 20.0% |
| !! | CTGAAAAATATCAAACTAAA+GGG | - | chr6_1:98297277-98297296 | Msa0901560:CDS | 20.0% |
| !!! | TGCTCATATTTAAAACTATT+TGG | + | chr6_1:98297426-98297445 | None:intergenic | 20.0% |
| !! | TCAATTTAATAAGATCAAGA+TGG | - | chr6_1:98297928-98297947 | Msa0901560:intron | 20.0% |
| !! | ATAATATGTATCTCAAATCA+TGG | + | chr6_1:98298037-98298056 | None:intergenic | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_1:98298884-98298903 | None:intergenic | 20.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6_1:98297525-98297544 | Msa0901560:CDS | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+TGG | - | chr6_1:98297843-98297862 | Msa0901560:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_1:98297866-98297885 | Msa0901560:intron | 25.0% |
| ! | AGATCTAAGTTATATAGGTT+TGG | - | chr6_1:98298123-98298142 | Msa0901560:CDS | 25.0% |
| ! | ATACTCAACAAAATTTCATC+AGG | - | chr6_1:98298504-98298523 | Msa0901560:intron | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_1:98298743-98298762 | Msa0901560:intron | 25.0% |
| !! | AATTCCACATATAGTAGTTT+TGG | + | chr6_1:98298955-98298974 | None:intergenic | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_1:98298966-98298985 | Msa0901560:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_1:98299023-98299042 | Msa0901560:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_1:98299024-98299043 | Msa0901560:CDS | 25.0% |
| !! | AATTGGTTTCAGATTCTTAT+TGG | - | chr6_1:98297525-98297544 | Msa0901560:CDS | 25.0% |
| ! | TTTCATGAAATCTTTCTTCA+TGG | - | chr6_1:98297843-98297862 | Msa0901560:intron | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_1:98297866-98297885 | Msa0901560:intron | 25.0% |
| ! | AGATCTAAGTTATATAGGTT+TGG | - | chr6_1:98298123-98298142 | Msa0901560:CDS | 25.0% |
| ! | ATACTCAACAAAATTTCATC+AGG | - | chr6_1:98298504-98298523 | Msa0901560:intron | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_1:98298743-98298762 | Msa0901560:intron | 25.0% |
| !! | AATTCCACATATAGTAGTTT+TGG | + | chr6_1:98298955-98298974 | None:intergenic | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_1:98298966-98298985 | Msa0901560:intron | 25.0% |
| ! | AAAAGATGTCATGAACATAA+AGG | - | chr6_1:98299023-98299042 | Msa0901560:CDS | 25.0% |
| ! | AAAGATGTCATGAACATAAA+GGG | - | chr6_1:98299024-98299043 | Msa0901560:CDS | 25.0% |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6_1:98297433-98297452 | Msa0901560:CDS | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_1:98297809-98297828 | Msa0901560:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_1:98297810-98297829 | Msa0901560:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_1:98297865-98297884 | Msa0901560:intron | 30.0% | |
| TAGCCCATCTATAAACAATT+GGG | + | chr6_1:98297872-98297891 | None:intergenic | 30.0% | |
| CAAAACGAGCATTTACAATA+TGG | + | chr6_1:98298008-98298027 | None:intergenic | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6_1:98298132-98298151 | Msa0901560:CDS | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6_1:98298200-98298219 | Msa0901560:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_1:98298436-98298455 | Msa0901560:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6_1:98298453-98298472 | Msa0901560:intron | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6_1:98298489-98298508 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_1:98298615-98298634 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_1:98298699-98298718 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_1:98298730-98298749 | None:intergenic | 30.0% |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_1:98299011-98299030 | None:intergenic | 30.0% |
| TTAAATATGAGCAGTCTGAT+TGG | - | chr6_1:98297433-98297452 | Msa0901560:CDS | 30.0% | |
| ATTTGAATCTTCTCACCAAA+AGG | - | chr6_1:98297809-98297828 | Msa0901560:intron | 30.0% | |
| TTTGAATCTTCTCACCAAAA+GGG | - | chr6_1:98297810-98297829 | Msa0901560:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_1:98297865-98297884 | Msa0901560:intron | 30.0% | |
| TAGCCCATCTATAAACAATT+GGG | + | chr6_1:98297872-98297891 | None:intergenic | 30.0% | |
| CAAAACGAGCATTTACAATA+TGG | + | chr6_1:98298008-98298027 | None:intergenic | 30.0% | |
| TTATATAGGTTTGGAAGTCT+AGG | - | chr6_1:98298132-98298151 | Msa0901560:CDS | 30.0% | |
| GAGTTAATCGATTAAGTCTT+TGG | - | chr6_1:98298200-98298219 | Msa0901560:CDS | 30.0% | |
| TGAGTACATTTGATTATGCT+TGG | - | chr6_1:98298436-98298455 | Msa0901560:intron | 30.0% | |
| GCTTGGAACACAATTAATAA+CGG | - | chr6_1:98298453-98298472 | Msa0901560:intron | 30.0% | |
| AGTATTTCAAGAATATCACC+CGG | + | chr6_1:98298489-98298508 | None:intergenic | 30.0% | |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_1:98298615-98298634 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_1:98298699-98298718 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_1:98298730-98298749 | None:intergenic | 30.0% |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_1:98299011-98299030 | None:intergenic | 30.0% |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6_1:98296930-98296949 | Msa0901560:CDS | 35.0% |
| !!! | TTTCAGCTAAGTCGTTTTTC+TGG | - | chr6_1:98297144-98297163 | Msa0901560:CDS | 35.0% |
| !!! | TTCAGCTAAGTCGTTTTTCT+GGG | - | chr6_1:98297145-98297164 | Msa0901560:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_1:98297538-98297557 | Msa0901560:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_1:98297539-98297558 | Msa0901560:CDS | 35.0% | |
| CATAACCTGCCACAAAATTT+GGG | - | chr6_1:98297606-98297625 | Msa0901560:intron | 35.0% | |
| ATAACCTGCCACAAAATTTG+GGG | - | chr6_1:98297607-98297626 | Msa0901560:intron | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6_1:98297711-98297730 | Msa0901560:intron | 35.0% | |
| AGAACAAGACTCCAATGTAA+TGG | - | chr6_1:98297750-98297769 | Msa0901560:intron | 35.0% | |
| CTCCAATGTAATGGTAGAAA+TGG | - | chr6_1:98297759-98297778 | Msa0901560:intron | 35.0% | |
| CTCCATTTCTACCATTACAT+TGG | + | chr6_1:98297764-98297783 | None:intergenic | 35.0% | |
| GTAGCCCATCTATAAACAAT+TGG | + | chr6_1:98297873-98297892 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_1:98297980-98297999 | None:intergenic | 35.0% |
| ATCGATTAACTCACAACAAG+AGG | + | chr6_1:98298192-98298211 | None:intergenic | 35.0% | |
| ACACAATTAATAACGGTCCA+TGG | - | chr6_1:98298460-98298479 | Msa0901560:intron | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_1:98298567-98298586 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_1:98298565-98298584 | Msa0901560:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_1:98298594-98298613 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_1:98298732-98298751 | Msa0901560:intron | 35.0% | |
| TTCTATTTGTACAAAGACGC+CGG | - | chr6_1:98298773-98298792 | Msa0901560:intron | 35.0% | |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6_1:98298807-98298826 | Msa0901560:intron | 35.0% |
| ACCAAGTCAGAATCAAAAAG+AGG | - | chr6_1:98298843-98298862 | Msa0901560:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_1:98298847-98298866 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_1:98298856-98298875 | Msa0901560:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_1:98298902-98298921 | Msa0901560:intron | 35.0% | |
| GTCACCAAAACTACTATATG+TGG | - | chr6_1:98298948-98298967 | Msa0901560:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_1:98298996-98299015 | Msa0901560:intron | 35.0% | |
| !! | ATGATTCTAGCTTCTCTCAT+TGG | - | chr6_1:98296930-98296949 | Msa0901560:CDS | 35.0% |
| !!! | TTTCAGCTAAGTCGTTTTTC+TGG | - | chr6_1:98297144-98297163 | Msa0901560:CDS | 35.0% |
| !!! | TTCAGCTAAGTCGTTTTTCT+GGG | - | chr6_1:98297145-98297164 | Msa0901560:CDS | 35.0% |
| TTCTTATTGGTCCTTCTGAT+TGG | - | chr6_1:98297538-98297557 | Msa0901560:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | chr6_1:98297539-98297558 | Msa0901560:CDS | 35.0% | |
| CATAACCTGCCACAAAATTT+GGG | - | chr6_1:98297606-98297625 | Msa0901560:intron | 35.0% | |
| ATAACCTGCCACAAAATTTG+GGG | - | chr6_1:98297607-98297626 | Msa0901560:intron | 35.0% | |
| CGAGTAGTTGTGGTTTATTT+AGG | - | chr6_1:98297711-98297730 | Msa0901560:intron | 35.0% | |
| AGAACAAGACTCCAATGTAA+TGG | - | chr6_1:98297750-98297769 | Msa0901560:intron | 35.0% | |
| CTCCAATGTAATGGTAGAAA+TGG | - | chr6_1:98297759-98297778 | Msa0901560:intron | 35.0% | |
| CTCCATTTCTACCATTACAT+TGG | + | chr6_1:98297764-98297783 | None:intergenic | 35.0% | |
| GTAGCCCATCTATAAACAAT+TGG | + | chr6_1:98297873-98297892 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_1:98297980-98297999 | None:intergenic | 35.0% |
| ATCGATTAACTCACAACAAG+AGG | + | chr6_1:98298192-98298211 | None:intergenic | 35.0% | |
| ACACAATTAATAACGGTCCA+TGG | - | chr6_1:98298460-98298479 | Msa0901560:intron | 35.0% | |
| !! | CCTACTTTCTTTTGAGTGAA+GGG | + | chr6_1:98298567-98298586 | None:intergenic | 35.0% |
| CCTTCACTCAAAAGAAAGTA+GGG | - | chr6_1:98298565-98298584 | Msa0901560:intron | 35.0% | |
| GGCAACATGCTTGATTTAAT+TGG | + | chr6_1:98298594-98298613 | None:intergenic | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_1:98298732-98298751 | Msa0901560:intron | 35.0% | |
| TTCTATTTGTACAAAGACGC+CGG | - | chr6_1:98298773-98298792 | Msa0901560:intron | 35.0% | |
| ! | GTTAGGTGTCATGAACATAA+AGG | - | chr6_1:98298807-98298826 | Msa0901560:intron | 35.0% |
| ACCAAGTCAGAATCAAAAAG+AGG | - | chr6_1:98298843-98298862 | Msa0901560:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_1:98298847-98298866 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_1:98298856-98298875 | Msa0901560:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_1:98298902-98298921 | Msa0901560:intron | 35.0% | |
| GTCACCAAAACTACTATATG+TGG | - | chr6_1:98298948-98298967 | Msa0901560:intron | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_1:98298996-98299015 | Msa0901560:intron | 35.0% | |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6_1:98296934-98296953 | Msa0901560:CDS | 40.0% |
| !!! | TCAGCTAAGTCGTTTTTCTG+GGG | - | chr6_1:98297146-98297165 | Msa0901560:CDS | 40.0% |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6_1:98297442-98297461 | Msa0901560:CDS | 40.0% | |
| TGTACAACCTTCCTTTCCTT+TGG | + | chr6_1:98297574-98297593 | None:intergenic | 40.0% | |
| ! | CCAAATTTTGTGGCAGGTTA+TGG | + | chr6_1:98297608-98297627 | None:intergenic | 40.0% |
| CCATAACCTGCCACAAAATT+TGG | - | chr6_1:98297605-98297624 | Msa0901560:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_1:98297770-98297789 | Msa0901560:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_1:98297771-98297790 | Msa0901560:intron | 40.0% | |
| AATGGAGCTCATTTGGGTAA+TGG | - | chr6_1:98297777-98297796 | Msa0901560:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6_1:98297827-98297846 | None:intergenic | 40.0% |
| TTACAATATGGTCGAGGCAA+TGG | + | chr6_1:98297996-98298015 | None:intergenic | 40.0% | |
| GAGCATTTACAATATGGTCG+AGG | + | chr6_1:98298002-98298021 | None:intergenic | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6_1:98298415-98298434 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_1:98298553-98298572 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_1:98298564-98298583 | Msa0901560:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_1:98298568-98298587 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_1:98298627-98298646 | Msa0901560:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6_1:98298665-98298684 | None:intergenic | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_1:98298720-98298739 | Msa0901560:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_1:98298750-98298769 | Msa0901560:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_1:98298795-98298814 | None:intergenic | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_1:98298994-98299013 | None:intergenic | 40.0% | |
| !! | TTCTAGCTTCTCTCATTGGA+AGG | - | chr6_1:98296934-98296953 | Msa0901560:CDS | 40.0% |
| !!! | TCAGCTAAGTCGTTTTTCTG+GGG | - | chr6_1:98297146-98297165 | Msa0901560:CDS | 40.0% |
| AGCAGTCTGATTGGATTCAA+TGG | - | chr6_1:98297442-98297461 | Msa0901560:CDS | 40.0% | |
| TGTACAACCTTCCTTTCCTT+TGG | + | chr6_1:98297574-98297593 | None:intergenic | 40.0% | |
| ! | CCAAATTTTGTGGCAGGTTA+TGG | + | chr6_1:98297608-98297627 | None:intergenic | 40.0% |
| CCATAACCTGCCACAAAATT+TGG | - | chr6_1:98297605-98297624 | Msa0901560:intron | 40.0% | |
| TGGTAGAAATGGAGCTCATT+TGG | - | chr6_1:98297770-98297789 | Msa0901560:intron | 40.0% | |
| GGTAGAAATGGAGCTCATTT+GGG | - | chr6_1:98297771-98297790 | Msa0901560:intron | 40.0% | |
| AATGGAGCTCATTTGGGTAA+TGG | - | chr6_1:98297777-98297796 | Msa0901560:intron | 40.0% | |
| ! | GAAACAATGAACGTCCCTTT+TGG | + | chr6_1:98297827-98297846 | None:intergenic | 40.0% |
| TTACAATATGGTCGAGGCAA+TGG | + | chr6_1:98297996-98298015 | None:intergenic | 40.0% | |
| GAGCATTTACAATATGGTCG+AGG | + | chr6_1:98298002-98298021 | None:intergenic | 40.0% | |
| CAGTTGAGATTCTGTTTGCA+AGG | + | chr6_1:98298415-98298434 | None:intergenic | 40.0% | |
| AGTGAAGGGTAGAAGTGATT+TGG | + | chr6_1:98298553-98298572 | None:intergenic | 40.0% | |
| CCCTTCACTCAAAAGAAAGT+AGG | - | chr6_1:98298564-98298583 | Msa0901560:intron | 40.0% | |
| !! | CCCTACTTTCTTTTGAGTGA+AGG | + | chr6_1:98298568-98298587 | None:intergenic | 40.0% |
| AAATCCGATGAAGCAGACAA+TGG | - | chr6_1:98298627-98298646 | Msa0901560:intron | 40.0% | |
| AGAATTTGAACACGCGAGAT+AGG | + | chr6_1:98298665-98298684 | None:intergenic | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_1:98298720-98298739 | Msa0901560:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_1:98298750-98298769 | Msa0901560:intron | 40.0% |
| !!! | CACCTAACTCTTTTTTCGAC+CGG | + | chr6_1:98298795-98298814 | None:intergenic | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_1:98298994-98299013 | None:intergenic | 40.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6_1:98297328-98297347 | Msa0901560:CDS | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6_1:98297552-98297571 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_1:98297555-98297574 | Msa0901560:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_1:98297560-98297579 | Msa0901560:CDS | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_1:98297564-98297583 | Msa0901560:intron | 45.0% | |
| CACAACTACTCGATGCAAGT+CGG | + | chr6_1:98297703-98297722 | None:intergenic | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_1:98298383-98298402 | Msa0901560:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_1:98298384-98298403 | Msa0901560:CDS | 45.0% | |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_1:98298915-98298934 | None:intergenic | 45.0% | |
| TCACGCTGTCAAGACATTGT+TGG | - | chr6_1:98297328-98297347 | Msa0901560:CDS | 45.0% | |
| GAGTAGTCTTCCCAATCAGA+AGG | + | chr6_1:98297552-98297571 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_1:98297555-98297574 | Msa0901560:CDS | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_1:98297560-98297579 | Msa0901560:CDS | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_1:98297564-98297583 | Msa0901560:intron | 45.0% | |
| CACAACTACTCGATGCAAGT+CGG | + | chr6_1:98297703-98297722 | None:intergenic | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_1:98298383-98298402 | Msa0901560:CDS | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_1:98298384-98298403 | Msa0901560:CDS | 45.0% | |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_1:98298915-98298934 | None:intergenic | 45.0% | |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6_1:98297701-98297720 | Msa0901560:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_1:98298403-98298422 | None:intergenic | 50.0% |
| TAATAACGGTCCATGGCGTC+CGG | - | chr6_1:98298467-98298486 | Msa0901560:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_1:98298630-98298649 | Msa0901560:intron | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6_1:98298689-98298708 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_1:98298790-98298809 | Msa0901560:intron | 50.0% | |
| CGACTTGCATCGAGTAGTTG+TGG | - | chr6_1:98297701-98297720 | Msa0901560:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_1:98298403-98298422 | None:intergenic | 50.0% |
| TAATAACGGTCCATGGCGTC+CGG | - | chr6_1:98298467-98298486 | Msa0901560:intron | 50.0% | |
| TCCGATGAAGCAGACAATGG+CGG | - | chr6_1:98298630-98298649 | Msa0901560:intron | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6_1:98298689-98298708 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+AGG | - | chr6_1:98298790-98298809 | Msa0901560:intron | 50.0% | |
| ! | CCTGCCACAAAATTTGGGGC+CGG | - | chr6_1:98297611-98297630 | Msa0901560:intron | 55.0% |
| ! | CTGCCACAAAATTTGGGGCC+GGG | - | chr6_1:98297612-98297631 | Msa0901560:intron | 55.0% |
| ! | ACTCCCGGCCCCAAATTTTG+TGG | + | chr6_1:98297618-98297637 | None:intergenic | 55.0% |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6_1:98297633-98297652 | None:intergenic | 55.0% | |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6_1:98297648-98297667 | Msa0901560:intron | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6_1:98297653-98297672 | Msa0901560:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6_1:98297654-98297673 | Msa0901560:intron | 55.0% |
| AATAACGGTCCATGGCGTCC+GGG | - | chr6_1:98298468-98298487 | Msa0901560:intron | 55.0% | |
| AGAATATCACCCGGACGCCA+TGG | + | chr6_1:98298480-98298499 | None:intergenic | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_1:98298634-98298653 | None:intergenic | 55.0% | |
| ! | CCTGCCACAAAATTTGGGGC+CGG | - | chr6_1:98297611-98297630 | Msa0901560:intron | 55.0% |
| ! | CTGCCACAAAATTTGGGGCC+GGG | - | chr6_1:98297612-98297631 | Msa0901560:intron | 55.0% |
| ! | ACTCCCGGCCCCAAATTTTG+TGG | + | chr6_1:98297618-98297637 | None:intergenic | 55.0% |
| ACTCCGAGCTCATAGACTCC+CGG | + | chr6_1:98297633-98297652 | None:intergenic | 55.0% | |
| ! | GGAGTAGCTCTGTCGACTAG+CGG | - | chr6_1:98297648-98297667 | Msa0901560:intron | 55.0% |
| ! | AGCTCTGTCGACTAGCGGTT+TGG | - | chr6_1:98297653-98297672 | Msa0901560:intron | 55.0% |
| ! | GCTCTGTCGACTAGCGGTTT+GGG | - | chr6_1:98297654-98297673 | Msa0901560:intron | 55.0% |
| AATAACGGTCCATGGCGTCC+GGG | - | chr6_1:98298468-98298487 | Msa0901560:intron | 55.0% | |
| AGAATATCACCCGGACGCCA+TGG | + | chr6_1:98298480-98298499 | None:intergenic | 55.0% | |
| GCCGCCATTGTCTGCTTCAT+CGG | + | chr6_1:98298634-98298653 | None:intergenic | 55.0% | |
| ! | CCGGCCCCAAATTTTGTGGC+AGG | + | chr6_1:98297614-98297633 | None:intergenic | 60.0% |
| ! | CCGGCCCCAAATTTTGTGGC+AGG | + | chr6_1:98297614-98297633 | None:intergenic | 60.0% |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6_1:98297627-98297646 | Msa0901560:intron | 65.0% | |
| GGGCCGGGAGTCTATGAGCT+CGG | - | chr6_1:98297627-98297646 | Msa0901560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98296896 | 98299079 | 98296896 | ID=Msa0901560;Name=Msa0901560 |
| chr6_1 | mRNA | 98296896 | 98299079 | 98296896 | ID=Msa0901560-mRNA-1;Parent=Msa0901560;Name=Msa0901560-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|3|0|367 |
| chr6_1 | exon | 98299020 | 98299079 | 98299020 | ID=Msa0901560-mRNA-1:exon:17342;Parent=Msa0901560-mRNA-1 |
| chr6_1 | exon | 98298082 | 98298438 | 98298082 | ID=Msa0901560-mRNA-1:exon:17341;Parent=Msa0901560-mRNA-1 |
| chr6_1 | exon | 98296896 | 98297582 | 98296896 | ID=Msa0901560-mRNA-1:exon:17340;Parent=Msa0901560-mRNA-1 |
| chr6_1 | CDS | 98299020 | 98299079 | 98299020 | ID=Msa0901560-mRNA-1:cds;Parent=Msa0901560-mRNA-1 |
| chr6_1 | CDS | 98298082 | 98298438 | 98298082 | ID=Msa0901560-mRNA-1:cds;Parent=Msa0901560-mRNA-1 |
| chr6_1 | CDS | 98296896 | 98297582 | 98296896 | ID=Msa0901560-mRNA-1:cds;Parent=Msa0901560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
