Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901590 | XP_003620925.1 | 81.250 | 368 | 32 | 2 | 8 | 338 | 1 | 368 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901590 | sp|F4K933|ET2_ARATH | 35.849 | 371 | 181 | 10 | 8 | 335 | 15 | 371 | 2.84e-60 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901590 | G7KJT8 | 81.250 | 368 | 32 | 2 | 8 | 338 | 1 | 368 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0901590 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901590 | MtrunA17_Chr6g0488451 | 81.250 | 368 | 32 | 2 | 8 | 338 | 1 | 368 | 0.0 | 603 |
| Msa0901590 | MtrunA17_Chr7g0256351 | 63.830 | 376 | 88 | 3 | 6 | 333 | 3 | 378 | 1.12e-162 | 459 |
| Msa0901590 | MtrunA17_Chr6g0488421 | 42.857 | 133 | 60 | 3 | 90 | 208 | 20 | 150 | 4.20e-26 | 108 |
| Msa0901590 | MtrunA17_Chr6g0488431 | 49.074 | 108 | 24 | 1 | 6 | 82 | 1 | 108 | 2.70e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901590 | AT5G56780.1 | 35.849 | 371 | 181 | 10 | 8 | 335 | 15 | 371 | 2.89e-61 | 203 |
| Msa0901590 | AT4G26170.1 | 38.095 | 147 | 72 | 3 | 190 | 334 | 264 | 393 | 4.69e-19 | 88.2 |
| Msa0901590 | AT4G26170.1 | 32.450 | 151 | 58 | 4 | 224 | 331 | 355 | 504 | 2.18e-12 | 68.2 |
| Msa0901590 | AT5G56770.1 | 31.765 | 170 | 58 | 4 | 8 | 141 | 54 | 201 | 2.35e-16 | 78.2 |
Find 61 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCATGTTTAATATTT+TGG | 0.103204 | 6_1:+98339023 | None:intergenic |
| GGCAACTTGTTTGATTTAAT+TGG | 0.166375 | 6_1:+98339313 | None:intergenic |
| TAAAATTTGTGGAGTGATTT+TGG | 0.187241 | 6_1:-98339161 | Msa0901590:CDS |
| ATCAATTATTTCTAATTAAT+AGG | 0.256718 | 6_1:+98338836 | None:intergenic |
| AATTCCACATATAATAGTTT+TGG | 0.286040 | 6_1:+98338952 | None:intergenic |
| GTTTCCCAATTGTTTATAGA+TGG | 0.290530 | 6_1:-98340010 | Msa0901590:CDS |
| TGTAGAAGACAACCAGTTAA+AGG | 0.297867 | 6_1:-98338908 | Msa0901590:CDS |
| TGGTAGAAATGGTGCTCATT+TGG | 0.332950 | 6_1:-98340105 | Msa0901590:CDS |
| GAAACAATGAAAGTCTCTTT+TGG | 0.337880 | 6_1:+98340051 | None:intergenic |
| GTTGTATCTTGAACTATCTT+AGG | 0.344160 | 6_1:+98339208 | None:intergenic |
| TCGGATTTGTTATCTTTCAT+AGG | 0.354876 | 6_1:+98339292 | None:intergenic |
| ATGCTCAACAAAATTTCTTC+AGG | 0.367505 | 6_1:-98339400 | Msa0901590:CDS |
| GGTAGAAATGGTGCTCATTT+GGG | 0.371140 | 6_1:-98340104 | Msa0901590:CDS |
| AGTGAAAGGTAGAAGTGATT+TGG | 0.378345 | 6_1:+98339354 | None:intergenic |
| AGCTGCATCTACTAACGGTT+TGG | 0.381586 | 6_1:-98340222 | Msa0901590:CDS |
| CGAGTAGTTGTGGTTTATCT+AGG | 0.384073 | 6_1:-98340164 | Msa0901590:CDS |
| CTCCAATGTTATGGTAGAAA+TGG | 0.384187 | 6_1:-98340116 | Msa0901590:CDS |
| GCAAACAGAATCTCAATTGC+TGG | 0.389160 | 6_1:-98339488 | Msa0901590:CDS |
| AAAAGATGTCATGAGCATAA+AGG | 0.394049 | 6_1:-98338881 | Msa0901590:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | 6_1:+98340005 | None:intergenic |
| TGAATGTGAACACGCGAGAT+AGG | 0.403942 | 6_1:+98339242 | None:intergenic |
| TTTCATGAGATCTTTCTTCA+AGG | 0.405599 | 6_1:-98340032 | Msa0901590:CDS |
| AGACTCTCAGCCATTGTTTG+TGG | 0.408188 | 6_1:+98338992 | None:intergenic |
| GCTGCATCTACTAACGGTTT+GGG | 0.411903 | 6_1:-98340221 | Msa0901590:CDS |
| AAAGATGTCATGAGCATAAA+GGG | 0.418982 | 6_1:-98338880 | Msa0901590:CDS |
| TGTTTGCAAGGCATCTCCCT+TGG | 0.436980 | 6_1:+98339504 | None:intergenic |
| GAGAAGAGTGGTAAAATTTG+TGG | 0.450994 | 6_1:-98339172 | Msa0901590:CDS |
| AAATCCGATGAAGCAGATAA+TGG | 0.464361 | 6_1:-98339277 | Msa0901590:CDS |
| TTTCCCAATTGTTTATAGAT+GGG | 0.470064 | 6_1:-98340009 | Msa0901590:CDS |
| AGAACAAGACTCCAATGTTA+TGG | 0.472021 | 6_1:-98340125 | Msa0901590:CDS |
| CCTTTCACTCGAAAGAAAGT+AGG | 0.487201 | 6_1:-98339340 | Msa0901590:CDS |
| GTTCGGTGTCATGAACATAA+AGG | 0.489630 | 6_1:-98339097 | Msa0901590:CDS |
| GCTTGGAAAACAATTAATAA+CGG | 0.495158 | 6_1:-98339451 | Msa0901590:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.501782 | 6_1:+98340006 | None:intergenic |
| GCCGCCATTATCTGCTTCAT+CGG | 0.502905 | 6_1:+98339273 | None:intergenic |
| TGGGTACATTTGATTATGCT+TGG | 0.505756 | 6_1:-98339468 | Msa0901590:CDS |
| CCTACTTTCTTTCGAGTGAA+AGG | 0.512604 | 6_1:+98339340 | None:intergenic |
| CAATTGAGATTCTGTTTGCA+AGG | 0.513206 | 6_1:+98339492 | None:intergenic |
| AATGGTGCTCATTTGGGTAA+TGG | 0.514996 | 6_1:-98340098 | Msa0901590:CDS |
| AACTGGTTGTCTTCTACAAG+TGG | 0.517479 | 6_1:+98338913 | None:intergenic |
| CACCATTTCTACCATAACAT+TGG | 0.519378 | 6_1:+98340114 | None:intergenic |
| ATGATTCTAACTTCTCCCAT+TGG | 0.519999 | 6_1:-98340910 | Msa0901590:CDS |
| GTCACCAAAACTATTATATG+TGG | 0.524845 | 6_1:-98338956 | Msa0901590:CDS |
| CTTTCACTCGAAAGAAAGTA+GGG | 0.525674 | 6_1:-98339339 | Msa0901590:CDS |
| AATAACGGTCCACGGCGTCC+GGG | 0.559160 | 6_1:-98339436 | Msa0901590:CDS |
| GATATGAATGACCTTCCAAT+GGG | 0.566818 | 6_1:+98340895 | None:intergenic |
| TTCTAACTTCTCCCATTGGA+AGG | 0.569581 | 6_1:-98340906 | Msa0901590:intron |
| TGATATGAATGACCTTCCAA+TGG | 0.576282 | 6_1:+98340894 | None:intergenic |
| TGACTCGCGTCGAGTAGTTG+TGG | 0.583314 | 6_1:-98340174 | Msa0901590:CDS |
| CAAACAGAATCTCAATTGCT+GGG | 0.600406 | 6_1:-98339487 | Msa0901590:CDS |
| GTTGAACAGATGCAGACCAA+GGG | 0.612709 | 6_1:-98339520 | Msa0901590:intron |
| TGTTGAACAGATGCAGACCA+AGG | 0.614794 | 6_1:-98339521 | Msa0901590:intron |
| TGAAGATCTTCCACAAACAA+TGG | 0.618416 | 6_1:-98339002 | Msa0901590:CDS |
| GGAGTAGCTGCATCTACTAA+CGG | 0.624538 | 6_1:-98340227 | Msa0901590:CDS |
| AGAATATCACCCGGACGCCG+TGG | 0.625598 | 6_1:+98339427 | None:intergenic |
| CTGCATCTACTAACGGTTTG+GGG | 0.633639 | 6_1:-98340220 | Msa0901590:CDS |
| AAACAATTAATAACGGTCCA+CGG | 0.635588 | 6_1:-98339444 | Msa0901590:CDS |
| TTCTATTTGTACAAATACGC+CGG | 0.636888 | 6_1:-98339131 | Msa0901590:CDS |
| AGCATTTCAAGAATATCACC+CGG | 0.651967 | 6_1:+98339418 | None:intergenic |
| GAACTATCTTAGGACGCGAG+CGG | 0.662033 | 6_1:+98339218 | None:intergenic |
| TCCGATGAAGCAGATAATGG+CGG | 0.694022 | 6_1:-98339274 | Msa0901590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_1:98339051-98339070 | None:intergenic | 10.0% |
| !! | ACACATATATAATAATTAAT+AGG | + | chr6_1:98339080-98339099 | None:intergenic | 10.0% |
| !! | AATTAAAATTAATAGATTAG+AGG | + | chr6_1:98339051-98339070 | None:intergenic | 10.0% |
| !! | ACACATATATAATAATTAAT+AGG | + | chr6_1:98339080-98339099 | None:intergenic | 10.0% |
| !! | TTAAATGTTCCATTTATTAA+AGG | + | chr6_1:98338880-98338899 | None:intergenic | 15.0% |
| !!! | TTTCAGATAAGTAATTTTTT+GGG | - | chr6_1:98339154-98339173 | Msa0901590:CDS | 15.0% |
| !!! | TTTTTTAATGCTTTCAATTT+AGG | - | chr6_1:98339184-98339203 | Msa0901590:CDS | 15.0% |
| !! | AAAAATCAACTTATAGTTAT+TGG | + | chr6_1:98339222-98339241 | None:intergenic | 15.0% |
| !! | ACTGAAAAATATTGAATTAA+AGG | - | chr6_1:98339291-98339310 | Msa0901590:CDS | 15.0% |
| !! | CTGAAAAATATTGAATTAAA+GGG | - | chr6_1:98339292-98339311 | Msa0901590:CDS | 15.0% |
| !!! | AATTATTTTCAGATTCTTAT+TGG | - | chr6_1:98339564-98339583 | Msa0901590:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6_1:98340338-98340357 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6_1:98340339-98340358 | None:intergenic | 15.0% |
| !! | TTAAATGTTCCATTTATTAA+AGG | + | chr6_1:98338880-98338899 | None:intergenic | 15.0% |
| !!! | TTTCAGATAAGTAATTTTTT+GGG | - | chr6_1:98339154-98339173 | Msa0901590:CDS | 15.0% |
| !!! | TTTTTTAATGCTTTCAATTT+AGG | - | chr6_1:98339184-98339203 | Msa0901590:CDS | 15.0% |
| !! | AAAAATCAACTTATAGTTAT+TGG | + | chr6_1:98339222-98339241 | None:intergenic | 15.0% |
| !! | ACTGAAAAATATTGAATTAA+AGG | - | chr6_1:98339291-98339310 | Msa0901590:CDS | 15.0% |
| !! | CTGAAAAATATTGAATTAAA+GGG | - | chr6_1:98339292-98339311 | Msa0901590:CDS | 15.0% |
| !!! | AATTATTTTCAGATTCTTAT+TGG | - | chr6_1:98339564-98339583 | Msa0901590:intron | 15.0% |
| !!! | GCATTTATATTTAATCTTTT+GGG | + | chr6_1:98340338-98340357 | None:intergenic | 15.0% |
| !!! | TGCATTTATATTTAATCTTT+TGG | + | chr6_1:98340339-98340358 | None:intergenic | 15.0% |
| !! | ACATTAGAACCTTTAATAAA+TGG | - | chr6_1:98338868-98338887 | Msa0901590:CDS | 20.0% |
| !! | AATAAATGGAACATTTAAAG+AGG | - | chr6_1:98338882-98338901 | Msa0901590:CDS | 20.0% |
| !!! | GTTTCAGATAAGTAATTTTT+TGG | - | chr6_1:98339153-98339172 | Msa0901590:CDS | 20.0% |
| !!! | TTCAGATAAGTAATTTTTTG+GGG | - | chr6_1:98339155-98339174 | Msa0901590:CDS | 20.0% |
| !! | TCAATTTATTAAGATCAAGA+TGG | - | chr6_1:98339967-98339986 | Msa0901590:intron | 20.0% |
| !! | CAAAATGAACATATACAATA+TGG | + | chr6_1:98340047-98340066 | None:intergenic | 20.0% |
| !! | AATATATGTATCTCAAATCA+TGG | + | chr6_1:98340076-98340095 | None:intergenic | 20.0% |
| !! | TAATTAAGAGCTAAGTTATA+TGG | - | chr6_1:98340158-98340177 | Msa0901590:CDS | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+GGG | - | chr6_1:98340159-98340178 | Msa0901590:CDS | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_1:98340894-98340913 | None:intergenic | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_1:98340965-98340984 | None:intergenic | 20.0% |
| !! | ACATTAGAACCTTTAATAAA+TGG | - | chr6_1:98338868-98338887 | Msa0901590:CDS | 20.0% |
| !! | AATAAATGGAACATTTAAAG+AGG | - | chr6_1:98338882-98338901 | Msa0901590:CDS | 20.0% |
| !!! | GTTTCAGATAAGTAATTTTT+TGG | - | chr6_1:98339153-98339172 | Msa0901590:CDS | 20.0% |
| !!! | TTCAGATAAGTAATTTTTTG+GGG | - | chr6_1:98339155-98339174 | Msa0901590:CDS | 20.0% |
| !! | TCAATTTATTAAGATCAAGA+TGG | - | chr6_1:98339967-98339986 | Msa0901590:intron | 20.0% |
| !! | CAAAATGAACATATACAATA+TGG | + | chr6_1:98340047-98340066 | None:intergenic | 20.0% |
| !! | AATATATGTATCTCAAATCA+TGG | + | chr6_1:98340076-98340095 | None:intergenic | 20.0% |
| !! | TAATTAAGAGCTAAGTTATA+TGG | - | chr6_1:98340158-98340177 | Msa0901590:CDS | 20.0% |
| !! | AATTAAGAGCTAAGTTATAT+GGG | - | chr6_1:98340159-98340178 | Msa0901590:CDS | 20.0% |
| !!! | CAACATCATGTTTAATATTT+TGG | + | chr6_1:98340894-98340913 | None:intergenic | 20.0% |
| !!! | AATTCCACATATAATAGTTT+TGG | + | chr6_1:98340965-98340984 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTCCATGAGACA+CGG | - | chr6_1:98338941-98338960 | Msa0901590:CDS | 25.0% |
| !! | AATCTGAAGGATTTGAAATA+TGG | - | chr6_1:98339435-98339454 | Msa0901590:CDS | 25.0% |
| ! | TGATGACCATTAAATCAAAT+CGG | + | chr6_1:98339466-98339485 | None:intergenic | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_1:98339905-98339924 | Msa0901590:intron | 25.0% |
| ! | GCTTGGAAAACAATTAATAA+CGG | - | chr6_1:98340463-98340482 | Msa0901590:intron | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_1:98340753-98340772 | Msa0901590:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_1:98340976-98340995 | Msa0901590:intron | 25.0% |
| !!! | ATTTTAATTTCCATGAGACA+CGG | - | chr6_1:98338941-98338960 | Msa0901590:CDS | 25.0% |
| !! | AATCTGAAGGATTTGAAATA+TGG | - | chr6_1:98339435-98339454 | Msa0901590:CDS | 25.0% |
| ! | TGATGACCATTAAATCAAAT+CGG | + | chr6_1:98339466-98339485 | None:intergenic | 25.0% |
| ! | TTTCCCAATTGTTTATAGAT+GGG | - | chr6_1:98339905-98339924 | Msa0901590:intron | 25.0% |
| ! | GCTTGGAAAACAATTAATAA+CGG | - | chr6_1:98340463-98340482 | Msa0901590:intron | 25.0% |
| !! | TAAAATTTGTGGAGTGATTT+TGG | - | chr6_1:98340753-98340772 | Msa0901590:intron | 25.0% |
| !!! | TGTGGAATTATTTTGAAAGA+TGG | - | chr6_1:98340976-98340995 | Msa0901590:intron | 25.0% |
| TTAAAGAGGAACGCAAATAA+CGG | - | chr6_1:98338896-98338915 | Msa0901590:CDS | 30.0% | |
| !!! | TTTTAATTTCCATGAGACAC+GGG | - | chr6_1:98338942-98338961 | Msa0901590:CDS | 30.0% |
| ! | TGAAGGATTTGAAATATGGA+CGG | - | chr6_1:98339439-98339458 | Msa0901590:CDS | 30.0% |
| ! | GAAACAATGAAAGTCTCTTT+TGG | + | chr6_1:98339866-98339885 | None:intergenic | 30.0% |
| TTTCATGAGATCTTTCTTCA+AGG | - | chr6_1:98339882-98339901 | Msa0901590:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_1:98339904-98339923 | Msa0901590:intron | 30.0% | |
| AATGCATGAAATGTACTTAC+AGG | + | chr6_1:98339933-98339952 | None:intergenic | 30.0% | |
| GAACATATACAATATGGTCA+CGG | + | chr6_1:98340041-98340060 | None:intergenic | 30.0% | |
| ! | TTATATGGGTTTGGAAGTAT+AGG | - | chr6_1:98340173-98340192 | Msa0901590:CDS | 30.0% |
| GAGTTAATCGATTAAGTCTA+TGG | - | chr6_1:98340241-98340260 | Msa0901590:intron | 30.0% | |
| CTGTTCAACAAATGAATCAT+TGG | + | chr6_1:98340383-98340402 | None:intergenic | 30.0% | |
| AAACAATTAATAACGGTCCA+CGG | - | chr6_1:98340470-98340489 | Msa0901590:intron | 30.0% | |
| ATGCTCAACAAAATTTCTTC+AGG | - | chr6_1:98340514-98340533 | Msa0901590:intron | 30.0% | |
| ! | GGCAACTTGTTTGATTTAAT+TGG | + | chr6_1:98340604-98340623 | None:intergenic | 30.0% |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_1:98340625-98340644 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_1:98340709-98340728 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_1:98340740-98340759 | None:intergenic | 30.0% |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_1:98340783-98340802 | Msa0901590:intron | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6_1:98340958-98340977 | Msa0901590:CDS | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_1:98341021-98341040 | None:intergenic | 30.0% |
| AAAAGATGTCATGAGCATAA+AGG | - | chr6_1:98341033-98341052 | Msa0901590:intron | 30.0% | |
| AAAGATGTCATGAGCATAAA+GGG | - | chr6_1:98341034-98341053 | Msa0901590:intron | 30.0% | |
| TTAAAGAGGAACGCAAATAA+CGG | - | chr6_1:98338896-98338915 | Msa0901590:CDS | 30.0% | |
| !!! | TTTTAATTTCCATGAGACAC+GGG | - | chr6_1:98338942-98338961 | Msa0901590:CDS | 30.0% |
| ! | TGAAGGATTTGAAATATGGA+CGG | - | chr6_1:98339439-98339458 | Msa0901590:CDS | 30.0% |
| ! | GAAACAATGAAAGTCTCTTT+TGG | + | chr6_1:98339866-98339885 | None:intergenic | 30.0% |
| TTTCATGAGATCTTTCTTCA+AGG | - | chr6_1:98339882-98339901 | Msa0901590:intron | 30.0% | |
| GTTTCCCAATTGTTTATAGA+TGG | - | chr6_1:98339904-98339923 | Msa0901590:intron | 30.0% | |
| AATGCATGAAATGTACTTAC+AGG | + | chr6_1:98339933-98339952 | None:intergenic | 30.0% | |
| GAACATATACAATATGGTCA+CGG | + | chr6_1:98340041-98340060 | None:intergenic | 30.0% | |
| ! | TTATATGGGTTTGGAAGTAT+AGG | - | chr6_1:98340173-98340192 | Msa0901590:CDS | 30.0% |
| GAGTTAATCGATTAAGTCTA+TGG | - | chr6_1:98340241-98340260 | Msa0901590:intron | 30.0% | |
| CTGTTCAACAAATGAATCAT+TGG | + | chr6_1:98340383-98340402 | None:intergenic | 30.0% | |
| AAACAATTAATAACGGTCCA+CGG | - | chr6_1:98340470-98340489 | Msa0901590:intron | 30.0% | |
| ATGCTCAACAAAATTTCTTC+AGG | - | chr6_1:98340514-98340533 | Msa0901590:intron | 30.0% | |
| ! | GGCAACTTGTTTGATTTAAT+TGG | + | chr6_1:98340604-98340623 | None:intergenic | 30.0% |
| !! | TCGGATTTGTTATCTTTCAT+AGG | + | chr6_1:98340625-98340644 | None:intergenic | 30.0% |
| GTTGTATCTTGAACTATCTT+AGG | + | chr6_1:98340709-98340728 | None:intergenic | 30.0% | |
| ! | AATTTTACCACTCTTCTCAA+CGG | + | chr6_1:98340740-98340759 | None:intergenic | 30.0% |
| TTCTATTTGTACAAATACGC+CGG | - | chr6_1:98340783-98340802 | Msa0901590:intron | 30.0% | |
| GTCACCAAAACTATTATATG+TGG | - | chr6_1:98340958-98340977 | Msa0901590:CDS | 30.0% | |
| ! | CATCTTTTTCTTCCTTTAAC+TGG | + | chr6_1:98341021-98341040 | None:intergenic | 30.0% |
| AAAAGATGTCATGAGCATAA+AGG | - | chr6_1:98341033-98341052 | Msa0901590:intron | 30.0% | |
| AAAGATGTCATGAGCATAAA+GGG | - | chr6_1:98341034-98341053 | Msa0901590:intron | 30.0% | |
| ATGATTCTAACTTCTCCCAT+TGG | - | chr6_1:98339004-98339023 | Msa0901590:CDS | 35.0% | |
| GATATGAATGACCTTCCAAT+GGG | + | chr6_1:98339022-98339041 | None:intergenic | 35.0% | |
| TGATATGAATGACCTTCCAA+TGG | + | chr6_1:98339023-98339042 | None:intergenic | 35.0% | |
| TTCTTATTGGTCCTACTGAT+TGG | - | chr6_1:98339577-98339596 | Msa0901590:intron | 35.0% | |
| ! | TCTTATTGGTCCTACTGATT+GGG | - | chr6_1:98339578-98339597 | Msa0901590:intron | 35.0% |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6_1:98339789-98339808 | Msa0901590:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_1:98339798-98339817 | Msa0901590:intron | 35.0% | |
| CACCATTTCTACCATAACAT+TGG | + | chr6_1:98339803-98339822 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6_1:98339911-98339930 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_1:98340019-98340038 | None:intergenic | 35.0% |
| AGAGCTAAGTTATATGGGTT+TGG | - | chr6_1:98340164-98340183 | Msa0901590:CDS | 35.0% | |
| ATCGATTAACTCACTACAAG+AGG | + | chr6_1:98340233-98340252 | None:intergenic | 35.0% | |
| CAATTGAGATTCTGTTTGCA+AGG | + | chr6_1:98340425-98340444 | None:intergenic | 35.0% | |
| CAAACAGAATCTCAATTGCT+GGG | - | chr6_1:98340427-98340446 | Msa0901590:intron | 35.0% | |
| TGGGTACATTTGATTATGCT+TGG | - | chr6_1:98340446-98340465 | Msa0901590:intron | 35.0% | |
| AGCATTTCAAGAATATCACC+CGG | + | chr6_1:98340499-98340518 | None:intergenic | 35.0% | |
| AGTGAAAGGTAGAAGTGATT+TGG | + | chr6_1:98340563-98340582 | None:intergenic | 35.0% | |
| CTTTCACTCGAAAGAAAGTA+GGG | - | chr6_1:98340575-98340594 | Msa0901590:intron | 35.0% | |
| AAATCCGATGAAGCAGATAA+TGG | - | chr6_1:98340637-98340656 | Msa0901590:intron | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_1:98340742-98340761 | Msa0901590:intron | 35.0% | |
| ACCAAGTCAGAATCAAAAAG+AGG | - | chr6_1:98340853-98340872 | Msa0901590:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_1:98340857-98340876 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_1:98340866-98340885 | Msa0901590:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_1:98340912-98340931 | Msa0901590:CDS | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_1:98341006-98341025 | Msa0901590:intron | 35.0% | |
| ATGATTCTAACTTCTCCCAT+TGG | - | chr6_1:98339004-98339023 | Msa0901590:CDS | 35.0% | |
| GATATGAATGACCTTCCAAT+GGG | + | chr6_1:98339022-98339041 | None:intergenic | 35.0% | |
| TGATATGAATGACCTTCCAA+TGG | + | chr6_1:98339023-98339042 | None:intergenic | 35.0% | |
| TTCTTATTGGTCCTACTGAT+TGG | - | chr6_1:98339577-98339596 | Msa0901590:intron | 35.0% | |
| ! | TCTTATTGGTCCTACTGATT+GGG | - | chr6_1:98339578-98339597 | Msa0901590:intron | 35.0% |
| AGAACAAGACTCCAATGTTA+TGG | - | chr6_1:98339789-98339808 | Msa0901590:intron | 35.0% | |
| CTCCAATGTTATGGTAGAAA+TGG | - | chr6_1:98339798-98339817 | Msa0901590:intron | 35.0% | |
| CACCATTTCTACCATAACAT+TGG | + | chr6_1:98339803-98339822 | None:intergenic | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | chr6_1:98339911-98339930 | None:intergenic | 35.0% | |
| ! | GCAATGGTAATCTAGCATTT+TGG | + | chr6_1:98340019-98340038 | None:intergenic | 35.0% |
| AGAGCTAAGTTATATGGGTT+TGG | - | chr6_1:98340164-98340183 | Msa0901590:CDS | 35.0% | |
| ATCGATTAACTCACTACAAG+AGG | + | chr6_1:98340233-98340252 | None:intergenic | 35.0% | |
| CAATTGAGATTCTGTTTGCA+AGG | + | chr6_1:98340425-98340444 | None:intergenic | 35.0% | |
| CAAACAGAATCTCAATTGCT+GGG | - | chr6_1:98340427-98340446 | Msa0901590:intron | 35.0% | |
| TGGGTACATTTGATTATGCT+TGG | - | chr6_1:98340446-98340465 | Msa0901590:intron | 35.0% | |
| AGCATTTCAAGAATATCACC+CGG | + | chr6_1:98340499-98340518 | None:intergenic | 35.0% | |
| AGTGAAAGGTAGAAGTGATT+TGG | + | chr6_1:98340563-98340582 | None:intergenic | 35.0% | |
| CTTTCACTCGAAAGAAAGTA+GGG | - | chr6_1:98340575-98340594 | Msa0901590:intron | 35.0% | |
| AAATCCGATGAAGCAGATAA+TGG | - | chr6_1:98340637-98340656 | Msa0901590:intron | 35.0% | |
| GAGAAGAGTGGTAAAATTTG+TGG | - | chr6_1:98340742-98340761 | Msa0901590:intron | 35.0% | |
| ACCAAGTCAGAATCAAAAAG+AGG | - | chr6_1:98340853-98340872 | Msa0901590:intron | 35.0% | |
| !! | TCCTCTTTTTGATTCTGACT+TGG | + | chr6_1:98340857-98340876 | None:intergenic | 35.0% |
| CAAAAAGAGGAAATGCTTGT+AGG | - | chr6_1:98340866-98340885 | Msa0901590:intron | 35.0% | |
| TGAAGATCTTCCACAAACAA+TGG | - | chr6_1:98340912-98340931 | Msa0901590:CDS | 35.0% | |
| TGTAGAAGACAACCAGTTAA+AGG | - | chr6_1:98341006-98341025 | Msa0901590:intron | 35.0% | |
| TTCTAACTTCTCCCATTGGA+AGG | - | chr6_1:98339008-98339027 | Msa0901590:CDS | 40.0% | |
| CGTGAAGGATGTGAAATTGT+TGG | + | chr6_1:98339329-98339348 | None:intergenic | 40.0% | |
| ACAATTTCACATCCTTCACG+CGG | - | chr6_1:98339329-98339348 | Msa0901590:CDS | 40.0% | |
| GTACAGAGCTTGAAATCTGA+AGG | - | chr6_1:98339422-98339441 | Msa0901590:CDS | 40.0% | |
| ! | GACGGTCCGATTTGATTTAA+TGG | - | chr6_1:98339457-98339476 | Msa0901590:CDS | 40.0% |
| TGTAGATCCTTCCTTTCCTT+TGG | + | chr6_1:98339613-98339632 | None:intergenic | 40.0% | |
| CCATAACCTGCCAGAAAATT+CGG | - | chr6_1:98339644-98339663 | Msa0901590:intron | 40.0% | |
| CGAGTAGTTGTGGTTTATCT+AGG | - | chr6_1:98339750-98339769 | Msa0901590:intron | 40.0% | |
| TGGTAGAAATGGTGCTCATT+TGG | - | chr6_1:98339809-98339828 | Msa0901590:intron | 40.0% | |
| GGTAGAAATGGTGCTCATTT+GGG | - | chr6_1:98339810-98339829 | Msa0901590:intron | 40.0% | |
| AATGGTGCTCATTTGGGTAA+TGG | - | chr6_1:98339816-98339835 | Msa0901590:intron | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6_1:98339912-98339931 | None:intergenic | 40.0% | |
| ATACAATATGGTCACGGCAA+TGG | + | chr6_1:98340035-98340054 | None:intergenic | 40.0% | |
| GCAAACAGAATCTCAATTGC+TGG | - | chr6_1:98340426-98340445 | Msa0901590:intron | 40.0% | |
| ! | CCTACTTTCTTTCGAGTGAA+AGG | + | chr6_1:98340577-98340596 | None:intergenic | 40.0% |
| CCTTTCACTCGAAAGAAAGT+AGG | - | chr6_1:98340574-98340593 | Msa0901590:intron | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_1:98340730-98340749 | Msa0901590:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_1:98340760-98340779 | Msa0901590:intron | 40.0% |
| !! | GTTCGGTGTCATGAACATAA+AGG | - | chr6_1:98340817-98340836 | Msa0901590:intron | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_1:98341004-98341023 | None:intergenic | 40.0% | |
| TTCTAACTTCTCCCATTGGA+AGG | - | chr6_1:98339008-98339027 | Msa0901590:CDS | 40.0% | |
| CGTGAAGGATGTGAAATTGT+TGG | + | chr6_1:98339329-98339348 | None:intergenic | 40.0% | |
| ACAATTTCACATCCTTCACG+CGG | - | chr6_1:98339329-98339348 | Msa0901590:CDS | 40.0% | |
| GTACAGAGCTTGAAATCTGA+AGG | - | chr6_1:98339422-98339441 | Msa0901590:CDS | 40.0% | |
| ! | GACGGTCCGATTTGATTTAA+TGG | - | chr6_1:98339457-98339476 | Msa0901590:CDS | 40.0% |
| TGTAGATCCTTCCTTTCCTT+TGG | + | chr6_1:98339613-98339632 | None:intergenic | 40.0% | |
| CCATAACCTGCCAGAAAATT+CGG | - | chr6_1:98339644-98339663 | Msa0901590:intron | 40.0% | |
| CGAGTAGTTGTGGTTTATCT+AGG | - | chr6_1:98339750-98339769 | Msa0901590:intron | 40.0% | |
| TGGTAGAAATGGTGCTCATT+TGG | - | chr6_1:98339809-98339828 | Msa0901590:intron | 40.0% | |
| GGTAGAAATGGTGCTCATTT+GGG | - | chr6_1:98339810-98339829 | Msa0901590:intron | 40.0% | |
| AATGGTGCTCATTTGGGTAA+TGG | - | chr6_1:98339816-98339835 | Msa0901590:intron | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | chr6_1:98339912-98339931 | None:intergenic | 40.0% | |
| ATACAATATGGTCACGGCAA+TGG | + | chr6_1:98340035-98340054 | None:intergenic | 40.0% | |
| GCAAACAGAATCTCAATTGC+TGG | - | chr6_1:98340426-98340445 | Msa0901590:intron | 40.0% | |
| ! | CCTACTTTCTTTCGAGTGAA+AGG | + | chr6_1:98340577-98340596 | None:intergenic | 40.0% |
| CCTTTCACTCGAAAGAAAGT+AGG | - | chr6_1:98340574-98340593 | Msa0901590:intron | 40.0% | |
| ! | GATTTTTCCGTTGAGAAGAG+TGG | - | chr6_1:98340730-98340749 | Msa0901590:intron | 40.0% |
| ! | TGTGGAGTGATTTTGGATGA+TGG | - | chr6_1:98340760-98340779 | Msa0901590:intron | 40.0% |
| !! | GTTCGGTGTCATGAACATAA+AGG | - | chr6_1:98340817-98340836 | Msa0901590:intron | 40.0% |
| AACTGGTTGTCTTCTACAAG+TGG | + | chr6_1:98341004-98341023 | None:intergenic | 40.0% | |
| GAGTAGTCTTCCCAATCAGT+AGG | + | chr6_1:98339591-98339610 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_1:98339594-98339613 | Msa0901590:intron | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_1:98339599-98339618 | Msa0901590:intron | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_1:98339603-98339622 | Msa0901590:intron | 45.0% | |
| !! | CCGAATTTTCTGGCAGGTTA+TGG | + | chr6_1:98339647-98339666 | None:intergenic | 45.0% |
| !!! | ACTCCAGGTACCGAATTTTC+TGG | + | chr6_1:98339657-98339676 | None:intergenic | 45.0% |
| GGAGTAGCTGCATCTACTAA+CGG | - | chr6_1:98339687-98339706 | Msa0901590:intron | 45.0% | |
| AGCTGCATCTACTAACGGTT+TGG | - | chr6_1:98339692-98339711 | Msa0901590:intron | 45.0% | |
| GCTGCATCTACTAACGGTTT+GGG | - | chr6_1:98339693-98339712 | Msa0901590:intron | 45.0% | |
| CTGCATCTACTAACGGTTTG+GGG | - | chr6_1:98339694-98339713 | Msa0901590:intron | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_1:98340393-98340412 | Msa0901590:intron | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_1:98340394-98340413 | Msa0901590:intron | 45.0% | |
| ! | TCCGATGAAGCAGATAATGG+CGG | - | chr6_1:98340640-98340659 | Msa0901590:intron | 45.0% |
| TGAATGTGAACACGCGAGAT+AGG | + | chr6_1:98340675-98340694 | None:intergenic | 45.0% | |
| !!! | CACCGAACTCTTTTTTCGAC+CGG | + | chr6_1:98340805-98340824 | None:intergenic | 45.0% |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_1:98340925-98340944 | None:intergenic | 45.0% | |
| GAGTAGTCTTCCCAATCAGT+AGG | + | chr6_1:98339591-98339610 | None:intergenic | 45.0% | |
| GATTGGGAAGACTACTCCAA+AGG | - | chr6_1:98339594-98339613 | Msa0901590:intron | 45.0% | |
| GGAAGACTACTCCAAAGGAA+AGG | - | chr6_1:98339599-98339618 | Msa0901590:intron | 45.0% | |
| GACTACTCCAAAGGAAAGGA+AGG | - | chr6_1:98339603-98339622 | Msa0901590:intron | 45.0% | |
| !! | CCGAATTTTCTGGCAGGTTA+TGG | + | chr6_1:98339647-98339666 | None:intergenic | 45.0% |
| !!! | ACTCCAGGTACCGAATTTTC+TGG | + | chr6_1:98339657-98339676 | None:intergenic | 45.0% |
| GGAGTAGCTGCATCTACTAA+CGG | - | chr6_1:98339687-98339706 | Msa0901590:intron | 45.0% | |
| AGCTGCATCTACTAACGGTT+TGG | - | chr6_1:98339692-98339711 | Msa0901590:intron | 45.0% | |
| GCTGCATCTACTAACGGTTT+GGG | - | chr6_1:98339693-98339712 | Msa0901590:intron | 45.0% | |
| CTGCATCTACTAACGGTTTG+GGG | - | chr6_1:98339694-98339713 | Msa0901590:intron | 45.0% | |
| TGTTGAACAGATGCAGACCA+AGG | - | chr6_1:98340393-98340412 | Msa0901590:intron | 45.0% | |
| GTTGAACAGATGCAGACCAA+GGG | - | chr6_1:98340394-98340413 | Msa0901590:intron | 45.0% | |
| ! | TCCGATGAAGCAGATAATGG+CGG | - | chr6_1:98340640-98340659 | Msa0901590:intron | 45.0% |
| TGAATGTGAACACGCGAGAT+AGG | + | chr6_1:98340675-98340694 | None:intergenic | 45.0% | |
| !!! | CACCGAACTCTTTTTTCGAC+CGG | + | chr6_1:98340805-98340824 | None:intergenic | 45.0% |
| AGACTCTCAGCCATTGTTTG+TGG | + | chr6_1:98340925-98340944 | None:intergenic | 45.0% | |
| ACATTTGCACCCGTGTCTCA+TGG | + | chr6_1:98338954-98338973 | None:intergenic | 50.0% | |
| ATGATGTCTTGACCGCGTGA+AGG | + | chr6_1:98339344-98339363 | None:intergenic | 50.0% | |
| TCACGCGGTCAAGACATCAT+TGG | - | chr6_1:98339344-98339363 | Msa0901590:CDS | 50.0% | |
| !!! | CAGGTACCGAATTTTCTGGC+AGG | + | chr6_1:98339653-98339672 | None:intergenic | 50.0% |
| CTGCCAGAAAATTCGGTACC+TGG | - | chr6_1:98339651-98339670 | Msa0901590:intron | 50.0% | |
| GTACCTGGAGTCTATGAGCT+CGG | - | chr6_1:98339666-98339685 | Msa0901590:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_1:98340413-98340432 | None:intergenic | 50.0% |
| GCCGCCATTATCTGCTTCAT+CGG | + | chr6_1:98340644-98340663 | None:intergenic | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6_1:98340699-98340718 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+CGG | - | chr6_1:98340800-98340819 | Msa0901590:intron | 50.0% | |
| ACATTTGCACCCGTGTCTCA+TGG | + | chr6_1:98338954-98338973 | None:intergenic | 50.0% | |
| ATGATGTCTTGACCGCGTGA+AGG | + | chr6_1:98339344-98339363 | None:intergenic | 50.0% | |
| TCACGCGGTCAAGACATCAT+TGG | - | chr6_1:98339344-98339363 | Msa0901590:CDS | 50.0% | |
| !!! | CAGGTACCGAATTTTCTGGC+AGG | + | chr6_1:98339653-98339672 | None:intergenic | 50.0% |
| CTGCCAGAAAATTCGGTACC+TGG | - | chr6_1:98339651-98339670 | Msa0901590:intron | 50.0% | |
| GTACCTGGAGTCTATGAGCT+CGG | - | chr6_1:98339666-98339685 | Msa0901590:intron | 50.0% | |
| ! | TGTTTGCAAGGCATCTCCCT+TGG | + | chr6_1:98340413-98340432 | None:intergenic | 50.0% |
| GCCGCCATTATCTGCTTCAT+CGG | + | chr6_1:98340644-98340663 | None:intergenic | 50.0% | |
| GAACTATCTTAGGACGCGAG+CGG | + | chr6_1:98340699-98340718 | None:intergenic | 50.0% | |
| CGCCGGTCGAAAAAAGAGTT+CGG | - | chr6_1:98340800-98340819 | Msa0901590:intron | 50.0% | |
| ACTCCGAGCTCATAGACTCC+AGG | + | chr6_1:98339672-98339691 | None:intergenic | 55.0% | |
| AACTACTCGACGCGAGTCAG+TGG | + | chr6_1:98339739-98339758 | None:intergenic | 55.0% | |
| TGACTCGCGTCGAGTAGTTG+TGG | - | chr6_1:98339740-98339759 | Msa0901590:intron | 55.0% | |
| TAATAACGGTCCACGGCGTC+CGG | - | chr6_1:98340477-98340496 | Msa0901590:intron | 55.0% | |
| ACTCCGAGCTCATAGACTCC+AGG | + | chr6_1:98339672-98339691 | None:intergenic | 55.0% | |
| AACTACTCGACGCGAGTCAG+TGG | + | chr6_1:98339739-98339758 | None:intergenic | 55.0% | |
| TGACTCGCGTCGAGTAGTTG+TGG | - | chr6_1:98339740-98339759 | Msa0901590:intron | 55.0% | |
| TAATAACGGTCCACGGCGTC+CGG | - | chr6_1:98340477-98340496 | Msa0901590:intron | 55.0% | |
| AATAACGGTCCACGGCGTCC+GGG | - | chr6_1:98340478-98340497 | Msa0901590:intron | 60.0% | |
| AGAATATCACCCGGACGCCG+TGG | + | chr6_1:98340490-98340509 | None:intergenic | 60.0% | |
| AATAACGGTCCACGGCGTCC+GGG | - | chr6_1:98340478-98340497 | Msa0901590:intron | 60.0% | |
| AGAATATCACCCGGACGCCG+TGG | + | chr6_1:98340490-98340509 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98338847 | 98341089 | 98338847 | ID=Msa0901590;Name=Msa0901590 |
| chr6_1 | mRNA | 98338847 | 98341089 | 98338847 | ID=Msa0901590-mRNA-1;Parent=Msa0901590;Name=Msa0901590-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.75|0.33|0.25|4|0|338 |
| chr6_1 | exon | 98341081 | 98341089 | 98341081 | ID=Msa0901590-mRNA-1:exon:17331;Parent=Msa0901590-mRNA-1 |
| chr6_1 | exon | 98340907 | 98340978 | 98340907 | ID=Msa0901590-mRNA-1:exon:17330;Parent=Msa0901590-mRNA-1 |
| chr6_1 | exon | 98340004 | 98340252 | 98340004 | ID=Msa0901590-mRNA-1:exon:17329;Parent=Msa0901590-mRNA-1 |
| chr6_1 | exon | 98338847 | 98339533 | 98338847 | ID=Msa0901590-mRNA-1:exon:17328;Parent=Msa0901590-mRNA-1 |
| chr6_1 | CDS | 98341081 | 98341089 | 98341081 | ID=Msa0901590-mRNA-1:cds;Parent=Msa0901590-mRNA-1 |
| chr6_1 | CDS | 98340907 | 98340978 | 98340907 | ID=Msa0901590-mRNA-1:cds;Parent=Msa0901590-mRNA-1 |
| chr6_1 | CDS | 98340004 | 98340252 | 98340004 | ID=Msa0901590-mRNA-1:cds;Parent=Msa0901590-mRNA-1 |
| chr6_1 | CDS | 98338847 | 98339533 | 98338847 | ID=Msa0901590-mRNA-1:cds;Parent=Msa0901590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
