AlfalfaGEDB | Msa0901600

M. sativa cultivar zhongmu-4 / Msa0901600

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048580 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097100 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901600	XP_003620925.1	58.861	158	14	1	1	107	211	368	1.08e-49	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901600	sp\|A2RQG7\|ET_BRANA	31.200	125	58	2	7	103	203	327	3.63e-12	64.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901600	G7KJT8	58.861	158	14	1	1	107	211	368	5.14e-50	171

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TFs/TRs:

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Gene ID	Type	Classification
Msa0901600	TF	HRT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901600	MtrunA17_Chr6g0488451	58.861	158	14	1	1	107	211	368	9.91e-54	171
Msa0901600	MtrunA17_Chr7g0256351	63.333	90	32	1	2	90	216	305	3.22e-30	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Find 15 sgRNAs with CRISPR-Local

Find 629 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTCATGATCATAA+AGG	0.370970	6_1:-98351559	Msa0901600:CDS
AAAGATGTCATGATCATAAA+GGG	0.444185	6_1:-98351558	Msa0901600:CDS
AAATCCGATGAAGCAGACAA+TGG	0.675612	6_1:-98356765	Msa0901600:CDS
ATCAATTATTTCTAATTAAT+AGG	0.256718	6_1:+98351514	None:intergenic
CTCGCGTGTTCAAATTCAAC+CGG	0.499323	6_1:-98356725	Msa0901600:CDS
GAACTATCTTAGGATGCGAC+CGG	0.556126	6_1:+98356706	None:intergenic
GAGAAGAGTGGTAAAATTTG+TGG	0.450994	6_1:-98356660	Msa0901600:CDS
GCTGCCATTGTCTGCTTCAT+CGG	0.453379	6_1:+98356761	None:intergenic
GTTAGGTGTCATGAACATAA+AGG	0.469142	6_1:-98356585	Msa0901600:CDS
GTTGTATCTTGAACTATCTT+AGG	0.334689	6_1:+98356696	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTATCTTGAACTATCTT+AGG	+	chr6_1:98351618-98351637	None:intergenic	30.0%
TTCTATTTGTACAAAGATGC+CGG	-	chr6_1:98351692-98351711	Msa0901600:intron	30.0%
TTGTGAAAGTGACTCAAAAT+TGG	-	chr6_1:98351833-98351852	Msa0901600:intron	30.0%
AAAATAACAGCACGCAAAAT+CGG	+	chr6_1:98351995-98352014	None:intergenic	30.0%
CCATAAAATTGTACCAAATC+TGG	+	chr6_1:98352038-98352057	None:intergenic	30.0%
TTTGTATAGAGTTTGTCTCT+TGG	-	chr6_1:98352156-98352175	Msa0901600:intron	30.0%
TAACGTTACTCATCATATAG+TGG	-	chr6_1:98352310-98352329	Msa0901600:intron	30.0%
AAAGGATAATCTAGTACCAT+GGG	-	chr6_1:98352579-98352598	Msa0901600:intron	30.0%
AGCAACAACTTTACTTATTC+AGG	-	chr6_1:98352904-98352923	Msa0901600:intron	30.0%
ACAACTTTACTTATTCAGGA+TGG	-	chr6_1:98352908-98352927	Msa0901600:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	98351525	98356808	98351525	ID=Msa0901600;Name=Msa0901600
chr6_1	mRNA	98351525	98356808	98351525	ID=Msa0901600-mRNA-1;Parent=Msa0901600;Name=Msa0901600-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0\|0\|1\|0\|0\|2\|0\|107
chr6_1	exon	98356564	98356808	98356564	ID=Msa0901600-mRNA-1:exon:17348;Parent=Msa0901600-mRNA-1
chr6_1	exon	98351525	98351603	98351525	ID=Msa0901600-mRNA-1:exon:17347;Parent=Msa0901600-mRNA-1
chr6_1	CDS	98356564	98356808	98356564	ID=Msa0901600-mRNA-1:cds;Parent=Msa0901600-mRNA-1
chr6_1	CDS	98351525	98351603	98351525	ID=Msa0901600-mRNA-1:cds;Parent=Msa0901600-mRNA-1

Gene Sequence	>Msa0901600 ATGTTGCCTGTGAAAGATAACAAATCCGATGAAGCAGACAATGGCAGCTACAATTTCCTATCTCGCGTGTTCAAATTCAACCGGTCGCATCCTAAGATAGTTCAAGATACAACTGATTTTTCCGTTGAGAAGAGTGGTAAAATTTGTGGAGTGAATTTGGATGATAGTTCTATTTGTACAAAGATGCCGGTCGAAAAAAGAGTTAGGTGTCATGAACATAAAGGAATGAGAATAAGAACATCCAAAACACAACCAGTTAAAGGAAGAAAAAGATGTCATGATCATAAAGGGAAGAGAATTCGTGCATTTGTTCCTATTAATTAG
Protein sequence	>Msa0901600 MLPVKDNKSDEADNGSYNFLSRVFKFNRSHPKIVQDTTDFSVEKSGKICGVNLDDSSICTKMPVEKRVRCHEHKGMRIRTSKTQPVKGRKRCHDHKGKRIRAFVPIN*