AlfalfaGEDB | Msa0901760

M. sativa cultivar zhongmu-4 / Msa0901760

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901760	RHN51853.1	30.859	256	156	5	13	250	201	453	1.22e-20	105
Msa0901760	RHN51853.1	31.609	174	70	2	9	182	9	133	4.93e-16	92.0
Msa0901760	RHN51853.1	46.383	235	125	1	182	416	255	488	9.97e-69	236

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901760	A0A396HGY8	30.859	256	156	5	13	250	201	453	5.82e-21	105
Msa0901760	A0A396HGY8	31.609	174	70	2	9	182	9	133	2.36e-16	92.0
Msa0901760	A0A396HGY8	46.383	235	125	1	182	416	255	488	4.76e-69	236

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TFs/TRs:

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Gene ID	Type	Classification
Msa0901760	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901760	MtrunA17_Chr6g0473661	46.383	235	125	1	182	416	255	488	9.17e-73	236
Msa0901760	MtrunA17_Chr6g0473661	30.859	256	156	5	13	250	201	453	1.12e-24	105
Msa0901760	MtrunA17_Chr6g0473661	31.609	174	70	2	9	182	9	133	4.54e-20	92.0
Msa0901760	MtrunA17_Chr6g0473651	51.908	131	62	1	182	312	224	353	1.31e-36	137
Msa0901760	MtrunA17_Chr6g0473651	31.214	173	108	3	241	405	23	192	1.66e-23	101
Msa0901760	MtrunA17_Chr6g0473651	43.307	127	72	0	56	182	226	352	1.85e-23	101
Msa0901760	MtrunA17_Chr6g0473651	46.479	71	38	0	112	182	22	92	1.40e-12	68.9
Msa0901760	MtrunA17_Chr1g0156191	37.500	136	84	1	256	391	1	135	9.07e-28	107
Msa0901760	MtrunA17_Chr6g0473921	35.433	127	82	0	290	416	1	127	1.54e-26	103
Msa0901760	MtrunA17_Chr1g0206471	28.049	246	156	6	138	372	16	251	2.21e-25	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 104 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACGACGGTCCAGTT+TGG	0.405460	6_1:+98625130	None:intergenic
AAACCCACCTAAGTCAGACA+TGG	0.685362	6_1:+98626445	None:intergenic
AAACCTATGGTCAGCGGCAG+TGG	0.455398	6_1:-98623172	Msa0901760:CDS
AAACTGGACCGTCGTGATTT+TGG	0.142859	6_1:-98625128	Msa0901760:CDS
AAATCTGTTGTTGATCGTCA+AGG	0.579813	6_1:+98625196	None:intergenic
AACCAGACTTTGCCGTGGTA+TGG	0.440028	6_1:-98623457	Msa0901760:intron
AACGCTTTGGATGCTGCACA+AGG	0.608033	6_1:-98626410	Msa0901760:CDS
AACGTATACCCCAAGTGAGA+TGG	0.579805	6_1:-98625584	Msa0901760:CDS
AATATGCCTTATGCTATGAT+TGG	0.515256	6_1:-98623334	Msa0901760:CDS
AATGAACCTCGGCAACGCAA+GGG	0.607154	6_1:+98623660	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCTTTATTATGGTCCTTT+AGG	-	chr6_1:98623569-98623588	Msa0901760:intron	30.0%
ATCAAACATAACGATATCAG+AGG	+	chr6_1:98623736-98623755	None:intergenic	30.0%
TATGTCCTCATCTATTAGAA+TGG	+	chr6_1:98624112-98624131	None:intergenic	30.0%
TAGTCTTTCAAAAAGCAGTT+AGG	+	chr6_1:98624201-98624220	None:intergenic	30.0%
TACTCCAATAATATCCAAAC+TGG	-	chr6_1:98624455-98624474	Msa0901760:intron	30.0%
ATCAAATCTGCATTTGTAGA+CGG	+	chr6_1:98624931-98624950	None:intergenic	30.0%
ACAAATGCAGATTTGATTAG+AGG	-	chr6_1:98624934-98624953	Msa0901760:intron	30.0%
ACAACATATACTTCAGTTCA+GGG	+	chr6_1:98625028-98625047	None:intergenic	30.0%
AACAACATATACTTCAGTTC+AGG	+	chr6_1:98625029-98625048	None:intergenic	30.0%
ACGAATAACAATCAAATTGC+CGG	+	chr6_1:98625060-98625079	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	98623156	98626465	98623156	ID=Msa0901760;Name=Msa0901760
chr6_1	mRNA	98623156	98626465	98623156	ID=Msa0901760-mRNA-1;Parent=Msa0901760;Name=Msa0901760-mRNA-1;_AED=0.40;_eAED=0.46;_QI=0\|0\|0\|0.6\|0.75\|0.8\|5\|0\|416
chr6_1	exon	98626393	98626465	98626393	ID=Msa0901760-mRNA-1:exon:17459;Parent=Msa0901760-mRNA-1
chr6_1	exon	98625543	98625628	98625543	ID=Msa0901760-mRNA-1:exon:17458;Parent=Msa0901760-mRNA-1
chr6_1	exon	98625055	98625438	98625055	ID=Msa0901760-mRNA-1:exon:17457;Parent=Msa0901760-mRNA-1
chr6_1	exon	98623573	98623959	98623573	ID=Msa0901760-mRNA-1:exon:17456;Parent=Msa0901760-mRNA-1
chr6_1	exon	98623156	98623473	98623156	ID=Msa0901760-mRNA-1:exon:17455;Parent=Msa0901760-mRNA-1
chr6_1	CDS	98626393	98626465	98626393	ID=Msa0901760-mRNA-1:cds;Parent=Msa0901760-mRNA-1
chr6_1	CDS	98625543	98625628	98625543	ID=Msa0901760-mRNA-1:cds;Parent=Msa0901760-mRNA-1
chr6_1	CDS	98625055	98625438	98625055	ID=Msa0901760-mRNA-1:cds;Parent=Msa0901760-mRNA-1
chr6_1	CDS	98623573	98623959	98623573	ID=Msa0901760-mRNA-1:cds;Parent=Msa0901760-mRNA-1
chr6_1	CDS	98623156	98623473	98623156	ID=Msa0901760-mRNA-1:cds;Parent=Msa0901760-mRNA-1

Gene Sequence

>Msa0901760

ATGTCTGACTTAGGTGGGTTTGTTTTAACTGGAAACGCTTTGGATGCTGCACAAGGAATGCTGTCATTGGCAGGTGGGGGTAACGACTTTCATCCAACGTATACCCCAAGTGAGATGGCAATGATGAGGACATACTTCCTTGAATTTGACACTATGTCTGGAATGGGTCGGATGCCTAACTGCTTTTTGAAAGACTATGGTGGTTATATTGAAGACTACGTTATGTTGCGAGATCCAATGAACAATGAGATTGAGGTTCGACTGTATCGCAGAGGCGACAAGCTTTATATGAGGAAAGGTTGGTATGGACTGAAGGACTTCTACAACATTGAGCTTGGTGCATGGATAGACTTGACATATGAAAGACCAAATCTTATGACCTTGACGATCAACAACAGATTTTTCGAGGAAATTTTGTATCCTGCTCACACTACTCCAATAATATCCAAACTGGACCGTCGTGATTTTGGGGGGAATTTGGATGATTTTTTTGAGACATTCACTATTGAATTGACTTACTCGGATGTTAACTCAGGATGTTTGTTAAAGGCGAGGTTACCTTCATGTTTTGCAAAAGAAGTAGGCGTGCATATTGATGATCATGTTATGCTTCGTGATCCAAACAACAATATCATTGTTGTTGAAGTTCAGAAAAAGAATGGCAAGGTCTACTTCAGACAAGGCTGGTCTAGGGTGAAGGATATTTATAACATTGTAGATGGTGCATGGGTCTATCTGAAATATGCGGGGCCTAATCTACTACTCATGACCATAAGAAACAAGGCTGGATTGGAGATACCATATCCATTATCCGATATATCCCTTGCGTTGCCGAGGTTCATTACTTCATCAGGGGAGAGCCAGTTAGTGCATTTTTTCCGCACATCTGTCAAGATTTTGACTTCGTCTGATGTCCTCTCGGGCACTTTGACTTTGCCGTGGTATGGCTTCTGCCAGAAATCCTTGCCACAGAAACCTACCACACTTACGATTGTTGGTCCGAACGGCTGTACATGGAGATGTGATCTGACCTTCGCTGTTGCAAATAATATGCCTTATGCTATGATTGGTGGTGATTGGAACCTGATTTGCACATCGCAGAGGTTGGTTGCAGGCCATGCAGTTAAGTTCGCTGTTGTCCATGACAAAGATAACACAGTCCTTGGTTTCCGACATACCCCAATACACTGCACCCATGGATACTATGTGAAACCTATGGTCAGCGGCAGTGGTCGATATGTGTACCAG

Protein sequence

>Msa0901760

MSDLGGFVLTGNALDAAQGMLSLAGGGNDFHPTYTPSEMAMMRTYFLEFDTMSGMGRMPNCFLKDYGGYIEDYVMLRDPMNNEIEVRLYRRGDKLYMRKGWYGLKDFYNIELGAWIDLTYERPNLMTLTINNRFFEEILYPAHTTPIISKLDRRDFGGNLDDFFETFTIELTYSDVNSGCLLKARLPSCFAKEVGVHIDDHVMLRDPNNNIIVVEVQKKNGKVYFRQGWSRVKDIYNIVDGAWVYLKYAGPNLLLMTIRNKAGLEIPYPLSDISLALPRFITSSGESQLVHFFRTSVKILTSSDVLSGTLTLPWYGFCQKSLPQKPTTLTIVGPNGCTWRCDLTFAVANNMPYAMIGGDWNLICTSQRLVAGHAVKFAVVHDKDNTVLGFRHTPIHCTHGYYVKPMVSGSGRYVYQ