Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903550 | XP_003607052.1 | 97.351 | 151 | 4 | 0 | 1 | 151 | 1 | 151 | 7.98e-105 | 306 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903550 | sp|F4JZT3|ARR24_ARATH | 31.250 | 112 | 77 | 0 | 33 | 144 | 18 | 129 | 8.80e-16 | 72.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0903550 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903550 | MtrunA17_Chr6g0451941 | 97.351 | 151 | 4 | 0 | 1 | 151 | 1 | 151 | 7.34e-109 | 306 |
Msa0903550 | MtrunA17_Chr7g0262351 | 33.628 | 113 | 74 | 1 | 25 | 137 | 14 | 125 | 4.56e-17 | 72.8 |
Msa0903550 | MtrunA17_Chr8g0364781 | 34.259 | 108 | 69 | 1 | 33 | 138 | 12 | 119 | 1.16e-14 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0903550 | AT5G26594.1 | 31.250 | 112 | 77 | 0 | 33 | 144 | 18 | 129 | 8.95e-17 | 72.4 |
Find 30 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCTCGGGTCCATTGATTA+TGG | 0.250485 | 6_2:-764719 | None:intergenic |
AGCAATGCATTCATTGGATA+TGG | 0.328332 | 6_2:-764544 | None:intergenic |
GGTCAAAGGTGTTGGGGTGC+TGG | 0.364151 | 6_2:-765404 | None:intergenic |
CATCATATGCTTGAATCAAT+AGG | 0.390164 | 6_2:+764601 | Msa0903550:CDS |
CTCTCTCGGGTCAAAGGTGT+TGG | 0.401830 | 6_2:-765412 | None:intergenic |
TTTGATTTGCCCATAATCAA+TGG | 0.409566 | 6_2:+764709 | Msa0903550:CDS |
GATCAAAATGTGCAAATGTT+TGG | 0.412226 | 6_2:+765364 | Msa0903550:CDS |
CACTATGTGCAGGCTCTGTT+CGG | 0.424190 | 6_2:-764627 | None:intergenic |
TCTCTCGGGTCAAAGGTGTT+GGG | 0.429071 | 6_2:-765411 | None:intergenic |
ACCTCGGGTCCATTGATTAT+GGG | 0.437317 | 6_2:-764718 | None:intergenic |
TCTACTAGCAATGCATTCAT+TGG | 0.442738 | 6_2:-764550 | None:intergenic |
GTGAGGCAGATGCGTGCAAT+GGG | 0.459873 | 6_2:+765301 | Msa0903550:CDS |
CATATGATGCTCTAAGCGTC+TGG | 0.510351 | 6_2:-764587 | None:intergenic |
TGATGAACACAAAACTCTCT+CGG | 0.519844 | 6_2:-765426 | None:intergenic |
ACAAAACTCTCTCGGGTCAA+AGG | 0.520328 | 6_2:-765418 | None:intergenic |
ATGAATGCATTGCTAGTAGA+TGG | 0.520529 | 6_2:+764553 | Msa0903550:CDS |
GATGAACACAAAACTCTCTC+GGG | 0.532140 | 6_2:-765425 | None:intergenic |
CTCTCGGGTCAAAGGTGTTG+GGG | 0.537212 | 6_2:-765410 | None:intergenic |
GCTTCTTGAGCACTATGTGC+AGG | 0.556886 | 6_2:-764637 | None:intergenic |
AAGTTGCAATCAACAATGGA+TGG | 0.566106 | 6_2:+764442 | None:intergenic |
GGGATACAGAGCAAGGTGGT+TGG | 0.588650 | 6_2:+765322 | Msa0903550:CDS |
GGTGAGGCAGATGCGTGCAA+TGG | 0.598157 | 6_2:+765300 | Msa0903550:CDS |
ACAATGGATGGAGGAACCAC+AGG | 0.607474 | 6_2:+764454 | None:intergenic |
ATCTGCATTAGTTTCACATG+CGG | 0.612322 | 6_2:-765462 | None:intergenic |
TGCAATGGGGATACAGAGCA+AGG | 0.629234 | 6_2:+765315 | Msa0903550:CDS |
GCCCATAATCAATGGACCCG+AGG | 0.655096 | 6_2:+764717 | Msa0903550:CDS |
TTGCAATCAACAATGGATGG+AGG | 0.668830 | 6_2:+764445 | None:intergenic |
GAGGAACCACAGGATATAAG+CGG | 0.671047 | 6_2:+764464 | Msa0903550:CDS |
TGAGGCAGATGCGTGCAATG+GGG | 0.781176 | 6_2:+765302 | Msa0903550:CDS |
AATGGGGATACAGAGCAAGG+TGG | 0.782718 | 6_2:+765318 | Msa0903550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATAAATTTTTGATACCT+CGG | - | chr6_2:764737-764756 | None:intergenic | 15.0% |
!!! | AATATATAAGTAATTTTGTC+CGG | - | chr6_2:764912-764931 | None:intergenic | 15.0% |
!! | ATTACTTATATATTAATCAC+TGG | + | chr6_2:764918-764937 | Msa0903550:intron | 15.0% |
!!! | TAAATAAATTTTTGATACCT+CGG | - | chr6_2:764737-764756 | None:intergenic | 15.0% |
!!! | AATATATAAGTAATTTTGTC+CGG | - | chr6_2:764912-764931 | None:intergenic | 15.0% |
!! | ATTACTTATATATTAATCAC+TGG | + | chr6_2:764918-764937 | Msa0903550:intron | 15.0% |
!!! | AAATAAATTTTTGATACCTC+GGG | - | chr6_2:764736-764755 | None:intergenic | 20.0% |
!!! | AAACTAGTTAGTTTAAAATG+TGG | - | chr6_2:764793-764812 | None:intergenic | 20.0% |
!!! | ATATATAAGTAATTTTGTCC+GGG | - | chr6_2:764911-764930 | None:intergenic | 20.0% |
!! | TAAAATTGACAACTCATTTA+TGG | - | chr6_2:765210-765229 | None:intergenic | 20.0% |
!!! | AAATAAATTTTTGATACCTC+GGG | - | chr6_2:764736-764755 | None:intergenic | 20.0% |
!!! | AAACTAGTTAGTTTAAAATG+TGG | - | chr6_2:764793-764812 | None:intergenic | 20.0% |
!!! | ATATATAAGTAATTTTGTCC+GGG | - | chr6_2:764911-764930 | None:intergenic | 20.0% |
!! | TAAAATTGACAACTCATTTA+TGG | - | chr6_2:765210-765229 | None:intergenic | 20.0% |
! | CAGTTAATCTCATATTTAGA+CGG | + | chr6_2:764839-764858 | Msa0903550:intron | 25.0% |
! | ACTTATATATTAATCACTGG+CGG | + | chr6_2:764921-764940 | Msa0903550:intron | 25.0% |
! | TAAGATGAATTCTTATCAAC+TGG | + | chr6_2:764991-765010 | Msa0903550:intron | 25.0% |
!!! | GGATCTATTTTGATCATATA+TGG | - | chr6_2:765048-765067 | None:intergenic | 25.0% |
!!! | TTCCTAATTACTTTTGTAGT+TGG | + | chr6_2:765279-765298 | Msa0903550:intron | 25.0% |
! | CAGTTAATCTCATATTTAGA+CGG | + | chr6_2:764839-764858 | Msa0903550:intron | 25.0% |
! | ACTTATATATTAATCACTGG+CGG | + | chr6_2:764921-764940 | Msa0903550:intron | 25.0% |
! | TAAGATGAATTCTTATCAAC+TGG | + | chr6_2:764991-765010 | Msa0903550:intron | 25.0% |
!!! | GGATCTATTTTGATCATATA+TGG | - | chr6_2:765048-765067 | None:intergenic | 25.0% |
!!! | TTCCTAATTACTTTTGTAGT+TGG | + | chr6_2:765279-765298 | Msa0903550:intron | 25.0% |
CATCATATGCTTGAATCAAT+AGG | + | chr6_2:764601-764620 | Msa0903550:CDS | 30.0% | |
!! | TTTGATTTGCCCATAATCAA+TGG | + | chr6_2:764709-764728 | Msa0903550:CDS | 30.0% |
TTAATCTCATATTTAGACGG+TGG | + | chr6_2:764842-764861 | Msa0903550:intron | 30.0% | |
TAATCTCATATTTAGACGGT+GGG | + | chr6_2:764843-764862 | Msa0903550:intron | 30.0% | |
!!! | TCAACTGGACTATTTTTTGT+TGG | + | chr6_2:765006-765025 | Msa0903550:intron | 30.0% |
ATCCTTTGTCATCAACTTTA+TGG | + | chr6_2:765064-765083 | Msa0903550:intron | 30.0% | |
!! | TACCATAAAGTTGATGACAA+AGG | - | chr6_2:765069-765088 | None:intergenic | 30.0% |
ATTTATGGACTTGGATTTGA+CGG | - | chr6_2:765195-765214 | None:intergenic | 30.0% | |
CACCAACTACAAAAGTAATT+AGG | - | chr6_2:765284-765303 | None:intergenic | 30.0% | |
!! | AATTACTTTTGTAGTTGGTG+AGG | + | chr6_2:765284-765303 | Msa0903550:intron | 30.0% |
GATCAAAATGTGCAAATGTT+TGG | + | chr6_2:765364-765383 | Msa0903550:CDS | 30.0% | |
CATCATATGCTTGAATCAAT+AGG | + | chr6_2:764601-764620 | Msa0903550:CDS | 30.0% | |
!! | TTTGATTTGCCCATAATCAA+TGG | + | chr6_2:764709-764728 | Msa0903550:CDS | 30.0% |
TTAATCTCATATTTAGACGG+TGG | + | chr6_2:764842-764861 | Msa0903550:intron | 30.0% | |
TAATCTCATATTTAGACGGT+GGG | + | chr6_2:764843-764862 | Msa0903550:intron | 30.0% | |
!!! | TCAACTGGACTATTTTTTGT+TGG | + | chr6_2:765006-765025 | Msa0903550:intron | 30.0% |
ATCCTTTGTCATCAACTTTA+TGG | + | chr6_2:765064-765083 | Msa0903550:intron | 30.0% | |
!! | TACCATAAAGTTGATGACAA+AGG | - | chr6_2:765069-765088 | None:intergenic | 30.0% |
ATTTATGGACTTGGATTTGA+CGG | - | chr6_2:765195-765214 | None:intergenic | 30.0% | |
CACCAACTACAAAAGTAATT+AGG | - | chr6_2:765284-765303 | None:intergenic | 30.0% | |
!! | AATTACTTTTGTAGTTGGTG+AGG | + | chr6_2:765284-765303 | Msa0903550:intron | 30.0% |
GATCAAAATGTGCAAATGTT+TGG | + | chr6_2:765364-765383 | Msa0903550:CDS | 30.0% | |
!!! | ATCCACATTTTTTTCTCCTC+TGG | - | chr6_2:764499-764518 | None:intergenic | 35.0% |
AGCAATGCATTCATTGGATA+TGG | - | chr6_2:764547-764566 | None:intergenic | 35.0% | |
TCTACTAGCAATGCATTCAT+TGG | - | chr6_2:764553-764572 | None:intergenic | 35.0% | |
ATGAATGCATTGCTAGTAGA+TGG | + | chr6_2:764553-764572 | Msa0903550:CDS | 35.0% | |
TCTCACGTATTTCTTTGTTC+TGG | - | chr6_2:764881-764900 | None:intergenic | 35.0% | |
TATCTCATAGCTGAACTATC+TGG | - | chr6_2:765101-765120 | None:intergenic | 35.0% | |
AATCAAACAACCTCACTTGA+TGG | + | chr6_2:765139-765158 | Msa0903550:intron | 35.0% | |
TGACAACTCATTTATGGACT+TGG | - | chr6_2:765204-765223 | None:intergenic | 35.0% | |
TGATGAACACAAAACTCTCT+CGG | - | chr6_2:765429-765448 | None:intergenic | 35.0% | |
!! | AGAGTTTTGTGTTCATCACT+GGG | + | chr6_2:765431-765450 | Msa0903550:CDS | 35.0% |
!!! | ATCCACATTTTTTTCTCCTC+TGG | - | chr6_2:764499-764518 | None:intergenic | 35.0% |
AGCAATGCATTCATTGGATA+TGG | - | chr6_2:764547-764566 | None:intergenic | 35.0% | |
TCTACTAGCAATGCATTCAT+TGG | - | chr6_2:764553-764572 | None:intergenic | 35.0% | |
ATGAATGCATTGCTAGTAGA+TGG | + | chr6_2:764553-764572 | Msa0903550:CDS | 35.0% | |
TCTCACGTATTTCTTTGTTC+TGG | - | chr6_2:764881-764900 | None:intergenic | 35.0% | |
TATCTCATAGCTGAACTATC+TGG | - | chr6_2:765101-765120 | None:intergenic | 35.0% | |
AATCAAACAACCTCACTTGA+TGG | + | chr6_2:765139-765158 | Msa0903550:intron | 35.0% | |
TGACAACTCATTTATGGACT+TGG | - | chr6_2:765204-765223 | None:intergenic | 35.0% | |
TGATGAACACAAAACTCTCT+CGG | - | chr6_2:765429-765448 | None:intergenic | 35.0% | |
!! | AGAGTTTTGTGTTCATCACT+GGG | + | chr6_2:765431-765450 | Msa0903550:CDS | 35.0% |
!! | TTTTTGCCGCTTATATCCTG+TGG | - | chr6_2:764473-764492 | None:intergenic | 40.0% |
AGCCAGAGGAGAAAAAAATG+TGG | + | chr6_2:764494-764513 | Msa0903550:CDS | 40.0% | |
! | GCGATGCAAATTTTGTTGAC+TGG | + | chr6_2:764658-764677 | Msa0903550:CDS | 40.0% |
ATATTTAGACGGTGGGTCTT+TGG | + | chr6_2:764850-764869 | Msa0903550:intron | 40.0% | |
TATTTAGACGGTGGGTCTTT+GGG | + | chr6_2:764851-764870 | Msa0903550:intron | 40.0% | |
GATGAACACAAAACTCTCTC+GGG | - | chr6_2:765428-765447 | None:intergenic | 40.0% | |
!! | GAGAGTTTTGTGTTCATCAC+TGG | + | chr6_2:765430-765449 | Msa0903550:CDS | 40.0% |
!! | TTTTTGCCGCTTATATCCTG+TGG | - | chr6_2:764473-764492 | None:intergenic | 40.0% |
AGCCAGAGGAGAAAAAAATG+TGG | + | chr6_2:764494-764513 | Msa0903550:CDS | 40.0% | |
! | GCGATGCAAATTTTGTTGAC+TGG | + | chr6_2:764658-764677 | Msa0903550:CDS | 40.0% |
ATATTTAGACGGTGGGTCTT+TGG | + | chr6_2:764850-764869 | Msa0903550:intron | 40.0% | |
TATTTAGACGGTGGGTCTTT+GGG | + | chr6_2:764851-764870 | Msa0903550:intron | 40.0% | |
GATGAACACAAAACTCTCTC+GGG | - | chr6_2:765428-765447 | None:intergenic | 40.0% | |
!! | GAGAGTTTTGTGTTCATCAC+TGG | + | chr6_2:765430-765449 | Msa0903550:CDS | 40.0% |
GAGGAACCACAGGATATAAG+CGG | + | chr6_2:764464-764483 | Msa0903550:CDS | 45.0% | |
TAAGCGGCAAAAAAAGCCAG+AGG | + | chr6_2:764480-764499 | Msa0903550:CDS | 45.0% | |
! | CATATGATGCTCTAAGCGTC+TGG | - | chr6_2:764590-764609 | None:intergenic | 45.0% |
! | ACCTCGGGTCCATTGATTAT+GGG | - | chr6_2:764721-764740 | None:intergenic | 45.0% |
! | TACCTCGGGTCCATTGATTA+TGG | - | chr6_2:764722-764741 | None:intergenic | 45.0% |
AATACGTGAGACTCAGATCC+CGG | + | chr6_2:764890-764909 | Msa0903550:intron | 45.0% | |
GTGAGTATGAAACCCATCGT+CGG | - | chr6_2:764957-764976 | None:intergenic | 45.0% | |
! | CAAGTTGACTCCATCAAGTG+AGG | - | chr6_2:765152-765171 | None:intergenic | 45.0% |
ACAAAACTCTCTCGGGTCAA+AGG | - | chr6_2:765421-765440 | None:intergenic | 45.0% | |
GAGGAACCACAGGATATAAG+CGG | + | chr6_2:764464-764483 | Msa0903550:CDS | 45.0% | |
TAAGCGGCAAAAAAAGCCAG+AGG | + | chr6_2:764480-764499 | Msa0903550:CDS | 45.0% | |
! | CATATGATGCTCTAAGCGTC+TGG | - | chr6_2:764590-764609 | None:intergenic | 45.0% |
! | ACCTCGGGTCCATTGATTAT+GGG | - | chr6_2:764721-764740 | None:intergenic | 45.0% |
! | TACCTCGGGTCCATTGATTA+TGG | - | chr6_2:764722-764741 | None:intergenic | 45.0% |
AATACGTGAGACTCAGATCC+CGG | + | chr6_2:764890-764909 | Msa0903550:intron | 45.0% | |
GTGAGTATGAAACCCATCGT+CGG | - | chr6_2:764957-764976 | None:intergenic | 45.0% | |
! | CAAGTTGACTCCATCAAGTG+AGG | - | chr6_2:765152-765171 | None:intergenic | 45.0% |
ACAAAACTCTCTCGGGTCAA+AGG | - | chr6_2:765421-765440 | None:intergenic | 45.0% | |
CACTATGTGCAGGCTCTGTT+CGG | - | chr6_2:764630-764649 | None:intergenic | 50.0% | |
GCTTCTTGAGCACTATGTGC+AGG | - | chr6_2:764640-764659 | None:intergenic | 50.0% | |
GGTATCCTCATACCGACGAT+GGG | + | chr6_2:764942-764961 | Msa0903550:intron | 50.0% | |
TGAAACCCATCGTCGGTATG+AGG | - | chr6_2:764950-764969 | None:intergenic | 50.0% | |
TGCAATGGGGATACAGAGCA+AGG | + | chr6_2:765315-765334 | Msa0903550:CDS | 50.0% | |
AATGGGGATACAGAGCAAGG+TGG | + | chr6_2:765318-765337 | Msa0903550:CDS | 50.0% | |
!! | TCTCTCGGGTCAAAGGTGTT+GGG | - | chr6_2:765414-765433 | None:intergenic | 50.0% |
CACTATGTGCAGGCTCTGTT+CGG | - | chr6_2:764630-764649 | None:intergenic | 50.0% | |
GCTTCTTGAGCACTATGTGC+AGG | - | chr6_2:764640-764659 | None:intergenic | 50.0% | |
GGTATCCTCATACCGACGAT+GGG | + | chr6_2:764942-764961 | Msa0903550:intron | 50.0% | |
TGAAACCCATCGTCGGTATG+AGG | - | chr6_2:764950-764969 | None:intergenic | 50.0% | |
TGCAATGGGGATACAGAGCA+AGG | + | chr6_2:765315-765334 | Msa0903550:CDS | 50.0% | |
AATGGGGATACAGAGCAAGG+TGG | + | chr6_2:765318-765337 | Msa0903550:CDS | 50.0% | |
!! | TCTCTCGGGTCAAAGGTGTT+GGG | - | chr6_2:765414-765433 | None:intergenic | 50.0% |
GCCCATAATCAATGGACCCG+AGG | + | chr6_2:764717-764736 | Msa0903550:CDS | 55.0% | |
CGGTATCCTCATACCGACGA+TGG | + | chr6_2:764941-764960 | Msa0903550:intron | 55.0% | |
GTGAGGCAGATGCGTGCAAT+GGG | + | chr6_2:765301-765320 | Msa0903550:CDS | 55.0% | |
TGAGGCAGATGCGTGCAATG+GGG | + | chr6_2:765302-765321 | Msa0903550:CDS | 55.0% | |
GGGATACAGAGCAAGGTGGT+TGG | + | chr6_2:765322-765341 | Msa0903550:CDS | 55.0% | |
!! | CTCTCGGGTCAAAGGTGTTG+GGG | - | chr6_2:765413-765432 | None:intergenic | 55.0% |
! | CTCTCTCGGGTCAAAGGTGT+TGG | - | chr6_2:765415-765434 | None:intergenic | 55.0% |
GCCCATAATCAATGGACCCG+AGG | + | chr6_2:764717-764736 | Msa0903550:CDS | 55.0% | |
CGGTATCCTCATACCGACGA+TGG | + | chr6_2:764941-764960 | Msa0903550:intron | 55.0% | |
GTGAGGCAGATGCGTGCAAT+GGG | + | chr6_2:765301-765320 | Msa0903550:CDS | 55.0% | |
TGAGGCAGATGCGTGCAATG+GGG | + | chr6_2:765302-765321 | Msa0903550:CDS | 55.0% | |
GGGATACAGAGCAAGGTGGT+TGG | + | chr6_2:765322-765341 | Msa0903550:CDS | 55.0% | |
!! | CTCTCGGGTCAAAGGTGTTG+GGG | - | chr6_2:765413-765432 | None:intergenic | 55.0% |
! | CTCTCTCGGGTCAAAGGTGT+TGG | - | chr6_2:765415-765434 | None:intergenic | 55.0% |
GGTGAGGCAGATGCGTGCAA+TGG | + | chr6_2:765300-765319 | Msa0903550:CDS | 60.0% | |
!! | GGTCAAAGGTGTTGGGGTGC+TGG | - | chr6_2:765407-765426 | None:intergenic | 60.0% |
GGTGAGGCAGATGCGTGCAA+TGG | + | chr6_2:765300-765319 | Msa0903550:CDS | 60.0% | |
!! | GGTCAAAGGTGTTGGGGTGC+TGG | - | chr6_2:765407-765426 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 764457 | 765471 | 764457 | ID=Msa0903550;Name=Msa0903550 |
chr6_2 | mRNA | 764457 | 765471 | 764457 | ID=Msa0903550-mRNA-1;Parent=Msa0903550;Name=Msa0903550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|151 |
chr6_2 | exon | 764457 | 764738 | 764457 | ID=Msa0903550-mRNA-1:exon:302;Parent=Msa0903550-mRNA-1 |
chr6_2 | exon | 765298 | 765471 | 765298 | ID=Msa0903550-mRNA-1:exon:303;Parent=Msa0903550-mRNA-1 |
chr6_2 | CDS | 764457 | 764738 | 764457 | ID=Msa0903550-mRNA-1:cds;Parent=Msa0903550-mRNA-1 |
chr6_2 | CDS | 765298 | 765471 | 765298 | ID=Msa0903550-mRNA-1:cds;Parent=Msa0903550-mRNA-1 |
Gene Sequence |
Protein sequence |