AlfalfaGEDB | Msa0903860

M. sativa cultivar zhongmu-4 / Msa0903860

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903860	QSD99662.1	93.642	346	19	3	1	344	1	345	0.0	622

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903860	sp\|Q9LSI7\|MYB35_ARATH	46.196	368	123	11	1	344	1	317	1.16e-83	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0903860	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903860	MtrunA17_Chr6g0452271	93.023	344	16	2	1	344	1	336	0.0	619
Msa0903860	MtrunA17_Chr3g0103281	66.423	137	46	0	1	137	1	137	6.90e-66	211
Msa0903860	MtrunA17_Chr5g0410961	49.756	205	92	3	1	198	1	201	3.55e-64	207
Msa0903860	MtrunA17_Chr4g0039971	49.206	189	85	2	1	182	2	186	1.49e-63	206
Msa0903860	MtrunA17_Chr1g0151941	60.897	156	56	4	1	154	1	153	7.59e-63	200
Msa0903860	MtrunA17_Chr6g0453471	66.406	128	43	0	1	128	1	128	1.18e-62	203
Msa0903860	MtrunA17_Chr3g0115821	55.195	154	66	1	1	151	1	154	3.80e-62	202
Msa0903860	MtrunA17_Chr4g0048511	62.857	140	50	2	1	139	1	139	4.53e-62	202
Msa0903860	MtrunA17_Chr7g0217741	62.406	133	50	0	1	133	1	133	5.92e-62	200
Msa0903860	MtrunA17_Chr2g0281071	65.116	129	44	1	1	128	1	129	2.46e-61	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903860	AT3G28470.1	46.196	368	123	11	1	344	1	317	1.18e-84	259
Msa0903860	AT5G56110.1	64.626	147	46	1	1	147	1	141	6.79e-67	213
Msa0903860	AT5G16770.4	52.542	177	83	1	1	177	1	176	1.30e-64	207
Msa0903860	AT5G16770.3	52.542	177	83	1	1	177	1	176	1.30e-64	207
Msa0903860	AT5G16770.1	52.542	177	83	1	1	177	1	176	3.50e-64	207
Msa0903860	AT5G16770.2	52.542	177	83	1	1	177	1	176	3.50e-64	207
Msa0903860	AT5G15310.4	50.259	193	86	4	1	184	1	192	3.81e-64	204
Msa0903860	AT5G15310.2	50.259	193	86	4	1	184	1	192	7.06e-64	206
Msa0903860	AT5G15310.1	50.259	193	86	4	1	184	1	192	7.31e-64	206
Msa0903860	AT3G02940.2	65.625	128	44	0	1	128	1	128	1.91e-63	204

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Find 50 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGTGGTTCAAGTGA+AGG	0.532114	6_2:-1293625	Msa0903860:CDS
AAACTATCATGCTTGAGATC+AGG	0.493104	6_2:+1295317	None:intergenic
AAAGAAGCATCCAAAATTTC+TGG	0.229497	6_2:+1293472	None:intergenic
AAATTAACTCTAACTTTGAA+TGG	0.399442	6_2:-1293804	Msa0903860:CDS
AAGAAAGAAGCTTATGAAAA+TGG	0.185126	6_2:-1294139	Msa0903860:CDS
AAGAGGTTTATGGACTCCTG+AGG	0.664726	6_2:-1295773	Msa0903860:CDS
AATGGTGATGATAAACAAGG+TGG	0.713993	6_2:-1293637	Msa0903860:CDS
AATTCTCTTGGTTTGTGAAT+TGG	0.359504	6_2:+1293938	None:intergenic
ACAATGATGAGCCTTTAGTG+TGG	0.648778	6_2:-1293768	Msa0903860:CDS
ACAATGATGTCAAGAATTAT+TGG	0.314255	6_2:-1294173	Msa0903860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAAACCAATGTGAAAAG+AGG	-	chr6_2:1293483-1293502	Msa0903860:CDS	30.0%
AAAACCATGTTCGTGAATAA+AGG	+	chr6_2:1293613-1293632	None:intergenic	30.0%
TGAAGAAGCAAATATGTACA+TGG	+	chr6_2:1294272-1294291	None:intergenic	30.0%
AGTTCGGTCTTAAATATAAG+AGG	+	chr6_2:1294678-1294697	None:intergenic	30.0%
TTCAACAATGTGACATACAA+AGG	-	chr6_2:1295544-1295563	Msa0903860:intron	30.0%
TCAACAATGTGACATACAAA+GGG	-	chr6_2:1295545-1295564	Msa0903860:intron	30.0%
GATAAAACCAATGTGAAAAG+AGG	-	chr6_2:1293483-1293502	Msa0903860:CDS	30.0%
AAAACCATGTTCGTGAATAA+AGG	+	chr6_2:1293613-1293632	None:intergenic	30.0%
TGAAGAAGCAAATATGTACA+TGG	+	chr6_2:1294272-1294291	None:intergenic	30.0%
AGTTCGGTCTTAAATATAAG+AGG	+	chr6_2:1294678-1294697	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	1293462	1295833	1293462	ID=Msa0903860;Name=Msa0903860
chr6_2	mRNA	1293462	1295833	1293462	ID=Msa0903860-mRNA-1;Parent=Msa0903860;Name=Msa0903860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|344
chr6_2	exon	1295701	1295833	1295701	ID=Msa0903860-mRNA-1:exon:536;Parent=Msa0903860-mRNA-1
chr6_2	exon	1295263	1295392	1295263	ID=Msa0903860-mRNA-1:exon:535;Parent=Msa0903860-mRNA-1
chr6_2	exon	1293462	1294233	1293462	ID=Msa0903860-mRNA-1:exon:534;Parent=Msa0903860-mRNA-1
chr6_2	CDS	1295701	1295833	1295701	ID=Msa0903860-mRNA-1:cds;Parent=Msa0903860-mRNA-1
chr6_2	CDS	1295263	1295392	1295263	ID=Msa0903860-mRNA-1:cds;Parent=Msa0903860-mRNA-1
chr6_2	CDS	1293462	1294233	1293462	ID=Msa0903860-mRNA-1:cds;Parent=Msa0903860-mRNA-1

Gene Sequence

>Msa0903860

ATGGGAAGGCCTCCTTGTTGTGATAAAACCAATGTGAAAAGAGGTTTATGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTAGCCAATCATGGAATTGGAAATTGGACAGCTGTTCCAAAGAAAGCAGGGTTGAATAGGTGTGGTAAGAGTTGCAGGCTAAGATATACAAATTATCTAAGACCTGATCTCAAGCATGATAGTTTTACACCTGAGGAAGAAGAGCTGATTATTACCCTTCATGGAGCTATAGGAAGCAGATGGTCTTGTATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTCAAGAATTATTGGAACACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTGATTTCTGACTTAGGAAACATTAGTAGCCTCACAACAACATCAAACTCTCAAAACCAAATGAATTTTGTCAATAACACCCCAATATTGGAACACACAAAAGATGAACAAGTTCAACCAATGCAAAATCAAGTTCAATATCACCAATTCACAAACCAAGAGAATTTCCAACAACATGTCTTAAGTGAAGTTGCATCTTCAAGTTCATCTTCGTCTTCTTCTAATCTCACTAGGCTAAGCTCGCCGATTTCGTACTCTTGCAACACTTCACAAGCTCAAATTAACTCTAACTTTGAATGGAGTGATTTTCTTCACAATGATGAGCCTTTAGTGTGGACAGAAATTCAACAAATTCAACAATGTGACATACAAAGGGTAATGTCATCATTGAGCCTCTCAGGTATAATGCAAAGTGAAGGTGAAATTTCCAATAATTTCAATAGTAATGGTGATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGAGGATGTTGCTTGTGTTGCAAGCAAAGAATGTCAAGTTGATAAGAAATGTGAAGCAAATTCATTTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAAGGACAGTGAGATAAGGGCAACATTTCCAGAAATTTTGGATGCTTCTTTTGATTATTAA

Protein sequence

>Msa0903860

MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTAVPKKAGLNRCGKSCRLRYTNYLRPDLKHDSFTPEEEELIITLHGAIGSRWSCIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVISDLGNISSLTTTSNSQNQMNFVNNTPILEHTKDEQVQPMQNQVQYHQFTNQENFQQHVLSEVASSSSSSSSSNLTRLSSPISYSCNTSQAQINSNFEWSDFLHNDEPLVWTEIQQIQQCDIQRVMSSLSLSGIMQSEGEISNNFNSNGDDKQGGSSEGFEDVACVASKECQVDKKCEANSFSGNSFVDGILDKDSEIRATFPEILDASFDY*