Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904270 | KAG1330954.1 | 52.607 | 211 | 75 | 7 | 60 | 261 | 12 | 206 | 6.16e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904270 | sp|Q9FY99|G6PD2_ARATH | 52.857 | 210 | 74 | 7 | 60 | 260 | 178 | 371 | 1.23e-51 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0904270 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904270 | MtrunA17_Chr7g0222441 | 52.133 | 211 | 75 | 6 | 60 | 260 | 176 | 370 | 2.66e-54 | 184 |
| Msa0904270 | MtrunA17_Chr8g0358431 | 85.870 | 92 | 13 | 0 | 169 | 260 | 56 | 147 | 2.64e-50 | 164 |
| Msa0904270 | MtrunA17_Chr8g0356771 | 86.667 | 90 | 12 | 0 | 171 | 260 | 72 | 161 | 8.16e-50 | 162 |
| Msa0904270 | MtrunA17_Chr8g0341321 | 51.442 | 208 | 76 | 7 | 62 | 260 | 166 | 357 | 1.99e-49 | 171 |
| Msa0904270 | MtrunA17_Chr7g0228611 | 52.899 | 138 | 56 | 1 | 124 | 261 | 173 | 301 | 1.19e-37 | 139 |
| Msa0904270 | MtrunA17_Chr6g0458971 | 51.449 | 138 | 58 | 1 | 123 | 260 | 175 | 303 | 1.37e-35 | 133 |
| Msa0904270 | MtrunA17_Chr7g0271531 | 45.062 | 162 | 70 | 4 | 99 | 260 | 247 | 389 | 8.37e-34 | 129 |
| Msa0904270 | MtrunA17_Chr6g0452611 | 87.500 | 64 | 7 | 1 | 1 | 64 | 1 | 63 | 6.66e-32 | 121 |
| Msa0904270 | MtrunA17_Chr6g0452551 | 82.812 | 64 | 11 | 0 | 1 | 64 | 1 | 64 | 2.44e-31 | 120 |
| Msa0904270 | MtrunA17_Chr6g0452531 | 84.375 | 64 | 10 | 0 | 1 | 64 | 1 | 64 | 4.06e-31 | 119 |
| Msa0904270 | MtrunA17_Chr6g0452601 | 85.714 | 63 | 9 | 0 | 1 | 63 | 1 | 63 | 6.41e-31 | 119 |
| Msa0904270 | MtrunA17_Chr7g0218161 | 79.661 | 59 | 12 | 0 | 1 | 59 | 1 | 59 | 1.40e-30 | 108 |
| Msa0904270 | MtrunA17_Chr6g0452501 | 82.812 | 64 | 11 | 0 | 1 | 64 | 1 | 64 | 2.80e-30 | 117 |
| Msa0904270 | MtrunA17_Chr6g0457371 | 80.952 | 63 | 12 | 0 | 1 | 63 | 1 | 63 | 8.31e-29 | 113 |
| Msa0904270 | MtrunA17_Chr6g0452561 | 76.923 | 65 | 13 | 1 | 1 | 63 | 1 | 65 | 6.41e-27 | 108 |
| Msa0904270 | MtrunA17_Chr6g0452591 | 70.769 | 65 | 16 | 2 | 1 | 63 | 32 | 95 | 2.56e-21 | 92.8 |
| Msa0904270 | MtrunA17_Chr6g0452161 | 68.254 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 4.66e-21 | 92.0 |
| Msa0904270 | MtrunA17_Chr3g0138001 | 36.913 | 149 | 62 | 6 | 1 | 125 | 2 | 142 | 3.17e-16 | 78.2 |
| Msa0904270 | MtrunA17_Chr3g0118601 | 51.667 | 60 | 29 | 0 | 6 | 65 | 21 | 80 | 1.84e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904270 | AT5G13110.1 | 52.857 | 210 | 74 | 7 | 60 | 260 | 178 | 371 | 1.25e-52 | 181 |
| Msa0904270 | AT1G24280.1 | 52.133 | 211 | 74 | 7 | 60 | 260 | 181 | 374 | 2.39e-52 | 180 |
| Msa0904270 | AT5G35790.1 | 51.442 | 208 | 76 | 7 | 62 | 260 | 161 | 352 | 4.31e-49 | 171 |
| Msa0904270 | AT5G40760.2 | 51.408 | 142 | 60 | 1 | 124 | 265 | 173 | 305 | 3.21e-37 | 138 |
| Msa0904270 | AT5G40760.1 | 51.408 | 142 | 60 | 1 | 124 | 265 | 173 | 305 | 3.21e-37 | 138 |
| Msa0904270 | AT3G27300.1 | 51.408 | 142 | 60 | 1 | 124 | 265 | 174 | 306 | 3.24e-37 | 138 |
| Msa0904270 | AT3G27300.3 | 51.408 | 142 | 60 | 1 | 124 | 265 | 174 | 306 | 3.24e-37 | 138 |
| Msa0904270 | AT3G27300.2 | 51.408 | 142 | 60 | 1 | 124 | 265 | 174 | 306 | 3.24e-37 | 138 |
| Msa0904270 | AT3G27300.4 | 51.408 | 142 | 60 | 1 | 124 | 265 | 245 | 377 | 6.26e-37 | 138 |
| Msa0904270 | AT3G27300.5 | 51.408 | 142 | 60 | 1 | 124 | 265 | 228 | 360 | 6.39e-37 | 137 |
| Msa0904270 | AT1G09420.2 | 57.843 | 102 | 39 | 2 | 161 | 261 | 316 | 414 | 1.77e-29 | 117 |
| Msa0904270 | AT1G09420.1 | 58.416 | 101 | 38 | 2 | 161 | 260 | 316 | 413 | 1.91e-29 | 117 |
| Msa0904270 | AT5G11290.2 | 52.542 | 59 | 27 | 1 | 5 | 63 | 14 | 71 | 7.01e-12 | 65.5 |
| Msa0904270 | AT4G31980.1 | 52.542 | 59 | 27 | 1 | 5 | 63 | 274 | 331 | 5.17e-11 | 63.2 |
Find 75 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTGATTACTTTGAATT+TGG | 0.131166 | 6_2:+1808911 | Msa0904270:CDS |
| GATTACTTTGAATTTGGATA+TGG | 0.198668 | 6_2:+1808917 | Msa0904270:CDS |
| TTGATATTCTCAGAAGATTT+TGG | 0.217136 | 6_2:+1810265 | Msa0904270:CDS |
| CTCTGGTGTGGTTCTTATAT+TGG | 0.220904 | 6_2:-1810879 | None:intergenic |
| TGTAGGTACTTTGACAATTA+TGG | 0.237604 | 6_2:+1810388 | Msa0904270:intron |
| AGCAATATGGTGAAAGAAAA+TGG | 0.245087 | 6_2:+1809651 | Msa0904270:CDS |
| TTGTTGTTTGATTGTGGTTT+TGG | 0.275624 | 6_2:+1809500 | Msa0904270:CDS |
| TGAGGTTATGAGATGGTTAT+TGG | 0.298650 | 6_2:+1809471 | Msa0904270:intron |
| TCCTCTACATCCAAACTAAC+AGG | 0.318158 | 6_2:-1810475 | None:intergenic |
| ATGGACTGCTGTGCTGGAAT+TGG | 0.352828 | 6_2:+1808854 | Msa0904270:CDS |
| GGGCAGCCGCGGCAAATGTC+GGG | 0.353128 | 6_2:-1810960 | None:intergenic |
| ATTACATCCTCGAGTTTAAT+CGG | 0.364307 | 6_2:-1810850 | None:intergenic |
| ATTCTGAAGCGTGTAGAAAA+AGG | 0.373678 | 6_2:+1809367 | Msa0904270:CDS |
| TCACACGAAGACAATGAATT+TGG | 0.374716 | 6_2:-1808942 | None:intergenic |
| CAAATAGCTGAGAAGTTAGA+AGG | 0.389483 | 6_2:+1809677 | Msa0904270:CDS |
| TATAGGATCGATCACTATCT+TGG | 0.396364 | 6_2:+1810151 | Msa0904270:intron |
| AATGGAAACCCCTGTTAGTT+TGG | 0.405110 | 6_2:+1810465 | Msa0904270:CDS |
| GGGCCAATGGAAACGACATT+GGG | 0.405405 | 6_2:-1808496 | None:intergenic |
| ATTACTTTGAATTTGGATAT+GGG | 0.418300 | 6_2:+1808918 | Msa0904270:CDS |
| CAAGATGTCATTCTCCTCCT+TGG | 0.421325 | 6_2:+1808363 | None:intergenic |
| GTCGGGGTTAAGTTGTCCTT+TGG | 0.421435 | 6_2:-1810943 | None:intergenic |
| CTGTTACTTGACAGGGATGT+TGG | 0.431891 | 6_2:+1809325 | Msa0904270:intron |
| AGAAATGAAAAGGTCTCATA+TGG | 0.448571 | 6_2:+1810502 | Msa0904270:CDS |
| AGCTGAGAAGTTAGAAGGAA+GGG | 0.452156 | 6_2:+1809682 | Msa0904270:CDS |
| TGGATATGCAACACCTCCTC+TGG | 0.463674 | 6_2:-1810896 | None:intergenic |
| GATGTCATTCTCCTCCTTGG+TGG | 0.466972 | 6_2:+1808366 | None:intergenic |
| GCAATATGGTGAAAGAAAAT+GGG | 0.474578 | 6_2:+1809652 | Msa0904270:CDS |
| ATGATTAAAGGAAACTGATA+AGG | 0.479594 | 6_2:+1809621 | Msa0904270:intron |
| AGGGGTTTCCATTGCAAAGA+GGG | 0.484242 | 6_2:-1810455 | None:intergenic |
| CCCTGTTAGTTTGGATGTAG+AGG | 0.489596 | 6_2:+1810474 | Msa0904270:CDS |
| ATAAGGTTGGTGAAGCAATA+TGG | 0.490665 | 6_2:+1809638 | Msa0904270:CDS |
| CTTCATAGATAATGCAAGAT+GGG | 0.490793 | 6_2:+1810984 | Msa0904270:three_prime_UTR |
| AGAGGACATTAGAAATGAAA+AGG | 0.504615 | 6_2:+1810492 | Msa0904270:CDS |
| CGATGACTGTTGCATCTACA+AGG | 0.509976 | 6_2:+1808432 | Msa0904270:CDS |
| TGGGCAGCCGCGGCAAATGT+CGG | 0.513282 | 6_2:-1810961 | None:intergenic |
| TAGATAATGCAAGATGGGAT+GGG | 0.518772 | 6_2:+1810989 | Msa0904270:three_prime_UTR |
| AATACTAGCCCTCTTTGCAA+TGG | 0.520791 | 6_2:+1810447 | Msa0904270:CDS |
| TCCATTGGCCCCTTTCACCA+CGG | 0.520969 | 6_2:+1808508 | Msa0904270:CDS |
| ATCTATGAAGTGGGCAGCCG+CGG | 0.523740 | 6_2:-1810971 | None:intergenic |
| GGGGCCAATGGAAACGACAT+TGG | 0.525891 | 6_2:-1808497 | None:intergenic |
| CTATCTTGGAAAAGAGCTTG+TGG | 0.529498 | 6_2:+1810165 | Msa0904270:CDS |
| TCCTTGGTGGATGATATCAA+TGG | 0.531036 | 6_2:+1808379 | Msa0904270:CDS |
| TTAAAGGAAACTGATAAGGT+TGG | 0.535969 | 6_2:+1809625 | Msa0904270:intron |
| TAGCTGAGAAGTTAGAAGGA+AGG | 0.540309 | 6_2:+1809681 | Msa0904270:CDS |
| ATCTTGCATTATCTATGAAG+TGG | 0.550073 | 6_2:-1810981 | None:intergenic |
| ATAGATAATGCAAGATGGGA+TGG | 0.550173 | 6_2:+1810988 | Msa0904270:three_prime_UTR |
| TTGGTACTGAAGGACGTGGC+AGG | 0.552068 | 6_2:+1810284 | Msa0904270:CDS |
| CTTGTAGATGCAACAGTCAT+CGG | 0.553372 | 6_2:-1808431 | None:intergenic |
| GAGAAGTTAGAAGGAAGGGT+TGG | 0.557009 | 6_2:+1809686 | Msa0904270:CDS |
| TTGTGTTTGCGAATATCAGA+GGG | 0.569125 | 6_2:-1808457 | None:intergenic |
| ATGCAACAGTCATCGGTTGA+AGG | 0.570657 | 6_2:-1808424 | None:intergenic |
| ATGCAACACCTCCTCTGGTG+TGG | 0.571539 | 6_2:-1810891 | None:intergenic |
| GTTGTGTTTGCGAATATCAG+AGG | 0.574015 | 6_2:-1808458 | None:intergenic |
| ACCGTGGTGAAAGGGGCCAA+TGG | 0.584020 | 6_2:-1808509 | None:intergenic |
| ACTTCATAGATAATGCAAGA+TGG | 0.584523 | 6_2:+1810983 | Msa0904270:three_prime_UTR |
| CCTCTACATCCAAACTAACA+GGG | 0.593680 | 6_2:-1810474 | None:intergenic |
| CCTTGGTGGATGATATCAAT+GGG | 0.598535 | 6_2:+1808380 | Msa0904270:CDS |
| AGATAATGCAAGATGGGATG+GGG | 0.599941 | 6_2:+1810990 | Msa0904270:three_prime_UTR |
| GGCCAATGGAAACGACATTG+GGG | 0.603653 | 6_2:-1808495 | None:intergenic |
| TGATGACAAAACTGTACCAA+AGG | 0.605343 | 6_2:+1810927 | Msa0904270:three_prime_UTR |
| CAGGGGTTTCCATTGCAAAG+AGG | 0.613005 | 6_2:-1810456 | None:intergenic |
| GGCAGCCGCGGCAAATGTCG+GGG | 0.614161 | 6_2:-1810959 | None:intergenic |
| CAACAGTCATCGGTTGAAGG+TGG | 0.616570 | 6_2:-1808421 | None:intergenic |
| TCTTGCATTATCTATGAAGT+GGG | 0.621537 | 6_2:-1810980 | None:intergenic |
| TATAAGAACCACACCAGAGG+AGG | 0.636996 | 6_2:+1810883 | Msa0904270:three_prime_UTR |
| TATGAGACCGATTAAACTCG+AGG | 0.649881 | 6_2:+1810843 | Msa0904270:exon |
| CTCTACATCCAAACTAACAG+GGG | 0.664372 | 6_2:-1810473 | None:intergenic |
| CCCATTGATATCATCCACCA+AGG | 0.666496 | 6_2:-1808380 | None:intergenic |
| CTTAACCCCGACATTTGCCG+CGG | 0.674064 | 6_2:+1810954 | Msa0904270:three_prime_UTR |
| CAATATAAGAACCACACCAG+AGG | 0.676256 | 6_2:+1810880 | Msa0904270:three_prime_UTR |
| ATGTATTGCCACGACCACAA+AGG | 0.680638 | 6_2:-1810229 | None:intergenic |
| GCCAATGGAAACGACATTGG+GGG | 0.693624 | 6_2:-1808494 | None:intergenic |
| ATTGATATCATCCACCAAGG+AGG | 0.716430 | 6_2:-1808377 | None:intergenic |
| CAATGGGATGCTTAACACAG+CGG | 0.742257 | 6_2:+1808396 | Msa0904270:CDS |
| TGTGTTTGCGAATATCAGAG+GGG | 0.751739 | 6_2:-1808456 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAAAAGTAACA+GGG | - | chr6_2:1809290-1809309 | None:intergenic | 10.0% |
| !! | AAATAAAAAAAAAAAGTAAC+AGG | - | chr6_2:1809291-1809310 | None:intergenic | 10.0% |
| !! | TAAAATGGAAAATATTATAT+AGG | + | chr6_2:1810134-1810153 | Msa0904270:intron | 10.0% |
| !! | NNNNNNNNNAAAAATGAGCT+AGG | + | chr6_2:1808660-1808679 | Msa0904270:intron | 15.0% |
| !!! | ATTGATTTTGAATTTTTAGA+CGG | + | chr6_2:1808737-1808756 | Msa0904270:intron | 15.0% |
| !!! | ATTTAAAACAGATGAATTAA+AGG | - | chr6_2:1810763-1810782 | None:intergenic | 15.0% |
| !!! | TTGATTTTGAATTTTTAGAC+GGG | + | chr6_2:1808738-1808757 | Msa0904270:intron | 20.0% |
| !! | GAAATTGATTACTTTGAATT+TGG | + | chr6_2:1808911-1808930 | Msa0904270:CDS | 20.0% |
| !! | ATTACTTTGAATTTGGATAT+GGG | + | chr6_2:1808918-1808937 | Msa0904270:CDS | 20.0% |
| !!! | ATCTAAGATTTGATATGTTA+TGG | + | chr6_2:1809206-1809225 | Msa0904270:intron | 20.0% |
| !!! | TCAAGAAAATCATTCTTTTA+AGG | - | chr6_2:1809424-1809443 | None:intergenic | 20.0% |
| !!! | AATGATTTTCTTGATTACTA+AGG | + | chr6_2:1809430-1809449 | Msa0904270:intron | 20.0% |
| !! | TTATTTGGTATGATGATTAA+AGG | + | chr6_2:1809609-1809628 | Msa0904270:intron | 20.0% |
| !!! | TCTATTTTCATAAGCTATAT+TGG | + | chr6_2:1809942-1809961 | Msa0904270:intron | 20.0% |
| !!! | GTAAAGTGCTTTATTTAAAA+TGG | + | chr6_2:1810119-1810138 | Msa0904270:intron | 20.0% |
| !! | CAAAAATTAGATTTGAGAAT+CGG | - | chr6_2:1810207-1810226 | None:intergenic | 20.0% |
| !!! | CACTTTTTATGATCTTAAAA+TGG | + | chr6_2:1810333-1810352 | Msa0904270:intron | 20.0% |
| !!! | CATATGGTTACTTTTTTTAT+AGG | + | chr6_2:1810518-1810537 | Msa0904270:intron | 20.0% |
| !!! | TTTCTACTTATATTTAAGGT+CGG | - | chr6_2:1810574-1810593 | None:intergenic | 20.0% |
| !! | AACCTTTCTACTTATATTTA+AGG | - | chr6_2:1810578-1810597 | None:intergenic | 20.0% |
| ! | CATATGAATGATTCAATCAT+AGG | + | chr6_2:1808827-1808846 | Msa0904270:intron | 25.0% |
| !! | TGATTCAATCATAGGTTTTA+TGG | + | chr6_2:1808835-1808854 | Msa0904270:intron | 25.0% |
| ! | GATTACTTTGAATTTGGATA+TGG | + | chr6_2:1808917-1808936 | Msa0904270:CDS | 25.0% |
| ! | CTTCAATTTATATGTCTTTG+TGG | + | chr6_2:1809004-1809023 | Msa0904270:intron | 25.0% |
| ! | ATTGAGTGAATTATATGTTC+AGG | + | chr6_2:1809087-1809106 | Msa0904270:intron | 25.0% |
| !! | AACCTTTTTATTCACTATGT+TGG | - | chr6_2:1809175-1809194 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTGTTTGATTG+TGG | + | chr6_2:1809494-1809513 | Msa0904270:CDS | 25.0% |
| ! | ATGATTAAAGGAAACTGATA+AGG | + | chr6_2:1809621-1809640 | Msa0904270:intron | 25.0% |
| ! | ACTTATATGATAAGTGTGAA+TGG | - | chr6_2:1809855-1809874 | None:intergenic | 25.0% |
| !! | ATCTAATTTTTGAACCTTTG+TGG | + | chr6_2:1810215-1810234 | Msa0904270:CDS | 25.0% |
| !! | TTGATATTCTCAGAAGATTT+TGG | + | chr6_2:1810265-1810284 | Msa0904270:CDS | 25.0% |
| ! | GACCTTAAATATAAGTAGAA+AGG | + | chr6_2:1810573-1810592 | Msa0904270:intron | 25.0% |
| !! | ACAAATACATGTACCTTTTT+CGG | + | chr6_2:1810610-1810629 | Msa0904270:intron | 25.0% |
| !!! | ACCTTTTTCGGTTAAATATA+AGG | + | chr6_2:1810622-1810641 | Msa0904270:intron | 25.0% |
| ! | ACCTTATATTTAACCGAAAA+AGG | - | chr6_2:1810626-1810645 | None:intergenic | 25.0% |
| !! | TTTTCGGTTAAATATAAGGT+CGG | + | chr6_2:1810626-1810645 | Msa0904270:intron | 25.0% |
| ! | ACTTTCTTCTCAAAATCATT+TGG | + | chr6_2:1810686-1810705 | Msa0904270:intron | 25.0% |
| ! | CTTTCTTCTCAAAATCATTT+GGG | + | chr6_2:1810687-1810706 | Msa0904270:intron | 25.0% |
| !! | TTTATTGCAGCAGTTGATAA+AGG | + | chr6_2:1809133-1809152 | Msa0904270:intron | 30.0% |
| TGCCAACATAGTGAATAAAA+AGG | + | chr6_2:1809170-1809189 | Msa0904270:intron | 30.0% | |
| !! | AATGTTTTCTGTTACTTGAC+AGG | + | chr6_2:1809317-1809336 | Msa0904270:intron | 30.0% |
| !! | ATGTTTTCTGTTACTTGACA+GGG | + | chr6_2:1809318-1809337 | Msa0904270:intron | 30.0% |
| !!! | TTGTTGTTTGATTGTGGTTT+TGG | + | chr6_2:1809500-1809519 | Msa0904270:CDS | 30.0% |
| TTAAAGGAAACTGATAAGGT+TGG | + | chr6_2:1809625-1809644 | Msa0904270:intron | 30.0% | |
| AGCAATATGGTGAAAGAAAA+TGG | + | chr6_2:1809651-1809670 | Msa0904270:CDS | 30.0% | |
| GCAATATGGTGAAAGAAAAT+GGG | + | chr6_2:1809652-1809671 | Msa0904270:CDS | 30.0% | |
| !! | AACAATCCTAGAAGTGTTTA+TGG | + | chr6_2:1810033-1810052 | Msa0904270:intron | 30.0% |
| TAATTAGACCATGTTTGGAT+TGG | - | chr6_2:1810080-1810099 | None:intergenic | 30.0% | |
| ACAGATAATTAGACCATGTT+TGG | - | chr6_2:1810085-1810104 | None:intergenic | 30.0% | |
| ! | AAAAAGTGTAAATGCTGCAA+AGG | - | chr6_2:1810321-1810340 | None:intergenic | 30.0% |
| TGTAGGTACTTTGACAATTA+TGG | + | chr6_2:1810388-1810407 | Msa0904270:intron | 30.0% | |
| AGAGGACATTAGAAATGAAA+AGG | + | chr6_2:1810492-1810511 | Msa0904270:CDS | 30.0% | |
| AGAAATGAAAAGGTCTCATA+TGG | + | chr6_2:1810502-1810521 | Msa0904270:CDS | 30.0% | |
| ! | TACTTATATTTAAGGTCGGA+GGG | - | chr6_2:1810570-1810589 | None:intergenic | 30.0% |
| CATGACTTTCAATTGCTTAA+TGG | + | chr6_2:1810796-1810815 | Msa0904270:intron | 30.0% | |
| ATTACATCCTCGAGTTTAAT+CGG | - | chr6_2:1810853-1810872 | None:intergenic | 30.0% | |
| ! | AAACTCGAGGATGTAATTTT+AGG | + | chr6_2:1810856-1810875 | Msa0904270:exon | 30.0% |
| !! | TACAGTTTTGTCATCAATGT+AGG | - | chr6_2:1810923-1810942 | None:intergenic | 30.0% |
| TCTTGCATTATCTATGAAGT+GGG | - | chr6_2:1810983-1811002 | None:intergenic | 30.0% | |
| ATCTTGCATTATCTATGAAG+TGG | - | chr6_2:1810984-1811003 | None:intergenic | 30.0% | |
| ACTTCATAGATAATGCAAGA+TGG | + | chr6_2:1810983-1811002 | Msa0904270:three_prime_UTR | 30.0% | |
| CTTCATAGATAATGCAAGAT+GGG | + | chr6_2:1810984-1811003 | Msa0904270:three_prime_UTR | 30.0% | |
| TTGTGTTTGCGAATATCAGA+GGG | - | chr6_2:1808460-1808479 | None:intergenic | 35.0% | |
| !!! | ACTTTCCATGTTTTGGAGTT+GGG | - | chr6_2:1808539-1808558 | None:intergenic | 35.0% |
| ! | GTTTCTGACTTTCCATGTTT+TGG | - | chr6_2:1808546-1808565 | None:intergenic | 35.0% |
| ATAACTGCAACTTATGCAAC+TGG | - | chr6_2:1808765-1808784 | None:intergenic | 35.0% | |
| CATAAGTTGCAGTTATAAGC+TGG | + | chr6_2:1808769-1808788 | Msa0904270:intron | 35.0% | |
| TCACACGAAGACAATGAATT+TGG | - | chr6_2:1808945-1808964 | None:intergenic | 35.0% | |
| ATAAAAGAAGCTTGCAGTTC+TGG | - | chr6_2:1809118-1809137 | None:intergenic | 35.0% | |
| GTAACAGGGAACATATCATT+AGG | - | chr6_2:1809276-1809295 | None:intergenic | 35.0% | |
| !! | ATTCTGAAGCGTGTAGAAAA+AGG | + | chr6_2:1809367-1809386 | Msa0904270:CDS | 35.0% |
| ACTAAGGTAGCAGTTTATGT+TGG | + | chr6_2:1809446-1809465 | Msa0904270:intron | 35.0% | |
| !! | TAGCAGTTTATGTTGGTTTG+AGG | + | chr6_2:1809453-1809472 | Msa0904270:intron | 35.0% |
| TGAGGTTATGAGATGGTTAT+TGG | + | chr6_2:1809471-1809490 | Msa0904270:intron | 35.0% | |
| !! | ATAAGGTTGGTGAAGCAATA+TGG | + | chr6_2:1809638-1809657 | Msa0904270:CDS | 35.0% |
| CAAATAGCTGAGAAGTTAGA+AGG | + | chr6_2:1809677-1809696 | Msa0904270:CDS | 35.0% | |
| ! | TGACTGAGGATCAAATTTTC+AGG | + | chr6_2:1809782-1809801 | Msa0904270:intron | 35.0% |
| AACTACACTTTGACTGTGTT+TGG | + | chr6_2:1809811-1809830 | Msa0904270:intron | 35.0% | |
| !! | ACACTTCTAGGATTGTTTGA+AGG | - | chr6_2:1810030-1810049 | None:intergenic | 35.0% |
| CAAACAATCCAATCCAAACA+TGG | + | chr6_2:1810069-1810088 | Msa0904270:intron | 35.0% | |
| TATAGGATCGATCACTATCT+TGG | + | chr6_2:1810151-1810170 | Msa0904270:intron | 35.0% | |
| !! | TCAGAAGATTTTGGTACTGA+AGG | + | chr6_2:1810274-1810293 | Msa0904270:CDS | 35.0% |
| TTCATATCTGTTCCATGTGT+AGG | + | chr6_2:1810371-1810390 | Msa0904270:intron | 35.0% | |
| ! | ATTGTCAAAGTACCTACACA+TGG | - | chr6_2:1810386-1810405 | None:intergenic | 35.0% |
| ! | CTACTTATATTTAAGGTCGG+AGG | - | chr6_2:1810571-1810590 | None:intergenic | 35.0% |
| !!! | AAAGTCCAGGTTTTAAACTC+TGG | - | chr6_2:1810671-1810690 | None:intergenic | 35.0% |
| !! | TGATTTTGAGAAGAAAGTCC+AGG | - | chr6_2:1810684-1810703 | None:intergenic | 35.0% |
| TCTTCTCAAAATCATTTGGG+TGG | + | chr6_2:1810690-1810709 | Msa0904270:intron | 35.0% | |
| ! | TCAATTGCTTAATGGATGTC+AGG | + | chr6_2:1810804-1810823 | Msa0904270:intron | 35.0% |
| TGATGACAAAACTGTACCAA+AGG | + | chr6_2:1810927-1810946 | Msa0904270:three_prime_UTR | 35.0% | |
| ATAGATAATGCAAGATGGGA+TGG | + | chr6_2:1810988-1811007 | Msa0904270:three_prime_UTR | 35.0% | |
| TAGATAATGCAAGATGGGAT+GGG | + | chr6_2:1810989-1811008 | Msa0904270:three_prime_UTR | 35.0% | |
| !!! | TACCTTTTTTGATGAAGGCT+GGG | + | chr6_2:1811013-1811032 | Msa0904270:three_prime_UTR | 35.0% |
| ATTGATATCATCCACCAAGG+AGG | - | chr6_2:1808380-1808399 | None:intergenic | 40.0% | |
| ! | TCCTTGGTGGATGATATCAA+TGG | + | chr6_2:1808379-1808398 | Msa0904270:CDS | 40.0% |
| ! | CCTTGGTGGATGATATCAAT+GGG | + | chr6_2:1808380-1808399 | Msa0904270:CDS | 40.0% |
| CTTGTAGATGCAACAGTCAT+CGG | - | chr6_2:1808434-1808453 | None:intergenic | 40.0% | |
| TGTGTTTGCGAATATCAGAG+GGG | - | chr6_2:1808459-1808478 | None:intergenic | 40.0% | |
| GTTGTGTTTGCGAATATCAG+AGG | - | chr6_2:1808461-1808480 | None:intergenic | 40.0% | |
| !!! | TTTCCATGTTTTGGAGTTGG+GGG | - | chr6_2:1808537-1808556 | None:intergenic | 40.0% |
| !!! | CTTTCCATGTTTTGGAGTTG+GGG | - | chr6_2:1808538-1808557 | None:intergenic | 40.0% |
| !!! | GACTTTCCATGTTTTGGAGT+TGG | - | chr6_2:1808540-1808559 | None:intergenic | 40.0% |
| CATTGTCTTCGTGTGAGTAT+TGG | + | chr6_2:1808949-1808968 | Msa0904270:intron | 40.0% | |
| TGAAGCGTGTAGAAAAAGGT+TGG | + | chr6_2:1809371-1809390 | Msa0904270:CDS | 40.0% | |
| GAAGCGTGTAGAAAAAGGTT+GGG | + | chr6_2:1809372-1809391 | Msa0904270:CDS | 40.0% | |
| AAGCGTGTAGAAAAAGGTTG+GGG | + | chr6_2:1809373-1809392 | Msa0904270:CDS | 40.0% | |
| !! | GTTGGTTTGAGGTTATGAGA+TGG | + | chr6_2:1809464-1809483 | Msa0904270:intron | 40.0% |
| TAGCTGAGAAGTTAGAAGGA+AGG | + | chr6_2:1809681-1809700 | Msa0904270:CDS | 40.0% | |
| AGCTGAGAAGTTAGAAGGAA+GGG | + | chr6_2:1809682-1809701 | Msa0904270:CDS | 40.0% | |
| TGATCTTGTTAAAGCAGCTG+AGG | - | chr6_2:1809749-1809768 | None:intergenic | 40.0% | |
| ATTCAAGCAGTATCTGACTG+AGG | + | chr6_2:1809768-1809787 | Msa0904270:intron | 40.0% | |
| CTATCTTGGAAAAGAGCTTG+TGG | + | chr6_2:1810165-1810184 | Msa0904270:CDS | 40.0% | |
| ! | TTTTTGAACCTTTGTGGTCG+TGG | + | chr6_2:1810221-1810240 | Msa0904270:CDS | 40.0% |
| AATACTAGCCCTCTTTGCAA+TGG | + | chr6_2:1810447-1810466 | Msa0904270:CDS | 40.0% | |
| AATGGAAACCCCTGTTAGTT+TGG | + | chr6_2:1810465-1810484 | Msa0904270:CDS | 40.0% | |
| CTCTACATCCAAACTAACAG+GGG | - | chr6_2:1810476-1810495 | None:intergenic | 40.0% | |
| CCTCTACATCCAAACTAACA+GGG | - | chr6_2:1810477-1810496 | None:intergenic | 40.0% | |
| TCCTCTACATCCAAACTAAC+AGG | - | chr6_2:1810478-1810497 | None:intergenic | 40.0% | |
| TCGGTTAAATATAAGGTCGG+AGG | + | chr6_2:1810629-1810648 | Msa0904270:intron | 40.0% | |
| ! | AGAAGCCAGAGTTTAAAACC+TGG | + | chr6_2:1810663-1810682 | Msa0904270:intron | 40.0% |
| TATGAGACCGATTAAACTCG+AGG | + | chr6_2:1810843-1810862 | Msa0904270:exon | 40.0% | |
| CTCTGGTGTGGTTCTTATAT+TGG | - | chr6_2:1810882-1810901 | None:intergenic | 40.0% | |
| CAATATAAGAACCACACCAG+AGG | + | chr6_2:1810880-1810899 | Msa0904270:three_prime_UTR | 40.0% | |
| ! | GTTTTGTCATCAATGTAGGC+TGG | - | chr6_2:1810919-1810938 | None:intergenic | 40.0% |
| AGATAATGCAAGATGGGATG+GGG | + | chr6_2:1810990-1811009 | Msa0904270:three_prime_UTR | 40.0% | |
| !!! | TGGGGTACCTTTTTTGATGA+AGG | + | chr6_2:1811008-1811027 | Msa0904270:three_prime_UTR | 40.0% |
| !!! | GTACCTTTTTTGATGAAGGC+TGG | + | chr6_2:1811012-1811031 | Msa0904270:three_prime_UTR | 40.0% |
| TTCCCAGCCTTCATCAAAAA+AGG | - | chr6_2:1811018-1811037 | None:intergenic | 40.0% | |
| CCCATTGATATCATCCACCA+AGG | - | chr6_2:1808383-1808402 | None:intergenic | 45.0% | |
| CAATGGGATGCTTAACACAG+CGG | + | chr6_2:1808396-1808415 | Msa0904270:CDS | 45.0% | |
| ! | ATGCAACAGTCATCGGTTGA+AGG | - | chr6_2:1808427-1808446 | None:intergenic | 45.0% |
| CGATGACTGTTGCATCTACA+AGG | + | chr6_2:1808432-1808451 | Msa0904270:CDS | 45.0% | |
| GCAGAAAATAGCTTCAGTGC+AGG | + | chr6_2:1808700-1808719 | Msa0904270:intron | 45.0% | |
| ! | AAAGAAGCTTGCAGTTCTGG+AGG | - | chr6_2:1809115-1809134 | None:intergenic | 45.0% |
| ! | CTGTTACTTGACAGGGATGT+TGG | + | chr6_2:1809325-1809344 | Msa0904270:intron | 45.0% |
| GTAGAAAAAGGTTGGGGTCA+AGG | + | chr6_2:1809379-1809398 | Msa0904270:CDS | 45.0% | |
| GAGAAGTTAGAAGGAAGGGT+TGG | + | chr6_2:1809686-1809705 | Msa0904270:CDS | 45.0% | |
| GGATTGTTTGAAGGAGCTCA+TGG | - | chr6_2:1810021-1810040 | None:intergenic | 45.0% | |
| CCACTGCCATAAACACTTCT+AGG | - | chr6_2:1810042-1810061 | None:intergenic | 45.0% | |
| !! | CCTAGAAGTGTTTATGGCAG+TGG | + | chr6_2:1810039-1810058 | Msa0904270:intron | 45.0% |
| ATGTATTGCCACGACCACAA+AGG | - | chr6_2:1810232-1810251 | None:intergenic | 45.0% | |
| !! | GATTTTGGTACTGAAGGACG+TGG | + | chr6_2:1810280-1810299 | Msa0904270:CDS | 45.0% |
| AGGGGTTTCCATTGCAAAGA+GGG | - | chr6_2:1810458-1810477 | None:intergenic | 45.0% | |
| ! | CCCTGTTAGTTTGGATGTAG+AGG | + | chr6_2:1810474-1810493 | Msa0904270:CDS | 45.0% |
| TCCATAACCATGAGTCTCTG+AGG | - | chr6_2:1810740-1810759 | None:intergenic | 45.0% | |
| ! | GCTTAATGGATGTCAGGTCA+AGG | + | chr6_2:1810810-1810829 | Msa0904270:intron | 45.0% |
| TATAAGAACCACACCAGAGG+AGG | + | chr6_2:1810883-1810902 | Msa0904270:three_prime_UTR | 45.0% | |
| !!! | TTTTATTAATATGTTTTATT+TGG | + | chr6_2:1809594-1809613 | Msa0904270:intron | 5.0% |
| ! | CAACAGTCATCGGTTGAAGG+TGG | - | chr6_2:1808424-1808443 | None:intergenic | 50.0% |
| ! | ACCCCCAATGTCGTTTCCAT+TGG | + | chr6_2:1808493-1808512 | Msa0904270:CDS | 50.0% |
| GCCAATGGAAACGACATTGG+GGG | - | chr6_2:1808497-1808516 | None:intergenic | 50.0% | |
| GGCCAATGGAAACGACATTG+GGG | - | chr6_2:1808498-1808517 | None:intergenic | 50.0% | |
| GGGCCAATGGAAACGACATT+GGG | - | chr6_2:1808499-1808518 | None:intergenic | 50.0% | |
| TCACCCCCAACTCCAAAACA+TGG | + | chr6_2:1808531-1808550 | Msa0904270:CDS | 50.0% | |
| !! | GGTTTTATGGACTGCTGTGC+TGG | + | chr6_2:1808848-1808867 | Msa0904270:intron | 50.0% |
| ! | ATGGACTGCTGTGCTGGAAT+TGG | + | chr6_2:1808854-1808873 | Msa0904270:CDS | 50.0% |
| CAGGGGTTTCCATTGCAAAG+AGG | - | chr6_2:1810459-1810478 | None:intergenic | 50.0% | |
| GCCTCAGAGACTCATGGTTA+TGG | + | chr6_2:1810736-1810755 | Msa0904270:intron | 50.0% | |
| TGGATATGCAACACCTCCTC+TGG | - | chr6_2:1810899-1810918 | None:intergenic | 50.0% | |
| ! | GTCGGGGTTAAGTTGTCCTT+TGG | - | chr6_2:1810946-1810965 | None:intergenic | 50.0% |
| GGGGCCAATGGAAACGACAT+TGG | - | chr6_2:1808500-1808519 | None:intergenic | 55.0% | |
| TCCATTGGCCCCTTTCACCA+CGG | + | chr6_2:1808508-1808527 | Msa0904270:CDS | 55.0% | |
| GCAAGCAGTGTAGAGAGCGA+TGG | + | chr6_2:1809708-1809727 | Msa0904270:intron | 55.0% | |
| ! | TTGGTACTGAAGGACGTGGC+AGG | + | chr6_2:1810284-1810303 | Msa0904270:CDS | 55.0% |
| AGCTACGCCTCAGAGACTCA+TGG | + | chr6_2:1810730-1810749 | Msa0904270:intron | 55.0% | |
| ATGCAACACCTCCTCTGGTG+TGG | - | chr6_2:1810894-1810913 | None:intergenic | 55.0% | |
| CTTAACCCCGACATTTGCCG+CGG | + | chr6_2:1810954-1810973 | Msa0904270:three_prime_UTR | 55.0% | |
| ATCTATGAAGTGGGCAGCCG+CGG | - | chr6_2:1810974-1810993 | None:intergenic | 55.0% | |
| ACCGTGGTGAAAGGGGCCAA+TGG | - | chr6_2:1808512-1808531 | None:intergenic | 60.0% | |
| TGGGGGTGACCGTGGTGAAA+GGG | - | chr6_2:1808520-1808539 | None:intergenic | 60.0% | |
| TTGGGGGTGACCGTGGTGAA+AGG | - | chr6_2:1808521-1808540 | None:intergenic | 60.0% | |
| ! | TTTGGAGTTGGGGGTGACCG+TGG | - | chr6_2:1808528-1808547 | None:intergenic | 60.0% |
| GGGGGTGACCGTGGTGAAAG+GGG | - | chr6_2:1808519-1808538 | None:intergenic | 65.0% | |
| TGGGCAGCCGCGGCAAATGT+CGG | - | chr6_2:1810964-1810983 | None:intergenic | 65.0% | |
| GGCAGCCGCGGCAAATGTCG+GGG | - | chr6_2:1810962-1810981 | None:intergenic | 70.0% | |
| GGGCAGCCGCGGCAAATGTC+GGG | - | chr6_2:1810963-1810982 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 1808367 | 1811051 | 1808367 | ID=Msa0904270;Name=Msa0904270 |
| chr6_2 | mRNA | 1808367 | 1811051 | 1808367 | ID=Msa0904270-mRNA-1;Parent=Msa0904270;Name=Msa0904270-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0|0.12|0.75|0.57|0.75|8|194|272 |
| chr6_2 | exon | 1808367 | 1808556 | 1808367 | ID=Msa0904270-mRNA-1:exon:642;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1808849 | 1808960 | 1808849 | ID=Msa0904270-mRNA-1:exon:643;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1809339 | 1809403 | 1809339 | ID=Msa0904270-mRNA-1:exon:644;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1809483 | 1809537 | 1809483 | ID=Msa0904270-mRNA-1:exon:645;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1809631 | 1809714 | 1809631 | ID=Msa0904270-mRNA-1:exon:646;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1810156 | 1810305 | 1810156 | ID=Msa0904270-mRNA-1:exon:647;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1810393 | 1810523 | 1810393 | ID=Msa0904270-mRNA-1:exon:648;Parent=Msa0904270-mRNA-1 |
| chr6_2 | exon | 1810826 | 1811051 | 1810826 | ID=Msa0904270-mRNA-1:exon:649;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1808367 | 1808556 | 1808367 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1808849 | 1808960 | 1808849 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1809339 | 1809403 | 1809339 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1809483 | 1809537 | 1809483 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1809631 | 1809714 | 1809631 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1810156 | 1810305 | 1810156 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1810393 | 1810523 | 1810393 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | CDS | 1810826 | 1810857 | 1810826 | ID=Msa0904270-mRNA-1:cds;Parent=Msa0904270-mRNA-1 |
| chr6_2 | three_prime_UTR | 1810858 | 1811051 | 1810858 | ID=Msa0904270-mRNA-1:three_prime_utr;Parent=Msa0904270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
