AlfalfaGEDB | Msa0904480

M. sativa cultivar zhongmu-4 / Msa0904480

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904480	KEH24950.1	55.983	234	74	4	1	212	1	227	2.63e-74	239

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904480	sp\|Q9STS6\|LBD27_ARATH	50.000	102	50	1	9	110	36	136	1.35e-25	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0904480	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904480	MtrunA17_Chr6g0452661	55.983	234	74	4	1	212	1	227	2.42e-78	239
Msa0904480	MtrunA17_Chr5g0439111	62.346	162	49	3	1	152	1	160	4.03e-56	182
Msa0904480	MtrunA17_Chr6g0452691	65.693	137	47	0	1	137	1	137	5.11e-56	180
Msa0904480	MtrunA17_Chr6g0452671	55.172	145	64	1	7	151	9	152	2.89e-51	169
Msa0904480	MtrunA17_Chr4g0055441	53.793	145	57	3	10	154	3	137	6.76e-43	145
Msa0904480	MtrunA17_Chr4g0059901	53.211	109	46	4	8	114	9	114	6.04e-29	112
Msa0904480	MtrunA17_Chr8g0342351	50.000	104	51	1	8	111	11	113	1.95e-26	105
Msa0904480	MtrunA17_Chr2g0330201	49.541	109	50	2	8	114	18	123	4.78e-25	102
Msa0904480	MtrunA17_Chr6g0449641	41.525	118	65	2	7	124	7	120	8.19e-25	97.8
Msa0904480	MtrunA17_Chr7g0227511	35.374	147	69	4	7	152	9	130	1.07e-24	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904480	AT3G47870.1	50.000	102	50	1	9	110	36	136	1.37e-26	107
Msa0904480	AT3G13850.1	40.816	147	71	3	8	139	35	180	3.30e-25	102
Msa0904480	AT1G72980.1	41.135	141	71	4	9	146	13	144	3.35e-24	98.6
Msa0904480	AT3G27650.1	44.554	101	55	1	7	107	37	136	4.39e-24	96.7
Msa0904480	AT1G65620.1	46.067	89	47	1	1	89	1	88	8.52e-23	94.4
Msa0904480	AT1G65620.4	46.067	89	47	1	1	89	1	88	8.52e-23	94.4
Msa0904480	AT1G65620.3	46.067	89	47	1	1	89	1	88	8.52e-23	94.4
Msa0904480	AT1G65620.5	46.067	89	47	1	1	89	1	88	8.52e-23	94.4
Msa0904480	AT1G65620.2	46.067	89	47	1	1	89	1	88	8.52e-23	94.4
Msa0904480	AT5G66870.1	45.977	87	46	1	10	96	8	93	5.92e-22	94.7

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Find 61 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATATTGTCATTGGAGC+AGG	0.529642	6_2:+2147514	None:intergenic
AAAGATACTAAACGAAATCA+AGG	0.515917	6_2:-2150417	Msa0904480:CDS
AAATCCTATGAATACAACTA+GGG	0.586418	6_2:-2150096	Msa0904480:CDS
AACAGAAAGAGTTACAAGCT+TGG	0.554231	6_2:+2147129	None:intergenic
AACTCTTTCTGTTTAAGACC+AGG	0.549474	6_2:-2147119	Msa0904480:CDS
AAGAAACTGTAGATAATCAT+TGG	0.438111	6_2:-2149689	Msa0904480:CDS
ACAACTAGGGTTAGCAACAG+TGG	0.645530	6_2:-2150083	Msa0904480:CDS
ACAAGCTTGGCATTTGCACC+AGG	0.460421	6_2:+2147142	None:intergenic
ACAGAAGTACTGTTATAAGA+GGG	0.655159	6_2:-2147636	Msa0904480:CDS
ACATCAAGACATCCATTTAC+TGG	0.360415	6_2:+2150329	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACGATCATGAAAATAAACA+AGG	-	chr6_2:2147090-2147109	Msa0904480:CDS	30.0%
GCAGATAAACCAAAAATGTT+TGG	-	chr6_2:2147181-2147200	Msa0904480:CDS	30.0%
GGAATTTGAGAACAAGTATA+AGG	+	chr6_2:2147475-2147494	None:intergenic	30.0%
TGGCGATAAATTTGAAAGTT+TGG	-	chr6_2:2147624-2147643	Msa0904480:CDS	30.0%
GTGTTTGTTCAATGAGTATT+TGG	-	chr6_2:2147833-2147852	Msa0904480:intron	30.0%
GTTTGTTCAATGAGTATTTG+GGG	-	chr6_2:2147835-2147854	Msa0904480:intron	30.0%
TTTGTTCAATGAGTATTTGG+GGG	-	chr6_2:2147836-2147855	Msa0904480:intron	30.0%
AGATAATCATTGGACGTTAA+AGG	-	chr6_2:2147978-2147997	Msa0904480:intron	30.0%
TACGTTGGATCATCTTTAAT+AGG	-	chr6_2:2148216-2148235	Msa0904480:intron	30.0%
ATAGGATATTGAATTCTTGG+GGG	-	chr6_2:2148234-2148253	Msa0904480:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	2147088	2150591	2147088	ID=Msa0904480;Name=Msa0904480
chr6_2	mRNA	2147088	2150591	2147088	ID=Msa0904480-mRNA-1;Parent=Msa0904480;Name=Msa0904480-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|0.25\|0.66\|0.5\|4\|0\|333
chr6_2	exon	2149978	2150591	2149978	ID=Msa0904480-mRNA-1:exon:702;Parent=Msa0904480-mRNA-1
chr6_2	exon	2149680	2149725	2149680	ID=Msa0904480-mRNA-1:exon:701;Parent=Msa0904480-mRNA-1
chr6_2	exon	2147484	2147665	2147484	ID=Msa0904480-mRNA-1:exon:700;Parent=Msa0904480-mRNA-1
chr6_2	exon	2147088	2147247	2147088	ID=Msa0904480-mRNA-1:exon:699;Parent=Msa0904480-mRNA-1
chr6_2	CDS	2149978	2150591	2149978	ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1
chr6_2	CDS	2149680	2149725	2149680	ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1
chr6_2	CDS	2147484	2147665	2147484	ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1
chr6_2	CDS	2147088	2147247	2147088	ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1

Gene Sequence

>Msa0904480

ATGACGATCATGAAAATAAACAAGGCTTGTGCAGCATGCAAGTATCAAAGAAGGAAGTGTACAAGGGAATGCATGTTAGCTCCTTATTTTCCAGCAGATAAACCAAAAATGTTTGGCGACGCTCATCGTTTGTTTGGTGTTTCCAACATACAAAAGATACTAAACGAAATCAAGGACAAAGGTAAAAGAGATCAAGCTATGACATCAATTATTGTTGAGTCGAATATTCGTGCAAAATTTCCAGTAAATGGATGTCTTGATGTTATTAAGCTATATGAAGGTATGTTACTTGAGTCTTATGCTGAGTTAAATCTAACAAATATGTTACTAGCTTATTGTAAGCGAAACAATCATTCACAACAACAAAATCTTCATTCCTCACTACCTTATACTTGTTCTCAAATTCCAAACAATTATGGTGATATCATCCCTCATGATGTTAATAATACTCTACTTGATACAAAGCCGAATATAAATCCTATGAATACAACTAGGGTTAGCAACAGTGGTGATGTCGATGTCATAAAAGAATTTGATGGCGATAAATTTGAAAGTTTGGATGATGATGTTCTTTTCAACATAGATGACCTCATGGATGATGTTGACTTCAGCAGCATAGGCGAAGAAGAAGAAACTGTAGATAATCATTGGACGTTAAAGAGAAGATACAGAAGTACTGTTATAAGAGGGAACTCGTTCCAGAACCGATTCTGCTTCGACTATGAGAAGAATGAATATATGGAAACATACCTTGAAGAATCTGCAAACAAGTGGAAACTTGGTGCTGCGCCTGCTCCAATGACAATATGTTTTGTTCTTTTGCTTTTCATCCCAATGCAGTGGTTGTTCCGTAGAAATGCGACTAGCTTTCTTCTGCGCGAAATTTATGGAAATCCAGGCCCGCTTCAGTTTGACGGCCCTGGACCCTGGTGCAAATGCCAAGCTTGTAACTCTTTCTGTTTAAGACCAGGACTACATGCCCTGCAGCATTGTCCCATTTAG

Protein sequence

>Msa0904480

MTIMKINKACAACKYQRRKCTRECMLAPYFPADKPKMFGDAHRLFGVSNIQKILNEIKDKGKRDQAMTSIIVESNIRAKFPVNGCLDVIKLYEGMLLESYAELNLTNMLLAYCKRNNHSQQQNLHSSLPYTCSQIPNNYGDIIPHDVNNTLLDTKPNINPMNTTRVSNSGDVDVIKEFDGDKFESLDDDVLFNIDDLMDDVDFSSIGEEEETVDNHWTLKRRYRSTVIRGNSFQNRFCFDYEKNEYMETYLEESANKWKLGAAPAPMTICFVLLLFIPMQWLFRRNATSFLLREIYGNPGPLQFDGPGPWCKCQACNSFCLRPGLHALQHCPI*