Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904480 | KEH24950.1 | 55.983 | 234 | 74 | 4 | 1 | 212 | 1 | 227 | 2.63e-74 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904480 | sp|Q9STS6|LBD27_ARATH | 50.000 | 102 | 50 | 1 | 9 | 110 | 36 | 136 | 1.35e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0904480 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904480 | MtrunA17_Chr6g0452661 | 55.983 | 234 | 74 | 4 | 1 | 212 | 1 | 227 | 2.42e-78 | 239 |
| Msa0904480 | MtrunA17_Chr5g0439111 | 62.346 | 162 | 49 | 3 | 1 | 152 | 1 | 160 | 4.03e-56 | 182 |
| Msa0904480 | MtrunA17_Chr6g0452691 | 65.693 | 137 | 47 | 0 | 1 | 137 | 1 | 137 | 5.11e-56 | 180 |
| Msa0904480 | MtrunA17_Chr6g0452671 | 55.172 | 145 | 64 | 1 | 7 | 151 | 9 | 152 | 2.89e-51 | 169 |
| Msa0904480 | MtrunA17_Chr4g0055441 | 53.793 | 145 | 57 | 3 | 10 | 154 | 3 | 137 | 6.76e-43 | 145 |
| Msa0904480 | MtrunA17_Chr4g0059901 | 53.211 | 109 | 46 | 4 | 8 | 114 | 9 | 114 | 6.04e-29 | 112 |
| Msa0904480 | MtrunA17_Chr8g0342351 | 50.000 | 104 | 51 | 1 | 8 | 111 | 11 | 113 | 1.95e-26 | 105 |
| Msa0904480 | MtrunA17_Chr2g0330201 | 49.541 | 109 | 50 | 2 | 8 | 114 | 18 | 123 | 4.78e-25 | 102 |
| Msa0904480 | MtrunA17_Chr6g0449641 | 41.525 | 118 | 65 | 2 | 7 | 124 | 7 | 120 | 8.19e-25 | 97.8 |
| Msa0904480 | MtrunA17_Chr7g0227511 | 35.374 | 147 | 69 | 4 | 7 | 152 | 9 | 130 | 1.07e-24 | 98.6 |
| Msa0904480 | MtrunA17_Chr5g0402611 | 45.714 | 105 | 56 | 1 | 7 | 111 | 6 | 109 | 3.61e-24 | 100 |
| Msa0904480 | MtrunA17_Chr6g0449651 | 43.564 | 101 | 56 | 1 | 7 | 107 | 65 | 164 | 4.02e-24 | 97.8 |
| Msa0904480 | MtrunA17_Chr3g0115431 | 45.098 | 102 | 55 | 1 | 10 | 111 | 10 | 110 | 1.00e-23 | 97.1 |
| Msa0904480 | MtrunA17_Chr2g0311601 | 38.182 | 110 | 67 | 1 | 10 | 119 | 14 | 122 | 2.85e-23 | 94.4 |
| Msa0904480 | MtrunA17_Chr8g0353981 | 41.525 | 118 | 60 | 2 | 7 | 124 | 5 | 113 | 2.73e-22 | 93.6 |
| Msa0904480 | MtrunA17_Chr3g0106101 | 39.796 | 98 | 58 | 1 | 10 | 107 | 8 | 104 | 7.85e-22 | 90.9 |
| Msa0904480 | MtrunA17_Chr3g0114061 | 34.722 | 144 | 86 | 4 | 10 | 146 | 9 | 151 | 1.13e-21 | 90.1 |
| Msa0904480 | MtrunA17_Chr4g0043421 | 30.120 | 166 | 98 | 4 | 10 | 175 | 16 | 163 | 1.26e-21 | 90.1 |
| Msa0904480 | MtrunA17_Chr4g0058651 | 40.187 | 107 | 62 | 2 | 7 | 112 | 9 | 114 | 1.37e-21 | 90.5 |
| Msa0904480 | MtrunA17_Chr3g0097221 | 41.739 | 115 | 66 | 1 | 7 | 121 | 5 | 118 | 1.52e-21 | 92.8 |
| Msa0904480 | MtrunA17_Chr3g0117121 | 40.385 | 104 | 61 | 1 | 7 | 110 | 8 | 110 | 2.13e-21 | 90.1 |
| Msa0904480 | MtrunA17_Chr5g0437571 | 37.864 | 103 | 63 | 1 | 4 | 106 | 1 | 102 | 8.20e-21 | 87.8 |
| Msa0904480 | MtrunA17_Chr7g0225111 | 36.607 | 112 | 70 | 1 | 6 | 117 | 2 | 112 | 2.41e-20 | 85.1 |
| Msa0904480 | MtrunA17_Chr1g0200201 | 41.739 | 115 | 62 | 2 | 10 | 124 | 73 | 182 | 2.57e-20 | 88.2 |
| Msa0904480 | MtrunA17_Chr5g0437401 | 32.639 | 144 | 84 | 3 | 7 | 138 | 9 | 151 | 2.77e-20 | 86.7 |
| Msa0904480 | MtrunA17_Chr3g0129071 | 40.625 | 96 | 56 | 1 | 10 | 105 | 48 | 142 | 6.30e-20 | 87.4 |
| Msa0904480 | MtrunA17_Chr6g0449311 | 48.864 | 88 | 42 | 1 | 37 | 124 | 1 | 85 | 7.25e-20 | 84.7 |
| Msa0904480 | MtrunA17_Chr5g0432451 | 36.975 | 119 | 73 | 2 | 2 | 119 | 36 | 153 | 2.18e-19 | 85.5 |
| Msa0904480 | MtrunA17_Chr5g0438091 | 38.947 | 95 | 57 | 1 | 10 | 104 | 40 | 133 | 3.22e-19 | 84.3 |
| Msa0904480 | MtrunA17_Chr4g0040831 | 43.182 | 88 | 48 | 2 | 6 | 92 | 12 | 98 | 5.05e-19 | 84.0 |
| Msa0904480 | MtrunA17_Chr5g0444351 | 37.273 | 110 | 66 | 3 | 10 | 118 | 6 | 113 | 5.45e-19 | 82.4 |
| Msa0904480 | MtrunA17_Chr4g0030001 | 44.211 | 95 | 51 | 2 | 10 | 103 | 25 | 118 | 3.59e-18 | 81.3 |
| Msa0904480 | MtrunA17_Chr3g0113891 | 36.000 | 100 | 63 | 1 | 7 | 106 | 12 | 110 | 5.71e-18 | 80.5 |
| Msa0904480 | MtrunA17_Chr8g0374591 | 36.697 | 109 | 67 | 2 | 5 | 112 | 4 | 111 | 1.20e-17 | 78.2 |
| Msa0904480 | MtrunA17_Chr8g0351721 | 37.383 | 107 | 65 | 2 | 10 | 115 | 19 | 124 | 1.04e-15 | 75.1 |
| Msa0904480 | MtrunA17_Chr8g0374601 | 37.615 | 109 | 66 | 2 | 5 | 112 | 22 | 129 | 1.75e-15 | 75.5 |
| Msa0904480 | MtrunA17_Chr6g0460951 | 28.796 | 191 | 120 | 6 | 10 | 189 | 41 | 226 | 3.74e-15 | 73.6 |
| Msa0904480 | MtrunA17_Chr8g0374581 | 37.273 | 110 | 66 | 3 | 5 | 112 | 4 | 112 | 1.13e-14 | 72.4 |
| Msa0904480 | MtrunA17_Chr6g0460941 | 37.647 | 85 | 51 | 2 | 6 | 89 | 4 | 87 | 9.98e-14 | 66.2 |
| Msa0904480 | MtrunA17_Chr7g0245871 | 36.458 | 96 | 59 | 2 | 10 | 104 | 28 | 122 | 1.21e-13 | 69.7 |
| Msa0904480 | MtrunA17_Chr7g0260971 | 40.741 | 81 | 46 | 2 | 10 | 89 | 15 | 94 | 2.04e-13 | 68.6 |
| Msa0904480 | MtrunA17_Chr5g0435641 | 28.182 | 110 | 77 | 2 | 3 | 111 | 1 | 109 | 2.14e-13 | 68.2 |
| Msa0904480 | MtrunA17_Chr2g0326041 | 56.250 | 48 | 21 | 0 | 10 | 57 | 34 | 81 | 3.45e-13 | 64.7 |
| Msa0904480 | MtrunA17_Chr1g0184281 | 36.842 | 95 | 58 | 2 | 10 | 103 | 16 | 109 | 3.60e-13 | 67.8 |
| Msa0904480 | MtrunA17_Chr8g0351701 | 34.951 | 103 | 65 | 2 | 10 | 111 | 24 | 125 | 4.26e-13 | 67.8 |
| Msa0904480 | MtrunA17_Chr4g0046201 | 36.471 | 85 | 52 | 2 | 6 | 89 | 2 | 85 | 4.34e-13 | 68.6 |
| Msa0904480 | MtrunA17_Chr1g0184271 | 25.131 | 191 | 126 | 7 | 10 | 196 | 13 | 190 | 2.04e-12 | 65.9 |
| Msa0904480 | MtrunA17_Chr7g0261031 | 34.737 | 95 | 60 | 2 | 10 | 103 | 9 | 102 | 6.81e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904480 | AT3G47870.1 | 50.000 | 102 | 50 | 1 | 9 | 110 | 36 | 136 | 1.37e-26 | 107 |
| Msa0904480 | AT3G13850.1 | 40.816 | 147 | 71 | 3 | 8 | 139 | 35 | 180 | 3.30e-25 | 102 |
| Msa0904480 | AT1G72980.1 | 41.135 | 141 | 71 | 4 | 9 | 146 | 13 | 144 | 3.35e-24 | 98.6 |
| Msa0904480 | AT3G27650.1 | 44.554 | 101 | 55 | 1 | 7 | 107 | 37 | 136 | 4.39e-24 | 96.7 |
| Msa0904480 | AT1G65620.1 | 46.067 | 89 | 47 | 1 | 1 | 89 | 1 | 88 | 8.52e-23 | 94.4 |
| Msa0904480 | AT1G65620.4 | 46.067 | 89 | 47 | 1 | 1 | 89 | 1 | 88 | 8.52e-23 | 94.4 |
| Msa0904480 | AT1G65620.3 | 46.067 | 89 | 47 | 1 | 1 | 89 | 1 | 88 | 8.52e-23 | 94.4 |
| Msa0904480 | AT1G65620.5 | 46.067 | 89 | 47 | 1 | 1 | 89 | 1 | 88 | 8.52e-23 | 94.4 |
| Msa0904480 | AT1G65620.2 | 46.067 | 89 | 47 | 1 | 1 | 89 | 1 | 88 | 8.52e-23 | 94.4 |
| Msa0904480 | AT5G66870.1 | 45.977 | 87 | 46 | 1 | 10 | 96 | 8 | 93 | 5.92e-22 | 94.7 |
| Msa0904480 | AT5G63090.4 | 32.738 | 168 | 92 | 5 | 7 | 172 | 9 | 157 | 1.15e-21 | 91.3 |
| Msa0904480 | AT5G63090.3 | 32.738 | 168 | 92 | 5 | 7 | 172 | 9 | 157 | 1.15e-21 | 91.3 |
| Msa0904480 | AT5G63090.2 | 32.738 | 168 | 92 | 5 | 7 | 172 | 9 | 157 | 1.15e-21 | 91.3 |
| Msa0904480 | AT5G63090.1 | 32.738 | 168 | 92 | 5 | 7 | 172 | 9 | 157 | 1.15e-21 | 91.3 |
| Msa0904480 | AT3G26660.1 | 37.069 | 116 | 71 | 2 | 8 | 123 | 4 | 117 | 2.34e-21 | 88.2 |
| Msa0904480 | AT3G26620.1 | 37.500 | 104 | 64 | 1 | 8 | 111 | 4 | 106 | 7.02e-21 | 87.0 |
| Msa0904480 | AT1G31320.1 | 46.250 | 80 | 42 | 1 | 10 | 89 | 14 | 92 | 7.51e-21 | 88.6 |
| Msa0904480 | AT2G30130.1 | 33.613 | 119 | 78 | 1 | 10 | 128 | 9 | 126 | 8.18e-20 | 86.3 |
| Msa0904480 | AT1G07900.1 | 35.762 | 151 | 90 | 4 | 10 | 159 | 34 | 178 | 7.84e-19 | 83.6 |
| Msa0904480 | AT2G28500.1 | 42.574 | 101 | 57 | 1 | 10 | 110 | 56 | 155 | 8.68e-19 | 84.3 |
| Msa0904480 | AT3G50510.1 | 37.273 | 110 | 67 | 2 | 5 | 113 | 8 | 116 | 1.43e-18 | 82.8 |
| Msa0904480 | AT3G50510.2 | 37.273 | 110 | 67 | 2 | 5 | 113 | 8 | 116 | 1.43e-18 | 82.8 |
| Msa0904480 | AT3G11090.1 | 32.051 | 156 | 96 | 5 | 5 | 159 | 7 | 153 | 2.36e-18 | 81.6 |
| Msa0904480 | AT1G16530.1 | 35.000 | 140 | 78 | 6 | 10 | 142 | 15 | 148 | 2.56e-18 | 81.3 |
| Msa0904480 | AT2G23660.2 | 43.678 | 87 | 48 | 1 | 10 | 96 | 6 | 91 | 3.15e-18 | 84.3 |
| Msa0904480 | AT2G23660.3 | 43.678 | 87 | 48 | 1 | 10 | 96 | 6 | 91 | 3.15e-18 | 84.3 |
| Msa0904480 | AT2G23660.1 | 43.678 | 87 | 48 | 1 | 10 | 96 | 6 | 91 | 3.15e-18 | 84.3 |
| Msa0904480 | AT2G40470.2 | 34.646 | 127 | 73 | 3 | 10 | 127 | 21 | 146 | 3.77e-18 | 81.6 |
| Msa0904480 | AT2G40470.1 | 34.646 | 127 | 73 | 3 | 10 | 127 | 46 | 171 | 6.47e-18 | 81.6 |
| Msa0904480 | AT2G30340.2 | 35.294 | 102 | 65 | 1 | 2 | 103 | 46 | 146 | 2.46e-17 | 80.9 |
| Msa0904480 | AT2G30340.1 | 35.294 | 102 | 65 | 1 | 2 | 103 | 45 | 145 | 2.68e-17 | 80.9 |
| Msa0904480 | AT5G15060.1 | 47.945 | 73 | 37 | 1 | 10 | 81 | 18 | 90 | 2.81e-17 | 77.8 |
| Msa0904480 | AT1G06280.1 | 40.206 | 97 | 50 | 2 | 7 | 96 | 22 | 117 | 3.15e-17 | 79.3 |
| Msa0904480 | AT3G03760.1 | 35.294 | 102 | 64 | 2 | 10 | 110 | 52 | 152 | 3.97e-14 | 72.0 |
| Msa0904480 | AT4G00220.1 | 34.653 | 101 | 64 | 2 | 12 | 111 | 20 | 119 | 1.33e-13 | 69.7 |
| Msa0904480 | AT2G19820.1 | 35.802 | 81 | 52 | 0 | 10 | 90 | 13 | 93 | 1.19e-12 | 64.7 |
| Msa0904480 | AT2G42440.1 | 37.037 | 81 | 49 | 2 | 10 | 89 | 8 | 87 | 3.20e-12 | 65.9 |
| Msa0904480 | AT2G42430.1 | 35.955 | 89 | 55 | 2 | 2 | 89 | 8 | 95 | 3.56e-12 | 65.9 |
| Msa0904480 | AT3G58190.1 | 34.021 | 97 | 62 | 2 | 10 | 105 | 12 | 107 | 3.64e-12 | 65.5 |
| Msa0904480 | AT5G06080.1 | 37.349 | 83 | 50 | 2 | 8 | 89 | 6 | 87 | 4.96e-12 | 64.3 |
| Msa0904480 | AT4G00210.1 | 30.469 | 128 | 87 | 2 | 10 | 136 | 12 | 138 | 6.99e-12 | 64.7 |
| Msa0904480 | AT2G45420.1 | 33.663 | 101 | 65 | 2 | 12 | 111 | 40 | 139 | 9.24e-12 | 65.1 |
| Msa0904480 | AT2G31310.1 | 30.693 | 101 | 68 | 2 | 6 | 105 | 4 | 103 | 4.74e-11 | 61.6 |
Find 61 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTGCGCGAAATTTA+TGG | 0.155916 | 6_2:-2147200 | Msa0904480:CDS |
| CGTGCAAAATTTCCAGTAAA+TGG | 0.156816 | 6_2:-2150341 | Msa0904480:CDS |
| TGCAAGGGAAAATGGCTAAA+TGG | 0.237839 | 6_2:+2147073 | None:intergenic |
| TCTCAAATTCCAAACAATTA+TGG | 0.241649 | 6_2:-2150173 | Msa0904480:CDS |
| GGTTTATCTGCTGGAAAATA+AGG | 0.267829 | 6_2:+2150488 | None:intergenic |
| TGGCGATAAATTTGAAAGTT+TGG | 0.267892 | 6_2:-2150033 | Msa0904480:CDS |
| TGGCATTTGCACCAGGGTCC+AGG | 0.322640 | 6_2:+2147149 | None:intergenic |
| CTATGAGAAGAATGAATATA+TGG | 0.357697 | 6_2:-2147584 | Msa0904480:CDS |
| CTAACCCTAGTTGTATTCAT+AGG | 0.358430 | 6_2:+2150092 | None:intergenic |
| ACATCAAGACATCCATTTAC+TGG | 0.360415 | 6_2:+2150329 | None:intergenic |
| GGAATTTGAGAACAAGTATA+AGG | 0.360419 | 6_2:+2150185 | None:intergenic |
| AGATAATCATTGGACGTTAA+AGG | 0.369647 | 6_2:-2149679 | Msa0904480:intron |
| CCGTCAAACTGAAGCGGGCC+TGG | 0.378965 | 6_2:+2147173 | None:intergenic |
| ATGATATCACCATAATTGTT+TGG | 0.382319 | 6_2:+2150164 | None:intergenic |
| GGCGACGCTCATCGTTTGTT+TGG | 0.384725 | 6_2:-2150455 | Msa0904480:CDS |
| AGTCGAAGCAGAATCGGTTC+TGG | 0.395435 | 6_2:+2147605 | None:intergenic |
| ACTTGTTTGCAGATTCTTCA+AGG | 0.402027 | 6_2:+2147554 | None:intergenic |
| GTATTCATAGGATTTATATT+CGG | 0.419731 | 6_2:+2150104 | None:intergenic |
| GCAAGGGAAAATGGCTAAAT+GGG | 0.422527 | 6_2:+2147074 | None:intergenic |
| AGAACAAAACATATTGTCAT+TGG | 0.430870 | 6_2:+2147508 | None:intergenic |
| TGCTGCAGGGCATGTAGTCC+TGG | 0.432639 | 6_2:+2147101 | None:intergenic |
| AAGAAACTGTAGATAATCAT+TGG | 0.438111 | 6_2:-2149689 | Msa0904480:CDS |
| CGCGAAATTTATGGAAATCC+AGG | 0.438934 | 6_2:-2147191 | Msa0904480:CDS |
| AGTTTGACGGCCCTGGACCC+TGG | 0.442359 | 6_2:-2147160 | Msa0904480:CDS |
| TACAGAAGTACTGTTATAAG+AGG | 0.443086 | 6_2:-2147637 | Msa0904480:CDS |
| CCAGGCCCGCTTCAGTTTGA+CGG | 0.444861 | 6_2:-2147173 | Msa0904480:CDS |
| CCGCTTCAGTTTGACGGCCC+TGG | 0.456706 | 6_2:-2147167 | Msa0904480:CDS |
| ACAAGCTTGGCATTTGCACC+AGG | 0.460421 | 6_2:+2147142 | None:intergenic |
| GATGTCATAAAAGAATTTGA+TGG | 0.461807 | 6_2:-2150053 | Msa0904480:CDS |
| TCTGCAAACAAGTGGAAACT+TGG | 0.468927 | 6_2:-2147544 | Msa0904480:CDS |
| GATGTTATTAAGCTATATGA+AGG | 0.481386 | 6_2:-2150311 | Msa0904480:CDS |
| GTATAACCAACCACTGCATT+GGG | 0.484035 | 6_2:+2147473 | None:intergenic |
| AGTATAACCAACCACTGCAT+TGG | 0.491069 | 6_2:+2147472 | None:intergenic |
| ATCAAAGAAGGAAGTGTACA+AGG | 0.491716 | 6_2:-2150526 | Msa0904480:CDS |
| GGCATTTGCACCAGGGTCCA+GGG | 0.497704 | 6_2:+2147150 | None:intergenic |
| GCTAAATGGGACAATGCTGC+AGG | 0.499286 | 6_2:+2147087 | None:intergenic |
| TTTCAACATAGATGACCTCA+TGG | 0.512239 | 6_2:-2149997 | Msa0904480:CDS |
| AAAGATACTAAACGAAATCA+AGG | 0.515917 | 6_2:-2150417 | Msa0904480:CDS |
| TGGATGATGTTGACTTCAGC+AGG | 0.521140 | 6_2:-2149977 | Msa0904480:intron |
| CAGGGCCGTCAAACTGAAGC+GGG | 0.525172 | 6_2:+2147168 | None:intergenic |
| AAACATATTGTCATTGGAGC+AGG | 0.529642 | 6_2:+2147514 | None:intergenic |
| TCTCATAGTCGAAGCAGAAT+CGG | 0.539384 | 6_2:+2147599 | None:intergenic |
| GAAAGCTAGTCGCATTTCTA+CGG | 0.544040 | 6_2:+2147219 | None:intergenic |
| AGAGTATTATTAACATCATG+AGG | 0.545135 | 6_2:+2150140 | None:intergenic |
| TAAATCCTATGAATACAACT+AGG | 0.545521 | 6_2:-2150097 | Msa0904480:CDS |
| AACTCTTTCTGTTTAAGACC+AGG | 0.549474 | 6_2:-2147119 | Msa0904480:CDS |
| AACAGAAAGAGTTACAAGCT+TGG | 0.554231 | 6_2:+2147129 | None:intergenic |
| AGAACAAGTATAAGGTAGTG+AGG | 0.559305 | 6_2:+2150193 | None:intergenic |
| TTGAAGAATCTGCAAACAAG+TGG | 0.561015 | 6_2:-2147552 | Msa0904480:CDS |
| AAATCCTATGAATACAACTA+GGG | 0.586418 | 6_2:-2150096 | Msa0904480:CDS |
| CAGCATGCAAGTATCAAAGA+AGG | 0.595919 | 6_2:-2150538 | Msa0904480:CDS |
| CCAGGGCCGTCAAACTGAAG+CGG | 0.606100 | 6_2:+2147167 | None:intergenic |
| CAAGCTTGGCATTTGCACCA+GGG | 0.631197 | 6_2:+2147143 | None:intergenic |
| CTAAATGGGACAATGCTGCA+GGG | 0.631382 | 6_2:+2147088 | None:intergenic |
| TCAAAGAAGGAAGTGTACAA+GGG | 0.643253 | 6_2:-2150525 | Msa0904480:CDS |
| ACAACTAGGGTTAGCAACAG+TGG | 0.645530 | 6_2:-2150083 | Msa0904480:CDS |
| ACAGAAGTACTGTTATAAGA+GGG | 0.655159 | 6_2:-2147636 | Msa0904480:CDS |
| GACGATCATGAAAATAAACA+AGG | 0.666667 | 6_2:-2150567 | Msa0904480:CDS |
| GAGTATTATTAACATCATGA+GGG | 0.669438 | 6_2:+2150141 | None:intergenic |
| CTAAACGAAATCAAGGACAA+AGG | 0.675964 | 6_2:-2150410 | Msa0904480:CDS |
| TGAAGTCAACATCATCCATG+AGG | 0.719122 | 6_2:+2149982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATTTTGTTTAACTT+TGG | - | chr6_2:2147723-2147742 | Msa0904480:intron | 10.0% |
| !! | AATAAAAAAAAAAAAGAGTT+AGG | - | chr6_2:2147876-2147895 | Msa0904480:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTTG+AGG | - | chr6_2:2148055-2148074 | Msa0904480:intron | 10.0% |
| !! | TAATTCTGTTTAAATATTTA+GGG | - | chr6_2:2148161-2148180 | Msa0904480:intron | 10.0% |
| !!! | TTTCTATTTACATTTTTTAT+AGG | - | chr6_2:2148880-2148899 | Msa0904480:intron | 10.0% |
| !!! | TATTTATTTTAATTCTTTAG+TGG | - | chr6_2:2149267-2149286 | Msa0904480:intron | 10.0% |
| !! | CACCATATATAAAATATATT+GGG | + | chr6_2:2148118-2148137 | None:intergenic | 15.0% |
| !! | TCACCATATATAAAATATAT+TGG | + | chr6_2:2148119-2148138 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATATGGTGA+TGG | - | chr6_2:2148119-2148138 | Msa0904480:intron | 15.0% |
| !! | GTAATTCTGTTTAAATATTT+AGG | - | chr6_2:2148160-2148179 | Msa0904480:intron | 15.0% |
| !! | ATTTAAATAAGTATTCACAA+CGG | + | chr6_2:2149175-2149194 | None:intergenic | 15.0% |
| !! | GTATTCATAGGATTTATATT+CGG | + | chr6_2:2147556-2147575 | None:intergenic | 20.0% |
| !!! | AAACTTTTCAAAAAGTTGTT+TGG | - | chr6_2:2148079-2148098 | Msa0904480:intron | 20.0% |
| !!! | GTCCCAATATATTTTATATA+TGG | - | chr6_2:2148113-2148132 | Msa0904480:intron | 20.0% |
| !! | TTAATAGGATATTGAATTCT+TGG | - | chr6_2:2148231-2148250 | Msa0904480:intron | 20.0% |
| !! | TAATAGGATATTGAATTCTT+GGG | - | chr6_2:2148232-2148251 | Msa0904480:intron | 20.0% |
| !!! | TTTTATCTTTGCTCAATTTT+TGG | - | chr6_2:2148910-2148929 | Msa0904480:intron | 20.0% |
| !!! | TTTTGGTTAATGTGAAATAA+AGG | - | chr6_2:2148927-2148946 | Msa0904480:intron | 20.0% |
| !! | TTTAAATAAGTATTCACAAC+GGG | + | chr6_2:2149174-2149193 | None:intergenic | 20.0% |
| !! | TCAGAAAATAATATACACAA+CGG | + | chr6_2:2149207-2149226 | None:intergenic | 20.0% |
| !!! | GTATATTATTTTCTGAACAA+TGG | - | chr6_2:2149211-2149230 | Msa0904480:intron | 20.0% |
| !! | ATTTCTTTGTAGTATAACAA+TGG | + | chr6_2:2149372-2149391 | None:intergenic | 20.0% |
| !! | TTATGCTACAATATAAGTTT+GGG | + | chr6_2:2149422-2149441 | None:intergenic | 20.0% |
| !! | ATTATGCTACAATATAAGTT+TGG | + | chr6_2:2149423-2149442 | None:intergenic | 20.0% |
| !! | TCTGTTATATATAAATCCAA+TGG | + | chr6_2:2149562-2149581 | None:intergenic | 20.0% |
| !! | TAAAAGAATGGATATCTTTA+AGG | + | chr6_2:2149585-2149604 | None:intergenic | 20.0% |
| !!! | TAATTTTTTCACATCTACAT+AGG | + | chr6_2:2149644-2149663 | None:intergenic | 20.0% |
| !! | ATGTGAAAAAATTATGACAT+CGG | - | chr6_2:2149650-2149669 | Msa0904480:intron | 20.0% |
| !!! | TTGAAATTGCAATGAATTTT+AGG | - | chr6_2:2150270-2150289 | Msa0904480:CDS | 20.0% |
| !! | GTTTAGTATCTTTTGTATGT+TGG | + | chr6_2:2147233-2147252 | None:intergenic | 25.0% |
| ! | AAAGATACTAAACGAAATCA+AGG | - | chr6_2:2147240-2147259 | Msa0904480:intron | 25.0% |
| ! | GATGTTATTAAGCTATATGA+AGG | - | chr6_2:2147346-2147365 | Msa0904480:intron | 25.0% |
| ! | TCTCAAATTCCAAACAATTA+TGG | - | chr6_2:2147484-2147503 | Msa0904480:CDS | 25.0% |
| ! | ATGATATCACCATAATTGTT+TGG | + | chr6_2:2147496-2147515 | None:intergenic | 25.0% |
| ! | GAGTATTATTAACATCATGA+GGG | + | chr6_2:2147519-2147538 | None:intergenic | 25.0% |
| !! | AGAGTATTATTAACATCATG+AGG | + | chr6_2:2147520-2147539 | None:intergenic | 25.0% |
| ! | TAAATCCTATGAATACAACT+AGG | - | chr6_2:2147560-2147579 | Msa0904480:CDS | 25.0% |
| ! | AAATCCTATGAATACAACTA+GGG | - | chr6_2:2147561-2147580 | Msa0904480:CDS | 25.0% |
| ! | GATGTCATAAAAGAATTTGA+TGG | - | chr6_2:2147604-2147623 | Msa0904480:CDS | 25.0% |
| ! | AGTAAAGGATATATACTTAG+TGG | + | chr6_2:2147760-2147779 | None:intergenic | 25.0% |
| ! | GATTAAAACATATGCAGTAA+AGG | + | chr6_2:2147775-2147794 | None:intergenic | 25.0% |
| ! | CAAACATATACTTAACTGTA+AGG | + | chr6_2:2147809-2147828 | None:intergenic | 25.0% |
| ! | CTTACAGTTAAGTATATGTT+TGG | - | chr6_2:2147807-2147826 | Msa0904480:intron | 25.0% |
| ! | TGTTTGTTCAATGAGTATTT+GGG | - | chr6_2:2147834-2147853 | Msa0904480:intron | 25.0% |
| ! | TTAGAAGTAAATCTCTATTC+CGG | + | chr6_2:2147909-2147928 | None:intergenic | 25.0% |
| !! | ACTTCTAATAGCATTACTTT+TGG | - | chr6_2:2147921-2147940 | Msa0904480:intron | 25.0% |
| ! | AAGAAACTGTAGATAATCAT+TGG | - | chr6_2:2147968-2147987 | Msa0904480:intron | 25.0% |
| !! | TTTTCAAAAAGTTGTTTGGT+GGG | - | chr6_2:2148083-2148102 | Msa0904480:intron | 25.0% |
| !! | GTTTAAATATTTAGGGTTAC+CGG | - | chr6_2:2148168-2148187 | Msa0904480:intron | 25.0% |
| ! | AATAGGATATTGAATTCTTG+GGG | - | chr6_2:2148233-2148252 | Msa0904480:intron | 25.0% |
| !! | AAAAAGTATGTTAGTATTGG+TGG | - | chr6_2:2148257-2148276 | Msa0904480:intron | 25.0% |
| !!! | AAAAGTATGTTAGTATTGGT+GGG | - | chr6_2:2148258-2148277 | Msa0904480:intron | 25.0% |
| ! | CAAAAAGAGAGATAAAAATG+GGG | + | chr6_2:2148319-2148338 | None:intergenic | 25.0% |
| ! | CCAAAAAGAGAGATAAAAAT+GGG | + | chr6_2:2148320-2148339 | None:intergenic | 25.0% |
| ! | TCCAAAAAGAGAGATAAAAA+TGG | + | chr6_2:2148321-2148340 | None:intergenic | 25.0% |
| ! | GTATTCAATGAGAATTTCTT+TGG | - | chr6_2:2148374-2148393 | Msa0904480:intron | 25.0% |
| ! | TATGTGATGCGTAATATATT+TGG | - | chr6_2:2148997-2149016 | Msa0904480:intron | 25.0% |
| ! | CAGAAAATAATATACACAAC+GGG | + | chr6_2:2149206-2149225 | None:intergenic | 25.0% |
| ! | CACTTTAACTCAAAATCTTA+AGG | + | chr6_2:2149459-2149478 | None:intergenic | 25.0% |
| ! | AAATCCAATGGAAAAATGTA+GGG | + | chr6_2:2149550-2149569 | None:intergenic | 25.0% |
| ! | TAAATCCAATGGAAAAATGT+AGG | + | chr6_2:2149551-2149570 | None:intergenic | 25.0% |
| ! | TCATGACATAATTAGTTGTT+CGG | - | chr6_2:2149787-2149806 | Msa0904480:intron | 25.0% |
| !! | TGCAAGATTTTAAGCATATA+TGG | - | chr6_2:2149960-2149979 | Msa0904480:intron | 25.0% |
| ! | CTATGAGAAGAATGAATATA+TGG | - | chr6_2:2150073-2150092 | Msa0904480:CDS | 25.0% |
| ! | AGAACAAAACATATTGTCAT+TGG | + | chr6_2:2150152-2150171 | None:intergenic | 25.0% |
| !! | TGAATTTTAGGCTATAATGA+CGG | - | chr6_2:2150282-2150301 | Msa0904480:CDS | 25.0% |
| GACGATCATGAAAATAAACA+AGG | - | chr6_2:2147090-2147109 | Msa0904480:CDS | 30.0% | |
| !!! | AACATTTTTGGTTTATCTGC+TGG | + | chr6_2:2147181-2147200 | None:intergenic | 30.0% |
| GCAGATAAACCAAAAATGTT+TGG | - | chr6_2:2147181-2147200 | Msa0904480:CDS | 30.0% | |
| GGAATTTGAGAACAAGTATA+AGG | + | chr6_2:2147475-2147494 | None:intergenic | 30.0% | |
| TGGCGATAAATTTGAAAGTT+TGG | - | chr6_2:2147624-2147643 | Msa0904480:CDS | 30.0% | |
| GTGTTTGTTCAATGAGTATT+TGG | - | chr6_2:2147833-2147852 | Msa0904480:intron | 30.0% | |
| GTTTGTTCAATGAGTATTTG+GGG | - | chr6_2:2147835-2147854 | Msa0904480:intron | 30.0% | |
| TTTGTTCAATGAGTATTTGG+GGG | - | chr6_2:2147836-2147855 | Msa0904480:intron | 30.0% | |
| AGATAATCATTGGACGTTAA+AGG | - | chr6_2:2147978-2147997 | Msa0904480:intron | 30.0% | |
| ! | CTTTTCAAAAAGTTGTTTGG+TGG | - | chr6_2:2148082-2148101 | Msa0904480:intron | 30.0% |
| ! | TTTCAAAAAGTTGTTTGGTG+GGG | - | chr6_2:2148084-2148103 | Msa0904480:intron | 30.0% |
| TACGTTGGATCATCTTTAAT+AGG | - | chr6_2:2148216-2148235 | Msa0904480:intron | 30.0% | |
| ATAGGATATTGAATTCTTGG+GGG | - | chr6_2:2148234-2148253 | Msa0904480:intron | 30.0% | |
| ! | GGGAAAAAGTATGTTAGTAT+TGG | - | chr6_2:2148254-2148273 | Msa0904480:intron | 30.0% |
| !! | CCCATTTTTATCTCTCTTTT+TGG | - | chr6_2:2148317-2148336 | Msa0904480:intron | 30.0% |
| ! | AATGAGAATTTCTTTGGAGA+GGG | - | chr6_2:2148380-2148399 | Msa0904480:intron | 30.0% |
| ! | ATGGAGGAAGAATAAAGTTT+TGG | - | chr6_2:2148580-2148599 | Msa0904480:intron | 30.0% |
| !!! | AGGAAGAATAAAGTTTTGGA+AGG | - | chr6_2:2148584-2148603 | Msa0904480:intron | 30.0% |
| !!! | AAAGTTTTGGAAGGATAGTT+TGG | - | chr6_2:2148593-2148612 | Msa0904480:intron | 30.0% |
| TGAATGCAATAATCACAAAG+GGG | + | chr6_2:2148630-2148649 | None:intergenic | 30.0% | |
| CTGAATGCAATAATCACAAA+GGG | + | chr6_2:2148631-2148650 | None:intergenic | 30.0% | |
| TCAACAAAAGAAAAATGCAG+TGG | - | chr6_2:2148673-2148692 | Msa0904480:intron | 30.0% | |
| ! | TTTTGAATCAAACCTATAGC+AGG | - | chr6_2:2149036-2149055 | Msa0904480:intron | 30.0% |
| !!! | ATCAACTGATTTGAAGCTTT+TGG | - | chr6_2:2149130-2149149 | Msa0904480:intron | 30.0% |
| ! | TTAGTGGAATCTTCTTTTTG+TGG | - | chr6_2:2149283-2149302 | Msa0904480:intron | 30.0% |
| ! | TCTTTTTGTGGTACATTTAG+TGG | - | chr6_2:2149295-2149314 | Msa0904480:intron | 30.0% |
| TAGCGAAAGACATAAAAGAA+TGG | + | chr6_2:2149597-2149616 | None:intergenic | 30.0% | |
| AAATACTTCGCATTCTACAT+AGG | + | chr6_2:2149739-2149758 | None:intergenic | 30.0% | |
| !! | TACAGAAGTACTGTTATAAG+AGG | - | chr6_2:2150020-2150039 | Msa0904480:CDS | 30.0% |
| !! | ACAGAAGTACTGTTATAAGA+GGG | - | chr6_2:2150021-2150040 | Msa0904480:CDS | 30.0% |
| ! | ATCAAAGAAGGAAGTGTACA+AGG | - | chr6_2:2147131-2147150 | Msa0904480:CDS | 35.0% |
| ! | TCAAAGAAGGAAGTGTACAA+GGG | - | chr6_2:2147132-2147151 | Msa0904480:CDS | 35.0% |
| GGTTTATCTGCTGGAAAATA+AGG | + | chr6_2:2147172-2147191 | None:intergenic | 35.0% | |
| CTAAACGAAATCAAGGACAA+AGG | - | chr6_2:2147247-2147266 | Msa0904480:intron | 35.0% | |
| CGTGCAAAATTTCCAGTAAA+TGG | - | chr6_2:2147316-2147335 | Msa0904480:intron | 35.0% | |
| ACATCAAGACATCCATTTAC+TGG | + | chr6_2:2147331-2147350 | None:intergenic | 35.0% | |
| AGAACAAGTATAAGGTAGTG+AGG | + | chr6_2:2147467-2147486 | None:intergenic | 35.0% | |
| CTAACCCTAGTTGTATTCAT+AGG | + | chr6_2:2147568-2147587 | None:intergenic | 35.0% | |
| TTTCAACATAGATGACCTCA+TGG | - | chr6_2:2147660-2147679 | Msa0904480:intron | 35.0% | |
| AAAAGAGTTAGGTTCCAATC+CGG | - | chr6_2:2147887-2147906 | Msa0904480:intron | 35.0% | |
| AGTAAATCTCTATTCCGGAT+TGG | + | chr6_2:2147904-2147923 | None:intergenic | 35.0% | |
| ATAGGTTTAGAGATGGTATC+TGG | - | chr6_2:2148009-2148028 | Msa0904480:intron | 35.0% | |
| ! | AAATATTTAGGGTTACCGGT+CGG | - | chr6_2:2148172-2148191 | Msa0904480:intron | 35.0% |
| !! | TTTTTGGAAGATGACGATCA+AGG | - | chr6_2:2148333-2148352 | Msa0904480:intron | 35.0% |
| ! | CAATGAGAATTTCTTTGGAG+AGG | - | chr6_2:2148379-2148398 | Msa0904480:intron | 35.0% |
| ! | ATGAGAATTTCTTTGGAGAG+GGG | - | chr6_2:2148381-2148400 | Msa0904480:intron | 35.0% |
| ! | AGGCAGTGCAAAAATTTGTT+GGG | - | chr6_2:2148408-2148427 | Msa0904480:intron | 35.0% |
| !! | CAAAAATTTGTTGGGAGATG+TGG | - | chr6_2:2148416-2148435 | Msa0904480:intron | 35.0% |
| ATTTGTCAACCGAAAAGCAA+TGG | - | chr6_2:2148445-2148464 | Msa0904480:intron | 35.0% | |
| TTTGTCAACCGAAAAGCAAT+GGG | - | chr6_2:2148446-2148465 | Msa0904480:intron | 35.0% | |
| ! | ATTTGAGCCTTTTGACAAAG+TGG | - | chr6_2:2148500-2148519 | Msa0904480:intron | 35.0% |
| !! | TTTTGGAAGGATAGTTTGGT+AGG | - | chr6_2:2148597-2148616 | Msa0904480:intron | 35.0% |
| GCTGAATGCAATAATCACAA+AGG | + | chr6_2:2148632-2148651 | None:intergenic | 35.0% | |
| TGCAGTGGAAAGAATCTATT+AGG | - | chr6_2:2148688-2148707 | Msa0904480:intron | 35.0% | |
| GCAGTGGAAAGAATCTATTA+GGG | - | chr6_2:2148689-2148708 | Msa0904480:intron | 35.0% | |
| CAATGCATCATATACTCATG+AGG | + | chr6_2:2148806-2148825 | None:intergenic | 35.0% | |
| AGAAATGTAAGCAAAGTGGA+GGG | + | chr6_2:2148854-2148873 | None:intergenic | 35.0% | |
| AAGAAATGTAAGCAAAGTGG+AGG | + | chr6_2:2148855-2148874 | None:intergenic | 35.0% | |
| TGCAAGAAATGTAAGCAAAG+TGG | + | chr6_2:2148858-2148877 | None:intergenic | 35.0% | |
| ATGCAAGCATGACTTCAATA+TGG | - | chr6_2:2149079-2149098 | Msa0904480:intron | 35.0% | |
| GCTCACTTTAAATAGAGTTC+TGG | + | chr6_2:2149108-2149127 | None:intergenic | 35.0% | |
| ! | GTGGTATCTTTTTCTGTGTT+TGG | - | chr6_2:2149314-2149333 | Msa0904480:intron | 35.0% |
| AAAGTAAAGCTGAGCAACAA+AGG | - | chr6_2:2149673-2149692 | Msa0904480:intron | 35.0% | |
| AAGTAAAGCTGAGCAACAAA+GGG | - | chr6_2:2149674-2149693 | Msa0904480:intron | 35.0% | |
| GTTGTTCGGTCTTAATCAAA+TGG | - | chr6_2:2149801-2149820 | Msa0904480:intron | 35.0% | |
| TAACAACAGCAAGCATAACA+TGG | + | chr6_2:2149882-2149901 | None:intergenic | 35.0% | |
| ACACACTTCTGTAGTACTAA+TGG | + | chr6_2:2149937-2149956 | None:intergenic | 35.0% | |
| CTGTGATCATTACATACAGA+CGG | + | chr6_2:2149994-2150013 | None:intergenic | 35.0% | |
| ACTTGTTTGCAGATTCTTCA+AGG | + | chr6_2:2150106-2150125 | None:intergenic | 35.0% | |
| TTGAAGAATCTGCAAACAAG+TGG | - | chr6_2:2150105-2150124 | Msa0904480:CDS | 35.0% | |
| AAACATATTGTCATTGGAGC+AGG | + | chr6_2:2150146-2150165 | None:intergenic | 35.0% | |
| ! | TTTTCCGACTGATGTTAATC+CGG | + | chr6_2:2150329-2150348 | None:intergenic | 35.0% |
| ATAGTAGTTGGATGAAAAGC+TGG | + | chr6_2:2150352-2150371 | None:intergenic | 35.0% | |
| CCTCTCAATGTAATAGTAGT+TGG | + | chr6_2:2150364-2150383 | None:intergenic | 35.0% | |
| CCAACTACTATTACATTGAG+AGG | - | chr6_2:2150361-2150380 | Msa0904480:CDS | 35.0% | |
| TTTCTTCTGCGCGAAATTTA+TGG | - | chr6_2:2150457-2150476 | Msa0904480:CDS | 35.0% | |
| AACAGAAAGAGTTACAAGCT+TGG | + | chr6_2:2150531-2150550 | None:intergenic | 35.0% | |
| ! | AACTCTTTCTGTTTAAGACC+AGG | - | chr6_2:2150538-2150557 | Msa0904480:CDS | 35.0% |
| CAGCATGCAAGTATCAAAGA+AGG | - | chr6_2:2147119-2147138 | Msa0904480:CDS | 40.0% | |
| TGAAGTCAACATCATCCATG+AGG | + | chr6_2:2147678-2147697 | None:intergenic | 40.0% | |
| ! | ACGTTAAAGGTCGTGTTGAT+AGG | - | chr6_2:2147991-2148010 | Msa0904480:intron | 40.0% |
| ! | CGTGTTGATAGGTTTAGAGA+TGG | - | chr6_2:2148002-2148021 | Msa0904480:intron | 40.0% |
| ! | AATATTTAGGGTTACCGGTC+GGG | - | chr6_2:2148173-2148192 | Msa0904480:intron | 40.0% |
| TCCAAGAAAGTTGTCTACGT+TGG | - | chr6_2:2148201-2148220 | Msa0904480:intron | 40.0% | |
| TCCAACGTAGACAACTTTCT+TGG | + | chr6_2:2148205-2148224 | None:intergenic | 40.0% | |
| GAGGCAGTGCAAAAATTTGT+TGG | - | chr6_2:2148407-2148426 | Msa0904480:intron | 40.0% | |
| TTGTCAACCGAAAAGCAATG+GGG | - | chr6_2:2148447-2148466 | Msa0904480:intron | 40.0% | |
| GAAGGATAGTTTGGTAGGTA+GGG | - | chr6_2:2148602-2148621 | Msa0904480:intron | 40.0% | |
| TAAGCAAAGTGGAGGGATAT+AGG | + | chr6_2:2148847-2148866 | None:intergenic | 40.0% | |
| AATGGATCAAGACGATCATG+TGG | - | chr6_2:2149229-2149248 | Msa0904480:intron | 40.0% | |
| ! | GTGACCCTACATTTTTCCAT+TGG | - | chr6_2:2149543-2149562 | Msa0904480:intron | 40.0% |
| TCGGTCTTAATCAAATGGCA+CGG | - | chr6_2:2149806-2149825 | Msa0904480:intron | 40.0% | |
| !! | GTTATGCTTGCTGTTGTTAG+CGG | - | chr6_2:2149883-2149902 | Msa0904480:intron | 40.0% |
| TCTCATAGTCGAAGCAGAAT+CGG | + | chr6_2:2150061-2150080 | None:intergenic | 40.0% | |
| TCTGCAAACAAGTGGAAACT+TGG | - | chr6_2:2150113-2150132 | Msa0904480:CDS | 40.0% | |
| GTATAACCAACCACTGCATT+GGG | + | chr6_2:2150187-2150206 | None:intergenic | 40.0% | |
| AGTATAACCAACCACTGCAT+TGG | + | chr6_2:2150188-2150207 | None:intergenic | 40.0% | |
| CTATAATGACGGTGAAGCAT+TGG | - | chr6_2:2150293-2150312 | Msa0904480:CDS | 40.0% | |
| AATCCCGGATTAACATCAGT+CGG | - | chr6_2:2150322-2150341 | Msa0904480:CDS | 40.0% | |
| TTTCCGACTGATGTTAATCC+GGG | + | chr6_2:2150328-2150347 | None:intergenic | 40.0% | |
| ! | ATTGAGAGGCGTAATGTTCT+TGG | - | chr6_2:2150375-2150394 | Msa0904480:CDS | 40.0% |
| ! | TGATGCATGTTCTTGTTTGC+AGG | - | chr6_2:2150410-2150429 | Msa0904480:CDS | 40.0% |
| GAAAGCTAGTCGCATTTCTA+CGG | + | chr6_2:2150441-2150460 | None:intergenic | 40.0% | |
| CGCGAAATTTATGGAAATCC+AGG | - | chr6_2:2150466-2150485 | Msa0904480:CDS | 40.0% | |
| !! | TGAGCGTCGCCAAACATTTT+TGG | + | chr6_2:2147193-2147212 | None:intergenic | 45.0% |
| ! | ACAACTAGGGTTAGCAACAG+TGG | - | chr6_2:2147574-2147593 | Msa0904480:CDS | 45.0% |
| !! | TGGATGATGTTGACTTCAGC+AGG | - | chr6_2:2147680-2147699 | Msa0904480:intron | 45.0% |
| ! | ATATTTAGGGTTACCGGTCG+GGG | - | chr6_2:2148174-2148193 | Msa0904480:intron | 45.0% |
| ! | TTTCTTTGGAGAGGGGTAAG+AGG | - | chr6_2:2148388-2148407 | Msa0904480:intron | 45.0% |
| TGTCAACCGAAAAGCAATGG+GGG | - | chr6_2:2148448-2148467 | Msa0904480:intron | 45.0% | |
| !! | CCTAATCCCCCATTGCTTTT+CGG | + | chr6_2:2148457-2148476 | None:intergenic | 45.0% |
| ! | GCCTTTTGACAAAGTGGAGA+CGG | - | chr6_2:2148506-2148525 | Msa0904480:intron | 45.0% |
| TCCGTCTCCACTTTGTCAAA+AGG | + | chr6_2:2148510-2148529 | None:intergenic | 45.0% | |
| ! | GAGACGGAAGTTGATCCAAA+CGG | - | chr6_2:2148522-2148541 | Msa0904480:intron | 45.0% |
| !!! | GTTTTGGAAGGTGGTGTTGA+TGG | - | chr6_2:2148552-2148571 | Msa0904480:intron | 45.0% |
| GGAAGGATAGTTTGGTAGGT+AGG | - | chr6_2:2148601-2148620 | Msa0904480:intron | 45.0% | |
| TCAGCTGATCATCCTGCTAT+AGG | + | chr6_2:2149051-2149070 | None:intergenic | 45.0% | |
| TGGAAAAATGTAGGGTCACG+AGG | + | chr6_2:2149542-2149561 | None:intergenic | 45.0% | |
| CTGCGGAATATCATTGTCAG+CGG | - | chr6_2:2149837-2149856 | Msa0904480:intron | 45.0% | |
| ATAACATGGAGTGTGGGGAT+TGG | + | chr6_2:2149868-2149887 | None:intergenic | 45.0% | |
| CAAGCATAACATGGAGTGTG+GGG | + | chr6_2:2149873-2149892 | None:intergenic | 45.0% | |
| GCAAGCATAACATGGAGTGT+GGG | + | chr6_2:2149874-2149893 | None:intergenic | 45.0% | |
| AGCAAGCATAACATGGAGTG+TGG | + | chr6_2:2149875-2149894 | None:intergenic | 45.0% | |
| ! | TGCTTTTCATCCCAATGCAG+TGG | - | chr6_2:2150174-2150193 | Msa0904480:CDS | 45.0% |
| TTTCATCCCAATGCAGTGGT+TGG | - | chr6_2:2150178-2150197 | Msa0904480:CDS | 45.0% | |
| !! | AAGCATTGGTCTCTGAATCC+CGG | - | chr6_2:2150307-2150326 | Msa0904480:CDS | 45.0% |
| CTAAATGGGACAATGCTGCA+GGG | + | chr6_2:2150572-2150591 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+GGG | - | chr6_2:2148056-2148075 | Msa0904480:intron | 5.0% |
| ! | CTTTTGGACGACGCTAGCAT+AGG | - | chr6_2:2147937-2147956 | Msa0904480:intron | 50.0% |
| !! | TTTCTTGGATTAGCCCCGAC+CGG | + | chr6_2:2148190-2148209 | None:intergenic | 50.0% |
| CCGAAAAGCAATGGGGGATT+AGG | - | chr6_2:2148454-2148473 | Msa0904480:intron | 50.0% | |
| ! | ACGGAAGTTGATCCAAACGG+AGG | - | chr6_2:2148525-2148544 | Msa0904480:intron | 50.0% |
| CAACACCACCTTCCAAAACG+AGG | + | chr6_2:2148551-2148570 | None:intergenic | 50.0% | |
| !! | GGTGGTGTTGATGGCGTATA+TGG | - | chr6_2:2148561-2148580 | Msa0904480:intron | 50.0% |
| !! | GGTGTTGATGGCGTATATGG+AGG | - | chr6_2:2148564-2148583 | Msa0904480:intron | 50.0% |
| ! | GGGTCACGAGGAGAATTTTC+AGG | + | chr6_2:2149530-2149549 | None:intergenic | 50.0% |
| ! | CGGTGAGAAGCTTTTCAGCT+TGG | - | chr6_2:2149903-2149922 | Msa0904480:intron | 50.0% |
| ! | AGTCGAAGCAGAATCGGTTC+TGG | + | chr6_2:2150055-2150074 | None:intergenic | 50.0% |
| CAAGCTTGGCATTTGCACCA+GGG | + | chr6_2:2150517-2150536 | None:intergenic | 50.0% | |
| ACAAGCTTGGCATTTGCACC+AGG | + | chr6_2:2150518-2150537 | None:intergenic | 50.0% | |
| GGCGACGCTCATCGTTTGTT+TGG | - | chr6_2:2147202-2147221 | Msa0904480:CDS | 55.0% | |
| ! | TCCAAACGGAGGCCTCGTTT+TGG | - | chr6_2:2148536-2148555 | Msa0904480:intron | 55.0% |
| TCCAAAACGAGGCCTCCGTT+TGG | + | chr6_2:2148540-2148559 | None:intergenic | 55.0% | |
| !! | AACGGAGGCCTCGTTTTGGA+AGG | - | chr6_2:2148540-2148559 | Msa0904480:intron | 55.0% |
| TCGTGTCCAACTCAATCGCG+TGG | - | chr6_2:2149479-2149498 | Msa0904480:intron | 55.0% | |
| GAGCAACCACGCGATTGAGT+TGG | + | chr6_2:2149488-2149507 | None:intergenic | 55.0% | |
| ATGGCACGGACTTGTGACTG+CGG | - | chr6_2:2149820-2149839 | Msa0904480:intron | 55.0% | |
| !!! | GGAGGCCTCGTTTTGGAAGG+TGG | - | chr6_2:2148543-2148562 | Msa0904480:intron | 60.0% |
| CCAGGCCCGCTTCAGTTTGA+CGG | - | chr6_2:2150484-2150503 | Msa0904480:CDS | 60.0% | |
| CAGGGCCGTCAAACTGAAGC+GGG | + | chr6_2:2150492-2150511 | None:intergenic | 60.0% | |
| CCAGGGCCGTCAAACTGAAG+CGG | + | chr6_2:2150493-2150512 | None:intergenic | 60.0% | |
| GGCATTTGCACCAGGGTCCA+GGG | + | chr6_2:2150510-2150529 | None:intergenic | 60.0% | |
| TGGCATTTGCACCAGGGTCC+AGG | + | chr6_2:2150511-2150530 | None:intergenic | 60.0% | |
| TGCTGCAGGGCATGTAGTCC+TGG | + | chr6_2:2150559-2150578 | None:intergenic | 60.0% | |
| CCGTCAAACTGAAGCGGGCC+TGG | + | chr6_2:2150487-2150506 | None:intergenic | 65.0% | |
| CCGCTTCAGTTTGACGGCCC+TGG | - | chr6_2:2150490-2150509 | Msa0904480:CDS | 65.0% | |
| AGTTTGACGGCCCTGGACCC+TGG | - | chr6_2:2150497-2150516 | Msa0904480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2147088 | 2150591 | 2147088 | ID=Msa0904480;Name=Msa0904480 |
| chr6_2 | mRNA | 2147088 | 2150591 | 2147088 | ID=Msa0904480-mRNA-1;Parent=Msa0904480;Name=Msa0904480-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.25|0.66|0.5|4|0|333 |
| chr6_2 | exon | 2149978 | 2150591 | 2149978 | ID=Msa0904480-mRNA-1:exon:702;Parent=Msa0904480-mRNA-1 |
| chr6_2 | exon | 2149680 | 2149725 | 2149680 | ID=Msa0904480-mRNA-1:exon:701;Parent=Msa0904480-mRNA-1 |
| chr6_2 | exon | 2147484 | 2147665 | 2147484 | ID=Msa0904480-mRNA-1:exon:700;Parent=Msa0904480-mRNA-1 |
| chr6_2 | exon | 2147088 | 2147247 | 2147088 | ID=Msa0904480-mRNA-1:exon:699;Parent=Msa0904480-mRNA-1 |
| chr6_2 | CDS | 2149978 | 2150591 | 2149978 | ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1 |
| chr6_2 | CDS | 2149680 | 2149725 | 2149680 | ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1 |
| chr6_2 | CDS | 2147484 | 2147665 | 2147484 | ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1 |
| chr6_2 | CDS | 2147088 | 2147247 | 2147088 | ID=Msa0904480-mRNA-1:cds;Parent=Msa0904480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
