Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904990 | XP_013450953.1 | 98.561 | 278 | 3 | 1 | 1 | 278 | 1 | 277 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904990 | sp|Q00466|HAT7_ARATH | 52.365 | 296 | 101 | 12 | 1 | 271 | 22 | 302 | 3.66e-82 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0904990 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904990 | MtrunA17_Chr6g0453021 | 98.561 | 278 | 3 | 1 | 1 | 278 | 1 | 277 | 0.0 | 565 |
| Msa0904990 | MtrunA17_Chr7g0217111 | 59.589 | 292 | 76 | 10 | 1 | 270 | 1 | 272 | 4.50e-106 | 309 |
| Msa0904990 | MtrunA17_Chr8g0362151 | 50.831 | 301 | 98 | 9 | 1 | 273 | 1 | 279 | 4.03e-80 | 243 |
| Msa0904990 | MtrunA17_Chr5g0416391 | 53.725 | 255 | 76 | 6 | 49 | 273 | 38 | 280 | 4.71e-72 | 223 |
| Msa0904990 | MtrunA17_Chr5g0415941 | 44.215 | 242 | 93 | 10 | 42 | 260 | 39 | 261 | 6.52e-40 | 141 |
| Msa0904990 | MtrunA17_Chr3g0119291 | 45.960 | 198 | 92 | 4 | 83 | 266 | 42 | 238 | 8.08e-40 | 139 |
| Msa0904990 | MtrunA17_Chr8g0381741 | 60.748 | 107 | 41 | 1 | 87 | 192 | 43 | 149 | 3.99e-37 | 133 |
| Msa0904990 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 93 | 192 | 63 | 162 | 1.69e-36 | 131 |
| Msa0904990 | MtrunA17_Chr3g0123691 | 54.032 | 124 | 48 | 1 | 78 | 192 | 32 | 155 | 5.95e-36 | 130 |
| Msa0904990 | MtrunA17_Chr8g0362751 | 68.750 | 96 | 30 | 0 | 97 | 192 | 89 | 184 | 9.35e-36 | 129 |
| Msa0904990 | MtrunA17_Chr4g0060031 | 57.143 | 112 | 48 | 0 | 81 | 192 | 79 | 190 | 1.37e-34 | 127 |
| Msa0904990 | MtrunA17_Chr7g0265521 | 55.435 | 92 | 41 | 0 | 96 | 187 | 62 | 153 | 3.59e-28 | 108 |
| Msa0904990 | MtrunA17_Chr3g0127511 | 56.044 | 91 | 40 | 0 | 99 | 189 | 40 | 130 | 7.79e-28 | 107 |
| Msa0904990 | MtrunA17_Chr1g0179581 | 60.494 | 81 | 32 | 0 | 96 | 176 | 27 | 107 | 1.65e-26 | 100 |
| Msa0904990 | MtrunA17_Chr8g0346251 | 53.488 | 86 | 40 | 0 | 104 | 189 | 48 | 133 | 1.69e-25 | 101 |
| Msa0904990 | MtrunA17_Chr4g0055851 | 46.154 | 104 | 55 | 1 | 81 | 184 | 105 | 207 | 2.61e-20 | 88.2 |
| Msa0904990 | MtrunA17_Chr5g0403701 | 51.579 | 95 | 46 | 0 | 97 | 191 | 53 | 147 | 9.91e-20 | 85.1 |
| Msa0904990 | MtrunA17_Chr5g0403691 | 51.064 | 94 | 46 | 0 | 97 | 190 | 53 | 146 | 2.40e-19 | 84.3 |
| Msa0904990 | MtrunA17_Chr2g0308611 | 42.276 | 123 | 48 | 2 | 84 | 190 | 171 | 286 | 7.81e-18 | 82.0 |
| Msa0904990 | MtrunA17_Chr5g0400781 | 46.154 | 104 | 49 | 1 | 87 | 190 | 113 | 209 | 1.65e-17 | 80.1 |
| Msa0904990 | MtrunA17_Chr7g0258831 | 39.726 | 146 | 77 | 3 | 45 | 190 | 112 | 246 | 1.92e-17 | 80.5 |
| Msa0904990 | MtrunA17_Chr5g0399491 | 46.000 | 100 | 53 | 1 | 85 | 184 | 125 | 223 | 2.21e-17 | 80.1 |
| Msa0904990 | MtrunA17_Chr1g0151971 | 50.000 | 94 | 40 | 1 | 97 | 190 | 130 | 216 | 7.95e-17 | 78.6 |
| Msa0904990 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 100 | 190 | 91 | 174 | 1.06e-16 | 77.0 |
| Msa0904990 | MtrunA17_Chr4g0054421 | 45.192 | 104 | 49 | 2 | 87 | 190 | 118 | 213 | 1.10e-16 | 77.8 |
| Msa0904990 | MtrunA17_Chr8g0335131 | 48.864 | 88 | 45 | 0 | 97 | 184 | 146 | 233 | 1.29e-16 | 78.2 |
| Msa0904990 | MtrunA17_Chr1g0175651 | 44.348 | 115 | 51 | 3 | 76 | 190 | 139 | 240 | 1.47e-16 | 77.8 |
| Msa0904990 | MtrunA17_Chr4g0044091 | 50.000 | 88 | 44 | 0 | 97 | 184 | 65 | 152 | 5.42e-16 | 74.7 |
| Msa0904990 | MtrunA17_Chr3g0135331 | 38.136 | 118 | 58 | 2 | 97 | 199 | 145 | 262 | 9.23e-14 | 70.1 |
| Msa0904990 | MtrunA17_Chr2g0299031 | 43.182 | 88 | 50 | 0 | 97 | 184 | 82 | 169 | 2.03e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0904990 | AT5G15150.1 | 52.365 | 296 | 101 | 12 | 1 | 271 | 22 | 302 | 3.72e-83 | 252 |
| Msa0904990 | AT3G01220.1 | 48.958 | 288 | 102 | 10 | 1 | 271 | 16 | 275 | 1.35e-79 | 242 |
| Msa0904990 | AT1G69780.1 | 46.580 | 307 | 112 | 10 | 1 | 275 | 7 | 293 | 2.23e-68 | 214 |
| Msa0904990 | AT1G26960.1 | 50.235 | 213 | 86 | 5 | 74 | 275 | 51 | 254 | 1.10e-58 | 188 |
| Msa0904990 | AT5G65310.1 | 53.846 | 143 | 55 | 2 | 81 | 212 | 52 | 194 | 2.86e-39 | 139 |
| Msa0904990 | AT5G65310.2 | 53.846 | 143 | 55 | 2 | 81 | 212 | 34 | 176 | 2.87e-39 | 139 |
| Msa0904990 | AT2G22430.1 | 64.078 | 103 | 37 | 0 | 90 | 192 | 55 | 157 | 1.55e-38 | 137 |
| Msa0904990 | AT4G40060.1 | 63.636 | 99 | 36 | 0 | 94 | 192 | 56 | 154 | 8.10e-38 | 135 |
| Msa0904990 | AT3G01470.1 | 62.000 | 100 | 38 | 0 | 93 | 192 | 64 | 163 | 2.76e-37 | 133 |
| Msa0904990 | AT2G46680.1 | 55.319 | 94 | 42 | 0 | 98 | 191 | 33 | 126 | 6.39e-29 | 111 |
| Msa0904990 | AT3G61890.1 | 55.556 | 90 | 40 | 0 | 100 | 189 | 33 | 122 | 3.72e-27 | 105 |
| Msa0904990 | AT1G27045.1 | 35.814 | 215 | 98 | 6 | 9 | 217 | 12 | 192 | 6.13e-27 | 105 |
| Msa0904990 | AT2G46680.2 | 54.545 | 88 | 40 | 0 | 98 | 185 | 33 | 120 | 1.91e-26 | 104 |
| Msa0904990 | AT1G27045.5 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 1.01e-25 | 100 |
| Msa0904990 | AT1G27045.3 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 1.01e-25 | 100 |
| Msa0904990 | AT1G27045.2 | 46.400 | 125 | 63 | 1 | 97 | 217 | 17 | 141 | 1.09e-25 | 100 |
| Msa0904990 | AT1G27045.4 | 37.297 | 185 | 80 | 5 | 9 | 191 | 12 | 162 | 2.27e-25 | 101 |
| Msa0904990 | AT5G03790.1 | 46.847 | 111 | 56 | 2 | 97 | 205 | 77 | 186 | 7.72e-24 | 97.1 |
| Msa0904990 | AT2G18550.1 | 43.357 | 143 | 64 | 3 | 97 | 222 | 61 | 203 | 1.60e-22 | 93.2 |
| Msa0904990 | AT2G36610.1 | 44.348 | 115 | 53 | 3 | 96 | 199 | 70 | 184 | 4.10e-22 | 91.3 |
| Msa0904990 | AT5G03790.2 | 49.462 | 93 | 40 | 1 | 97 | 189 | 77 | 162 | 4.63e-22 | 91.3 |
| Msa0904990 | AT4G36740.1 | 52.222 | 90 | 43 | 0 | 97 | 186 | 55 | 144 | 8.26e-21 | 88.6 |
| Msa0904990 | AT4G36740.2 | 52.222 | 90 | 43 | 0 | 97 | 186 | 56 | 145 | 8.52e-21 | 88.6 |
| Msa0904990 | AT5G66700.1 | 47.573 | 103 | 52 | 1 | 86 | 186 | 58 | 160 | 6.39e-20 | 86.3 |
| Msa0904990 | AT5G53980.1 | 46.000 | 100 | 54 | 0 | 88 | 187 | 2 | 101 | 8.05e-20 | 84.3 |
| Msa0904990 | AT2G01430.1 | 45.045 | 111 | 53 | 2 | 80 | 190 | 123 | 225 | 1.31e-18 | 83.6 |
| Msa0904990 | AT4G37790.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 118 | 212 | 8.90e-18 | 81.6 |
| Msa0904990 | AT5G47370.1 | 41.322 | 121 | 56 | 2 | 81 | 190 | 103 | 219 | 4.49e-17 | 79.7 |
| Msa0904990 | AT2G22800.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 105 | 199 | 4.59e-17 | 79.3 |
| Msa0904990 | AT4G17460.1 | 46.667 | 105 | 51 | 2 | 87 | 190 | 124 | 224 | 6.34e-17 | 79.3 |
| Msa0904990 | AT3G60390.1 | 41.322 | 121 | 69 | 2 | 64 | 184 | 131 | 249 | 7.41e-17 | 79.3 |
| Msa0904990 | AT5G06710.1 | 42.188 | 128 | 68 | 2 | 70 | 195 | 161 | 284 | 1.98e-16 | 78.6 |
| Msa0904990 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 97 | 184 | 163 | 250 | 2.18e-15 | 75.1 |
| Msa0904990 | AT4G16780.1 | 43.878 | 98 | 53 | 1 | 87 | 184 | 121 | 216 | 5.47e-15 | 73.6 |
| Msa0904990 | AT1G70920.1 | 48.864 | 88 | 45 | 0 | 97 | 184 | 69 | 156 | 3.00e-14 | 70.5 |
| Msa0904990 | AT1G70920.2 | 48.864 | 88 | 45 | 0 | 97 | 184 | 39 | 126 | 3.94e-14 | 69.3 |
| Msa0904990 | AT2G01430.2 | 48.571 | 70 | 35 | 1 | 80 | 149 | 123 | 191 | 1.99e-12 | 65.5 |
| Msa0904990 | AT5G06710.4 | 44.444 | 81 | 43 | 1 | 70 | 148 | 161 | 241 | 9.88e-11 | 61.2 |
Find 74 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTTGCTCTTCTATTT+TGG | 0.086155 | 6_2:+2757984 | None:intergenic |
| CAAAATTATAAGTTAAATTT+TGG | 0.108889 | 6_2:-2755608 | None:intergenic |
| ATTTGGATTCCGAATAATTT+AGG | 0.166244 | 6_2:-2755817 | Msa0904990:three_prime_UTR |
| TAAAATATTAGATTTGAATT+TGG | 0.167679 | 6_2:+2755928 | None:intergenic |
| TTGATGAGCAGCAGAGTTTA+TGG | 0.202182 | 6_2:-2756182 | Msa0904990:CDS |
| AAAAGGGATTGCTTTGAAAA+TGG | 0.232266 | 6_2:-2756390 | Msa0904990:CDS |
| GTCTGAATACAAGAGGAATT+TGG | 0.245505 | 6_2:-2755834 | Msa0904990:three_prime_UTR |
| TCAGCATTTGTTTGGATAAT+CGG | 0.267516 | 6_2:-2755889 | Msa0904990:three_prime_UTR |
| GGTATAGCTATAAAGCTATA+AGG | 0.274605 | 6_2:+2758821 | None:intergenic |
| AATAAAATTCAGCATTTGTT+TGG | 0.279943 | 6_2:-2755897 | Msa0904990:three_prime_UTR |
| ATGCAATTGGCTAAAGCTTT+GGG | 0.280624 | 6_2:-2758037 | Msa0904990:CDS |
| ATCCTTTCTTCGAGTCTTAA+CGG | 0.311677 | 6_2:+2756130 | None:intergenic |
| CCACCTCATCAACACTTTCA+AGG | 0.311971 | 6_2:-2758617 | Msa0904990:intron |
| CTTGTAGGCTTAAGTGAATT+TGG | 0.316425 | 6_2:+2756279 | None:intergenic |
| TTTGGATTCCGAATAATTTA+GGG | 0.325047 | 6_2:-2755816 | Msa0904990:three_prime_UTR |
| AGCAGCAGAGTTTATGGCCT+TGG | 0.338430 | 6_2:-2756176 | Msa0904990:CDS |
| GAAGCAATTTGATTCTCTTA+AGG | 0.348897 | 6_2:-2757924 | Msa0904990:CDS |
| CAATTTATGTTTGTGTAGAT+TGG | 0.354618 | 6_2:-2755726 | Msa0904990:three_prime_UTR |
| GTGAACATCAATGAATATTT+CGG | 0.362591 | 6_2:-2756035 | Msa0904990:three_prime_UTR |
| TCTTCGAGTCTTAACGGAAT+TGG | 0.375678 | 6_2:+2756136 | None:intergenic |
| AATGCAATTGGCTAAAGCTT+TGG | 0.380110 | 6_2:-2758038 | Msa0904990:CDS |
| CTGATCTTGAAGAGCATTGA+AGG | 0.381692 | 6_2:+2756244 | None:intergenic |
| AACCTAGACAAGTAGCTATA+TGG | 0.403297 | 6_2:-2758009 | Msa0904990:CDS |
| AGGAGCTGTGTCATGCTTGT+AGG | 0.404646 | 6_2:+2756264 | None:intergenic |
| GTGAATTTGGTGTTCTAGAA+AGG | 0.404843 | 6_2:+2756292 | None:intergenic |
| GATGGTCATTCGTTCAAGAT+TGG | 0.422092 | 6_2:-2755956 | Msa0904990:three_prime_UTR |
| AGCTACAAACTCTAAAGAAA+AGG | 0.434526 | 6_2:-2756407 | Msa0904990:CDS |
| TGAAGAAGGGTACTCACAAA+TGG | 0.439119 | 6_2:-2758149 | Msa0904990:CDS |
| TTCTTCTTCAACTTCTACCA+TGG | 0.441834 | 6_2:-2758744 | Msa0904990:exon |
| GTATAGCTATAAAGCTATAA+GGG | 0.453583 | 6_2:+2758822 | None:intergenic |
| TTCCGTTAAGACTCGAAGAA+AGG | 0.456253 | 6_2:-2756132 | Msa0904990:exon |
| TCGCATTCACTCACTCAATC+AGG | 0.467669 | 6_2:-2755984 | Msa0904990:three_prime_UTR |
| GGCTGATAATGACACACTTA+AGG | 0.472252 | 6_2:-2757903 | Msa0904990:CDS |
| TGTTGATGAGGTGGAAAGGA+AGG | 0.483232 | 6_2:+2758626 | None:intergenic |
| GCTACAAACTCTAAAGAAAA+GGG | 0.494292 | 6_2:-2756406 | Msa0904990:CDS |
| GATCAATTATCAGATGAAGA+AGG | 0.500107 | 6_2:-2758163 | Msa0904990:CDS |
| ATGAGGTGGAAAGGAAGGAT+AGG | 0.501061 | 6_2:+2758631 | None:intergenic |
| TGCGAGCTATTTCTGACTGC+AGG | 0.513537 | 6_2:+2756002 | None:intergenic |
| TAAAATAAAGTGTAAGGGAA+AGG | 0.524543 | 6_2:+2755637 | None:intergenic |
| AATGAAGGTTCTTGGAGCAA+TGG | 0.528783 | 6_2:-2756345 | Msa0904990:CDS |
| CTGACAGAGTATTCAGAAAG+AGG | 0.529233 | 6_2:+2758975 | None:intergenic |
| CTCTATGCCTGAAAATGACA+TGG | 0.537665 | 6_2:+2758237 | None:intergenic |
| GCTGGTACTGATATGATGAT+AGG | 0.541839 | 6_2:+2759002 | None:intergenic |
| GAAGAAGGGTACTCACAAAT+GGG | 0.542302 | 6_2:-2758148 | Msa0904990:CDS |
| GACATTTGAAATATCGATGG+TGG | 0.543022 | 6_2:+2755854 | None:intergenic |
| TAGTATATAGTATAATATAG+AGG | 0.546588 | 6_2:+2758884 | None:intergenic |
| TATTCAGAAAGAGGGATGGC+TGG | 0.547505 | 6_2:+2758984 | None:intergenic |
| ATCAATTATCAGATGAAGAA+GGG | 0.550627 | 6_2:-2758162 | Msa0904990:CDS |
| TTCAAATGTCTGAATACAAG+AGG | 0.558847 | 6_2:-2755841 | Msa0904990:three_prime_UTR |
| GTCATTCGTTCAAGATTGGA+CGG | 0.566902 | 6_2:-2755952 | Msa0904990:three_prime_UTR |
| TGCAATTGGCTAAAGCTTTG+GGG | 0.570828 | 6_2:-2758036 | Msa0904990:CDS |
| AACCATATAGCTACTTGTCT+AGG | 0.577432 | 6_2:+2758007 | None:intergenic |
| AAGATGAAAGTATGAGAAGG+TGG | 0.578267 | 6_2:+2758716 | None:intergenic |
| TCAGACATTTGAAATATCGA+TGG | 0.585798 | 6_2:+2755851 | None:intergenic |
| TATTAGAATTATTCATGCAA+AGG | 0.590726 | 6_2:+2758800 | None:intergenic |
| ATTGTAGGTAGTGGAAGTAA+TGG | 0.594104 | 6_2:-2758286 | Msa0904990:intron |
| AAATGGGTGAAAAGAAGAAG+AGG | 0.594234 | 6_2:-2758132 | Msa0904990:CDS |
| ATTTCTGACTGCAGGAGAGT+CGG | 0.595893 | 6_2:+2756010 | None:intergenic |
| TGAAAGATGAAAGTATGAGA+AGG | 0.596872 | 6_2:+2758713 | None:intergenic |
| CCTTGAAAGTGTTGATGAGG+TGG | 0.603326 | 6_2:+2758617 | None:intergenic |
| AAACAACAAATTACATGCAG+AGG | 0.604512 | 6_2:-2757876 | Msa0904990:intron |
| AATCTATTTGAGTCATGAAG+AGG | 0.607100 | 6_2:-2755686 | Msa0904990:three_prime_UTR |
| GTAGGTAGTGGAAGTAATGG+TGG | 0.615975 | 6_2:-2758283 | Msa0904990:intron |
| TGACAGAGTATTCAGAAAGA+GGG | 0.620131 | 6_2:+2758976 | None:intergenic |
| ATGAGAAGGTGGAAAAGCCA+TGG | 0.623402 | 6_2:+2758727 | None:intergenic |
| CTATTTGAGTCATGAAGAGG+TGG | 0.625626 | 6_2:-2755683 | Msa0904990:three_prime_UTR |
| TCACTCAATCAGGATATCGA+TGG | 0.645152 | 6_2:-2755974 | Msa0904990:three_prime_UTR |
| GGTTCCAAAATAGAAGAGCA+AGG | 0.645595 | 6_2:-2757988 | Msa0904990:CDS |
| AAAGTGTTGATGAGGTGGAA+AGG | 0.650161 | 6_2:+2758622 | None:intergenic |
| AGAGTATTCAGAAAGAGGGA+TGG | 0.662604 | 6_2:+2758980 | None:intergenic |
| AAGTGTGATGAATTAGTGCA+TGG | 0.667963 | 6_2:-2758193 | Msa0904990:CDS |
| TGACCTTGAAAGTGTTGATG+AGG | 0.676035 | 6_2:+2758614 | None:intergenic |
| TGTTGCTGATGATCAGTCCA+AGG | 0.684041 | 6_2:+2756159 | None:intergenic |
| TCCAAAATAGAAGAGCAAGG+TGG | 0.719995 | 6_2:-2757985 | Msa0904990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAATAAATTGTATTTTT+TGG | - | chr6_2:2757207-2757226 | Msa0904990:intron | 10.0% |
| !! | ATCAAAATAAAATAAAAGTT+TGG | + | chr6_2:2757477-2757496 | None:intergenic | 10.0% |
| !! | TAAAATATTAGATTTGAATT+TGG | + | chr6_2:2758747-2758766 | None:intergenic | 10.0% |
| !! | AAAAATAAAATAAAGTGTAA+GGG | + | chr6_2:2759043-2759062 | None:intergenic | 10.0% |
| !! | TAGTATATAGTATAATATAG+AGG | + | chr6_2:2755791-2755810 | None:intergenic | 15.0% |
| !!! | CTTTGAAAAAAGTTTATTTT+TGG | + | chr6_2:2756303-2756322 | None:intergenic | 15.0% |
| !!! | ATTAGTCATTTTCAATAAAA+TGG | - | chr6_2:2757067-2757086 | Msa0904990:intron | 15.0% |
| !! | AAGAATAAAAAATTGGATAT+TGG | + | chr6_2:2757181-2757200 | None:intergenic | 15.0% |
| !!! | ATTGTATTTTTTGGAAATAA+AGG | - | chr6_2:2757216-2757235 | Msa0904990:intron | 15.0% |
| !! | TAATTTGAATTAGTTATAAG+AGG | - | chr6_2:2757536-2757555 | Msa0904990:intron | 15.0% |
| !! | TCTTTAAATCATTTATATTG+CGG | + | chr6_2:2758084-2758103 | None:intergenic | 15.0% |
| !!! | ATTTTTTAACCAAGTTAAAA+AGG | - | chr6_2:2758597-2758616 | Msa0904990:intron | 15.0% |
| !! | CAAAAATAAAATAAAGTGTA+AGG | + | chr6_2:2759044-2759063 | None:intergenic | 15.0% |
| !! | TATTAGAATTATTCATGCAA+AGG | + | chr6_2:2755875-2755894 | None:intergenic | 20.0% |
| !!! | AAATATTGATGTTTTTGCAA+CGG | + | chr6_2:2756196-2756215 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGTTTGTTATTGT+AGG | - | chr6_2:2756371-2756390 | Msa0904990:CDS | 20.0% |
| !!! | AATCAAGAAAGAAATTTTAG+AGG | + | chr6_2:2756964-2756983 | None:intergenic | 20.0% |
| !! | AAAGAAGACTTTGATTAATT+TGG | - | chr6_2:2757015-2757034 | Msa0904990:intron | 20.0% |
| !! | CATCTTCAAGAATAAAAAAT+TGG | + | chr6_2:2757188-2757207 | None:intergenic | 20.0% |
| !! | GTTAATTACACATTCATTAT+TGG | + | chr6_2:2757422-2757441 | None:intergenic | 20.0% |
| !!! | TGATTTAAAGATTTTTGCAA+CGG | - | chr6_2:2758093-2758112 | Msa0904990:CDS | 20.0% |
| !!! | GGTATTTTCCTATAATATAA+AGG | - | chr6_2:2758137-2758156 | Msa0904990:CDS | 20.0% |
| !!! | AACCTTCATTTTCTTTTTTT+AGG | + | chr6_2:2758317-2758336 | None:intergenic | 20.0% |
| !! | AATAAAATTCAGCATTTGTT+TGG | - | chr6_2:2758775-2758794 | Msa0904990:five_prime_UTR | 20.0% |
| !! | AAAGAAAAAAGAAACTGATA+GGG | + | chr6_2:2758926-2758945 | None:intergenic | 20.0% |
| !! | GAATGATTTAAGAGAGTTTT+TGG | + | chr6_2:2755752-2755771 | None:intergenic | 25.0% |
| ! | GTATAGCTATAAAGCTATAA+GGG | + | chr6_2:2755853-2755872 | None:intergenic | 25.0% |
| ! | AGAAGAAAAAGAAAAGGATA+TGG | + | chr6_2:2755915-2755934 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAGAAAAAGAAA+AGG | + | chr6_2:2755921-2755940 | None:intergenic | 25.0% |
| ! | AGAAAAATCTTTATAGTCAG+TGG | - | chr6_2:2756321-2756340 | Msa0904990:CDS | 25.0% |
| ! | ATCAATTATCAGATGAAGAA+GGG | - | chr6_2:2756510-2756529 | Msa0904990:intron | 25.0% |
| !! | ACTTTGATTAATTTGGATCT+TGG | - | chr6_2:2757022-2757041 | Msa0904990:intron | 25.0% |
| !! | TTGGTGGTTAATTAATTAAC+TGG | - | chr6_2:2757041-2757060 | Msa0904990:intron | 25.0% |
| ! | TGGTGGTTAATTAATTAACT+GGG | - | chr6_2:2757042-2757061 | Msa0904990:intron | 25.0% |
| ! | GGAAAATATGAAAAACTATG+AGG | + | chr6_2:2757281-2757300 | None:intergenic | 25.0% |
| ! | AAATCAAAGTCTATATCAAG+GGG | + | chr6_2:2757303-2757322 | None:intergenic | 25.0% |
| ! | CAAATCAAAGTCTATATCAA+GGG | + | chr6_2:2757304-2757323 | None:intergenic | 25.0% |
| ! | TCAAATCAAAGTCTATATCA+AGG | + | chr6_2:2757305-2757324 | None:intergenic | 25.0% |
| ! | TAAATGATTAAAACCTTCAG+TGG | + | chr6_2:2757374-2757393 | None:intergenic | 25.0% |
| ! | ATTGAGCTTTCTTAGTAAAT+AGG | + | chr6_2:2757581-2757600 | None:intergenic | 25.0% |
| ! | ATTGTTAGTTGATCATTCAT+AGG | - | chr6_2:2757683-2757702 | Msa0904990:intron | 25.0% |
| !! | CATACCATGATTTTAAATTG+CGG | - | chr6_2:2757886-2757905 | Msa0904990:CDS | 25.0% |
| !!! | AGTTCTAAGCATTTATATTG+CGG | - | chr6_2:2757919-2757938 | Msa0904990:CDS | 25.0% |
| !! | GAGACCTCTAAAAAAATTTA+TGG | - | chr6_2:2757981-2758000 | Msa0904990:CDS | 25.0% |
| ! | AGCCTAAAAAAAGAAAATGA+AGG | - | chr6_2:2758312-2758331 | Msa0904990:intron | 25.0% |
| ! | AAAAAGAAAATGAAGGTTCT+TGG | - | chr6_2:2758319-2758338 | Msa0904990:intron | 25.0% |
| !!! | GTAATTCATCCTTTTTAACT+TGG | + | chr6_2:2758609-2758628 | None:intergenic | 25.0% |
| ! | GTGAACATCAATGAATATTT+CGG | - | chr6_2:2758637-2758656 | Msa0904990:CDS | 25.0% |
| ! | ATTTGGATTCCGAATAATTT+AGG | - | chr6_2:2758855-2758874 | Msa0904990:five_prime_UTR | 25.0% |
| ! | TTTGGATTCCGAATAATTTA+GGG | - | chr6_2:2758856-2758875 | Msa0904990:five_prime_UTR | 25.0% |
| !!! | CATTTTAGCCCTAAATTATT+CGG | + | chr6_2:2758867-2758886 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAAGAAACTGAT+AGG | + | chr6_2:2758927-2758946 | None:intergenic | 25.0% |
| ! | CAATTTATGTTTGTGTAGAT+TGG | - | chr6_2:2758946-2758965 | Msa0904990:five_prime_UTR | 25.0% |
| ! | TAAAATAAAGTGTAAGGGAA+AGG | + | chr6_2:2759038-2759057 | None:intergenic | 25.0% |
| GGTATAGCTATAAAGCTATA+AGG | + | chr6_2:2755854-2755873 | None:intergenic | 30.0% | |
| ! | TGAAAGATGAAAGTATGAGA+AGG | + | chr6_2:2755962-2755981 | None:intergenic | 30.0% |
| AAAAGTTTGCAACGTAACTT+CGG | + | chr6_2:2756125-2756144 | None:intergenic | 30.0% | |
| !! | AATCACAATTTTGACCACAT+CGG | + | chr6_2:2756167-2756186 | None:intergenic | 30.0% |
| !! | TTGTTTGTTATTGTAGGTAG+TGG | - | chr6_2:2756377-2756396 | Msa0904990:CDS | 30.0% |
| GATCAATTATCAGATGAAGA+AGG | - | chr6_2:2756509-2756528 | Msa0904990:intron | 30.0% | |
| GAAGCAATTTGATTCTCTTA+AGG | - | chr6_2:2756748-2756767 | Msa0904990:intron | 30.0% | |
| AAACAACAAATTACATGCAG+AGG | - | chr6_2:2756796-2756815 | Msa0904990:intron | 30.0% | |
| ! | TTGATTAATTTGGATCTTGG+TGG | - | chr6_2:2757025-2757044 | Msa0904990:intron | 30.0% |
| ! | AGAAGACTTTTCTTTCACTT+TGG | - | chr6_2:2757240-2757259 | Msa0904990:intron | 30.0% |
| AATCAAAGTCTATATCAAGG+GGG | + | chr6_2:2757302-2757321 | None:intergenic | 30.0% | |
| ATTTGATGTGTGTTTGTGAA+TGG | - | chr6_2:2757319-2757338 | Msa0904990:intron | 30.0% | |
| AAAAGTCATAAAGACCATGT+GGG | + | chr6_2:2757624-2757643 | None:intergenic | 30.0% | |
| AAAAAGTCATAAAGACCATG+TGG | + | chr6_2:2757625-2757644 | None:intergenic | 30.0% | |
| GAATGATCAACTAACAATCA+AGG | + | chr6_2:2757681-2757700 | None:intergenic | 30.0% | |
| CACTATTAAATTTGCAGTTC+TGG | + | chr6_2:2757729-2757748 | None:intergenic | 30.0% | |
| !! | TTGTCTTTTTCATAGCAACA+TGG | + | chr6_2:2757794-2757813 | None:intergenic | 30.0% |
| ATGTTGCTATGAAAAAGACA+AGG | - | chr6_2:2757793-2757812 | Msa0904990:intron | 30.0% | |
| !!! | GGTGCCATAAATTTTTTTAG+AGG | + | chr6_2:2757988-2758007 | None:intergenic | 30.0% |
| GTTGCAAGCCTTTATATTAT+AGG | + | chr6_2:2758148-2758167 | None:intergenic | 30.0% | |
| ! | AGCTACAAACTCTAAAGAAA+AGG | - | chr6_2:2758265-2758284 | Msa0904990:CDS | 30.0% |
| ! | GCTACAAACTCTAAAGAAAA+GGG | - | chr6_2:2758266-2758285 | Msa0904990:CDS | 30.0% |
| !! | AAAAGGGATTGCTTTGAAAA+TGG | - | chr6_2:2758282-2758301 | Msa0904990:CDS | 30.0% |
| TCAGCATTTGTTTGGATAAT+CGG | - | chr6_2:2758783-2758802 | Msa0904990:five_prime_UTR | 30.0% | |
| ! | TCAGACATTTGAAATATCGA+TGG | + | chr6_2:2758824-2758843 | None:intergenic | 30.0% |
| TTCAAATGTCTGAATACAAG+AGG | - | chr6_2:2758831-2758850 | Msa0904990:five_prime_UTR | 30.0% | |
| AAGAAACTGATAGGGAAAAA+AGG | + | chr6_2:2758918-2758937 | None:intergenic | 30.0% | |
| AATCTATTTGAGTCATGAAG+AGG | - | chr6_2:2758986-2759005 | Msa0904990:five_prime_UTR | 30.0% | |
| AGATAGAGAGAGAGAGAATA+AGG | + | chr6_2:2755614-2755633 | None:intergenic | 35.0% | |
| ! | TGACAGAGTATTCAGAAAGA+GGG | + | chr6_2:2755699-2755718 | None:intergenic | 35.0% |
| !! | GTTTTTGGATCAGAAGAGTT+TGG | + | chr6_2:2755737-2755756 | None:intergenic | 35.0% |
| TTCTTCTTCAACTTCTACCA+TGG | - | chr6_2:2755928-2755947 | Msa0904990:three_prime_UTR | 35.0% | |
| ! | AAGATGAAAGTATGAGAAGG+TGG | + | chr6_2:2755959-2755978 | None:intergenic | 35.0% |
| GAAAAAAAGTTAGACCGATG+TGG | - | chr6_2:2756150-2756169 | Msa0904990:CDS | 35.0% | |
| !! | ATTGTAGGTAGTGGAAGTAA+TGG | - | chr6_2:2756386-2756405 | Msa0904990:CDS | 35.0% |
| !!! | AAGAGATCCATGTCATTTTC+AGG | - | chr6_2:2756428-2756447 | Msa0904990:intron | 35.0% |
| AAGTGTGATGAATTAGTGCA+TGG | - | chr6_2:2756479-2756498 | Msa0904990:intron | 35.0% | |
| AAATGGGTGAAAAGAAGAAG+AGG | - | chr6_2:2756540-2756559 | Msa0904990:intron | 35.0% | |
| !!! | CTTGAGAAGAGTTTTGAGAT+TGG | - | chr6_2:2756587-2756606 | Msa0904990:intron | 35.0% |
| ACCTGAGAGAAAAATGCAAT+TGG | - | chr6_2:2756622-2756641 | Msa0904990:intron | 35.0% | |
| AATGCAATTGGCTAAAGCTT+TGG | - | chr6_2:2756634-2756653 | Msa0904990:intron | 35.0% | |
| ATGCAATTGGCTAAAGCTTT+GGG | - | chr6_2:2756635-2756654 | Msa0904990:intron | 35.0% | |
| AACCTAGACAAGTAGCTATA+TGG | - | chr6_2:2756663-2756682 | Msa0904990:intron | 35.0% | |
| AACCATATAGCTACTTGTCT+AGG | + | chr6_2:2756668-2756687 | None:intergenic | 35.0% | |
| CACATTCATTATTGGAGACA+AGG | + | chr6_2:2757414-2757433 | None:intergenic | 35.0% | |
| GATTTAGTTATGATCCCACA+TGG | - | chr6_2:2757607-2757626 | Msa0904990:intron | 35.0% | |
| TTAGTACATAGTTGTCCACA+TGG | - | chr6_2:2757831-2757850 | Msa0904990:intron | 35.0% | |
| ! | GCAACCGCAATTTAAAATCA+TGG | + | chr6_2:2757893-2757912 | None:intergenic | 35.0% |
| TCAAATCGAGGTCAAAATTG+TGG | + | chr6_2:2758175-2758194 | None:intergenic | 35.0% | |
| ATGCATATGCTTTCAAATCG+AGG | + | chr6_2:2758187-2758206 | None:intergenic | 35.0% | |
| !! | GTGAATTTGGTGTTCTAGAA+AGG | + | chr6_2:2758383-2758402 | None:intergenic | 35.0% |
| CTTGTAGGCTTAAGTGAATT+TGG | + | chr6_2:2758396-2758415 | None:intergenic | 35.0% | |
| ATCCTTTCTTCGAGTCTTAA+CGG | + | chr6_2:2758545-2758564 | None:intergenic | 35.0% | |
| ! | GACATTTGAAATATCGATGG+TGG | + | chr6_2:2758821-2758840 | None:intergenic | 35.0% |
| GTCTGAATACAAGAGGAATT+TGG | - | chr6_2:2758838-2758857 | Msa0904990:five_prime_UTR | 35.0% | |
| ! | AGGTACAGACAGCGATTTTT+AGG | + | chr6_2:2755653-2755672 | None:intergenic | 40.0% |
| !! | GCTGGTACTGATATGATGAT+AGG | + | chr6_2:2755673-2755692 | None:intergenic | 40.0% |
| ! | AGAGTATTCAGAAAGAGGGA+TGG | + | chr6_2:2755695-2755714 | None:intergenic | 40.0% |
| ! | CTGACAGAGTATTCAGAAAG+AGG | + | chr6_2:2755700-2755719 | None:intergenic | 40.0% |
| !! | AAAGTGTTGATGAGGTGGAA+AGG | + | chr6_2:2756053-2756072 | None:intergenic | 40.0% |
| !! | TGACCTTGAAAGTGTTGATG+AGG | + | chr6_2:2756061-2756080 | None:intergenic | 40.0% |
| AGAGAAGAGAGAAGATGTTG+TGG | + | chr6_2:2756260-2756279 | None:intergenic | 40.0% | |
| CTCTATGCCTGAAAATGACA+TGG | + | chr6_2:2756438-2756457 | None:intergenic | 40.0% | |
| !! | TGAAGAAGGGTACTCACAAA+TGG | - | chr6_2:2756523-2756542 | Msa0904990:intron | 40.0% |
| !! | GAAGAAGGGTACTCACAAAT+GGG | - | chr6_2:2756524-2756543 | Msa0904990:intron | 40.0% |
| ! | GCCAATTGCATTTTTCTCTC+AGG | + | chr6_2:2756626-2756645 | None:intergenic | 40.0% |
| TGCAATTGGCTAAAGCTTTG+GGG | - | chr6_2:2756636-2756655 | Msa0904990:intron | 40.0% | |
| GGTTCCAAAATAGAAGAGCA+AGG | - | chr6_2:2756684-2756703 | Msa0904990:intron | 40.0% | |
| TCCAAAATAGAAGAGCAAGG+TGG | - | chr6_2:2756687-2756706 | Msa0904990:intron | 40.0% | |
| ! | TCCACCTTGCTCTTCTATTT+TGG | + | chr6_2:2756691-2756710 | None:intergenic | 40.0% |
| ! | GGCTGATAATGACACACTTA+AGG | - | chr6_2:2756769-2756788 | Msa0904990:intron | 40.0% |
| TGATTAAAACCTTCAGTGGC+AGG | + | chr6_2:2757370-2757389 | None:intergenic | 40.0% | |
| CACTTTCATATGCTTCCATG+TGG | + | chr6_2:2757849-2757868 | None:intergenic | 40.0% | |
| ! | CACATGGAAGCATATGAAAG+TGG | - | chr6_2:2757847-2757866 | Msa0904990:intron | 40.0% |
| CTCTCGTAACATTGCAATTG+CGG | + | chr6_2:2757964-2757983 | None:intergenic | 40.0% | |
| AATGAAGGTTCTTGGAGCAA+TGG | - | chr6_2:2758327-2758346 | Msa0904990:intron | 40.0% | |
| !! | CTGATCTTGAAGAGCATTGA+AGG | + | chr6_2:2758431-2758450 | None:intergenic | 40.0% |
| TTGATGAGCAGCAGAGTTTA+TGG | - | chr6_2:2758490-2758509 | Msa0904990:intron | 40.0% | |
| TCTTCGAGTCTTAACGGAAT+TGG | + | chr6_2:2758539-2758558 | None:intergenic | 40.0% | |
| TTCCGTTAAGACTCGAAGAA+AGG | - | chr6_2:2758540-2758559 | Msa0904990:intron | 40.0% | |
| TCACTCAATCAGGATATCGA+TGG | - | chr6_2:2758698-2758717 | Msa0904990:CDS | 40.0% | |
| GATGGTCATTCGTTCAAGAT+TGG | - | chr6_2:2758716-2758735 | Msa0904990:CDS | 40.0% | |
| GTCATTCGTTCAAGATTGGA+CGG | - | chr6_2:2758720-2758739 | Msa0904990:CDS | 40.0% | |
| CTATTTGAGTCATGAAGAGG+TGG | - | chr6_2:2758989-2759008 | Msa0904990:five_prime_UTR | 40.0% | |
| TATTCAGAAAGAGGGATGGC+TGG | + | chr6_2:2755691-2755710 | None:intergenic | 45.0% | |
| ATGAGAAGGTGGAAAAGCCA+TGG | + | chr6_2:2755948-2755967 | None:intergenic | 45.0% | |
| ATGAGGTGGAAAGGAAGGAT+AGG | + | chr6_2:2756044-2756063 | None:intergenic | 45.0% | |
| ! | TGTTGATGAGGTGGAAAGGA+AGG | + | chr6_2:2756049-2756068 | None:intergenic | 45.0% |
| !! | CCTTGAAAGTGTTGATGAGG+TGG | + | chr6_2:2756058-2756077 | None:intergenic | 45.0% |
| CCACCTCATCAACACTTTCA+AGG | - | chr6_2:2756055-2756074 | Msa0904990:three_prime_UTR | 45.0% | |
| GAGAGAAGATGTTGTGGTCA+TGG | + | chr6_2:2756254-2756273 | None:intergenic | 45.0% | |
| !! | GTAGGTAGTGGAAGTAATGG+TGG | - | chr6_2:2756389-2756408 | Msa0904990:CDS | 45.0% |
| ! | ACAAGTTTTCCTGCCACTGA+AGG | - | chr6_2:2757358-2757377 | Msa0904990:intron | 45.0% |
| !! | AGTTCTGGATTCTGACACAC+TGG | + | chr6_2:2757714-2757733 | None:intergenic | 45.0% |
| ATTTATGGCACCCGCAACTA+CGG | - | chr6_2:2757996-2758015 | Msa0904990:CDS | 45.0% | |
| TTGTCCATAACCGTAGTTGC+GGG | + | chr6_2:2758009-2758028 | None:intergenic | 45.0% | |
| GTTGTCCATAACCGTAGTTG+CGG | + | chr6_2:2758010-2758029 | None:intergenic | 45.0% | |
| TATCCCAACTGCAATTGCGA+CGG | - | chr6_2:2758116-2758135 | Msa0904990:CDS | 45.0% | |
| ATACCGTCGCAATTGCAGTT+GGG | + | chr6_2:2758122-2758141 | None:intergenic | 45.0% | |
| AATACCGTCGCAATTGCAGT+TGG | + | chr6_2:2758123-2758142 | None:intergenic | 45.0% | |
| TGTTGCTGATGATCAGTCCA+AGG | + | chr6_2:2758516-2758535 | None:intergenic | 45.0% | |
| ATTTCTGACTGCAGGAGAGT+CGG | + | chr6_2:2758665-2758684 | None:intergenic | 45.0% | |
| TCGCATTCACTCACTCAATC+AGG | - | chr6_2:2758688-2758707 | Msa0904990:CDS | 45.0% | |
| !!! | TAAAAAATTTCATTTTAAAT+CGG | + | chr6_2:2758585-2758604 | None:intergenic | 5.0% |
| AGGAGCTGTGTCATGCTTGT+AGG | + | chr6_2:2758411-2758430 | None:intergenic | 50.0% | |
| AGCAGCAGAGTTTATGGCCT+TGG | - | chr6_2:2758496-2758515 | Msa0904990:intron | 50.0% | |
| !! | TGCGAGCTATTTCTGACTGC+AGG | + | chr6_2:2758673-2758692 | None:intergenic | 50.0% |
| GGCACCCGCAACTACGGTTA+TGG | - | chr6_2:2758002-2758021 | Msa0904990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 2755609 | 2759085 | 2755609 | ID=Msa0904990;Name=Msa0904990 |
| chr6_2 | mRNA | 2755609 | 2759085 | 2755609 | ID=Msa0904990-mRNA-1;Parent=Msa0904990;Name=Msa0904990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=338|1|1|1|1|1|3|537|278 |
| chr6_2 | exon | 2755609 | 2756427 | 2755609 | ID=Msa0904990-mRNA-1:exon:915;Parent=Msa0904990-mRNA-1 |
| chr6_2 | exon | 2757877 | 2758301 | 2757877 | ID=Msa0904990-mRNA-1:exon:914;Parent=Msa0904990-mRNA-1 |
| chr6_2 | exon | 2758618 | 2759085 | 2758618 | ID=Msa0904990-mRNA-1:exon:913;Parent=Msa0904990-mRNA-1 |
| chr6_2 | five_prime_UTR | 2758748 | 2759085 | 2758748 | ID=Msa0904990-mRNA-1:five_prime_utr;Parent=Msa0904990-mRNA-1 |
| chr6_2 | CDS | 2758618 | 2758747 | 2758618 | ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1 |
| chr6_2 | CDS | 2757877 | 2758301 | 2757877 | ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1 |
| chr6_2 | CDS | 2756146 | 2756427 | 2756146 | ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1 |
| chr6_2 | three_prime_UTR | 2755609 | 2756145 | 2755609 | ID=Msa0904990-mRNA-1:three_prime_utr;Parent=Msa0904990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
