AlfalfaGEDB | Msa0904990

M. sativa cultivar zhongmu-4 / Msa0904990

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904990	XP_013450953.1	98.561	278	3	1	1	278	1	277	0.0	565

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904990	sp\|Q00466\|HAT7_ARATH	52.365	296	101	12	1	271	22	302	3.66e-82	252

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0904990	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904990	MtrunA17_Chr6g0453021	98.561	278	3	1	1	278	1	277	0.0	565
Msa0904990	MtrunA17_Chr7g0217111	59.589	292	76	10	1	270	1	272	4.50e-106	309
Msa0904990	MtrunA17_Chr8g0362151	50.831	301	98	9	1	273	1	279	4.03e-80	243
Msa0904990	MtrunA17_Chr5g0416391	53.725	255	76	6	49	273	38	280	4.71e-72	223
Msa0904990	MtrunA17_Chr5g0415941	44.215	242	93	10	42	260	39	261	6.52e-40	141
Msa0904990	MtrunA17_Chr3g0119291	45.960	198	92	4	83	266	42	238	8.08e-40	139
Msa0904990	MtrunA17_Chr8g0381741	60.748	107	41	1	87	192	43	149	3.99e-37	133
Msa0904990	MtrunA17_Chr6g0450991	64.000	100	36	0	93	192	63	162	1.69e-36	131
Msa0904990	MtrunA17_Chr3g0123691	54.032	124	48	1	78	192	32	155	5.95e-36	130
Msa0904990	MtrunA17_Chr8g0362751	68.750	96	30	0	97	192	89	184	9.35e-36	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0904990	AT5G15150.1	52.365	296	101	12	1	271	22	302	3.72e-83	252
Msa0904990	AT3G01220.1	48.958	288	102	10	1	271	16	275	1.35e-79	242
Msa0904990	AT1G69780.1	46.580	307	112	10	1	275	7	293	2.23e-68	214
Msa0904990	AT1G26960.1	50.235	213	86	5	74	275	51	254	1.10e-58	188
Msa0904990	AT5G65310.1	53.846	143	55	2	81	212	52	194	2.86e-39	139
Msa0904990	AT5G65310.2	53.846	143	55	2	81	212	34	176	2.87e-39	139
Msa0904990	AT2G22430.1	64.078	103	37	0	90	192	55	157	1.55e-38	137
Msa0904990	AT4G40060.1	63.636	99	36	0	94	192	56	154	8.10e-38	135
Msa0904990	AT3G01470.1	62.000	100	38	0	93	192	64	163	2.76e-37	133
Msa0904990	AT2G46680.1	55.319	94	42	0	98	191	33	126	6.39e-29	111

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Find 74 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGATTGCTTTGAAAA+TGG	0.232266	6_2:-2756390	Msa0904990:CDS
AAACAACAAATTACATGCAG+AGG	0.604512	6_2:-2757876	Msa0904990:intron
AAAGTGTTGATGAGGTGGAA+AGG	0.650161	6_2:+2758622	None:intergenic
AAATGGGTGAAAAGAAGAAG+AGG	0.594234	6_2:-2758132	Msa0904990:CDS
AACCATATAGCTACTTGTCT+AGG	0.577432	6_2:+2758007	None:intergenic
AACCTAGACAAGTAGCTATA+TGG	0.403297	6_2:-2758009	Msa0904990:CDS
AAGATGAAAGTATGAGAAGG+TGG	0.578267	6_2:+2758716	None:intergenic
AAGTGTGATGAATTAGTGCA+TGG	0.667963	6_2:-2758193	Msa0904990:CDS
AATAAAATTCAGCATTTGTT+TGG	0.279943	6_2:-2755897	Msa0904990:three_prime_UTR
AATCTATTTGAGTCATGAAG+AGG	0.607100	6_2:-2755686	Msa0904990:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTATAGCTATAAAGCTATA+AGG	+	chr6_2:2755854-2755873	None:intergenic	30.0%
AAAAGTTTGCAACGTAACTT+CGG	+	chr6_2:2756125-2756144	None:intergenic	30.0%
GATCAATTATCAGATGAAGA+AGG	-	chr6_2:2756509-2756528	Msa0904990:intron	30.0%
GAAGCAATTTGATTCTCTTA+AGG	-	chr6_2:2756748-2756767	Msa0904990:intron	30.0%
AAACAACAAATTACATGCAG+AGG	-	chr6_2:2756796-2756815	Msa0904990:intron	30.0%
AATCAAAGTCTATATCAAGG+GGG	+	chr6_2:2757302-2757321	None:intergenic	30.0%
ATTTGATGTGTGTTTGTGAA+TGG	-	chr6_2:2757319-2757338	Msa0904990:intron	30.0%
AAAAGTCATAAAGACCATGT+GGG	+	chr6_2:2757624-2757643	None:intergenic	30.0%
AAAAAGTCATAAAGACCATG+TGG	+	chr6_2:2757625-2757644	None:intergenic	30.0%
GAATGATCAACTAACAATCA+AGG	+	chr6_2:2757681-2757700	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	2755609	2759085	2755609	ID=Msa0904990;Name=Msa0904990
chr6_2	mRNA	2755609	2759085	2755609	ID=Msa0904990-mRNA-1;Parent=Msa0904990;Name=Msa0904990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=338\|1\|1\|1\|1\|1\|3\|537\|278
chr6_2	exon	2755609	2756427	2755609	ID=Msa0904990-mRNA-1:exon:915;Parent=Msa0904990-mRNA-1
chr6_2	exon	2757877	2758301	2757877	ID=Msa0904990-mRNA-1:exon:914;Parent=Msa0904990-mRNA-1
chr6_2	exon	2758618	2759085	2758618	ID=Msa0904990-mRNA-1:exon:913;Parent=Msa0904990-mRNA-1
chr6_2	five_prime_UTR	2758748	2759085	2758748	ID=Msa0904990-mRNA-1:five_prime_utr;Parent=Msa0904990-mRNA-1
chr6_2	CDS	2758618	2758747	2758618	ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1
chr6_2	CDS	2757877	2758301	2757877	ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1
chr6_2	CDS	2756146	2756427	2756146	ID=Msa0904990-mRNA-1:cds;Parent=Msa0904990-mRNA-1
chr6_2	three_prime_UTR	2755609	2756145	2755609	ID=Msa0904990-mRNA-1:three_prime_utr;Parent=Msa0904990-mRNA-1

Gene Sequence

>Msa0904990

ATGGCTTTTCCACCTTCTCATACTTTCATCTTTCAAACTCATGATGATCATCATCATCATGAAAACATACTTTCATCTTCAACTTCTCTTAACTCCTATCCTTCCTTTCCACCTCATCAACACTTTCAAGGTAGTGGAAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAGCAATCATATAAACAACAATAAGTGTGATGAATTAGTGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGGTACTCACAAATGGGTGAAAAGAAGAAGAGGTTGAGTTTAGAACAAGTGAAAGCACTTGAGAAGAGTTTTGAGATTGGTAACAAGCTTGAACCTGAGAGAAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTCCAAAATAGAAGAGCAAGGTGGAAAACTAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGATTCTCTTAAGGCTGATAATGACACACTTAAGGCTCAAAACAACAAATTACATGCAGAGCTACAAACTCTAAAGAAAAGGGATTGCTTTGAAAATGGAACAATTAGCCTAAAAAAAGAAAATGAAGGTTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTAGACCTTTCTAGAACACCAAATTCACTTAAGCCTACAAGCATGACACAGCTCCTTCAATGCTCTTCAAGATCAGATCTTCAAGATGAAAGCTTTTGCAACATGTTTAACAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAACACCAATTCCGTTAA

Protein sequence

>Msa0904990

MAFPPSHTFIFQTHDDHHHHENILSSSTSLNSYPSFPPHQHFQGSGSNGGASFMMKRSMSFSGIESNHINNNKCDELVHGDEDQLSDEEGYSQMGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNDTLKAQNNKLHAELQTLKKRDCFENGTISLKKENEGSWSNGSDNSSDMNLDLSRTPNSLKPTSMTQLLQCSSRSDLQDESFCNMFNNIDEQQSLWPWTDHQQHQFR*