AlfalfaGEDB | Msa0905180

M. sativa cultivar zhongmu-4 / Msa0905180

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0905180	QDC33489.1	98.718	390	4	1	1	390	1	389	0.0	803

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0905180	sp\|Q9ZVH0\|FEZ_ARATH	58.088	272	104	6	1	265	1	269	6.41e-94	290

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0905180	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0905180	MtrunA17_Chr6g0453131	96.684	392	10	2	1	390	1	391	0.0	784
Msa0905180	MtrunA17_Chr8g0361731	50.495	404	177	11	1	390	1	395	8.44e-124	363
Msa0905180	MtrunA17_Chr5g0417001	48.000	425	152	20	1	390	1	391	5.27e-110	328
Msa0905180	MtrunA17_Chr2g0311651	56.842	190	70	5	1	179	3	191	1.57e-68	219
Msa0905180	MtrunA17_Chr2g0311661	44.718	284	113	10	1	270	3	256	4.20e-67	214
Msa0905180	MtrunA17_Chr5g0442771	56.983	179	65	3	7	174	1	178	6.27e-67	214
Msa0905180	MtrunA17_Chr4g0047841	52.910	189	67	6	15	185	15	199	8.70e-60	197
Msa0905180	MtrunA17_Chr2g0318101	53.293	167	74	4	14	177	14	179	2.59e-59	196
Msa0905180	MtrunA17_Chr7g0252971	54.706	170	63	5	14	175	7	170	7.08e-58	192
Msa0905180	MtrunA17_Chr4g0076731	53.374	163	64	3	13	175	52	202	1.87e-57	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0905180	AT1G26870.1	58.088	272	104	6	1	265	1	269	6.52e-95	290
Msa0905180	AT5G39820.1	64.706	204	56	6	1	190	5	206	1.24e-90	276
Msa0905180	AT2G43000.1	61.111	162	53	3	16	177	19	170	2.62e-70	222
Msa0905180	AT3G15510.1	49.246	199	91	6	19	210	21	216	8.53e-59	195
Msa0905180	AT3G12910.1	56.805	169	64	4	16	177	22	188	1.70e-58	192
Msa0905180	AT2G02450.2	53.750	160	62	3	15	174	51	198	8.97e-58	194
Msa0905180	AT2G02450.1	53.750	160	62	3	15	174	51	198	1.03e-57	193
Msa0905180	AT1G61110.1	53.614	166	73	3	15	177	16	180	1.71e-57	191
Msa0905180	AT3G04070.2	53.672	177	72	5	15	185	10	182	4.46e-57	190
Msa0905180	AT3G04070.1	48.705	193	73	5	15	185	10	198	1.75e-54	184

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Find 72 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATATAGTTAGTGT+TGG	0.509141	6_2:-3209523	None:intergenic
AAAATCTGAAGCTGAGAAGT+TGG	0.515670	6_2:-3209349	None:intergenic
AAACTTGGAGACAAATTGAA+TGG	0.481553	6_2:-3209675	None:intergenic
AACAGGAATTTGTGAGGATT+TGG	0.247261	6_2:-3209409	None:intergenic
AACCATGCTTCCTGGTAACT+GGG	0.505975	6_2:-3208663	None:intergenic
AACTGAGATGGATATTAACA+AGG	0.642088	6_2:+3206976	Msa0905180:CDS
AAGGTTGATGATTTGATGCC+TGG	0.470160	6_2:+3206995	Msa0905180:CDS
AAGTCACTTGTCTTCTATAA+GGG	0.469878	6_2:+3207935	Msa0905180:CDS
AATGGTATTTCTATTGTCCA+AGG	0.545816	6_2:+3207795	Msa0905180:CDS
AATTCATTAACCATGCTTCC+TGG	0.399214	6_2:-3208671	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGAGATGGATATTAACA+AGG	+	chr6_2:3206976-3206995	Msa0905180:CDS	30.0%
AAGTCACTTGTCTTCTATAA+GGG	+	chr6_2:3207935-3207954	Msa0905180:CDS	30.0%
AAAGGAAAAAATAGAGTGCA+TGG	-	chr6_2:3208336-3208355	None:intergenic	30.0%
AATGGACCCACATAAAATTA+TGG	+	chr6_2:3209124-3209143	Msa0905180:intron	30.0%
ATGGACCCACATAAAATTAT+GGG	+	chr6_2:3209125-3209144	Msa0905180:intron	30.0%
AGTGTTAGAGTTAGTATTGT+CGG	+	chr6_2:3209233-3209252	Msa0905180:intron	30.0%
CTTGTTGCTACAAAATTGAA+TGG	-	chr6_2:3209304-3209323	None:intergenic	30.0%
CTTTCCAACACTAACTATAT+TGG	+	chr6_2:3209519-3209538	Msa0905180:CDS	30.0%
ATCAAATGCAGCTTAATCAA+TGG	+	chr6_2:3209625-3209644	Msa0905180:CDS	30.0%
TCAAATGCAGCTTAATCAAT+GGG	+	chr6_2:3209626-3209645	Msa0905180:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	3206965	3209788	3206965	ID=Msa0905180;Name=Msa0905180
chr6_2	mRNA	3206965	3209788	3206965	ID=Msa0905180-mRNA-1;Parent=Msa0905180;Name=Msa0905180-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|4\|0\|390
chr6_2	exon	3206965	3207148	3206965	ID=Msa0905180-mRNA-1:exon:989;Parent=Msa0905180-mRNA-1
chr6_2	exon	3207768	3208072	3207768	ID=Msa0905180-mRNA-1:exon:990;Parent=Msa0905180-mRNA-1
chr6_2	exon	3208581	3208792	3208581	ID=Msa0905180-mRNA-1:exon:991;Parent=Msa0905180-mRNA-1
chr6_2	exon	3209317	3209788	3209317	ID=Msa0905180-mRNA-1:exon:992;Parent=Msa0905180-mRNA-1
chr6_2	CDS	3206965	3207148	3206965	ID=Msa0905180-mRNA-1:cds;Parent=Msa0905180-mRNA-1
chr6_2	CDS	3207768	3208072	3207768	ID=Msa0905180-mRNA-1:cds;Parent=Msa0905180-mRNA-1
chr6_2	CDS	3208581	3208792	3208581	ID=Msa0905180-mRNA-1:cds;Parent=Msa0905180-mRNA-1
chr6_2	CDS	3209317	3209788	3209317	ID=Msa0905180-mRNA-1:cds;Parent=Msa0905180-mRNA-1

Gene Sequence

>Msa0905180

ATGGAGGAAAGAACTGAGATGGATATTAACAAGGTTGATGATTTGATGCCTGGCTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTACCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAAGAGCTAGCAAGTAGTGGTGAAAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGACCTAATAGAGTTACAAGAGCTGGATTTTGGAAGGCAACTGGAACTGATAGGCCTATATATTCATCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAGGGTAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTACCTTGCATTTCAGATTCAAACACTCCTCCTAAAAAGTTTTCAGATAAAAGTTTCTCCCCAAATGATTCATGGGCAATCTGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCATTGTCTCACCCTTGGATCTCCCAGTTACCAGGAAGCATGGTTAATGAATTACTCACACAAACTACAAACATCAACCAACTCTGTTCAGAAAATAATATCTCATGCACAACAACAGAACATGGATCATCAGCAGGAACAAACTTACAAATCAACAAGCATGAGCTACAACAAGTCTCCAATACCAACTTCTCAGCTTCAGATTTTCCAAATTACAAACCTATCAACAACATCAACACAATTTCCAAATCCTCACAAATTCCTGTTCCTAATGGAGACATTATTGATAACCTAATGTTCTACACACTTGAAGCCAATGGTTCTACAAAGTGCACAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATGCAAATAATCAATATAATGGCTTCTCAATTAGTTTACCTCAAGATATGCAACCAAACATTGTGAATATTCAAGATCAAATGCAGCTTAATCAATGGGAAAATCTTGGAAGAACAATTGAATTTCCATTCAATTTGTCTCCAAGTTTTGATGCTTTGAGGACTAGTGTTACATGGGACTCACCACCTTGCACTAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG

Protein sequence

>Msa0905180

MEERTEMDINKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKELASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGMKTDWMMHEFRLPCISDSNTPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVNELLTQTTNINQLCSENNISCTTTEHGSSAGTNLQINKHELQQVSNTNFSASDFPNYKPINNINTISKSSQIPVPNGDIIDNLMFYTLEANGSTKCTIDDSSILSNTNYIGFEDANNQYNGFSISLPQDMQPNIVNIQDQMQLNQWENLGRTIEFPFNLSPSFDALRTSVTWDSPPCTSEMSTTYVTSKCYT*