Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909440 | XP_013470448.1 | 81.975 | 405 | 15 | 2 | 23 | 369 | 97 | 501 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909440 | sp|B6TGN4|MTEF4_MAIZE | 44.414 | 367 | 146 | 2 | 24 | 332 | 94 | 460 | 1.25e-106 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0909440 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909440 | MtrunA17_Chr1g0212691 | 81.975 | 405 | 15 | 2 | 23 | 369 | 97 | 501 | 0.0 | 615 |
| Msa0909440 | MtrunA17_Chr8g0391881 | 67.069 | 331 | 20 | 3 | 23 | 295 | 75 | 374 | 5.61e-138 | 397 |
| Msa0909440 | MtrunA17_Chr5g0428941 | 44.504 | 373 | 147 | 3 | 24 | 336 | 130 | 502 | 4.06e-100 | 306 |
| Msa0909440 | MtrunA17_Chr8g0391861 | 84.821 | 112 | 15 | 1 | 258 | 369 | 1 | 110 | 6.39e-53 | 172 |
| Msa0909440 | MtrunA17_Chr8g0391871 | 86.667 | 60 | 8 | 0 | 310 | 369 | 1 | 60 | 3.36e-29 | 107 |
| Msa0909440 | MtrunA17_Chr4g0034981 | 24.000 | 300 | 175 | 3 | 29 | 324 | 341 | 591 | 1.30e-25 | 108 |
| Msa0909440 | MtrunA17_Chr2g0294671 | 26.316 | 304 | 184 | 8 | 33 | 323 | 211 | 487 | 4.48e-24 | 103 |
| Msa0909440 | MtrunA17_Chr6g0448821 | 25.490 | 306 | 198 | 6 | 32 | 324 | 74 | 362 | 8.17e-24 | 101 |
| Msa0909440 | MtrunA17_Chr4g0043941 | 22.222 | 315 | 202 | 8 | 16 | 319 | 37 | 319 | 5.46e-20 | 89.7 |
| Msa0909440 | MtrunA17_Chr5g0417641 | 25.086 | 291 | 162 | 7 | 32 | 319 | 56 | 293 | 8.58e-18 | 83.2 |
| Msa0909440 | MtrunA17_Chr2g0304101 | 26.104 | 249 | 133 | 5 | 111 | 323 | 76 | 309 | 2.28e-15 | 76.3 |
| Msa0909440 | MtrunA17_Chr2g0311181 | 25.180 | 278 | 177 | 10 | 71 | 343 | 75 | 326 | 2.30e-15 | 76.3 |
| Msa0909440 | MtrunA17_Chr5g0445491 | 23.482 | 247 | 164 | 6 | 59 | 300 | 224 | 450 | 9.68e-15 | 75.5 |
| Msa0909440 | MtrunA17_Chr3g0127891 | 23.810 | 294 | 201 | 9 | 29 | 318 | 217 | 491 | 1.76e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0909440 | AT2G44020.1 | 66.010 | 406 | 79 | 3 | 23 | 369 | 102 | 507 | 0.0 | 517 |
| Msa0909440 | AT4G02990.2 | 45.232 | 367 | 143 | 2 | 24 | 332 | 138 | 504 | 1.19e-105 | 321 |
| Msa0909440 | AT4G02990.1 | 45.232 | 367 | 143 | 2 | 24 | 332 | 138 | 504 | 1.19e-105 | 321 |
| Msa0909440 | AT2G21710.1 | 23.235 | 340 | 228 | 6 | 26 | 354 | 309 | 626 | 1.53e-25 | 108 |
| Msa0909440 | AT1G78930.1 | 23.511 | 319 | 215 | 6 | 33 | 324 | 264 | 580 | 2.22e-24 | 105 |
| Msa0909440 | AT4G38160.4 | 23.022 | 278 | 193 | 4 | 50 | 322 | 63 | 324 | 3.39e-23 | 99.4 |
| Msa0909440 | AT4G38160.1 | 23.022 | 278 | 193 | 4 | 50 | 322 | 63 | 324 | 3.39e-23 | 99.4 |
| Msa0909440 | AT4G38160.2 | 23.022 | 278 | 193 | 4 | 50 | 322 | 63 | 324 | 4.79e-23 | 99.4 |
| Msa0909440 | AT4G38160.3 | 23.022 | 278 | 193 | 4 | 50 | 322 | 63 | 324 | 7.08e-23 | 99.0 |
| Msa0909440 | AT4G14605.2 | 27.869 | 244 | 146 | 6 | 100 | 319 | 231 | 468 | 4.15e-21 | 95.1 |
| Msa0909440 | AT4G14605.1 | 27.869 | 244 | 146 | 6 | 100 | 319 | 231 | 468 | 4.15e-21 | 95.1 |
| Msa0909440 | AT5G54180.1 | 25.092 | 271 | 152 | 6 | 86 | 320 | 235 | 490 | 1.05e-15 | 79.0 |
| Msa0909440 | AT5G55580.2 | 23.830 | 235 | 158 | 5 | 69 | 298 | 117 | 335 | 1.33e-14 | 75.1 |
| Msa0909440 | AT5G55580.1 | 23.830 | 235 | 158 | 5 | 69 | 298 | 223 | 441 | 4.02e-14 | 73.9 |
| Msa0909440 | AT2G21710.2 | 21.642 | 268 | 179 | 5 | 26 | 282 | 309 | 556 | 5.74e-14 | 73.6 |
| Msa0909440 | AT2G21710.3 | 21.429 | 266 | 178 | 5 | 26 | 280 | 309 | 554 | 4.09e-13 | 70.9 |
| Msa0909440 | AT2G34620.1 | 26.230 | 244 | 129 | 6 | 117 | 324 | 68 | 296 | 8.30e-13 | 68.9 |
| Msa0909440 | AT2G03050.1 | 38.182 | 110 | 66 | 2 | 215 | 322 | 163 | 272 | 8.59e-12 | 65.5 |
| Msa0909440 | AT2G03050.2 | 38.182 | 110 | 66 | 2 | 215 | 322 | 164 | 273 | 8.83e-12 | 65.5 |
| Msa0909440 | AT2G36000.2 | 20.667 | 300 | 175 | 8 | 33 | 326 | 73 | 315 | 4.12e-11 | 63.9 |
| Msa0909440 | AT2G36000.1 | 20.875 | 297 | 172 | 8 | 33 | 323 | 73 | 312 | 7.44e-11 | 63.2 |
Find 84 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | 6_2:+11186650 | Msa0909440:CDS |
| CTCCTGTTATTAAGTTTCTT+AGG | 0.190808 | 6_2:+11186805 | Msa0909440:CDS |
| GCTCAGTATCCACAGATTAT+TGG | 0.226147 | 6_2:+11187139 | Msa0909440:CDS |
| CTCAGTATCCACAGATTATT+GGG | 0.260746 | 6_2:+11187140 | Msa0909440:CDS |
| AGAATACTTCACCTATAGTT+TGG | 0.284806 | 6_2:+11187462 | Msa0909440:CDS |
| TACCGAAGTGCAACGGTTCC+AGG | 0.289835 | 6_2:-11186422 | None:intergenic |
| AAACTATAGGTGAAGTATTC+TGG | 0.305579 | 6_2:-11187460 | None:intergenic |
| CTCATGACTTCAACGGTTGC+AGG | 0.306808 | 6_2:-11186579 | None:intergenic |
| TCACCTATAGTTTGGAATCT+AGG | 0.308236 | 6_2:+11187470 | Msa0909440:CDS |
| CTCTTAAGCCTCTGGTATCT+AGG | 0.309752 | 6_2:-11187499 | None:intergenic |
| GGATAAAGTGTTCATTGAAT+TGG | 0.316271 | 6_2:+11187527 | Msa0909440:CDS |
| GATTATTGGGTTGCCTCTTA+AGG | 0.318484 | 6_2:+11187153 | Msa0909440:CDS |
| TCCTGTTATTAAGTTTCTTA+GGG | 0.320182 | 6_2:+11186806 | Msa0909440:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | 6_2:-11186876 | None:intergenic |
| CCCCTAAGAAACTTAATAAC+AGG | 0.351787 | 6_2:-11186807 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | 6_2:+11186835 | Msa0909440:CDS |
| GAAGACAATTTAGCCTTAAG+AGG | 0.360188 | 6_2:-11187166 | None:intergenic |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | 6_2:+11187279 | Msa0909440:CDS |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | 6_2:-11187656 | None:intergenic |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | 6_2:+11186934 | Msa0909440:CDS |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | 6_2:+11186834 | Msa0909440:CDS |
| TCCCCTTGCTCTTAAGCCTC+TGG | 0.375995 | 6_2:-11187507 | None:intergenic |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | 6_2:+11187570 | Msa0909440:CDS |
| ATGGCTTATCTTGTTAGTAT+TGG | 0.402535 | 6_2:+11186921 | Msa0909440:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | 6_2:+11186950 | Msa0909440:CDS |
| ATCGCATGATGTGGCTAGTA+TGG | 0.422295 | 6_2:+11187330 | Msa0909440:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | 6_2:-11187567 | None:intergenic |
| AATCCTAGATTCCAAACTAT+AGG | 0.441030 | 6_2:-11187473 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.441319 | 6_2:-11187608 | None:intergenic |
| ACCACCCTTGCAAACCCTTC+CGG | 0.446986 | 6_2:-11187226 | None:intergenic |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | 6_2:+11186942 | Msa0909440:CDS |
| ATAGGTCCTTCATTCTGTAT+TGG | 0.452739 | 6_2:+11187616 | Msa0909440:CDS |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.459036 | 6_2:+11187409 | Msa0909440:CDS |
| GAGGAAGGAATGTTTGCCTT+CGG | 0.461475 | 6_2:+11187111 | Msa0909440:CDS |
| AAACCTCACCGTTACCGTCC+TGG | 0.463835 | 6_2:+11186404 | Msa0909440:CDS |
| AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | 6_2:+11186371 | Msa0909440:CDS |
| TCCGGAAGGGTTTGCAAGGG+TGG | 0.482240 | 6_2:+11187225 | Msa0909440:CDS |
| ATACTGATTTATATCATCAA+TGG | 0.482461 | 6_2:-11186637 | None:intergenic |
| AGGATTTCTAGGTCTAAACT+TGG | 0.486283 | 6_2:+11186726 | Msa0909440:CDS |
| AGGTACTATGAGTACTTCAA+TGG | 0.487457 | 6_2:+11186902 | Msa0909440:CDS |
| GGTCCTTCATTCTGTATTGG+TGG | 0.495994 | 6_2:+11187619 | Msa0909440:CDS |
| GGAAGGGTTTGCAAGGGTGG+TGG | 0.497371 | 6_2:+11187228 | Msa0909440:CDS |
| TATAGTTTCAGATAAGGAAG+AGG | 0.499643 | 6_2:+11187666 | Msa0909440:CDS |
| TACCAGAGGCTTAAGAGCAA+GGG | 0.502139 | 6_2:+11187505 | Msa0909440:CDS |
| GGTGATCAAGTGTCCTCAAT+TGG | 0.503619 | 6_2:+11187351 | Msa0909440:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | 6_2:+11187207 | Msa0909440:CDS |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | 6_2:+11187408 | Msa0909440:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | 6_2:+11186935 | Msa0909440:CDS |
| ACTCGCAGCGCAACCAATTG+AGG | 0.528224 | 6_2:-11187364 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | 6_2:+11187598 | Msa0909440:CDS |
| GTCCTTCATTCTGTATTGGT+GGG | 0.540317 | 6_2:+11187620 | Msa0909440:CDS |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | 6_2:+11187212 | Msa0909440:CDS |
| TGATGAAGACTAACCACTTG+TGG | 0.559927 | 6_2:-11187259 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | 6_2:+11187571 | Msa0909440:CDS |
| ATACCAGAGGCTTAAGAGCA+AGG | 0.565715 | 6_2:+11187504 | Msa0909440:CDS |
| TTCCCACCAATACAGAATGA+AGG | 0.566084 | 6_2:-11187622 | None:intergenic |
| TTGATCCGGAAGGGTTTGCA+AGG | 0.567631 | 6_2:+11187221 | Msa0909440:CDS |
| GAATGATATAGTTTCAGATA+AGG | 0.572708 | 6_2:+11187660 | Msa0909440:CDS |
| CCTGTTATTAAGTTTCTTAG+GGG | 0.577517 | 6_2:+11186807 | Msa0909440:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | 6_2:-11186768 | None:intergenic |
| CTGCAACCGTTGAAGTCATG+AGG | 0.579492 | 6_2:+11186580 | Msa0909440:CDS |
| CAACGGTTCCAGGACGGTAA+CGG | 0.580492 | 6_2:-11186412 | None:intergenic |
| GAGACCTGTAAAAGAGCTTG+TGG | 0.581965 | 6_2:+11187432 | Msa0909440:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | 6_2:-11186586 | None:intergenic |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | 6_2:-11186966 | None:intergenic |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | 6_2:-11186660 | None:intergenic |
| GGCAATACCATCGCATGATG+TGG | 0.603609 | 6_2:+11187321 | Msa0909440:CDS |
| ACCAGAGGCTTAAGAGCAAG+GGG | 0.605082 | 6_2:+11187506 | Msa0909440:CDS |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | 6_2:-11187655 | None:intergenic |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | 6_2:+11187638 | Msa0909440:CDS |
| AAATCTGCTCCTACTACTGG+AGG | 0.621448 | 6_2:+11186374 | Msa0909440:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | 6_2:+11187211 | Msa0909440:CDS |
| GGTGGGAAATTAGAGCTACC+CGG | 0.623613 | 6_2:+11187637 | Msa0909440:CDS |
| AGAGGCAACCCAATAATCTG+TGG | 0.627647 | 6_2:-11187148 | None:intergenic |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | 6_2:-11186951 | None:intergenic |
| ACTTCTTCAAAAGTGAGATG+GGG | 0.645282 | 6_2:+11187410 | Msa0909440:CDS |
| TGCAACCGTTGAAGTCATGA+GGG | 0.653234 | 6_2:+11186581 | Msa0909440:CDS |
| TGATCCGGAAGGGTTTGCAA+GGG | 0.654444 | 6_2:+11187222 | Msa0909440:CDS |
| GGTGGAGAAGATGCCACAAG+TGG | 0.668174 | 6_2:+11187246 | Msa0909440:CDS |
| ATACTAGCCACATCATGCGA+TGG | 0.674562 | 6_2:-11187328 | None:intergenic |
| GGATACTGAGCAATAACCGA+AGG | 0.679020 | 6_2:-11187127 | None:intergenic |
| GTTCCAGGACGGTAACGGTG+AGG | 0.680687 | 6_2:-11186407 | None:intergenic |
| GGATTAAACCTAGATACCAG+AGG | 0.689589 | 6_2:+11187491 | Msa0909440:CDS |
| GAAGTGCAACGGTTCCAGGA+CGG | 0.701371 | 6_2:-11186418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr6_2:11186491-11186510 | Msa0909440:intron | 15.0% |
| !! | TAGGTTATTTAGAAAAAATT+AGG | + | chr6_2:11186706-11186725 | Msa0909440:CDS | 15.0% |
| !!! | AATTTTGGATTCATAATTTT+GGG | + | chr6_2:11186491-11186510 | Msa0909440:intron | 15.0% |
| !! | TAGGTTATTTAGAAAAAATT+AGG | + | chr6_2:11186706-11186725 | Msa0909440:CDS | 15.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr6_2:11186459-11186478 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr6_2:11186476-11186495 | Msa0909440:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr6_2:11186490-11186509 | Msa0909440:intron | 20.0% |
| !! | GTTGAGTTTATTCAAAAATT+AGG | + | chr6_2:11186609-11186628 | Msa0909440:CDS | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr6_2:11186640-11186659 | None:intergenic | 20.0% |
| !!! | TTTTCTAAATAACCTAAAAC+AGG | - | chr6_2:11186702-11186721 | None:intergenic | 20.0% |
| !! | TAGAAAAAATTAGGATTTCT+AGG | + | chr6_2:11186715-11186734 | Msa0909440:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr6_2:11186868-11186887 | Msa0909440:CDS | 20.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr6_2:11186459-11186478 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr6_2:11186476-11186495 | Msa0909440:intron | 20.0% |
| !!! | GAATTTTGGATTCATAATTT+TGG | + | chr6_2:11186490-11186509 | Msa0909440:intron | 20.0% |
| !! | GTTGAGTTTATTCAAAAATT+AGG | + | chr6_2:11186609-11186628 | Msa0909440:CDS | 20.0% |
| !!! | ATACTGATTTATATCATCAA+TGG | - | chr6_2:11186640-11186659 | None:intergenic | 20.0% |
| !!! | TTTTCTAAATAACCTAAAAC+AGG | - | chr6_2:11186702-11186721 | None:intergenic | 20.0% |
| !! | TAGAAAAAATTAGGATTTCT+AGG | + | chr6_2:11186715-11186734 | Msa0909440:CDS | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | + | chr6_2:11186868-11186887 | Msa0909440:CDS | 20.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr6_2:11186458-11186477 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr6_2:11186460-11186479 | None:intergenic | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr6_2:11186650-11186669 | Msa0909440:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr6_2:11186651-11186670 | Msa0909440:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr6_2:11186687-11186706 | Msa0909440:CDS | 25.0% |
| ! | TCCTGTTATTAAGTTTCTTA+GGG | + | chr6_2:11186806-11186825 | Msa0909440:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr6_2:11186835-11186854 | Msa0909440:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr6_2:11186867-11186886 | Msa0909440:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr6_2:11186975-11186994 | Msa0909440:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr6_2:11186976-11186995 | Msa0909440:intron | 25.0% |
| ! | TGATTACTTGGTTATTTACT+TGG | + | chr6_2:11187031-11187050 | Msa0909440:intron | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | chr6_2:11187082-11187101 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr6_2:11187085-11187104 | Msa0909440:intron | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr6_2:11187279-11187298 | Msa0909440:CDS | 25.0% |
| ! | GAATGATATAGTTTCAGATA+AGG | + | chr6_2:11187660-11187679 | Msa0909440:CDS | 25.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr6_2:11186458-11186477 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr6_2:11186460-11186479 | None:intergenic | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | + | chr6_2:11186650-11186669 | Msa0909440:CDS | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | + | chr6_2:11186651-11186670 | Msa0909440:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | + | chr6_2:11186687-11186706 | Msa0909440:CDS | 25.0% |
| ! | TCCTGTTATTAAGTTTCTTA+GGG | + | chr6_2:11186806-11186825 | Msa0909440:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | + | chr6_2:11186835-11186854 | Msa0909440:CDS | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | + | chr6_2:11186867-11186886 | Msa0909440:CDS | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | + | chr6_2:11186975-11186994 | Msa0909440:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | + | chr6_2:11186976-11186995 | Msa0909440:intron | 25.0% |
| ! | TGATTACTTGGTTATTTACT+TGG | + | chr6_2:11187031-11187050 | Msa0909440:intron | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | - | chr6_2:11187082-11187101 | None:intergenic | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | + | chr6_2:11187085-11187104 | Msa0909440:intron | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | + | chr6_2:11187279-11187298 | Msa0909440:CDS | 25.0% |
| ! | GAATGATATAGTTTCAGATA+AGG | + | chr6_2:11187660-11187679 | Msa0909440:CDS | 25.0% |
| CCTAAAAAATTAGGGGAAAA+CGG | - | chr6_2:11186451-11186470 | None:intergenic | 30.0% | |
| TATCATCTTCGATTATCTCA+AGG | + | chr6_2:11186515-11186534 | Msa0909440:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr6_2:11186516-11186535 | Msa0909440:intron | 30.0% | |
| CTCCTGTTATTAAGTTTCTT+AGG | + | chr6_2:11186805-11186824 | Msa0909440:CDS | 30.0% | |
| CCTGTTATTAAGTTTCTTAG+GGG | + | chr6_2:11186807-11186826 | Msa0909440:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr6_2:11186834-11186853 | Msa0909440:CDS | 30.0% | |
| ATGGCTTATCTTGTTAGTAT+TGG | + | chr6_2:11186921-11186940 | Msa0909440:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | chr6_2:11186934-11186953 | Msa0909440:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | chr6_2:11186935-11186954 | Msa0909440:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr6_2:11186987-11187006 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr6_2:11186987-11187006 | Msa0909440:intron | 30.0% |
| ATAACCAAGTAATCAACAAG+AGG | - | chr6_2:11187026-11187045 | None:intergenic | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr6_2:11187092-11187111 | Msa0909440:intron | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | chr6_2:11187207-11187226 | Msa0909440:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | + | chr6_2:11187408-11187427 | Msa0909440:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | chr6_2:11187409-11187428 | Msa0909440:CDS | 30.0% | |
| ! | AAACTATAGGTGAAGTATTC+TGG | - | chr6_2:11187463-11187482 | None:intergenic | 30.0% |
| AGAATACTTCACCTATAGTT+TGG | + | chr6_2:11187462-11187481 | Msa0909440:CDS | 30.0% | |
| AATCCTAGATTCCAAACTAT+AGG | - | chr6_2:11187476-11187495 | None:intergenic | 30.0% | |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr6_2:11187527-11187546 | Msa0909440:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | chr6_2:11187598-11187617 | Msa0909440:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr6_2:11187659-11187678 | None:intergenic | 30.0% |
| TATAGTTTCAGATAAGGAAG+AGG | + | chr6_2:11187666-11187685 | Msa0909440:CDS | 30.0% | |
| CCTAAAAAATTAGGGGAAAA+CGG | - | chr6_2:11186451-11186470 | None:intergenic | 30.0% | |
| TATCATCTTCGATTATCTCA+AGG | + | chr6_2:11186515-11186534 | Msa0909440:intron | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | + | chr6_2:11186516-11186535 | Msa0909440:intron | 30.0% | |
| CTCCTGTTATTAAGTTTCTT+AGG | + | chr6_2:11186805-11186824 | Msa0909440:CDS | 30.0% | |
| CCTGTTATTAAGTTTCTTAG+GGG | + | chr6_2:11186807-11186826 | Msa0909440:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | + | chr6_2:11186834-11186853 | Msa0909440:CDS | 30.0% | |
| ATGGCTTATCTTGTTAGTAT+TGG | + | chr6_2:11186921-11186940 | Msa0909440:CDS | 30.0% | |
| !! | TTAGTATTGGTGTTAATCCT+AGG | + | chr6_2:11186934-11186953 | Msa0909440:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | + | chr6_2:11186935-11186954 | Msa0909440:CDS | 30.0% |
| ACTCTCATCCCTAAAAAATA+AGG | - | chr6_2:11186987-11187006 | None:intergenic | 30.0% | |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | + | chr6_2:11186987-11187006 | Msa0909440:intron | 30.0% |
| ATAACCAAGTAATCAACAAG+AGG | - | chr6_2:11187026-11187045 | None:intergenic | 30.0% | |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | + | chr6_2:11187092-11187111 | Msa0909440:intron | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | + | chr6_2:11187207-11187226 | Msa0909440:CDS | 30.0% |
| TTACTTCTTCAAAAGTGAGA+TGG | + | chr6_2:11187408-11187427 | Msa0909440:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | + | chr6_2:11187409-11187428 | Msa0909440:CDS | 30.0% | |
| ! | AAACTATAGGTGAAGTATTC+TGG | - | chr6_2:11187463-11187482 | None:intergenic | 30.0% |
| AGAATACTTCACCTATAGTT+TGG | + | chr6_2:11187462-11187481 | Msa0909440:CDS | 30.0% | |
| AATCCTAGATTCCAAACTAT+AGG | - | chr6_2:11187476-11187495 | None:intergenic | 30.0% | |
| ! | GGATAAAGTGTTCATTGAAT+TGG | + | chr6_2:11187527-11187546 | Msa0909440:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | + | chr6_2:11187598-11187617 | Msa0909440:CDS | 30.0% |
| ! | ATCTGAAACTATATCATTCC+CGG | - | chr6_2:11187659-11187678 | None:intergenic | 30.0% |
| TATAGTTTCAGATAAGGAAG+AGG | + | chr6_2:11187666-11187685 | Msa0909440:CDS | 30.0% | |
| ! | CCGTTTTCCCCTAATTTTTT+AGG | + | chr6_2:11186448-11186467 | Msa0909440:intron | 35.0% |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr6_2:11186522-11186541 | Msa0909440:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr6_2:11186545-11186564 | Msa0909440:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr6_2:11186663-11186682 | None:intergenic | 35.0% | |
| ! | AGGATTTCTAGGTCTAAACT+TGG | + | chr6_2:11186726-11186745 | Msa0909440:CDS | 35.0% |
| CCCCTAAGAAACTTAATAAC+AGG | - | chr6_2:11186810-11186829 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr6_2:11186879-11186898 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr6_2:11186882-11186901 | Msa0909440:CDS | 35.0% |
| AGGTACTATGAGTACTTCAA+TGG | + | chr6_2:11186902-11186921 | Msa0909440:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr6_2:11186969-11186988 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr6_2:11187019-11187038 | Msa0909440:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr6_2:11187096-11187115 | Msa0909440:intron | 35.0% |
| CTCAGTATCCACAGATTATT+GGG | + | chr6_2:11187140-11187159 | Msa0909440:CDS | 35.0% | |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr6_2:11187169-11187188 | None:intergenic | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr6_2:11187295-11187314 | Msa0909440:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr6_2:11187301-11187320 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr6_2:11187300-11187319 | Msa0909440:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | + | chr6_2:11187410-11187429 | Msa0909440:CDS | 35.0% | |
| ! | TCACCTATAGTTTGGAATCT+AGG | + | chr6_2:11187470-11187489 | Msa0909440:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr6_2:11187571-11187590 | Msa0909440:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | chr6_2:11187611-11187630 | None:intergenic | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr6_2:11187616-11187635 | Msa0909440:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr6_2:11187658-11187677 | None:intergenic | 35.0% |
| ! | CAGAAGAACTGTTTCTCTTT+AGG | + | chr6_2:11187711-11187730 | Msa0909440:CDS | 35.0% |
| ! | CCGTTTTCCCCTAATTTTTT+AGG | + | chr6_2:11186448-11186467 | Msa0909440:intron | 35.0% |
| TTCGATTATCTCAAGGGTTT+GGG | + | chr6_2:11186522-11186541 | Msa0909440:intron | 35.0% | |
| AATTATCCCTGATGAATTGC+AGG | + | chr6_2:11186545-11186564 | Msa0909440:intron | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | - | chr6_2:11186663-11186682 | None:intergenic | 35.0% | |
| ! | AGGATTTCTAGGTCTAAACT+TGG | + | chr6_2:11186726-11186745 | Msa0909440:CDS | 35.0% |
| CCCCTAAGAAACTTAATAAC+AGG | - | chr6_2:11186810-11186829 | None:intergenic | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | - | chr6_2:11186879-11186898 | None:intergenic | 35.0% | |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | + | chr6_2:11186882-11186901 | Msa0909440:CDS | 35.0% |
| AGGTACTATGAGTACTTCAA+TGG | + | chr6_2:11186902-11186921 | Msa0909440:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | - | chr6_2:11186969-11186988 | None:intergenic | 35.0% | |
| ! | AAAGCCTCTTGTTGATTACT+TGG | + | chr6_2:11187019-11187038 | Msa0909440:intron | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | + | chr6_2:11187096-11187115 | Msa0909440:intron | 35.0% |
| CTCAGTATCCACAGATTATT+GGG | + | chr6_2:11187140-11187159 | Msa0909440:CDS | 35.0% | |
| !! | GAAGACAATTTAGCCTTAAG+AGG | - | chr6_2:11187169-11187188 | None:intergenic | 35.0% |
| ! | AAACCGGTTGAGTTTTTACT+TGG | + | chr6_2:11187295-11187314 | Msa0909440:CDS | 35.0% |
| CTACCAAGTAAAAACTCAAC+CGG | - | chr6_2:11187301-11187320 | None:intergenic | 35.0% | |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | + | chr6_2:11187300-11187319 | Msa0909440:CDS | 35.0% |
| ACTTCTTCAAAAGTGAGATG+GGG | + | chr6_2:11187410-11187429 | Msa0909440:CDS | 35.0% | |
| ! | TCACCTATAGTTTGGAATCT+AGG | + | chr6_2:11187470-11187489 | Msa0909440:CDS | 35.0% |
| AGATTTGAAGAGAGATTGCA+GGG | + | chr6_2:11187571-11187590 | Msa0909440:CDS | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | - | chr6_2:11187611-11187630 | None:intergenic | 35.0% | |
| ATAGGTCCTTCATTCTGTAT+TGG | + | chr6_2:11187616-11187635 | Msa0909440:CDS | 35.0% | |
| ! | TCTGAAACTATATCATTCCC+GGG | - | chr6_2:11187658-11187677 | None:intergenic | 35.0% |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr6_2:11186386-11186405 | None:intergenic | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr6_2:11186521-11186540 | Msa0909440:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr6_2:11186554-11186573 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr6_2:11186555-11186574 | None:intergenic | 40.0% | |
| ACACTAGCATGCAAAACTTG+TGG | - | chr6_2:11186771-11186790 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | chr6_2:11186942-11186961 | Msa0909440:CDS | 40.0% | |
| GCTCAGTATCCACAGATTAT+TGG | + | chr6_2:11187139-11187158 | Msa0909440:CDS | 40.0% | |
| ! | GATTATTGGGTTGCCTCTTA+AGG | + | chr6_2:11187153-11187172 | Msa0909440:CDS | 40.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | chr6_2:11187211-11187230 | Msa0909440:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | chr6_2:11187212-11187231 | Msa0909440:CDS | 40.0% | |
| TGATGAAGACTAACCACTTG+TGG | - | chr6_2:11187262-11187281 | None:intergenic | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr6_2:11187299-11187318 | Msa0909440:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr6_2:11187439-11187458 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | + | chr6_2:11187491-11187510 | Msa0909440:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr6_2:11187570-11187589 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr6_2:11187570-11187589 | Msa0909440:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr6_2:11187620-11187639 | Msa0909440:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr6_2:11187625-11187644 | None:intergenic | 40.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr6_2:11186386-11186405 | None:intergenic | 40.0% |
| CTTCGATTATCTCAAGGGTT+TGG | + | chr6_2:11186521-11186540 | Msa0909440:intron | 40.0% | |
| CCAAATCCTGCAATTCATCA+GGG | - | chr6_2:11186554-11186573 | None:intergenic | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | - | chr6_2:11186555-11186574 | None:intergenic | 40.0% | |
| ACACTAGCATGCAAAACTTG+TGG | - | chr6_2:11186771-11186790 | None:intergenic | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | + | chr6_2:11186942-11186961 | Msa0909440:CDS | 40.0% | |
| GCTCAGTATCCACAGATTAT+TGG | + | chr6_2:11187139-11187158 | Msa0909440:CDS | 40.0% | |
| ! | GATTATTGGGTTGCCTCTTA+AGG | + | chr6_2:11187153-11187172 | Msa0909440:CDS | 40.0% |
| AAGCTTAAGATTGATCCGGA+AGG | + | chr6_2:11187211-11187230 | Msa0909440:CDS | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | + | chr6_2:11187212-11187231 | Msa0909440:CDS | 40.0% | |
| TGATGAAGACTAACCACTTG+TGG | - | chr6_2:11187262-11187281 | None:intergenic | 40.0% | |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | + | chr6_2:11187299-11187318 | Msa0909440:CDS | 40.0% |
| ! | AACTCCACAAGCTCTTTTAC+AGG | - | chr6_2:11187439-11187458 | None:intergenic | 40.0% |
| GGATTAAACCTAGATACCAG+AGG | + | chr6_2:11187491-11187510 | Msa0909440:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | - | chr6_2:11187570-11187589 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | + | chr6_2:11187570-11187589 | Msa0909440:CDS | 40.0% | |
| ! | GTCCTTCATTCTGTATTGGT+GGG | + | chr6_2:11187620-11187639 | Msa0909440:CDS | 40.0% |
| TTCCCACCAATACAGAATGA+AGG | - | chr6_2:11187625-11187644 | None:intergenic | 40.0% | |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr6_2:11186371-11186390 | Msa0909440:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr6_2:11186374-11186393 | Msa0909440:CDS | 45.0% | |
| ACGGAATTACCGAAGTGCAA+CGG | - | chr6_2:11186432-11186451 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr6_2:11186551-11186570 | Msa0909440:intron | 45.0% | |
| TGCAACCGTTGAAGTCATGA+GGG | + | chr6_2:11186581-11186600 | Msa0909440:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | chr6_2:11186589-11186608 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | chr6_2:11186950-11186969 | Msa0909440:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | - | chr6_2:11186954-11186973 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCTT+CGG | + | chr6_2:11187111-11187130 | Msa0909440:CDS | 45.0% | |
| GGATACTGAGCAATAACCGA+AGG | - | chr6_2:11187130-11187149 | None:intergenic | 45.0% | |
| AGAGGCAACCCAATAATCTG+TGG | - | chr6_2:11187151-11187170 | None:intergenic | 45.0% | |
| ATACTAGCCACATCATGCGA+TGG | - | chr6_2:11187331-11187350 | None:intergenic | 45.0% | |
| ATCGCATGATGTGGCTAGTA+TGG | + | chr6_2:11187330-11187349 | Msa0909440:CDS | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr6_2:11187351-11187370 | Msa0909440:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr6_2:11187432-11187451 | Msa0909440:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | chr6_2:11187502-11187521 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr6_2:11187504-11187523 | Msa0909440:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr6_2:11187505-11187524 | Msa0909440:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr6_2:11187619-11187638 | Msa0909440:CDS | 45.0% | |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr6_2:11186371-11186390 | Msa0909440:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr6_2:11186374-11186393 | Msa0909440:CDS | 45.0% | |
| ACGGAATTACCGAAGTGCAA+CGG | - | chr6_2:11186432-11186451 | None:intergenic | 45.0% | |
| CCCTGATGAATTGCAGGATT+TGG | + | chr6_2:11186551-11186570 | Msa0909440:intron | 45.0% | |
| TGCAACCGTTGAAGTCATGA+GGG | + | chr6_2:11186581-11186600 | Msa0909440:CDS | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | - | chr6_2:11186589-11186608 | None:intergenic | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | + | chr6_2:11186950-11186969 | Msa0909440:CDS | 45.0% | |
| ACCATAGGACCAATATCCCT+AGG | - | chr6_2:11186954-11186973 | None:intergenic | 45.0% | |
| GAGGAAGGAATGTTTGCCTT+CGG | + | chr6_2:11187111-11187130 | Msa0909440:CDS | 45.0% | |
| GGATACTGAGCAATAACCGA+AGG | - | chr6_2:11187130-11187149 | None:intergenic | 45.0% | |
| AGAGGCAACCCAATAATCTG+TGG | - | chr6_2:11187151-11187170 | None:intergenic | 45.0% | |
| ATACTAGCCACATCATGCGA+TGG | - | chr6_2:11187331-11187350 | None:intergenic | 45.0% | |
| ATCGCATGATGTGGCTAGTA+TGG | + | chr6_2:11187330-11187349 | Msa0909440:CDS | 45.0% | |
| GGTGATCAAGTGTCCTCAAT+TGG | + | chr6_2:11187351-11187370 | Msa0909440:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | + | chr6_2:11187432-11187451 | Msa0909440:CDS | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | - | chr6_2:11187502-11187521 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | + | chr6_2:11187504-11187523 | Msa0909440:CDS | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | + | chr6_2:11187505-11187524 | Msa0909440:CDS | 45.0% | |
| GGTCCTTCATTCTGTATTGG+TGG | + | chr6_2:11187619-11187638 | Msa0909440:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGC+AGG | - | chr6_2:11186582-11186601 | None:intergenic | 50.0% | |
| CTGCAACCGTTGAAGTCATG+AGG | + | chr6_2:11186580-11186599 | Msa0909440:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr6_2:11187221-11187240 | Msa0909440:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr6_2:11187222-11187241 | Msa0909440:CDS | 50.0% | |
| GGCAATACCATCGCATGATG+TGG | + | chr6_2:11187321-11187340 | Msa0909440:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr6_2:11187506-11187525 | Msa0909440:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr6_2:11187637-11187656 | Msa0909440:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr6_2:11187638-11187657 | Msa0909440:CDS | 50.0% | |
| CTCATGACTTCAACGGTTGC+AGG | - | chr6_2:11186582-11186601 | None:intergenic | 50.0% | |
| CTGCAACCGTTGAAGTCATG+AGG | + | chr6_2:11186580-11186599 | Msa0909440:CDS | 50.0% | |
| TTGATCCGGAAGGGTTTGCA+AGG | + | chr6_2:11187221-11187240 | Msa0909440:CDS | 50.0% | |
| TGATCCGGAAGGGTTTGCAA+GGG | + | chr6_2:11187222-11187241 | Msa0909440:CDS | 50.0% | |
| GGCAATACCATCGCATGATG+TGG | + | chr6_2:11187321-11187340 | Msa0909440:CDS | 50.0% | |
| ACCAGAGGCTTAAGAGCAAG+GGG | + | chr6_2:11187506-11187525 | Msa0909440:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | + | chr6_2:11187637-11187656 | Msa0909440:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | + | chr6_2:11187638-11187657 | Msa0909440:CDS | 50.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr6_2:11186404-11186423 | Msa0909440:CDS | 55.0% | |
| CAACGGTTCCAGGACGGTAA+CGG | - | chr6_2:11186415-11186434 | None:intergenic | 55.0% | |
| GAAGTGCAACGGTTCCAGGA+CGG | - | chr6_2:11186421-11186440 | None:intergenic | 55.0% | |
| GTCCTGGAACCGTTGCACTT+CGG | + | chr6_2:11186420-11186439 | Msa0909440:intron | 55.0% | |
| TACCGAAGTGCAACGGTTCC+AGG | - | chr6_2:11186425-11186444 | None:intergenic | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr6_2:11187229-11187248 | None:intergenic | 55.0% | |
| GGTGGAGAAGATGCCACAAG+TGG | + | chr6_2:11187246-11187265 | Msa0909440:CDS | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr6_2:11187367-11187386 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr6_2:11187510-11187529 | None:intergenic | 55.0% | |
| AAACCTCACCGTTACCGTCC+TGG | + | chr6_2:11186404-11186423 | Msa0909440:CDS | 55.0% | |
| CAACGGTTCCAGGACGGTAA+CGG | - | chr6_2:11186415-11186434 | None:intergenic | 55.0% | |
| GAAGTGCAACGGTTCCAGGA+CGG | - | chr6_2:11186421-11186440 | None:intergenic | 55.0% | |
| GTCCTGGAACCGTTGCACTT+CGG | + | chr6_2:11186420-11186439 | Msa0909440:intron | 55.0% | |
| TACCGAAGTGCAACGGTTCC+AGG | - | chr6_2:11186425-11186444 | None:intergenic | 55.0% | |
| ACCACCCTTGCAAACCCTTC+CGG | - | chr6_2:11187229-11187248 | None:intergenic | 55.0% | |
| GGTGGAGAAGATGCCACAAG+TGG | + | chr6_2:11187246-11187265 | Msa0909440:CDS | 55.0% | |
| ACTCGCAGCGCAACCAATTG+AGG | - | chr6_2:11187367-11187386 | None:intergenic | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | - | chr6_2:11187510-11187529 | None:intergenic | 55.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr6_2:11186410-11186429 | None:intergenic | 60.0% |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr6_2:11187225-11187244 | Msa0909440:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr6_2:11187228-11187247 | Msa0909440:CDS | 60.0% | |
| ! | GTTCCAGGACGGTAACGGTG+AGG | - | chr6_2:11186410-11186429 | None:intergenic | 60.0% |
| TCCGGAAGGGTTTGCAAGGG+TGG | + | chr6_2:11187225-11187244 | Msa0909440:CDS | 60.0% | |
| GGAAGGGTTTGCAAGGGTGG+TGG | + | chr6_2:11187228-11187247 | Msa0909440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 11186365 | 11187732 | 11186365 | ID=Msa0909440;Name=Msa0909440 |
| chr6_2 | mRNA | 11186365 | 11187732 | 11186365 | ID=Msa0909440-mRNA-1;Parent=Msa0909440;Name=Msa0909440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.66|1|0.66|3|0|369 |
| chr6_2 | exon | 11186365 | 11186430 | 11186365 | ID=Msa0909440-mRNA-1:exon:2779;Parent=Msa0909440-mRNA-1 |
| chr6_2 | exon | 11186567 | 11186979 | 11186567 | ID=Msa0909440-mRNA-1:exon:2780;Parent=Msa0909440-mRNA-1 |
| chr6_2 | exon | 11187102 | 11187732 | 11187102 | ID=Msa0909440-mRNA-1:exon:2781;Parent=Msa0909440-mRNA-1 |
| chr6_2 | CDS | 11186365 | 11186430 | 11186365 | ID=Msa0909440-mRNA-1:cds;Parent=Msa0909440-mRNA-1 |
| chr6_2 | CDS | 11186567 | 11186979 | 11186567 | ID=Msa0909440-mRNA-1:cds;Parent=Msa0909440-mRNA-1 |
| chr6_2 | CDS | 11187102 | 11187732 | 11187102 | ID=Msa0909440-mRNA-1:cds;Parent=Msa0909440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
