Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910240 | XP_039685680.1 | 83.092 | 414 | 54 | 1 | 1 | 398 | 1 | 414 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910240 | sp|Q9SZL8|FRS5_ARATH | 30.645 | 372 | 236 | 6 | 32 | 398 | 70 | 424 | 2.21e-49 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0910240 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910240 | MtrunA17_Chr2g0324011 | 35.054 | 368 | 212 | 6 | 36 | 397 | 8 | 354 | 8.47e-70 | 230 |
| Msa0910240 | MtrunA17_Chr3g0082121 | 34.421 | 337 | 194 | 6 | 41 | 377 | 49 | 358 | 7.70e-62 | 211 |
| Msa0910240 | MtrunA17_Chr1g0164591 | 38.057 | 247 | 144 | 2 | 131 | 377 | 1 | 238 | 3.98e-58 | 192 |
| Msa0910240 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 5.94e-57 | 189 |
| Msa0910240 | MtrunA17_Chr1g0172971 | 80.342 | 117 | 22 | 1 | 1 | 116 | 1 | 117 | 3.11e-56 | 193 |
| Msa0910240 | MtrunA17_Chr1g0202341 | 33.432 | 338 | 205 | 5 | 34 | 371 | 50 | 367 | 5.84e-56 | 195 |
| Msa0910240 | MtrunA17_Chr8g0363841 | 31.445 | 353 | 217 | 7 | 40 | 389 | 22 | 352 | 3.02e-49 | 176 |
| Msa0910240 | MtrunA17_Chr5g0448761 | 30.499 | 341 | 218 | 4 | 32 | 369 | 57 | 381 | 2.26e-47 | 172 |
| Msa0910240 | MtrunA17_Chr1g0203721 | 30.000 | 350 | 206 | 7 | 40 | 378 | 68 | 389 | 2.05e-46 | 170 |
| Msa0910240 | MtrunA17_Chr2g0296781 | 31.105 | 344 | 213 | 7 | 39 | 382 | 1 | 320 | 6.12e-46 | 168 |
| Msa0910240 | MtrunA17_Chr6g0458391 | 29.086 | 361 | 215 | 6 | 41 | 398 | 231 | 553 | 6.47e-44 | 162 |
| Msa0910240 | MtrunA17_Chr2g0287651 | 28.863 | 343 | 219 | 6 | 39 | 377 | 79 | 400 | 9.83e-44 | 162 |
| Msa0910240 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.81e-42 | 143 |
| Msa0910240 | MtrunA17_Chr6g0477261 | 36.453 | 203 | 129 | 0 | 180 | 382 | 7 | 209 | 7.31e-41 | 153 |
| Msa0910240 | MtrunA17_Chr5g0441581 | 29.619 | 341 | 206 | 8 | 32 | 369 | 26 | 335 | 3.24e-39 | 149 |
| Msa0910240 | MtrunA17_Chr5g0431001 | 28.402 | 338 | 217 | 8 | 40 | 369 | 66 | 386 | 4.95e-36 | 137 |
| Msa0910240 | MtrunA17_Chr1g0203051 | 26.061 | 330 | 221 | 4 | 50 | 377 | 94 | 402 | 1.00e-35 | 138 |
| Msa0910240 | MtrunA17_Chr2g0329031 | 27.978 | 361 | 219 | 8 | 23 | 377 | 2 | 327 | 1.11e-35 | 139 |
| Msa0910240 | MtrunA17_Chr1g0198761 | 28.249 | 354 | 225 | 8 | 26 | 369 | 38 | 372 | 1.79e-35 | 138 |
| Msa0910240 | MtrunA17_Chr1g0196541 | 27.697 | 343 | 218 | 8 | 39 | 378 | 1 | 316 | 1.16e-34 | 135 |
| Msa0910240 | MtrunA17_Chr2g0291591 | 28.065 | 367 | 205 | 11 | 16 | 364 | 44 | 369 | 3.28e-34 | 133 |
| Msa0910240 | MtrunA17_Chr1g0207551 | 27.874 | 348 | 227 | 6 | 31 | 377 | 30 | 354 | 1.36e-32 | 130 |
| Msa0910240 | MtrunA17_Chr5g0440451 | 25.065 | 383 | 236 | 8 | 34 | 397 | 42 | 392 | 3.40e-32 | 129 |
| Msa0910240 | MtrunA17_Chr2g0287061 | 27.035 | 344 | 192 | 8 | 41 | 382 | 189 | 475 | 1.85e-31 | 126 |
| Msa0910240 | MtrunA17_Chr2g0276841 | 26.852 | 324 | 213 | 7 | 49 | 367 | 84 | 388 | 1.67e-30 | 123 |
| Msa0910240 | MtrunA17_Chr2g0290391 | 27.168 | 346 | 216 | 8 | 39 | 369 | 55 | 379 | 1.92e-30 | 123 |
| Msa0910240 | MtrunA17_Chr3g0118611 | 35.519 | 183 | 113 | 2 | 221 | 398 | 111 | 293 | 6.32e-30 | 122 |
| Msa0910240 | MtrunA17_Chr2g0294841 | 27.941 | 340 | 212 | 10 | 41 | 369 | 51 | 368 | 6.42e-29 | 119 |
| Msa0910240 | MtrunA17_Chr3g0080351 | 26.377 | 345 | 224 | 5 | 34 | 378 | 75 | 389 | 8.07e-29 | 119 |
| Msa0910240 | MtrunA17_Chr5g0448511 | 33.333 | 180 | 117 | 2 | 216 | 393 | 1 | 179 | 2.89e-28 | 116 |
| Msa0910240 | MtrunA17_Chr2g0291581 | 26.074 | 326 | 205 | 5 | 38 | 362 | 74 | 364 | 3.82e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0910240 | AT4G38180.1 | 30.645 | 372 | 236 | 6 | 32 | 398 | 70 | 424 | 2.24e-50 | 181 |
| Msa0910240 | AT3G06250.2 | 28.409 | 352 | 188 | 7 | 34 | 382 | 189 | 479 | 4.89e-38 | 146 |
| Msa0910240 | AT3G06250.1 | 28.409 | 352 | 188 | 7 | 34 | 382 | 189 | 479 | 4.89e-38 | 146 |
| Msa0910240 | AT3G06250.3 | 28.409 | 352 | 188 | 7 | 34 | 382 | 189 | 479 | 4.89e-38 | 146 |
| Msa0910240 | AT5G18960.2 | 26.741 | 359 | 198 | 9 | 24 | 377 | 200 | 498 | 2.30e-33 | 132 |
| Msa0910240 | AT5G18960.1 | 26.741 | 359 | 198 | 9 | 24 | 377 | 200 | 498 | 2.30e-33 | 132 |
| Msa0910240 | AT5G28530.3 | 27.221 | 349 | 215 | 8 | 40 | 367 | 60 | 390 | 4.05e-31 | 125 |
| Msa0910240 | AT5G28530.2 | 27.221 | 349 | 215 | 8 | 40 | 367 | 60 | 390 | 4.05e-31 | 125 |
| Msa0910240 | AT5G28530.1 | 27.221 | 349 | 215 | 8 | 40 | 367 | 60 | 390 | 4.09e-31 | 125 |
| Msa0910240 | AT2G27110.2 | 26.316 | 399 | 235 | 10 | 4 | 397 | 23 | 367 | 4.13e-31 | 126 |
| Msa0910240 | AT2G27110.1 | 26.316 | 399 | 235 | 10 | 4 | 397 | 23 | 367 | 4.13e-31 | 126 |
| Msa0910240 | AT4G15090.1 | 28.395 | 324 | 209 | 7 | 50 | 371 | 66 | 368 | 4.97e-31 | 125 |
| Msa0910240 | AT4G15090.5 | 28.395 | 324 | 209 | 7 | 50 | 371 | 66 | 368 | 4.97e-31 | 125 |
| Msa0910240 | AT4G15090.3 | 28.395 | 324 | 209 | 7 | 50 | 371 | 66 | 368 | 4.97e-31 | 125 |
| Msa0910240 | AT4G15090.2 | 28.395 | 324 | 209 | 7 | 50 | 371 | 66 | 368 | 4.97e-31 | 125 |
| Msa0910240 | AT4G15090.4 | 28.395 | 324 | 209 | 7 | 50 | 371 | 66 | 368 | 4.97e-31 | 125 |
| Msa0910240 | AT2G27110.3 | 34.225 | 187 | 121 | 1 | 213 | 397 | 36 | 222 | 8.88e-31 | 124 |
| Msa0910240 | AT1G76320.3 | 27.108 | 332 | 206 | 8 | 50 | 377 | 12 | 311 | 1.15e-29 | 121 |
| Msa0910240 | AT1G76320.2 | 27.108 | 332 | 206 | 8 | 50 | 377 | 12 | 311 | 1.71e-29 | 121 |
| Msa0910240 | AT1G76320.1 | 27.108 | 332 | 206 | 8 | 50 | 377 | 12 | 311 | 1.77e-29 | 121 |
| Msa0910240 | AT1G76320.4 | 27.108 | 332 | 206 | 8 | 50 | 377 | 12 | 311 | 1.77e-29 | 121 |
| Msa0910240 | AT1G10240.2 | 25.926 | 324 | 216 | 7 | 49 | 367 | 62 | 366 | 2.75e-29 | 120 |
| Msa0910240 | AT1G10240.1 | 25.926 | 324 | 216 | 7 | 49 | 367 | 62 | 366 | 2.75e-29 | 120 |
| Msa0910240 | AT1G80010.1 | 27.049 | 366 | 224 | 11 | 41 | 393 | 101 | 436 | 1.14e-28 | 118 |
| Msa0910240 | AT2G32250.2 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.69e-28 | 118 |
| Msa0910240 | AT2G32250.4 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.69e-28 | 118 |
| Msa0910240 | AT2G32250.6 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.77e-28 | 118 |
| Msa0910240 | AT2G32250.1 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.77e-28 | 118 |
| Msa0910240 | AT2G32250.3 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.77e-28 | 118 |
| Msa0910240 | AT2G32250.5 | 27.100 | 369 | 199 | 10 | 1 | 367 | 8 | 308 | 1.85e-28 | 118 |
| Msa0910240 | AT2G32250.8 | 28.125 | 320 | 164 | 8 | 50 | 367 | 12 | 267 | 4.89e-28 | 117 |
| Msa0910240 | AT2G32250.7 | 28.125 | 320 | 164 | 8 | 50 | 367 | 12 | 267 | 5.08e-28 | 116 |
| Msa0910240 | AT3G22170.2 | 24.355 | 349 | 227 | 7 | 34 | 378 | 69 | 384 | 5.12e-26 | 110 |
| Msa0910240 | AT3G22170.1 | 24.355 | 349 | 227 | 7 | 34 | 378 | 69 | 384 | 5.12e-26 | 110 |
| Msa0910240 | AT4G38170.1 | 33.735 | 166 | 103 | 3 | 235 | 397 | 24 | 185 | 2.16e-24 | 105 |
| Msa0910240 | AT1G52520.1 | 25.073 | 343 | 223 | 8 | 41 | 382 | 91 | 400 | 9.79e-21 | 94.7 |
| Msa0910240 | AT4G19990.1 | 29.775 | 178 | 122 | 2 | 219 | 393 | 106 | 283 | 4.03e-18 | 87.0 |
| Msa0910240 | AT4G19990.3 | 29.775 | 178 | 122 | 2 | 219 | 393 | 163 | 340 | 4.19e-18 | 87.0 |
| Msa0910240 | AT4G19990.4 | 29.775 | 178 | 122 | 2 | 219 | 393 | 163 | 340 | 4.19e-18 | 87.0 |
| Msa0910240 | AT4G19990.5 | 29.775 | 178 | 122 | 2 | 219 | 393 | 163 | 340 | 4.54e-18 | 86.7 |
| Msa0910240 | AT4G19990.7 | 29.775 | 178 | 122 | 2 | 219 | 393 | 177 | 354 | 4.55e-18 | 86.7 |
| Msa0910240 | AT4G19990.6 | 29.775 | 178 | 122 | 2 | 219 | 393 | 163 | 340 | 5.39e-18 | 86.7 |
| Msa0910240 | AT4G19990.2 | 29.775 | 178 | 122 | 2 | 219 | 393 | 163 | 340 | 5.39e-18 | 86.7 |
Find 121 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6_2:+14044187 | Msa0910240:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 6_2:-14045322 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6_2:+14044454 | Msa0910240:three_prime_UTR |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 6_2:+14043906 | Msa0910240:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6_2:+14043394 | Msa0910240:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6_2:+14043939 | Msa0910240:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6_2:-14044033 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 6_2:-14045316 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.317950 | 6_2:+14044228 | Msa0910240:exon |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 6_2:+14045168 | Msa0910240:three_prime_UTR |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6_2:-14044051 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 6_2:+14045565 | Msa0910240:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 6_2:-14045384 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 6_2:+14044487 | Msa0910240:three_prime_UTR |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 6_2:-14045044 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6_2:+14044328 | Msa0910240:three_prime_UTR |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 6_2:+14045546 | Msa0910240:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 6_2:+14045160 | Msa0910240:three_prime_UTR |
| GGGTTGTCACAGTTGACATT+AGG | 0.388482 | 6_2:+14044834 | Msa0910240:three_prime_UTR |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6_2:+14043451 | Msa0910240:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 6_2:+14044496 | Msa0910240:three_prime_UTR |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 6_2:+14042531 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6_2:+14044327 | Msa0910240:three_prime_UTR |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6_2:-14042914 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 6_2:+14045308 | Msa0910240:three_prime_UTR |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6_2:-14045298 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 6_2:+14045193 | Msa0910240:three_prime_UTR |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 6_2:-14042675 | None:intergenic |
| GGACCGCATAAGCTGACTAT+TGG | 0.410008 | 6_2:-14044549 | None:intergenic |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 6_2:+14044876 | Msa0910240:three_prime_UTR |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6_2:-14044799 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.414157 | 6_2:+14044628 | Msa0910240:three_prime_UTR |
| ATCGAACAAACAATAAATAT+CGG | 0.414315 | 6_2:+14043443 | Msa0910240:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 6_2:+14042756 | Msa0910240:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6_2:-14044800 | None:intergenic |
| AGCTGGAATATATTTAAAGT+TGG | 0.426315 | 6_2:+14042973 | Msa0910240:CDS |
| GACCTACTTCAGACTTTAAG+TGG | 0.427687 | 6_2:+14044282 | Msa0910240:three_prime_UTR |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6_2:+14043091 | Msa0910240:CDS |
| GACCGCATAAGCTGACTATT+GGG | 0.435741 | 6_2:-14044548 | None:intergenic |
| CGCAAACACGTGTAGAAAGC+TGG | 0.439904 | 6_2:-14045111 | None:intergenic |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6_2:-14044044 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6_2:+14042956 | Msa0910240:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6_2:-14044977 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 6_2:+14042839 | Msa0910240:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6_2:+14043121 | Msa0910240:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 6_2:+14042610 | Msa0910240:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 6_2:+14044118 | Msa0910240:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 6_2:+14044877 | Msa0910240:three_prime_UTR |
| ATCAGATTTCGACTACAATT+GGG | 0.464503 | 6_2:+14044229 | Msa0910240:exon |
| CTCAAGTAACGCAAATGCTC+TGG | 0.465560 | 6_2:-14043061 | None:intergenic |
| TGAATGTCTATAAGATATAT+AGG | 0.472794 | 6_2:+14043005 | Msa0910240:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 6_2:+14043166 | Msa0910240:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 6_2:-14044630 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 6_2:+14042743 | Msa0910240:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 6_2:+14045269 | Msa0910240:three_prime_UTR |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 6_2:+14043234 | Msa0910240:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 6_2:+14044644 | Msa0910240:three_prime_UTR |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6_2:-14043919 | None:intergenic |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6_2:+14043247 | Msa0910240:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6_2:+14044468 | Msa0910240:three_prime_UTR |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 6_2:+14043153 | Msa0910240:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6_2:-14043339 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 6_2:+14045268 | Msa0910240:three_prime_UTR |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6_2:+14044315 | Msa0910240:three_prime_UTR |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6_2:+14044813 | Msa0910240:three_prime_UTR |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6_2:-14043205 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6_2:+14044333 | Msa0910240:three_prime_UTR |
| TAAAGAATCATGGAAGTCAT+TGG | 0.509974 | 6_2:+14042685 | Msa0910240:CDS |
| AATCAAACAAGTGAATGGTC+TGG | 0.518433 | 6_2:-14044431 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6_2:-14044793 | None:intergenic |
| TAAAGAATCAAACAAGTGAA+TGG | 0.521506 | 6_2:-14044436 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 6_2:+14043009 | Msa0910240:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6_2:+14044814 | Msa0910240:three_prime_UTR |
| ACAAAATAAGAAATCAGATA+AGG | 0.530342 | 6_2:+14042805 | Msa0910240:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 6_2:+14045374 | Msa0910240:three_prime_UTR |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 6_2:+14045034 | Msa0910240:three_prime_UTR |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 6_2:+14042850 | Msa0910240:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 6_2:+14044645 | Msa0910240:three_prime_UTR |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 6_2:+14042675 | Msa0910240:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6_2:+14042851 | Msa0910240:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.557138 | 6_2:-14043049 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6_2:-14044064 | None:intergenic |
| GAGGCTTTAATAATTTAAGC+GGG | 0.565110 | 6_2:+14045418 | Msa0910240:three_prime_UTR |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6_2:+14043301 | Msa0910240:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 6_2:+14042634 | Msa0910240:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 6_2:+14043169 | Msa0910240:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 6_2:+14045120 | Msa0910240:three_prime_UTR |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 6_2:-14045280 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 6_2:+14045399 | Msa0910240:three_prime_UTR |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 6_2:-14044570 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 6_2:+14043160 | Msa0910240:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 6_2:+14045161 | Msa0910240:three_prime_UTR |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 6_2:+14044050 | Msa0910240:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 6_2:+14045156 | Msa0910240:three_prime_UTR |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 6_2:+14045461 | Msa0910240:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 6_2:-14045236 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 6_2:+14044783 | Msa0910240:three_prime_UTR |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 6_2:-14045068 | None:intergenic |
| TGAGGCTTTAATAATTTAAG+CGG | 0.601818 | 6_2:+14045417 | Msa0910240:three_prime_UTR |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 6_2:+14043154 | Msa0910240:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 6_2:+14043240 | Msa0910240:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 6_2:+14045123 | Msa0910240:three_prime_UTR |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 6_2:+14044631 | Msa0910240:three_prime_UTR |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 6_2:+14044729 | Msa0910240:three_prime_UTR |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 6_2:+14043243 | Msa0910240:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.614939 | 6_2:-14044284 | None:intergenic |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 6_2:+14042599 | Msa0910240:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 6_2:+14044730 | Msa0910240:three_prime_UTR |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6_2:-14042899 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 6_2:+14043174 | Msa0910240:CDS |
| ATCCCAATAGTCAGCTTATG+CGG | 0.628481 | 6_2:+14044546 | Msa0910240:three_prime_UTR |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6_2:-14044798 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6_2:+14044119 | Msa0910240:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6_2:+14044469 | Msa0910240:three_prime_UTR |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 6_2:+14043008 | Msa0910240:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6_2:-14045019 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 6_2:-14044590 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 6_2:+14045145 | Msa0910240:three_prime_UTR |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 6_2:-14044895 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 6_2:+14044046 | Msa0910240:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 6_2:+14044878 | Msa0910240:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr6_2:14045448-14045467 | Msa0910240:three_prime_UTR | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr6_2:14042743-14042762 | Msa0910240:CDS | 20.0% |
| !! | ACAAAATAAGAAATCAGATA+AGG | + | chr6_2:14042805-14042824 | Msa0910240:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr6_2:14043005-14043024 | Msa0910240:CDS | 20.0% |
| !! | ATCGAACAAACAATAAATAT+CGG | + | chr6_2:14043443-14043462 | Msa0910240:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr6_2:14043597-14043616 | Msa0910240:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | + | chr6_2:14043625-14043644 | Msa0910240:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr6_2:14044257-14044276 | Msa0910240:three_prime_UTR | 20.0% |
| !! | AAAGTGATTATGAAAAAGTT+AGG | + | chr6_2:14045347-14045366 | Msa0910240:three_prime_UTR | 20.0% |
| !! | AAGTGATTATGAAAAAGTTA+GGG | + | chr6_2:14045348-14045367 | Msa0910240:three_prime_UTR | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr6_2:14045546-14045565 | Msa0910240:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr6_2:14042634-14042653 | Msa0910240:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCA+TGG | - | chr6_2:14042795-14042814 | None:intergenic | 25.0% |
| ! | TAAAGAAAAACTAGAGGAAA+GGG | + | chr6_2:14042940-14042959 | Msa0910240:CDS | 25.0% |
| !! | AGCTGGAATATATTTAAAGT+TGG | + | chr6_2:14042973-14042992 | Msa0910240:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr6_2:14043008-14043027 | Msa0910240:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr6_2:14043009-14043028 | Msa0910240:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr6_2:14043121-14043140 | Msa0910240:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr6_2:14043356-14043375 | Msa0910240:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | chr6_2:14043357-14043376 | Msa0910240:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr6_2:14043469-14043488 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr6_2:14043515-14043534 | Msa0910240:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr6_2:14043617-14043636 | Msa0910240:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr6_2:14043877-14043896 | Msa0910240:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr6_2:14044095-14044114 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAGAAAAATCT+CGG | + | chr6_2:14044143-14044162 | Msa0910240:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr6_2:14044187-14044206 | Msa0910240:CDS | 25.0% |
| ! | TAAAGAATCAAACAAGTGAA+TGG | - | chr6_2:14044439-14044458 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr6_2:14044454-14044473 | Msa0910240:three_prime_UTR | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr6_2:14044593-14044612 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr6_2:14044628-14044647 | Msa0910240:three_prime_UTR | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | + | chr6_2:14044688-14044707 | Msa0910240:three_prime_UTR | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr6_2:14044729-14044748 | Msa0910240:three_prime_UTR | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr6_2:14044730-14044749 | Msa0910240:three_prime_UTR | 25.0% |
| !! | TGAGGCTTTAATAATTTAAG+CGG | + | chr6_2:14045417-14045436 | Msa0910240:three_prime_UTR | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | - | chr6_2:14042678-14042697 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr6_2:14042675-14042694 | Msa0910240:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCAT+TGG | + | chr6_2:14042685-14042704 | Msa0910240:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr6_2:14042850-14042869 | Msa0910240:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr6_2:14042851-14042870 | Msa0910240:CDS | 30.0% | |
| GAAAGCTAAAGAAAAACTAG+AGG | + | chr6_2:14042934-14042953 | Msa0910240:CDS | 30.0% | |
| CTAAAGAAAAACTAGAGGAA+AGG | + | chr6_2:14042939-14042958 | Msa0910240:CDS | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr6_2:14043052-14043071 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | + | chr6_2:14043154-14043173 | Msa0910240:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr6_2:14043198-14043217 | Msa0910240:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr6_2:14043208-14043227 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr6_2:14043322-14043341 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr6_2:14043394-14043413 | Msa0910240:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr6_2:14043451-14043470 | Msa0910240:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr6_2:14043529-14043548 | Msa0910240:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr6_2:14043554-14043573 | Msa0910240:intron | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr6_2:14043688-14043707 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr6_2:14043836-14043855 | Msa0910240:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr6_2:14043922-14043941 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr6_2:14044036-14044055 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr6_2:14044086-14044105 | Msa0910240:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr6_2:14044098-14044117 | Msa0910240:CDS | 30.0% |
| AATCAGATTTCGACTACAAT+TGG | + | chr6_2:14044228-14044247 | Msa0910240:exon | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr6_2:14044229-14044248 | Msa0910240:exon | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr6_2:14044573-14044592 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr6_2:14044633-14044652 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr6_2:14044631-14044650 | Msa0910240:three_prime_UTR | 30.0% | |
| !! | GGTTTCGAATTTTGATGTTT+TGG | + | chr6_2:14044751-14044770 | Msa0910240:three_prime_UTR | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | - | chr6_2:14044801-14044820 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr6_2:14044802-14044821 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr6_2:14044813-14044832 | Msa0910240:three_prime_UTR | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr6_2:14044814-14044833 | Msa0910240:three_prime_UTR | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr6_2:14044910-14044929 | Msa0910240:three_prime_UTR | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | + | chr6_2:14044920-14044939 | Msa0910240:three_prime_UTR | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr6_2:14044978-14044997 | Msa0910240:three_prime_UTR | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr6_2:14045145-14045164 | Msa0910240:three_prime_UTR | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr6_2:14045193-14045212 | Msa0910240:three_prime_UTR | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr6_2:14045301-14045320 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr6_2:14045308-14045327 | Msa0910240:three_prime_UTR | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr6_2:14045319-14045338 | None:intergenic | 30.0% | |
| ! | GAGGCTTTAATAATTTAAGC+GGG | + | chr6_2:14045418-14045437 | Msa0910240:three_prime_UTR | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | + | chr6_2:14045461-14045480 | Msa0910240:three_prime_UTR | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | + | chr6_2:14045479-14045498 | Msa0910240:three_prime_UTR | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr6_2:14042571-14042590 | Msa0910240:exon | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | + | chr6_2:14042599-14042618 | Msa0910240:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr6_2:14042756-14042775 | Msa0910240:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr6_2:14042839-14042858 | Msa0910240:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr6_2:14042876-14042895 | Msa0910240:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr6_2:14042917-14042936 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr6_2:14043091-14043110 | Msa0910240:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr6_2:14043153-14043172 | Msa0910240:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr6_2:14043535-14043554 | Msa0910240:intron | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr6_2:14043655-14043674 | None:intergenic | 35.0% |
| TGTACAGAGCACAAATTCTA+AGG | - | chr6_2:14043664-14043683 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr6_2:14043939-14043958 | Msa0910240:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr6_2:14043982-14044001 | Msa0910240:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr6_2:14044111-14044130 | Msa0910240:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr6_2:14044315-14044334 | Msa0910240:three_prime_UTR | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr6_2:14044328-14044347 | Msa0910240:three_prime_UTR | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr6_2:14044398-14044417 | Msa0910240:three_prime_UTR | 35.0% |
| AATCAAACAAGTGAATGGTC+TGG | - | chr6_2:14044434-14044453 | None:intergenic | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | + | chr6_2:14044468-14044487 | Msa0910240:three_prime_UTR | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr6_2:14044469-14044488 | Msa0910240:three_prime_UTR | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr6_2:14044803-14044822 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | + | chr6_2:14044923-14044942 | Msa0910240:three_prime_UTR | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr6_2:14044980-14044999 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr6_2:14044981-14045000 | Msa0910240:three_prime_UTR | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | + | chr6_2:14045034-14045053 | Msa0910240:three_prime_UTR | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr6_2:14045247-14045266 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr6_2:14045374-14045393 | Msa0910240:three_prime_UTR | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr6_2:14045399-14045418 | Msa0910240:three_prime_UTR | 35.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr6_2:14042610-14042629 | Msa0910240:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr6_2:14042890-14042909 | None:intergenic | 40.0% |
| GAAAAACTAGAGGAAAGGGT+TGG | + | chr6_2:14042944-14042963 | Msa0910240:CDS | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr6_2:14043160-14043179 | Msa0910240:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | + | chr6_2:14043234-14043253 | Msa0910240:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr6_2:14043364-14043383 | Msa0910240:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr6_2:14043782-14043801 | Msa0910240:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr6_2:14043786-14043805 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr6_2:14043906-14043925 | Msa0910240:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr6_2:14044047-14044066 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr6_2:14044046-14044065 | Msa0910240:CDS | 40.0% | |
| GACCTACTTCAGACTTTAAG+TGG | + | chr6_2:14044282-14044301 | Msa0910240:three_prime_UTR | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | - | chr6_2:14044287-14044306 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr6_2:14044327-14044346 | Msa0910240:three_prime_UTR | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr6_2:14044487-14044506 | Msa0910240:three_prime_UTR | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr6_2:14044496-14044515 | Msa0910240:three_prime_UTR | 40.0% |
| ATCCCAATAGTCAGCTTATG+CGG | + | chr6_2:14044546-14044565 | Msa0910240:three_prime_UTR | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr6_2:14044644-14044663 | Msa0910240:three_prime_UTR | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr6_2:14044645-14044664 | Msa0910240:three_prime_UTR | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | + | chr6_2:14044767-14044786 | Msa0910240:three_prime_UTR | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr6_2:14044876-14044895 | Msa0910240:three_prime_UTR | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr6_2:14044877-14044896 | Msa0910240:three_prime_UTR | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr6_2:14045022-14045041 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr6_2:14045047-14045066 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr6_2:14045071-14045090 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr6_2:14045156-14045175 | Msa0910240:three_prime_UTR | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr6_2:14045239-14045258 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr6_2:14045325-14045344 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr6_2:14045387-14045406 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr6_2:14042902-14042921 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr6_2:14042956-14042975 | Msa0910240:CDS | 45.0% |
| CTCAAGTAACGCAAATGCTC+TGG | - | chr6_2:14043064-14043083 | None:intergenic | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr6_2:14043301-14043320 | Msa0910240:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr6_2:14043342-14043361 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr6_2:14043668-14043687 | Msa0910240:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr6_2:14044333-14044352 | Msa0910240:three_prime_UTR | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr6_2:14044350-14044369 | Msa0910240:three_prime_UTR | 45.0% |
| GACCGCATAAGCTGACTATT+GGG | - | chr6_2:14044551-14044570 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | + | chr6_2:14044783-14044802 | Msa0910240:three_prime_UTR | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr6_2:14044796-14044815 | None:intergenic | 45.0% | |
| GGGTTGTCACAGTTGACATT+AGG | + | chr6_2:14044834-14044853 | Msa0910240:three_prime_UTR | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr6_2:14044878-14044897 | Msa0910240:three_prime_UTR | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr6_2:14044898-14044917 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr6_2:14045168-14045187 | Msa0910240:three_prime_UTR | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | + | chr6_2:14045269-14045288 | Msa0910240:three_prime_UTR | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr6_2:14043166-14043185 | Msa0910240:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | + | chr6_2:14043240-14043259 | Msa0910240:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | + | chr6_2:14043243-14043262 | Msa0910240:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr6_2:14044050-14044069 | Msa0910240:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr6_2:14044054-14044073 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr6_2:14044118-14044137 | Msa0910240:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr6_2:14044119-14044138 | Msa0910240:CDS | 50.0% | |
| GGACCGCATAAGCTGACTAT+TGG | - | chr6_2:14044552-14044571 | None:intergenic | 50.0% | |
| CGCAAACACGTGTAGAAAGC+TGG | - | chr6_2:14045114-14045133 | None:intergenic | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr6_2:14045120-14045139 | Msa0910240:three_prime_UTR | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr6_2:14045161-14045180 | Msa0910240:three_prime_UTR | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | + | chr6_2:14045268-14045287 | Msa0910240:three_prime_UTR | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr6_2:14045283-14045302 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr6_2:14043169-14043188 | Msa0910240:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr6_2:14043247-14043266 | Msa0910240:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr6_2:14044067-14044086 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr6_2:14045160-14045179 | Msa0910240:three_prime_UTR | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr6_2:14045174-14045193 | Msa0910240:three_prime_UTR | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr6_2:14043174-14043193 | Msa0910240:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr6_2:14045123-14045142 | Msa0910240:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 14042545 | 14045587 | 14042545 | ID=Msa0910240;Name=Msa0910240 |
| chr6_2 | mRNA | 14042545 | 14045587 | 14042545 | ID=Msa0910240-mRNA-1;Parent=Msa0910240;Name=Msa0910240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=45|1|1|1|1|1|2|1358|398 |
| chr6_2 | exon | 14042545 | 14043472 | 14042545 | ID=Msa0910240-mRNA-1:exon:3156;Parent=Msa0910240-mRNA-1 |
| chr6_2 | exon | 14043916 | 14045587 | 14043916 | ID=Msa0910240-mRNA-1:exon:3157;Parent=Msa0910240-mRNA-1 |
| chr6_2 | five_prime_UTR | 14042545 | 14042589 | 14042545 | ID=Msa0910240-mRNA-1:five_prime_utr;Parent=Msa0910240-mRNA-1 |
| chr6_2 | CDS | 14042590 | 14043472 | 14042590 | ID=Msa0910240-mRNA-1:cds;Parent=Msa0910240-mRNA-1 |
| chr6_2 | CDS | 14043916 | 14044229 | 14043916 | ID=Msa0910240-mRNA-1:cds;Parent=Msa0910240-mRNA-1 |
| chr6_2 | three_prime_UTR | 14044230 | 14045587 | 14044230 | ID=Msa0910240-mRNA-1:three_prime_utr;Parent=Msa0910240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
