AlfalfaGEDB | Msa0911620

M. sativa cultivar zhongmu-4 / Msa0911620

KEGG: K04730
GO: GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0061458
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911620	AES95477.1	26.849	365	214	8	58	383	91	441	3.10e-20	108
Msa0911620	AES95477.1	33.333	249	154	5	130	370	84	328	5.91e-24	120
Msa0911620	AES95477.1	73.466	554	130	1	1	554	250	786	0.0	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911620	sp\|C0LGP4\|Y3475_ARATH	45.045	555	295	5	2	548	244	796	1.20e-150	466
Msa0911620	sp\|C0LGP4\|Y3475_ARATH	32.637	383	218	7	3	353	100	474	2.67e-37	153
Msa0911620	sp\|C0LGP4\|Y3475_ARATH	27.390	387	219	6	21	376	70	425	1.23e-28	126
Msa0911620	sp\|C0LGP4\|Y3475_ARATH	33.333	234	154	2	144	376	67	299	1.82e-23	110
Msa0911620	sp\|C0LGP4\|Y3475_ARATH	36.170	188	119	1	165	352	64	250	6.84e-21	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911620	MtrunA17_Chr2g0300201	70.567	564	165	1	2	564	262	825	0.0	782
Msa0911620	MtrunA17_Chr2g0300201	33.148	359	223	8	27	376	142	492	1.48e-35	144
Msa0911620	MtrunA17_Chr2g0300201	32.044	362	221	10	28	376	95	444	1.97e-31	131
Msa0911620	MtrunA17_Chr2g0300201	33.862	189	124	1	167	355	84	271	7.40e-15	79.0
Msa0911620	MtrunA17_Chr6g0464171	69.504	564	171	1	2	564	262	825	0.0	768
Msa0911620	MtrunA17_Chr6g0464171	32.312	359	226	8	27	376	142	492	6.39e-35	142
Msa0911620	MtrunA17_Chr6g0464171	32.410	361	221	9	28	376	95	444	1.47e-30	129
Msa0911620	MtrunA17_Chr6g0464171	30.263	228	157	2	144	370	85	311	5.44e-17	85.5
Msa0911620	MtrunA17_Chr5g0408801	70.758	554	161	1	1	553	261	814	0.0	766
Msa0911620	MtrunA17_Chr5g0408801	31.579	361	226	9	27	376	142	492	3.47e-34	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0911620	AT3G47570.1	45.045	555	295	5	2	548	244	796	1.22e-151	466
Msa0911620	AT3G47570.1	32.637	383	218	7	3	353	100	474	2.71e-38	153
Msa0911620	AT3G47570.1	27.390	387	219	6	21	376	70	425	1.25e-29	126
Msa0911620	AT3G47570.1	33.333	234	154	2	144	376	67	299	1.85e-24	110
Msa0911620	AT3G47570.1	36.170	188	119	1	165	352	64	250	6.95e-22	101
Msa0911620	AT3G47090.1	44.946	554	296	6	2	548	244	795	1.36e-145	451
Msa0911620	AT3G47090.1	32.391	389	242	8	2	382	148	523	1.20e-37	151
Msa0911620	AT3G47090.1	33.060	366	202	8	33	365	82	437	1.69e-33	138
Msa0911620	AT3G47090.1	33.032	221	146	2	158	377	81	300	6.89e-20	95.5
Msa0911620	AT3G47580.1	43.268	557	299	9	4	548	246	797	6.20e-133	417

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Find 161 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGCTTAGAACAA+TGG	0.622145	6_2:+18638395	Msa0911620:CDS
AACAACTGATCAACTAGCAA+AGG	0.586787	6_2:+18638087	Msa0911620:CDS
AACTGCACCAAGGAACTGAT+GGG	0.621338	6_2:+18638122	Msa0911620:CDS
AAGAATACATCCAGGATTCA+AGG	0.514875	6_2:+18639765	Msa0911620:CDS
AAGAATTCCCTTGCAATTGA+AGG	0.415766	6_2:-18637661	None:intergenic
AAGCATTTGTAATGGAAATG+GGG	0.585874	6_2:-18636884	None:intergenic
AAGGGTCAAGTCCAGACAGG+TGG	0.666482	6_2:+18639310	Msa0911620:CDS
AAGTCATCAATGCACAGGAA+CGG	0.645040	6_2:+18639382	Msa0911620:CDS
AATAGAGATTGGGGAGAGTG+TGG	0.448503	6_2:-18636824	None:intergenic
AATATGTAAAACAGAGAGTA+TGG	0.380829	6_2:-18637141	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCAAAGTAATAGAGATTG+GGG	-	chr6_2:18636836-18636855	None:intergenic	30.0%
TGACGTTATTTGATATCAGT+TGG	+	chr6_2:18636913-18636932	Msa0911620:CDS	30.0%
TAAAAACTCCAAATCCTTAG+TGG	-	chr6_2:18637027-18637046	None:intergenic	30.0%
ACTACCTCCAAAATTATTCT+GGG	-	chr6_2:18637093-18637112	None:intergenic	30.0%
TACTACCTCCAAAATTATTC+TGG	-	chr6_2:18637094-18637113	None:intergenic	30.0%
GGAAAAATTCCTAGTGAATT+AGG	+	chr6_2:18637182-18637201	Msa0911620:CDS	30.0%
GTTAGATTTCCTAATTCACT+AGG	-	chr6_2:18637194-18637213	None:intergenic	30.0%
TTCCAAATGGTTATTATGCA+TGG	-	chr6_2:18637234-18637253	None:intergenic	30.0%
ATGCATAATAACCATTTGGA+AGG	+	chr6_2:18637233-18637252	Msa0911620:CDS	30.0%
GAAACTTACCAAATGTTGTT+GGG	-	chr6_2:18637265-18637284	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	18636786	18640279	18636786	ID=Msa0911620;Name=Msa0911620
chr6_2	mRNA	18636786	18640279	18636786	ID=Msa0911620-mRNA-1;Parent=Msa0911620;Name=Msa0911620-mRNA-1;_AED=0.80;_eAED=0.80;_QI=0\|0\|0\|0.2\|1\|1\|5\|0\|705
chr6_2	exon	18636786	18638449	18636786	ID=Msa0911620-mRNA-1:exon:3827;Parent=Msa0911620-mRNA-1
chr6_2	exon	18639230	18639403	18639230	ID=Msa0911620-mRNA-1:exon:3828;Parent=Msa0911620-mRNA-1
chr6_2	exon	18639565	18639685	18639565	ID=Msa0911620-mRNA-1:exon:3829;Parent=Msa0911620-mRNA-1
chr6_2	exon	18639758	18639827	18639758	ID=Msa0911620-mRNA-1:exon:3830;Parent=Msa0911620-mRNA-1
chr6_2	exon	18640191	18640279	18640191	ID=Msa0911620-mRNA-1:exon:3831;Parent=Msa0911620-mRNA-1
chr6_2	CDS	18636786	18638449	18636786	ID=Msa0911620-mRNA-1:cds;Parent=Msa0911620-mRNA-1
chr6_2	CDS	18639230	18639403	18639230	ID=Msa0911620-mRNA-1:cds;Parent=Msa0911620-mRNA-1
chr6_2	CDS	18639565	18639685	18639565	ID=Msa0911620-mRNA-1:cds;Parent=Msa0911620-mRNA-1
chr6_2	CDS	18639758	18639827	18639758	ID=Msa0911620-mRNA-1:cds;Parent=Msa0911620-mRNA-1
chr6_2	CDS	18640191	18640279	18640191	ID=Msa0911620-mRNA-1:cds;Parent=Msa0911620-mRNA-1

Gene Sequence

>Msa0911620

ATGAATAACTTTAGGGACTCTCTTCCACCCAATATATTCCACACTCTCCCCAATCTCTATTACTTTGCAATTGGAGGAAATCAATTCTCTGGTCCAATCCCCATTTCCATTACAAATGCTTCAAGTTTGACGTTATTTGATATCAGTTGGAACCATTTCGTCGGACAAGTTCCATATCTAGGGAAGCTACAAGGACTTCGGTGGCTAGCTTTGCAAGTAAACAACTTAGGTGACAACTCCACTAAGGATTTGGAGTTTTTAAAGTCACTGACAAACTCTAGTAAGTTGCAAATTCTCTCTTTGTCCCAGAATAATTTTGGAGGTAGTATGCCAAATGTTGTAGTTAATTTATCCACCATACTCTCTGTTTTACATATTGGGAGTAATCAAATATATGGAAAAATTCCTAGTGAATTAGGAAATCTAACTCGCTTGTGTCTCTTGGCCATGCATAATAACCATTTGGAAGGAACGATCCCAACAACATTTGGTAAGTTTCAAAACATAGAAATGTTAGTATTGAGTGAAAACAAGTTATCAGGGAAAATACCGGCCGTCATTGGCAATCTCAGTCGACTGTATGATTTACGACTAGATGTAAATATGTTAGAAGGGAATATTCCTCCAGATATAGTAATTTGTCAAATCTTACAGAACCTAAACTTTGCACAAAACAACCTTAGAGGATCTATACCTTTAGAGATTTTTAGTATTTCCTCTTTGACAATTTCACTAGATTTGTCACGAAATTTATTGAGTGGTAGCTTACCGAAAGAAGTGTGTATGCTAAAAAATCTTGATTCTCTAGACTTCTATGAGAATCATTTGTCTGGGGAGATTCCTGGAACCATTAGTGAATGCATAAGCTTAGAATACCTTCAATTGCAAGGGAATTCTTTCAACGGAACAATACCATCCTCTTTGGCTGCTCTGAAAGGTCTTCGATATTTAGATCTTTCAAGAAATCATTTGTATGGACCAATTCCTGATGTTATGCAGAATATATCTGGTTTAGAACACTTAAATGTCTCTTTTAACATGTTTGAAGGTGAAGTACCAACAAACAGTGTCTTTGTAAATGCAACCCAATTAGCAATCATTGGAAACAATAAGCTTTGTGGAGGTATTTCAGAGTTGCATCTACCACCATGCCCTATCAAGGGTTGGAAACACACAAAAAACCATAATTTCAAGTTGATTGCAGTGATAGTTAGTGTGGTTTCTATTCTTCTCGTACTTTCATTAATTATAGCTATTTGCTGGATGAGTAAAAGAAACCAAAAATCGTATTTTGATTCACCAACAACTGATCAACTAGCAAAGGTTTCATACCAAGAACTGCACCAAGGAACTGATGGGTTCTCGGATAGAAACATAATCGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTTTCAGAAGATAATGTTGTTGCAGTCAAGGTCTTGAACCTCCAAAAGAAGGGAGCTCACAATAGTTTCATTTTTGAATGTAATGCACTCAAAAATATTCGACACCGAAATTTAGTTAAGGTTTTAACATATTGTTCGAGTACAGATTACAAAGGTCAAGAGTTTAAAGCTCTGGTGTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTCAGATTTTAAATGCAGAGCCTCTTCCAGTCCTTTTTTCGAATTACAGAATGGTCCATGAAATTTTCAACAATTGCAGAAAGACCCCCAAGTCCCAAACTCAGCAAGGGTCAAGTCCAGACAGGTGGCAAGCTACCATTGGCCACCAAGGCCACATGGCAGCCTATATAAGGGACCAAGTCATCAATGCACAGGAACGTTCTCAGAGATTCATCACTGAATCTTCATCATCGAACTTGAAACACTGCAATTCCAGTGTGAATTCGCCACCAAAGCAGCAAATCCACACGATCACAGTGGAGAAGACGAAGAAATCGAAGAAGCATCAAGAATACATCCAGGATTCAAGGTTTCTGAAGAATCTCGTTCGAATCTCCAAATCAAACTCAAGTGTGGTGGCGCCACCGGCGAGCCACCACACCTCCGCCGTTGTGTTCATCGGAGAGGACGAAGAGAGATTGCAGAGCATCTCTCTCTAG

Protein sequence

>Msa0911620

MNNFRDSLPPNIFHTLPNLYYFAIGGNQFSGPIPISITNASSLTLFDISWNHFVGQVPYLGKLQGLRWLALQVNNLGDNSTKDLEFLKSLTNSSKLQILSLSQNNFGGSMPNVVVNLSTILSVLHIGSNQIYGKIPSELGNLTRLCLLAMHNNHLEGTIPTTFGKFQNIEMLVLSENKLSGKIPAVIGNLSRLYDLRLDVNMLEGNIPPDIVICQILQNLNFAQNNLRGSIPLEIFSISSLTISLDLSRNLLSGSLPKEVCMLKNLDSLDFYENHLSGEIPGTISECISLEYLQLQGNSFNGTIPSSLAALKGLRYLDLSRNHLYGPIPDVMQNISGLEHLNVSFNMFEGEVPTNSVFVNATQLAIIGNNKLCGGISELHLPPCPIKGWKHTKNHNFKLIAVIVSVVSILLVLSLIIAICWMSKRNQKSYFDSPTTDQLAKVSYQELHQGTDGFSDRNIIGSGSFGSVYKGNLVSEDNVVAVKVLNLQKKGAHNSFIFECNALKNIRHRNLVKVLTYCSSTDYKGQEFKALVFDYMKNGSLEQWLHPQILNAEPLPVLFSNYRMVHEIFNNCRKTPKSQTQQGSSPDRWQATIGHQGHMAAYIRDQVINAQERSQRFITESSSSNLKHCNSSVNSPPKQQIHTITVEKTKKSKKHQEYIQDSRFLKNLVRISKSNSSVVAPPASHHTSAVVFIGEDEERLQSISL*