Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912950 | MtrunA17_Chr3g0140631 | 71.795 | 39 | 10 | 1 | 20 | 58 | 149 | 186 | 1.10e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0912950 | AT2G25880.1 | 71.795 | 39 | 10 | 1 | 20 | 58 | 137 | 174 | 1.09e-11 | 63.2 |
| Msa0912950 | AT2G25880.4 | 71.795 | 39 | 10 | 1 | 20 | 58 | 150 | 187 | 1.26e-11 | 63.2 |
| Msa0912950 | AT4G32830.1 | 71.795 | 39 | 10 | 1 | 20 | 58 | 143 | 180 | 1.37e-11 | 63.2 |
| Msa0912950 | AT2G25880.3 | 71.795 | 39 | 10 | 1 | 20 | 58 | 198 | 235 | 1.47e-11 | 63.2 |
Find 80 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACATGTTAAAGATTT+TGG | 0.132587 | 6_2:-22701599 | Msa0912950:CDS |
| GCTTTCGAGTTTGTGTTTAT+TGG | 0.221634 | 6_2:-22702345 | Msa0912950:five_prime_UTR |
| TTGAAGGGACTGACATTAAT+TGG | 0.227152 | 6_2:-22702548 | Msa0912950:five_prime_UTR |
| AAACCAGAGAACCTTCTTAT+TGG | 0.231506 | 6_2:-22701964 | Msa0912950:CDS |
| TTTGAGATAAAGGGCTTATT+AGG | 0.254512 | 6_2:-22702838 | Msa0912950:five_prime_UTR |
| TCTTCATCTTTCTCCTCCTT+TGG | 0.289487 | 6_2:-22700552 | Msa0912950:CDS |
| CATAAGCTGATTTGAGATAA+AGG | 0.316732 | 6_2:-22702848 | Msa0912950:five_prime_UTR |
| ACACATACCATTCAGCTCTT+TGG | 0.329240 | 6_2:-22700401 | Msa0912950:CDS |
| GGTTCGTCTTTCTCCTCCTT+TGG | 0.349347 | 6_2:-22700531 | Msa0912950:CDS |
| AGCCATGTTGCCAGATGAAA+TGG | 0.356502 | 6_2:-22702183 | Msa0912950:CDS |
| AGGTGATGGTGCTGCATCAT+TGG | 0.357407 | 6_2:-22702408 | Msa0912950:five_prime_UTR |
| GGTTCATCTTTCTCCTCCTT+CGG | 0.375320 | 6_2:-22700510 | Msa0912950:CDS |
| CTGTCATTGAAGGGAAGGTT+TGG | 0.377281 | 6_2:-22703250 | Msa0912950:five_prime_UTR |
| TTGCCAAGGCCCATTTCATC+TGG | 0.382428 | 6_2:+22702173 | None:intergenic |
| CTCATAGACATAAGACTTCA+AGG | 0.389555 | 6_2:+22701558 | None:intergenic |
| TAAACTTAAGCTAGCGGACT+TGG | 0.390922 | 6_2:-22701836 | Msa0912950:CDS |
| CAAGAAACGGTTGAGGTAAA+GGG | 0.393431 | 6_2:-22702762 | Msa0912950:five_prime_UTR |
| ATAAGCTGATTTGAGATAAA+GGG | 0.396022 | 6_2:-22702847 | Msa0912950:five_prime_UTR |
| TCTTTCTCCTCCTTCGGCTC+TGG | 0.398525 | 6_2:-22700504 | Msa0912950:intron |
| AAGCATGCTGATGGGGCTGC+TGG | 0.411338 | 6_2:-22703219 | Msa0912950:intron |
| GGGCCTTGGCAAAACAGTTC+AGG | 0.413248 | 6_2:-22702162 | Msa0912950:intron |
| CATCATTGGGTTCATTGTTG+TGG | 0.432393 | 6_2:-22702394 | Msa0912950:five_prime_UTR |
| GGTGATGGTGCTGCATCATT+GGG | 0.433123 | 6_2:-22702407 | Msa0912950:five_prime_UTR |
| TCAAGAAACGGTTGAGGTAA+AGG | 0.443771 | 6_2:-22702763 | Msa0912950:five_prime_UTR |
| ATACAAAACTCTGTCATTGA+AGG | 0.454440 | 6_2:-22703260 | None:intergenic |
| TGCATACATTCGATCGCAAC+CGG | 0.454626 | 6_2:-22701805 | Msa0912950:CDS |
| TGTAGGATAATGTGGTTTGA+AGG | 0.462219 | 6_2:-22702564 | Msa0912950:intron |
| GCTTATGCCTTCAAAATGTA+AGG | 0.476709 | 6_2:+22702864 | None:intergenic |
| GCACCAATAAGAAGGTTCTC+TGG | 0.479972 | 6_2:+22701961 | None:intergenic |
| CTTTGTTATGTAGGATAATG+TGG | 0.501662 | 6_2:-22702572 | Msa0912950:intron |
| TAATATTGAAGTTCAAGAAA+CGG | 0.509357 | 6_2:-22702775 | Msa0912950:five_prime_UTR |
| TTGCCAGATGAAATGGGCCT+TGG | 0.512607 | 6_2:-22702176 | Msa0912950:CDS |
| TGATTACCTTCCACCTGGGA+TGG | 0.518845 | 6_2:-22701765 | Msa0912950:CDS |
| ATGCGGTGAAGCATGCTGAT+GGG | 0.528350 | 6_2:-22703227 | Msa0912950:five_prime_UTR |
| GGAGGAGAAAGACGAACCAA+AGG | 0.531849 | 6_2:+22700536 | None:intergenic |
| GTAGGATAATGTGGTTTGAA+GGG | 0.532173 | 6_2:-22702563 | Msa0912950:intron |
| CATGTGTGTTGCACATGGTC+CGG | 0.536084 | 6_2:+22701786 | None:intergenic |
| GATGCGGTGAAGCATGCTGA+TGG | 0.536359 | 6_2:-22703228 | Msa0912950:five_prime_UTR |
| TTGAGTACCAAAGAGCTGAA+TGG | 0.536416 | 6_2:+22700394 | None:intergenic |
| AAACTCTGTCATTGAAGGGA+AGG | 0.541765 | 6_2:-22703255 | None:intergenic |
| ATTCAGCTCTTTGGTACTCA+AGG | 0.549171 | 6_2:-22700392 | Msa0912950:CDS |
| GAATGGTATGTGTTTCCTCT+CGG | 0.552032 | 6_2:+22700411 | None:intergenic |
| GGAGGAGAAAGATGAACCAA+AGG | 0.555072 | 6_2:+22700515 | None:intergenic |
| TCACTTGTGCACCAATAAGA+AGG | 0.556527 | 6_2:+22701953 | None:intergenic |
| ACACATGATTACCTTCCACC+TGG | 0.558943 | 6_2:-22701770 | Msa0912950:CDS |
| CCTCTGAAAGCTATTAGCAC+TGG | 0.561326 | 6_2:+22701420 | None:intergenic |
| GCCCATTTCATCTGGCAACA+TGG | 0.565590 | 6_2:+22702181 | None:intergenic |
| TGGCGACGGACTCACTGTGG+TGG | 0.567412 | 6_2:-22702728 | Msa0912950:five_prime_UTR |
| GATTACCTTCCACCTGGGAT+GGG | 0.571192 | 6_2:-22701764 | Msa0912950:intron |
| TAAAGGGCTTATTAGGTGCA+AGG | 0.574732 | 6_2:-22702831 | Msa0912950:five_prime_UTR |
| TGCGGTGAAGCATGCTGATG+GGG | 0.582053 | 6_2:-22703226 | Msa0912950:five_prime_UTR |
| TGAAGTTCAAGAAACGGTTG+AGG | 0.582460 | 6_2:-22702769 | Msa0912950:five_prime_UTR |
| GCCATGTTGCCAGATGAAAT+GGG | 0.585539 | 6_2:-22702182 | Msa0912950:CDS |
| TGTGTATGACATGCTTTCCA+TGG | 0.587218 | 6_2:+22701995 | None:intergenic |
| CTTAAGCTAGCGGACTTGGA+TGG | 0.588752 | 6_2:-22701832 | Msa0912950:CDS |
| TACAAAACTCTGTCATTGAA+GGG | 0.593162 | 6_2:-22703259 | None:intergenic |
| TATGCAAGAATATCACACTA+AGG | 0.596568 | 6_2:-22702525 | Msa0912950:intron |
| GGCGACGGACTCACTGTGGT+GGG | 0.598765 | 6_2:-22702727 | Msa0912950:five_prime_UTR |
| GGAGAAAGACGAACCAAAGG+AGG | 0.606517 | 6_2:+22700539 | None:intergenic |
| TTGAAGGGAAGGTTTGGATG+CGG | 0.610256 | 6_2:-22703244 | Msa0912950:five_prime_UTR |
| AAAGGGCTTATTAGGTGCAA+GGG | 0.615943 | 6_2:-22702830 | Msa0912950:five_prime_UTR |
| TGACTATGAAACTGATGAGG+AGG | 0.618261 | 6_2:+22700578 | None:intergenic |
| GGGCTTCTGAACGTTGGCGA+CGG | 0.624809 | 6_2:-22702742 | Msa0912950:five_prime_UTR |
| ACATACCCATCCCAGGTGGA+AGG | 0.625505 | 6_2:+22701759 | None:intergenic |
| ATGGAAAGCATGTCATACAC+AGG | 0.629529 | 6_2:-22701993 | Msa0912950:CDS |
| GGTAAAGGGCTTCTGAACGT+TGG | 0.630349 | 6_2:-22702748 | Msa0912950:five_prime_UTR |
| CAACTGAACATACCCATCCC+AGG | 0.631602 | 6_2:+22701752 | None:intergenic |
| ACTCGAAAGCTGCAAACACA+CGG | 0.632169 | 6_2:+22702358 | None:intergenic |
| TTCTGACTATGAAACTGATG+AGG | 0.634392 | 6_2:+22700575 | None:intergenic |
| CACATGATTACCTTCCACCT+GGG | 0.639824 | 6_2:-22701769 | Msa0912950:CDS |
| TGGAAAACCAGAGCCGAAGG+AGG | 0.640493 | 6_2:+22700497 | None:intergenic |
| TCTAGTAGTGTATACTACCA+TGG | 0.648345 | 6_2:-22702012 | Msa0912950:CDS |
| GGAGAAAGATGAACCAAAGG+AGG | 0.649455 | 6_2:+22700518 | None:intergenic |
| ATAAAATAATTCAGACCGAG+AGG | 0.655199 | 6_2:-22700426 | Msa0912950:intron |
| TCAGGGTAAACTTAAGCTAG+CGG | 0.660725 | 6_2:-22701842 | Msa0912950:intron |
| GTAATCATGTGTGTTGCACA+TGG | 0.670900 | 6_2:+22701781 | None:intergenic |
| CCAGTGCTAATAGCTTTCAG+AGG | 0.672692 | 6_2:-22701420 | Msa0912950:CDS |
| TGGAAAGCATGTCATACACA+GGG | 0.695433 | 6_2:-22701992 | Msa0912950:CDS |
| CTGAACATACCCATCCCAGG+TGG | 0.731337 | 6_2:+22701755 | None:intergenic |
| CGTTGGCGACGGACTCACTG+TGG | 0.733591 | 6_2:-22702731 | Msa0912950:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCATACTTTTTATGTT+AGG | - | chr6_2:22701873-22701892 | Msa0912950:intron | 15.0% |
| !!! | GTTTTTTTTTTCTTTATGTT+CGG | - | chr6_2:22702101-22702120 | Msa0912950:intron | 15.0% |
| !!! | AAATAACCAATGTTTTATTT+TGG | + | chr6_2:22703121-22703140 | None:intergenic | 15.0% |
| !!! | AAATAAAACATTGGTTATTT+AGG | - | chr6_2:22703121-22703140 | Msa0912950:intron | 15.0% |
| !! | AATCAATATAATGTCATTGA+AGG | + | chr6_2:22700534-22700553 | None:intergenic | 20.0% |
| !! | TTTAATATGAAATGATTGTG+AGG | - | chr6_2:22700576-22700595 | Msa0912950:CDS | 20.0% |
| !! | ACGAAATCAAAACAAATTAA+TGG | + | chr6_2:22700660-22700679 | None:intergenic | 20.0% |
| !! | TAATATTGAAGTTCAAGAAA+CGG | - | chr6_2:22700820-22700839 | Msa0912950:intron | 20.0% |
| !!! | AATCTAAAGTGAAATTCTTA+GGG | + | chr6_2:22700925-22700944 | None:intergenic | 20.0% |
| !!! | TGTCATATGTTTTTGTTTTT+AGG | - | chr6_2:22701524-22701543 | Msa0912950:intron | 20.0% |
| !!! | TACATACATGTTAAAGATTT+TGG | - | chr6_2:22701996-22702015 | Msa0912950:CDS | 20.0% |
| !!! | CATGTTAAAGATTTTGTTTT+TGG | - | chr6_2:22702079-22702098 | Msa0912950:intron | 20.0% |
| !!! | TAAATTTATTTTCATGCAAC+AGG | - | chr6_2:22702129-22702148 | Msa0912950:intron | 20.0% |
| !!! | CTATGTATTTTACTGTAAAT+TGG | - | chr6_2:22702308-22702327 | Msa0912950:five_prime_UTR | 20.0% |
| !! | GTTATTGAATTATGATATCT+TGG | - | chr6_2:22702433-22702452 | Msa0912950:intron | 20.0% |
| !!! | TTCATACGAATATTTTCTTA+CGG | - | chr6_2:22702462-22702481 | Msa0912950:intron | 20.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr6_2:22700476-22700495 | None:intergenic | 25.0% |
| ! | TCATTATATTCAAAGCCAAT+AGG | - | chr6_2:22700479-22700498 | Msa0912950:intron | 25.0% |
| ! | AAACAAAAAATAGCACCTAT+TGG | + | chr6_2:22700497-22700516 | None:intergenic | 25.0% |
| !!! | AGGTGCTATTTTTTGTTTTT+AGG | - | chr6_2:22700499-22700518 | Msa0912950:intron | 25.0% |
| ! | ATTAAACAAATAGACGACTA+CGG | + | chr6_2:22700562-22700581 | None:intergenic | 25.0% |
| !!! | TTGTTTTGATACTAGTTTCT+TGG | - | chr6_2:22700681-22700700 | Msa0912950:intron | 25.0% |
| !!! | ATAAGCTGATTTGAGATAAA+GGG | - | chr6_2:22700748-22700767 | Msa0912950:intron | 25.0% |
| !! | ATCTAAAGTGAAATTCTTAG+GGG | + | chr6_2:22700924-22700943 | None:intergenic | 25.0% |
| !! | GAATCTAAAGTGAAATTCTT+AGG | + | chr6_2:22700926-22700945 | None:intergenic | 25.0% |
| !!! | CAAATCATGTTTTGAATCTA+AGG | + | chr6_2:22700995-22701014 | None:intergenic | 25.0% |
| ! | AGATTCAAAACATGATTTGA+AGG | - | chr6_2:22700996-22701015 | Msa0912950:intron | 25.0% |
| ! | ATTATGGATTTCTCAATCTT+AGG | - | chr6_2:22701156-22701175 | Msa0912950:intron | 25.0% |
| ! | TTGCCTAAAAACAAACAAAA+GGG | + | chr6_2:22701563-22701582 | None:intergenic | 25.0% |
| ! | ATTGCCTAAAAACAAACAAA+AGG | + | chr6_2:22701564-22701583 | None:intergenic | 25.0% |
| ! | AAACAATAGTCTAAGTATGA+AGG | + | chr6_2:22701669-22701688 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTATGATTCGTT+TGG | - | chr6_2:22701684-22701703 | Msa0912950:intron | 25.0% |
| ! | TGAAAATCTTCTTCATTATC+AGG | - | chr6_2:22701735-22701754 | Msa0912950:intron | 25.0% |
| ! | GAAAATCTTCTTCATTATCA+GGG | - | chr6_2:22701736-22701755 | Msa0912950:intron | 25.0% |
| !! | ATAGAAAGTGTAACAATACA+AGG | + | chr6_2:22702292-22702311 | None:intergenic | 25.0% |
| !!! | CTACTTTTAGCCTAATATAT+TGG | - | chr6_2:22702372-22702391 | Msa0912950:five_prime_UTR | 25.0% |
| ! | AATTGAAGTAAGCTTGAAAA+TGG | + | chr6_2:22702406-22702425 | None:intergenic | 25.0% |
| !!! | TGACGAAAAATTTGTTATAG+AGG | + | chr6_2:22702945-22702964 | None:intergenic | 25.0% |
| !! | GGTTTTCCAAAATAAAACAT+TGG | - | chr6_2:22703112-22703131 | Msa0912950:intron | 25.0% |
| ! | TTGCAATGCTATATGTTTTC+AGG | - | chr6_2:22700435-22700454 | Msa0912950:intron | 30.0% |
| TTGTGAGGAATTTGTATACT+TGG | - | chr6_2:22700591-22700610 | Msa0912950:CDS | 30.0% | |
| ! | ATGTGTACCTTACATTTTGA+AGG | - | chr6_2:22700724-22700743 | Msa0912950:intron | 30.0% |
| !! | CATAAGCTGATTTGAGATAA+AGG | - | chr6_2:22700747-22700766 | Msa0912950:intron | 30.0% |
| ! | TTTGAGATAAAGGGCTTATT+AGG | - | chr6_2:22700757-22700776 | Msa0912950:intron | 30.0% |
| TTAAGAGATTCCTTGCATTA+AGG | - | chr6_2:22700969-22700988 | Msa0912950:intron | 30.0% | |
| ! | CTTTGTTATGTAGGATAATG+TGG | - | chr6_2:22701023-22701042 | Msa0912950:intron | 30.0% |
| TATGCAAGAATATCACACTA+AGG | - | chr6_2:22701070-22701089 | Msa0912950:intron | 30.0% | |
| AATCCATAATGAAAACACAG+TGG | + | chr6_2:22701146-22701165 | None:intergenic | 30.0% | |
| !!! | AAGCTTTGTGGTTTTGATAA+TGG | - | chr6_2:22701311-22701330 | Msa0912950:intron | 30.0% |
| TTGTGCTTTAGTGTTTACTA+TGG | - | chr6_2:22701342-22701361 | Msa0912950:intron | 30.0% | |
| !! | CAACCCTTTTGTTTGTTTTT+AGG | - | chr6_2:22701557-22701576 | Msa0912950:CDS | 30.0% |
| CAAGGAAAAAAATCCATAGA+AGG | + | chr6_2:22701937-22701956 | None:intergenic | 30.0% | |
| ! | ATACGAATATTTTCTTACGG+TGG | - | chr6_2:22702465-22702484 | Msa0912950:intron | 30.0% |
| CTTGTTTATAAAGTTTCCTG+CGG | - | chr6_2:22702523-22702542 | Msa0912950:intron | 30.0% | |
| TGAGGAAATATCTAATTCCT+GGG | - | chr6_2:22702553-22702572 | Msa0912950:five_prime_UTR | 30.0% | |
| ! | GAAAGCATAATATATTCCAC+AGG | + | chr6_2:22702585-22702604 | None:intergenic | 30.0% |
| TAAAGTGAAAATAATCCGCA+GGG | + | chr6_2:22702705-22702724 | None:intergenic | 30.0% | |
| ! | GATTATTTTCACTTTACCTG+AGG | - | chr6_2:22702709-22702728 | Msa0912950:intron | 30.0% |
| TGGTAACAAATATACGCTTT+GGG | - | chr6_2:22702893-22702912 | Msa0912950:five_prime_UTR | 30.0% | |
| !! | CTCGGTCTGAATTATTTTAT+TGG | + | chr6_2:22703169-22703188 | None:intergenic | 30.0% |
| ATAAAATAATTCAGACCGAG+AGG | - | chr6_2:22703169-22703188 | Msa0912950:intron | 30.0% | |
| AGTGGCAAGATATACTATGA+AGG | - | chr6_2:22700400-22700419 | Msa0912950:CDS | 35.0% | |
| CTTCTATTATGCCAAATCTC+AGG | - | chr6_2:22700615-22700634 | Msa0912950:CDS | 35.0% | |
| AGCAAATTGAACCTGAGATT+TGG | + | chr6_2:22700629-22700648 | None:intergenic | 35.0% | |
| GCTTATGCCTTCAAAATGTA+AGG | + | chr6_2:22700734-22700753 | None:intergenic | 35.0% | |
| TGTAGGATAATGTGGTTTGA+AGG | - | chr6_2:22701031-22701050 | Msa0912950:intron | 35.0% | |
| GTAGGATAATGTGGTTTGAA+GGG | - | chr6_2:22701032-22701051 | Msa0912950:intron | 35.0% | |
| TTGAAGGGACTGACATTAAT+TGG | - | chr6_2:22701047-22701066 | Msa0912950:intron | 35.0% | |
| !! | GCTTTCGAGTTTGTGTTTAT+TGG | - | chr6_2:22701250-22701269 | Msa0912950:intron | 35.0% |
| !!! | GCGATTTTTTTGAAGCTTTG+TGG | - | chr6_2:22701299-22701318 | Msa0912950:intron | 35.0% |
| TCTAGTAGTGTATACTACCA+TGG | - | chr6_2:22701583-22701602 | Msa0912950:CDS | 35.0% | |
| AAACCAGAGAACCTTCTTAT+TGG | - | chr6_2:22701631-22701650 | Msa0912950:intron | 35.0% | |
| GGCGAAGTACAAACTATTAA+AGG | + | chr6_2:22701916-22701935 | None:intergenic | 35.0% | |
| TGGAACAAACAATGAACACA+AGG | + | chr6_2:22701955-22701974 | None:intergenic | 35.0% | |
| TTGTGTTCATTGTTTGTTCC+AGG | - | chr6_2:22701954-22701973 | Msa0912950:intron | 35.0% | |
| !! | CTTCAAGGTGTTCTTTTCTT+TGG | + | chr6_2:22702025-22702044 | None:intergenic | 35.0% |
| CTCATAGACATAAGACTTCA+AGG | + | chr6_2:22702040-22702059 | None:intergenic | 35.0% | |
| GGTCGTTAGACCAATATATT+AGG | + | chr6_2:22702385-22702404 | None:intergenic | 35.0% | |
| GGTGGTAATTAGATGTATGA+TGG | - | chr6_2:22702483-22702502 | Msa0912950:intron | 35.0% | |
| CAGGAATTAGATATTTCCTC+AGG | + | chr6_2:22702554-22702573 | None:intergenic | 35.0% | |
| CTGAGGAAATATCTAATTCC+TGG | - | chr6_2:22702552-22702571 | Msa0912950:five_prime_UTR | 35.0% | |
| GAGGAAATATCTAATTCCTG+GGG | - | chr6_2:22702554-22702573 | Msa0912950:five_prime_UTR | 35.0% | |
| GAATTACCTGACGTATATGT+TGG | - | chr6_2:22702629-22702648 | Msa0912950:intron | 35.0% | |
| GTAAAGTGAAAATAATCCGC+AGG | + | chr6_2:22702706-22702725 | None:intergenic | 35.0% | |
| GATTATGTCTTAAATTCCGC+AGG | + | chr6_2:22702846-22702865 | None:intergenic | 35.0% | |
| ! | GAATTTAAGACATAATCCGC+AGG | - | chr6_2:22702849-22702868 | Msa0912950:five_prime_UTR | 35.0% |
| AATTCGAGAGATTCTAGTAG+TGG | - | chr6_2:22702873-22702892 | Msa0912950:five_prime_UTR | 35.0% | |
| GTGGTAACAAATATACGCTT+TGG | - | chr6_2:22702892-22702911 | Msa0912950:five_prime_UTR | 35.0% | |
| ! | CAAATATACGCTTTGGGTTA+TGG | - | chr6_2:22702899-22702918 | Msa0912950:intron | 35.0% |
| TTCTGACTATGAAACTGATG+AGG | + | chr6_2:22703023-22703042 | None:intergenic | 35.0% | |
| ! | TTTTGTCTGTGTTGAACAGA+TGG | + | chr6_2:22703240-22703259 | None:intergenic | 35.0% |
| TAAAGGGCTTATTAGGTGCA+AGG | - | chr6_2:22700764-22700783 | Msa0912950:intron | 40.0% | |
| AAAGGGCTTATTAGGTGCAA+GGG | - | chr6_2:22700765-22700784 | Msa0912950:intron | 40.0% | |
| TGAAGTTCAAGAAACGGTTG+AGG | - | chr6_2:22700826-22700845 | Msa0912950:intron | 40.0% | |
| TCAAGAAACGGTTGAGGTAA+AGG | - | chr6_2:22700832-22700851 | Msa0912950:intron | 40.0% | |
| CAAGAAACGGTTGAGGTAAA+GGG | - | chr6_2:22700833-22700852 | Msa0912950:intron | 40.0% | |
| TCTGTTTGTGTTCTGTTCCA+TGG | - | chr6_2:22700946-22700965 | Msa0912950:intron | 40.0% | |
| TGCAAGGAATCTCTTAACCA+TGG | + | chr6_2:22700966-22700985 | None:intergenic | 40.0% | |
| ! | GAATCTAAGGCCTTAATGCA+AGG | + | chr6_2:22700982-22701001 | None:intergenic | 40.0% |
| ! | GAAGGCTGTCTTTGTTATGT+AGG | - | chr6_2:22701014-22701033 | Msa0912950:intron | 40.0% |
| !! | GTGCCACTGTGTTTTCATTA+TGG | - | chr6_2:22701140-22701159 | Msa0912950:intron | 40.0% |
| CTCAATCTTAGGACTGTTTC+AGG | - | chr6_2:22701167-22701186 | Msa0912950:intron | 40.0% | |
| CATCATTGGGTTCATTGTTG+TGG | - | chr6_2:22701201-22701220 | Msa0912950:intron | 40.0% | |
| TGTGTATGACATGCTTTCCA+TGG | + | chr6_2:22701603-22701622 | None:intergenic | 40.0% | |
| ! | ATGGAAAGCATGTCATACAC+AGG | - | chr6_2:22701602-22701621 | Msa0912950:CDS | 40.0% |
| ! | TGGAAAGCATGTCATACACA+GGG | - | chr6_2:22701603-22701622 | Msa0912950:CDS | 40.0% |
| TCACTTGTGCACCAATAAGA+AGG | + | chr6_2:22701645-22701664 | None:intergenic | 40.0% | |
| TCAGGGTAAACTTAAGCTAG+CGG | - | chr6_2:22701753-22701772 | Msa0912950:intron | 40.0% | |
| !! | TAAACTTAAGCTAGCGGACT+TGG | - | chr6_2:22701759-22701778 | Msa0912950:intron | 40.0% |
| GTAATCATGTGTGTTGCACA+TGG | + | chr6_2:22701817-22701836 | None:intergenic | 40.0% | |
| TTATGTTAGGTGTACTTCGC+AGG | - | chr6_2:22701886-22701905 | Msa0912950:intron | 40.0% | |
| AGTTTGTACTTCGCCTTCTA+TGG | - | chr6_2:22701921-22701940 | Msa0912950:intron | 40.0% | |
| CTGCACTTAACATTAACACC+TGG | + | chr6_2:22701975-22701994 | None:intergenic | 40.0% | |
| !! | TTATGCTTTCGAGTTTCCTG+TGG | - | chr6_2:22702595-22702614 | Msa0912950:intron | 40.0% |
| GTTTCCTGTGGAATTTACTG+CGG | - | chr6_2:22702607-22702626 | Msa0912950:intron | 40.0% | |
| AATTCCGCAGTAAATTCCAC+AGG | + | chr6_2:22702614-22702633 | None:intergenic | 40.0% | |
| TATGTTGGCAGGAAACATCA+CGG | - | chr6_2:22702644-22702663 | Msa0912950:intron | 40.0% | |
| !! | GAAGTTTTGGTCAGGGTTAA+AGG | + | chr6_2:22702683-22702702 | None:intergenic | 40.0% |
| ! | AATAATCCGCAGGGAAGTTT+TGG | + | chr6_2:22702696-22702715 | None:intergenic | 40.0% |
| AGAATCTCTCGAATTTCCTG+CGG | + | chr6_2:22702868-22702887 | None:intergenic | 40.0% | |
| !! | GGTTATGGCTTTGTATCTTC+AGG | - | chr6_2:22702914-22702933 | Msa0912950:intron | 40.0% |
| TGACTATGAAACTGATGAGG+AGG | + | chr6_2:22703020-22703039 | None:intergenic | 40.0% | |
| TCTTCATCTTTCTCCTCCTT+TGG | - | chr6_2:22703043-22703062 | Msa0912950:intron | 40.0% | |
| GAATGGTATGTGTTTCCTCT+CGG | + | chr6_2:22703187-22703206 | None:intergenic | 40.0% | |
| ACACATACCATTCAGCTCTT+TGG | - | chr6_2:22703194-22703213 | Msa0912950:intron | 40.0% | |
| TTGAGTACCAAAGAGCTGAA+TGG | + | chr6_2:22703204-22703223 | None:intergenic | 40.0% | |
| ATTCAGCTCTTTGGTACTCA+AGG | - | chr6_2:22703203-22703222 | Msa0912950:intron | 40.0% | |
| CTGTCATTGAAGGGAAGGTT+TGG | - | chr6_2:22700345-22700364 | Msa0912950:CDS | 45.0% | |
| TTGAAGGGAAGGTTTGGATG+CGG | - | chr6_2:22700351-22700370 | Msa0912950:CDS | 45.0% | |
| ! | CTTAGGACTGTTTCAGGTGA+TGG | - | chr6_2:22701173-22701192 | Msa0912950:intron | 45.0% |
| ACTCGAAAGCTGCAAACACA+CGG | + | chr6_2:22701240-22701259 | None:intergenic | 45.0% | |
| AGCCATGTTGCCAGATGAAA+TGG | - | chr6_2:22701412-22701431 | Msa0912950:CDS | 45.0% | |
| GCCATGTTGCCAGATGAAAT+GGG | - | chr6_2:22701413-22701432 | Msa0912950:CDS | 45.0% | |
| ! | ACACCTGAACTGTTTTGCCA+AGG | + | chr6_2:22701439-22701458 | None:intergenic | 45.0% |
| GCACCAATAAGAAGGTTCTC+TGG | + | chr6_2:22701637-22701656 | None:intergenic | 45.0% | |
| TGCATACATTCGATCGCAAC+CGG | - | chr6_2:22701790-22701809 | Msa0912950:CDS | 45.0% | |
| ACACATGATTACCTTCCACC+TGG | - | chr6_2:22701825-22701844 | Msa0912950:CDS | 45.0% | |
| CACATGATTACCTTCCACCT+GGG | - | chr6_2:22701826-22701845 | Msa0912950:CDS | 45.0% | |
| ! | CCTCTGAAAGCTATTAGCAC+TGG | + | chr6_2:22702178-22702197 | None:intergenic | 45.0% |
| CCAGTGCTAATAGCTTTCAG+AGG | - | chr6_2:22702175-22702194 | Msa0912950:CDS | 45.0% | |
| ATTTCCTCAGGTAAATCCGC+AGG | + | chr6_2:22702542-22702561 | None:intergenic | 45.0% | |
| AATTCCTGGGGATTTACCTG+TGG | - | chr6_2:22702566-22702585 | Msa0912950:intron | 45.0% | |
| TATTCCACAGGTAAATCCCC+AGG | + | chr6_2:22702573-22702592 | None:intergenic | 45.0% | |
| TACCTGACGTATATGTTGGC+AGG | - | chr6_2:22702633-22702652 | Msa0912950:intron | 45.0% | |
| TTCCTGCCAACATATACGTC+AGG | + | chr6_2:22702638-22702657 | None:intergenic | 45.0% | |
| ATGTTGGCAGGAAACATCAC+GGG | - | chr6_2:22702645-22702664 | Msa0912950:intron | 45.0% | |
| GTACTTGCGGAAATTTCCTC+AGG | + | chr6_2:22702728-22702747 | None:intergenic | 45.0% | |
| TTCCGCAAGTACATTTCCTG+CGG | - | chr6_2:22702736-22702755 | Msa0912950:five_prime_UTR | 45.0% | |
| AACCGCAGGAAATGTACTTG+CGG | + | chr6_2:22702741-22702760 | None:intergenic | 45.0% | |
| !! | TTACCCACGAAGGTATTACC+TGG | - | chr6_2:22702781-22702800 | Msa0912950:five_prime_UTR | 45.0% |
| !! | TACCCACGAAGGTATTACCT+GGG | - | chr6_2:22702782-22702801 | Msa0912950:five_prime_UTR | 45.0% |
| TTCCCAGGTAATACCTTCGT+GGG | + | chr6_2:22702787-22702806 | None:intergenic | 45.0% | |
| GGAGAAAGATGAACCAAAGG+AGG | + | chr6_2:22703080-22703099 | None:intergenic | 45.0% | |
| GGAGGAGAAAGATGAACCAA+AGG | + | chr6_2:22703083-22703102 | None:intergenic | 45.0% | |
| GGTTCATCTTTCTCCTCCTT+CGG | - | chr6_2:22703085-22703104 | Msa0912950:intron | 45.0% | |
| !! | TTTTGGAAAACCAGAGCCGA+AGG | + | chr6_2:22703104-22703123 | None:intergenic | 45.0% |
| ATGCGGTGAAGCATGCTGAT+GGG | - | chr6_2:22700368-22700387 | Msa0912950:CDS | 50.0% | |
| GGTAAAGGGCTTCTGAACGT+TGG | - | chr6_2:22700847-22700866 | Msa0912950:intron | 50.0% | |
| !! | AGGTGATGGTGCTGCATCAT+TGG | - | chr6_2:22701187-22701206 | Msa0912950:intron | 50.0% |
| !! | GGTGATGGTGCTGCATCATT+GGG | - | chr6_2:22701188-22701207 | Msa0912950:intron | 50.0% |
| GCCCATTTCATCTGGCAACA+TGG | + | chr6_2:22701417-22701436 | None:intergenic | 50.0% | |
| TTGCCAGATGAAATGGGCCT+TGG | - | chr6_2:22701419-22701438 | Msa0912950:CDS | 50.0% | |
| TTGCCAAGGCCCATTTCATC+TGG | + | chr6_2:22701425-22701444 | None:intergenic | 50.0% | |
| !! | CTTAAGCTAGCGGACTTGGA+TGG | - | chr6_2:22701763-22701782 | Msa0912950:intron | 50.0% |
| CATGTGTGTTGCACATGGTC+CGG | + | chr6_2:22701812-22701831 | None:intergenic | 50.0% | |
| TGATTACCTTCCACCTGGGA+TGG | - | chr6_2:22701830-22701849 | Msa0912950:CDS | 50.0% | |
| GATTACCTTCCACCTGGGAT+GGG | - | chr6_2:22701831-22701850 | Msa0912950:CDS | 50.0% | |
| CAACTGAACATACCCATCCC+AGG | + | chr6_2:22701846-22701865 | None:intergenic | 50.0% | |
| CTGGGATGGGTATGTTCAGT+TGG | - | chr6_2:22701844-22701863 | Msa0912950:intron | 50.0% | |
| GTTTCCTGCGGATTTACCTG+AGG | - | chr6_2:22702535-22702554 | Msa0912950:five_prime_UTR | 50.0% | |
| CCTGAGGATTTATGAACCGC+AGG | + | chr6_2:22702755-22702774 | None:intergenic | 50.0% | |
| CCTGCGGTTCATAAATCCTC+AGG | - | chr6_2:22702752-22702771 | Msa0912950:five_prime_UTR | 50.0% | |
| TCGTGGGTAATTGCTTCCTG+AGG | + | chr6_2:22702771-22702790 | None:intergenic | 50.0% | |
| CAGGAAGCAATTACCCACGA+AGG | - | chr6_2:22702771-22702790 | Msa0912950:five_prime_UTR | 50.0% | |
| GTTCCCAGGTAATACCTTCG+TGG | + | chr6_2:22702788-22702807 | None:intergenic | 50.0% | |
| TACCTGGGAACCTGAATCCT+TGG | - | chr6_2:22702797-22702816 | Msa0912950:five_prime_UTR | 50.0% | |
| ! | GCGGATTTTGCCAAGGATTC+AGG | + | chr6_2:22702810-22702829 | None:intergenic | 50.0% |
| GAATCCTTGGCAAAATCCGC+AGG | - | chr6_2:22702810-22702829 | Msa0912950:five_prime_UTR | 50.0% | |
| ! | GTTTCCTGCGGATTTTGCCA+AGG | + | chr6_2:22702817-22702836 | None:intergenic | 50.0% |
| TGGCAAAATCCGCAGGAAAC+AGG | - | chr6_2:22702817-22702836 | Msa0912950:five_prime_UTR | 50.0% | |
| GGAGAAAGACGAACCAAAGG+AGG | + | chr6_2:22703059-22703078 | None:intergenic | 50.0% | |
| GGAGGAGAAAGACGAACCAA+AGG | + | chr6_2:22703062-22703081 | None:intergenic | 50.0% | |
| GGTTCGTCTTTCTCCTCCTT+TGG | - | chr6_2:22703064-22703083 | Msa0912950:intron | 50.0% | |
| GATGCGGTGAAGCATGCTGA+TGG | - | chr6_2:22700367-22700386 | Msa0912950:CDS | 55.0% | |
| TGCGGTGAAGCATGCTGATG+GGG | - | chr6_2:22700369-22700388 | Msa0912950:CDS | 55.0% | |
| GGGCCTTGGCAAAACAGTTC+AGG | - | chr6_2:22701433-22701452 | Msa0912950:CDS | 55.0% | |
| ACATACCCATCCCAGGTGGA+AGG | + | chr6_2:22701839-22701858 | None:intergenic | 55.0% | |
| CTGAACATACCCATCCCAGG+TGG | + | chr6_2:22701843-22701862 | None:intergenic | 55.0% | |
| !! | CCGCAGGGAAGTTTTGGTCA+GGG | + | chr6_2:22702690-22702709 | None:intergenic | 55.0% |
| CCCTGACCAAAACTTCCCTG+CGG | - | chr6_2:22702687-22702706 | Msa0912950:intron | 55.0% | |
| !! | TCCGCAGGGAAGTTTTGGTC+AGG | + | chr6_2:22702691-22702710 | None:intergenic | 55.0% |
| ! | TGCCAAGGATTCAGGTTCCC+AGG | + | chr6_2:22702802-22702821 | None:intergenic | 55.0% |
| CGCAGGAAACCTGTTTCCTG+CGG | + | chr6_2:22702829-22702848 | None:intergenic | 55.0% | |
| CGCAGGAAACAGGTTTCCTG+CGG | - | chr6_2:22702827-22702846 | Msa0912950:five_prime_UTR | 55.0% | |
| TCTTTCTCCTCCTTCGGCTC+TGG | - | chr6_2:22703091-22703110 | Msa0912950:intron | 55.0% | |
| TGGAAAACCAGAGCCGAAGG+AGG | + | chr6_2:22703101-22703120 | None:intergenic | 55.0% | |
| AAGCATGCTGATGGGGCTGC+TGG | - | chr6_2:22700376-22700395 | Msa0912950:CDS | 60.0% | |
| GGGCTTCTGAACGTTGGCGA+CGG | - | chr6_2:22700853-22700872 | Msa0912950:intron | 60.0% | |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr6_2:22700382-22700401 | Msa0912950:CDS | 65.0% | |
| ! | CGTTGGCGACGGACTCACTG+TGG | - | chr6_2:22700864-22700883 | Msa0912950:intron | 65.0% |
| ! | TGGCGACGGACTCACTGTGG+TGG | - | chr6_2:22700867-22700886 | Msa0912950:intron | 65.0% |
| ! | GGCGACGGACTCACTGTGGT+GGG | - | chr6_2:22700868-22700887 | Msa0912950:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 22700345 | 22703272 | 22700345 | ID=Msa0912950;Name=Msa0912950 |
| chr6_2 | mRNA | 22700345 | 22703272 | 22700345 | ID=Msa0912950-mRNA-1;Parent=Msa0912950;Name=Msa0912950-mRNA-1;_AED=0.17;_eAED=0.17;_QI=453|0.7|0.63|0.81|0.4|0.36|11|0|223 |
| chr6_2 | exon | 22700345 | 22700434 | 22700345 | ID=Msa0912950-mRNA-1:exon:4512;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22700505 | 22700651 | 22700505 | ID=Msa0912950-mRNA-1:exon:4511;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22701345 | 22701466 | 22701345 | ID=Msa0912950-mRNA-1:exon:4510;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22701551 | 22701641 | 22701551 | ID=Msa0912950-mRNA-1:exon:4509;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22701765 | 22701860 | 22701765 | ID=Msa0912950-mRNA-1:exon:4508;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22701957 | 22702038 | 22701957 | ID=Msa0912950-mRNA-1:exon:4507;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22702163 | 22702203 | 22702163 | ID=Msa0912950-mRNA-1:exon:4506;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22702285 | 22702428 | 22702285 | ID=Msa0912950-mRNA-1:exon:4505;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22702526 | 22702581 | 22702526 | ID=Msa0912950-mRNA-1:exon:4504;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22702712 | 22702914 | 22702712 | ID=Msa0912950-mRNA-1:exon:4503;Parent=Msa0912950-mRNA-1 |
| chr6_2 | exon | 22703220 | 22703272 | 22703220 | ID=Msa0912950-mRNA-1:exon:4502;Parent=Msa0912950-mRNA-1 |
| chr6_2 | five_prime_UTR | 22703220 | 22703272 | 22703220 | ID=Msa0912950-mRNA-1:five_prime_utr;Parent=Msa0912950-mRNA-1 |
| chr6_2 | five_prime_UTR | 22702712 | 22702914 | 22702712 | ID=Msa0912950-mRNA-1:five_prime_utr;Parent=Msa0912950-mRNA-1 |
| chr6_2 | five_prime_UTR | 22702526 | 22702581 | 22702526 | ID=Msa0912950-mRNA-1:five_prime_utr;Parent=Msa0912950-mRNA-1 |
| chr6_2 | five_prime_UTR | 22702288 | 22702428 | 22702288 | ID=Msa0912950-mRNA-1:five_prime_utr;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22702285 | 22702287 | 22702285 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22702163 | 22702203 | 22702163 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22701957 | 22702038 | 22701957 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22701765 | 22701860 | 22701765 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22701551 | 22701641 | 22701551 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22701345 | 22701466 | 22701345 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22700505 | 22700651 | 22700505 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| chr6_2 | CDS | 22700345 | 22700434 | 22700345 | ID=Msa0912950-mRNA-1:cds;Parent=Msa0912950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
