Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913350 | XP_013452015.1 | 70.336 | 327 | 68 | 3 | 1 | 298 | 1 | 327 | 2.44e-159 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913350 | sp|Q94BZ5|HSFA5_ARATH | 53.755 | 253 | 107 | 3 | 1 | 243 | 1 | 253 | 8.15e-85 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0913350 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913350 | MtrunA17_Chr6g0467041 | 70.336 | 327 | 68 | 3 | 1 | 298 | 1 | 327 | 2.24e-163 | 457 |
| Msa0913350 | MtrunA17_Chr8g0378061 | 76.000 | 275 | 23 | 2 | 23 | 254 | 23 | 297 | 5.43e-145 | 416 |
| Msa0913350 | MtrunA17_Chr8g0378061 | 80.952 | 42 | 8 | 0 | 259 | 300 | 416 | 457 | 3.27e-15 | 75.9 |
| Msa0913350 | MtrunA17_Chr2g0330821 | 55.124 | 283 | 96 | 6 | 1 | 255 | 60 | 339 | 1.47e-94 | 283 |
| Msa0913350 | MtrunA17_Chr2g0330841 | 52.966 | 236 | 61 | 4 | 64 | 255 | 29 | 258 | 4.21e-69 | 220 |
| Msa0913350 | MtrunA17_Chr5g0410881 | 49.763 | 211 | 92 | 4 | 22 | 218 | 32 | 242 | 1.06e-62 | 206 |
| Msa0913350 | MtrunA17_Chr8g0379701 | 40.614 | 293 | 150 | 7 | 15 | 294 | 5 | 286 | 2.99e-59 | 194 |
| Msa0913350 | MtrunA17_Chr4g0039891 | 44.019 | 209 | 105 | 3 | 20 | 216 | 10 | 218 | 1.18e-53 | 182 |
| Msa0913350 | MtrunA17_Chr7g0260331 | 45.192 | 208 | 102 | 5 | 19 | 215 | 46 | 252 | 2.61e-49 | 167 |
| Msa0913350 | MtrunA17_Chr1g0204741 | 42.152 | 223 | 112 | 6 | 7 | 215 | 20 | 239 | 3.06e-49 | 166 |
| Msa0913350 | MtrunA17_Chr3g0135831 | 42.647 | 204 | 111 | 3 | 19 | 217 | 43 | 245 | 3.45e-49 | 167 |
| Msa0913350 | MtrunA17_Chr1g0185131 | 39.367 | 221 | 114 | 4 | 22 | 233 | 32 | 241 | 4.09e-45 | 156 |
| Msa0913350 | MtrunA17_Chr3g0134031 | 67.000 | 100 | 33 | 0 | 14 | 113 | 16 | 115 | 7.09e-45 | 156 |
| Msa0913350 | MtrunA17_Chr8g0392001 | 38.776 | 294 | 148 | 11 | 20 | 294 | 20 | 300 | 8.74e-45 | 155 |
| Msa0913350 | MtrunA17_Chr4g0071051 | 43.011 | 186 | 102 | 2 | 19 | 203 | 98 | 280 | 4.93e-44 | 155 |
| Msa0913350 | MtrunA17_Chr5g0402291 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 6.93e-43 | 149 |
| Msa0913350 | MtrunA17_Chr5g0441531 | 67.742 | 93 | 30 | 0 | 21 | 113 | 24 | 116 | 4.78e-42 | 145 |
| Msa0913350 | MtrunA17_Chr6g0485571 | 39.720 | 214 | 102 | 2 | 20 | 219 | 9 | 209 | 4.12e-41 | 145 |
| Msa0913350 | MtrunA17_Chr5g0397881 | 61.905 | 105 | 39 | 1 | 9 | 113 | 12 | 115 | 1.32e-40 | 144 |
| Msa0913350 | MtrunA17_Chr2g0284481 | 57.407 | 108 | 46 | 0 | 12 | 119 | 5 | 112 | 2.46e-40 | 144 |
| Msa0913350 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 21 | 113 | 32 | 124 | 1.70e-38 | 138 |
| Msa0913350 | MtrunA17_Chr7g0257331 | 51.754 | 114 | 55 | 0 | 1 | 114 | 1 | 114 | 2.08e-38 | 135 |
| Msa0913350 | MtrunA17_Chr1g0203601 | 61.702 | 94 | 36 | 0 | 22 | 115 | 18 | 111 | 1.00e-37 | 135 |
| Msa0913350 | MtrunA17_Chr4g0047421 | 56.701 | 97 | 38 | 1 | 21 | 113 | 32 | 128 | 3.38e-34 | 124 |
| Msa0913350 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 21 | 113 | 8 | 100 | 9.93e-33 | 121 |
| Msa0913350 | MtrunA17_Chr1g0179321 | 64.516 | 62 | 22 | 0 | 20 | 81 | 47 | 108 | 7.38e-25 | 96.3 |
| Msa0913350 | MtrunA17_Chr4g0023771 | 65.517 | 58 | 20 | 0 | 22 | 79 | 15 | 72 | 4.89e-20 | 83.6 |
| Msa0913350 | MtrunA17_Chr1g0179311 | 27.979 | 193 | 116 | 6 | 61 | 243 | 1 | 180 | 1.21e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913350 | AT4G13980.1 | 53.755 | 253 | 107 | 3 | 1 | 243 | 1 | 253 | 8.29e-86 | 265 |
| Msa0913350 | AT4G17750.1 | 47.685 | 216 | 92 | 4 | 22 | 216 | 52 | 267 | 2.52e-58 | 194 |
| Msa0913350 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 1.59e-57 | 192 |
| Msa0913350 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 1.59e-57 | 192 |
| Msa0913350 | AT3G02990.1 | 42.918 | 233 | 120 | 4 | 8 | 228 | 9 | 240 | 6.76e-57 | 190 |
| Msa0913350 | AT1G32330.1 | 48.131 | 214 | 92 | 5 | 22 | 216 | 37 | 250 | 3.86e-56 | 189 |
| Msa0913350 | AT1G32330.2 | 48.131 | 214 | 92 | 5 | 22 | 216 | 37 | 250 | 4.43e-56 | 188 |
| Msa0913350 | AT5G45710.3 | 38.141 | 312 | 155 | 10 | 14 | 296 | 5 | 307 | 6.72e-53 | 176 |
| Msa0913350 | AT5G45710.1 | 38.141 | 312 | 155 | 10 | 14 | 296 | 5 | 307 | 6.72e-53 | 176 |
| Msa0913350 | AT4G18880.1 | 47.196 | 214 | 97 | 4 | 16 | 220 | 9 | 215 | 1.81e-50 | 172 |
| Msa0913350 | AT2G26150.1 | 41.892 | 222 | 121 | 4 | 19 | 232 | 41 | 262 | 1.65e-49 | 167 |
| Msa0913350 | AT2G26150.4 | 41.892 | 222 | 121 | 4 | 19 | 232 | 41 | 262 | 1.65e-49 | 167 |
| Msa0913350 | AT3G22830.1 | 39.815 | 216 | 117 | 3 | 19 | 221 | 58 | 273 | 1.57e-46 | 161 |
| Msa0913350 | AT5G03720.2 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 1.27e-45 | 159 |
| Msa0913350 | AT5G03720.1 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 1.27e-45 | 159 |
| Msa0913350 | AT3G51910.1 | 40.284 | 211 | 109 | 5 | 22 | 226 | 29 | 228 | 2.32e-45 | 155 |
| Msa0913350 | AT1G46264.1 | 61.607 | 112 | 33 | 1 | 21 | 122 | 33 | 144 | 3.10e-44 | 154 |
| Msa0913350 | AT1G67970.1 | 45.833 | 192 | 91 | 5 | 20 | 201 | 17 | 205 | 3.62e-44 | 154 |
| Msa0913350 | AT3G24520.1 | 45.087 | 173 | 75 | 3 | 20 | 191 | 15 | 168 | 4.90e-43 | 150 |
| Msa0913350 | AT5G43840.1 | 41.176 | 187 | 98 | 3 | 21 | 205 | 18 | 194 | 1.93e-41 | 145 |
| Msa0913350 | AT5G54070.1 | 42.623 | 183 | 99 | 2 | 20 | 201 | 69 | 246 | 5.08e-40 | 142 |
| Msa0913350 | AT4G11660.1 | 62.000 | 100 | 38 | 0 | 14 | 113 | 51 | 150 | 8.39e-39 | 140 |
| Msa0913350 | AT3G63350.1 | 37.912 | 182 | 106 | 2 | 19 | 196 | 25 | 203 | 2.59e-38 | 137 |
| Msa0913350 | AT5G62020.1 | 51.261 | 119 | 57 | 1 | 1 | 118 | 1 | 119 | 6.64e-38 | 136 |
| Msa0913350 | AT2G41690.1 | 53.043 | 115 | 54 | 0 | 22 | 136 | 40 | 154 | 1.11e-37 | 134 |
| Msa0913350 | AT4G36990.1 | 60.000 | 95 | 38 | 0 | 21 | 115 | 13 | 107 | 1.27e-37 | 135 |
| Msa0913350 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 22 | 109 | 146 | 233 | 5.49e-23 | 96.7 |
| Msa0913350 | AT4G18870.1 | 46.875 | 96 | 50 | 1 | 14 | 109 | 5 | 99 | 9.99e-23 | 95.9 |
| Msa0913350 | AT1G77570.1 | 43.478 | 92 | 48 | 3 | 19 | 106 | 22 | 113 | 3.60e-17 | 77.4 |
| Msa0913350 | AT2G26150.3 | 31.527 | 203 | 124 | 6 | 40 | 232 | 10 | 207 | 3.89e-15 | 74.7 |
| Msa0913350 | AT2G26150.2 | 31.527 | 203 | 124 | 6 | 40 | 232 | 10 | 207 | 3.89e-15 | 74.7 |
| Msa0913350 | AT4G19630.1 | 35.052 | 97 | 60 | 1 | 19 | 112 | 8 | 104 | 1.94e-13 | 66.6 |
Find 72 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_2:-24043432 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_2:-24043496 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.330894 | 6_2:+24043650 | Msa0913350:CDS |
| CCACAGATGAGATCATTTCT+TGG | 0.343190 | 6_2:+24041800 | Msa0913350:CDS |
| AAGGAGTGAATGATGTGTTT+TGG | 0.360172 | 6_2:+24043871 | Msa0913350:CDS |
| CTTCTTTGAGAAGGCTCTAC+AGG | 0.360916 | 6_2:+24043599 | Msa0913350:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_2:+24041830 | Msa0913350:CDS |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_2:-24041859 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_2:-24043825 | None:intergenic |
| GAAGCCTCCTTTGGATCAAC+GGG | 0.411360 | 6_2:-24043816 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_2:+24043683 | Msa0913350:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 6_2:-24043720 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.419735 | 6_2:-24043488 | None:intergenic |
| TTGCTGTGTTTGAAATATGT+TGG | 0.421946 | 6_2:-24041883 | None:intergenic |
| TGCTGTGTTTGAAATATGTT+GGG | 0.444516 | 6_2:-24041882 | None:intergenic |
| TATCAAGATAATTATAGCTT+AGG | 0.451761 | 6_2:-24043503 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_2:+24043670 | Msa0913350:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.465666 | 6_2:-24043848 | None:intergenic |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_2:+24043395 | Msa0913350:CDS |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.473073 | 6_2:+24043719 | Msa0913350:CDS |
| GAAAGCAGATCCTGATCGTT+GGG | 0.475772 | 6_2:+24043302 | Msa0913350:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_2:-24043312 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.480417 | 6_2:-24043487 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_2:-24043661 | None:intergenic |
| GTTGATCCAAAGGAGGCTTC+AGG | 0.485386 | 6_2:+24043819 | Msa0913350:CDS |
| TTTGCAAAACTTCTTTGAGA+AGG | 0.487416 | 6_2:+24043590 | Msa0913350:CDS |
| CTTTCTGAAGGAGAACTGAC+AGG | 0.491976 | 6_2:+24043774 | Msa0913350:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.494840 | 6_2:+24041735 | Msa0913350:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_2:+24043428 | Msa0913350:CDS |
| TGATACAGAAAAGCTTCAGC+TGG | 0.497298 | 6_2:+24043521 | Msa0913350:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_2:-24041911 | None:intergenic |
| TTCTCTCAGAATCTTTCTGA+AGG | 0.510971 | 6_2:+24043762 | Msa0913350:CDS |
| CATACCTTCTCTGCTTCCGT+CGG | 0.511417 | 6_2:-24041734 | None:intergenic |
| TCTGCTTCCGTCGGGAGCAG+TGG | 0.511561 | 6_2:-24041725 | None:intergenic |
| TTCCCGCAAAATCGAATCCA+TGG | 0.512391 | 6_2:+24043644 | Msa0913350:CDS |
| TCAGCGGCAATTGGATGGCA+TGG | 0.513464 | 6_2:+24043551 | Msa0913350:CDS |
| TCATATGTCTTCTGAAGAAA+CGG | 0.516273 | 6_2:-24041760 | None:intergenic |
| ATACCTTCTCTGCTTCCGTC+GGG | 0.518390 | 6_2:-24041733 | None:intergenic |
| AACTGACCCCGTTGATCCAA+AGG | 0.528185 | 6_2:+24043809 | Msa0913350:CDS |
| GTCGAAGCAGCTGCTCGGCA+AGG | 0.540320 | 6_2:+24043852 | Msa0913350:CDS |
| GAGAGAAAACATTGCTAGGA+AGG | 0.540423 | 6_2:-24043746 | None:intergenic |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6_2:-24043902 | None:intergenic |
| TTCTACTGTAGATCCAGAAA+GGG | 0.545124 | 6_2:+24043419 | Msa0913350:CDS |
| GGAAAGCAGATCCTGATCGT+TGG | 0.545857 | 6_2:+24043301 | Msa0913350:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.548536 | 6_2:+24043847 | Msa0913350:CDS |
| TGAAGCCTCCTTTGGATCAA+CGG | 0.548927 | 6_2:-24043817 | None:intergenic |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_2:-24043395 | None:intergenic |
| AAGGTCGACCAAGCTACCTT+CGG | 0.554405 | 6_2:-24043727 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_2:+24043396 | Msa0913350:CDS |
| GTTCTACTGTAGATCCAGAA+AGG | 0.564434 | 6_2:+24043418 | Msa0913350:CDS |
| AGAAATGATCTCATCTGTGG+TGG | 0.567159 | 6_2:-24041797 | None:intergenic |
| TTCTGAGAGAAAACATTGCT+AGG | 0.570976 | 6_2:-24043750 | None:intergenic |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_2:-24043380 | None:intergenic |
| GCTCCCGACGGAAGCAGAGA+AGG | 0.574540 | 6_2:+24041730 | Msa0913350:CDS |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_2:+24043711 | Msa0913350:CDS |
| TCTTCATTGTCTGAACAGCA+TGG | 0.597736 | 6_2:-24043915 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_2:-24041921 | None:intergenic |
| AATTGGATGGCATGGAGAAG+AGG | 0.602743 | 6_2:+24043559 | Msa0913350:CDS |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_2:-24043390 | None:intergenic |
| GAAATGATCTCATCTGTGGT+GGG | 0.624254 | 6_2:-24041796 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_2:-24041856 | None:intergenic |
| TCATCAGCCACTGCTCCCGA+CGG | 0.635362 | 6_2:+24041718 | Msa0913350:CDS |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_2:+24043917 | Msa0913350:CDS |
| TTTCTGAAGGAGAACTGACA+GGG | 0.656485 | 6_2:+24043775 | Msa0913350:CDS |
| CCAAGAAATGATCTCATCTG+TGG | 0.658293 | 6_2:-24041800 | None:intergenic |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_2:-24041855 | None:intergenic |
| TCTTCAGAAGACATATGACA+TGG | 0.665030 | 6_2:+24041765 | Msa0913350:CDS |
| TCTGGATCTACAGTAGAACC+CGG | 0.676402 | 6_2:-24043414 | None:intergenic |
| TGACCCCGTTGATCCAAAGG+AGG | 0.688995 | 6_2:+24043812 | Msa0913350:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6_2:-24041709 | None:intergenic |
| GGATCTACAGTAGAACCCGG+AGG | 0.764137 | 6_2:-24043411 | None:intergenic |
| AAGCCTCCTTTGGATCAACG+GGG | 0.785647 | 6_2:-24043815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_2:24043143-24043162 | Msa0913350:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_2:24043334-24043353 | None:intergenic | 10.0% |
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_2:24043143-24043162 | Msa0913350:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_2:24043334-24043353 | None:intergenic | 10.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_2:24042606-24042625 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTAATTTGTTA+TGG | + | chr6_2:24043246-24043265 | Msa0913350:intron | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_2:24042606-24042625 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTAATTTGTTA+TGG | + | chr6_2:24043246-24043265 | Msa0913350:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_2:24042036-24042055 | Msa0913350:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_2:24042142-24042161 | Msa0913350:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_2:24042182-24042201 | Msa0913350:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_2:24042336-24042355 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_2:24042348-24042367 | Msa0913350:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_2:24042747-24042766 | Msa0913350:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_2:24042748-24042767 | Msa0913350:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_2:24042835-24042854 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_2:24042855-24042874 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_2:24042854-24042873 | Msa0913350:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_2:24042902-24042921 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_2:24042903-24042922 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_2:24042941-24042960 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_2:24042942-24042961 | None:intergenic | 20.0% |
| !! | GTATTCTTGTAAAGATTTAA+TGG | + | chr6_2:24043165-24043184 | Msa0913350:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_2:24043272-24043291 | Msa0913350:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_2:24043273-24043292 | Msa0913350:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_2:24043506-24043525 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_2:24043670-24043689 | Msa0913350:CDS | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_2:24042036-24042055 | Msa0913350:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_2:24042142-24042161 | Msa0913350:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_2:24042182-24042201 | Msa0913350:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_2:24042336-24042355 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_2:24042348-24042367 | Msa0913350:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_2:24042747-24042766 | Msa0913350:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_2:24042748-24042767 | Msa0913350:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_2:24042835-24042854 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_2:24042855-24042874 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_2:24042854-24042873 | Msa0913350:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_2:24042902-24042921 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_2:24042903-24042922 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_2:24042941-24042960 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_2:24042942-24042961 | None:intergenic | 20.0% |
| !! | GTATTCTTGTAAAGATTTAA+TGG | + | chr6_2:24043165-24043184 | Msa0913350:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_2:24043272-24043291 | Msa0913350:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_2:24043273-24043292 | Msa0913350:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_2:24043506-24043525 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_2:24043670-24043689 | Msa0913350:CDS | 20.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_2:24042159-24042178 | Msa0913350:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_2:24042245-24042264 | Msa0913350:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_2:24042562-24042581 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_2:24043054-24043073 | Msa0913350:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr6_2:24043118-24043137 | None:intergenic | 25.0% |
| ! | AATTAAGTTTGCAGTTCTTA+TGG | + | chr6_2:24043198-24043217 | Msa0913350:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_2:24043499-24043518 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_2:24043664-24043683 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_2:24042159-24042178 | Msa0913350:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_2:24042245-24042264 | Msa0913350:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_2:24042562-24042581 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_2:24043054-24043073 | Msa0913350:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr6_2:24043118-24043137 | None:intergenic | 25.0% |
| ! | AATTAAGTTTGCAGTTCTTA+TGG | + | chr6_2:24043198-24043217 | Msa0913350:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_2:24043499-24043518 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_2:24043664-24043683 | None:intergenic | 25.0% |
| ! | TCATATGTCTTCTGAAGAAA+CGG | - | chr6_2:24041763-24041782 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_2:24041830-24041849 | Msa0913350:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_2:24041885-24041904 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_2:24041886-24041905 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_2:24041938-24041957 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_2:24042070-24042089 | Msa0913350:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_2:24042416-24042435 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_2:24042417-24042436 | Msa0913350:intron | 30.0% |
| !! | TATGTCTTAATTTTCGGTGT+GGG | + | chr6_2:24042423-24042442 | Msa0913350:intron | 30.0% |
| ! | AAGAATATTTCTACAGCATC+TGG | + | chr6_2:24042499-24042518 | Msa0913350:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_2:24042573-24042592 | Msa0913350:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | - | chr6_2:24042595-24042614 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_2:24042752-24042771 | Msa0913350:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_2:24042753-24042772 | Msa0913350:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_2:24042801-24042820 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_2:24042802-24042821 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_2:24042935-24042954 | None:intergenic | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | + | chr6_2:24043073-24043092 | Msa0913350:intron | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_2:24043280-24043299 | Msa0913350:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_2:24043350-24043369 | Msa0913350:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_2:24043590-24043609 | Msa0913350:CDS | 30.0% |
| ! | TCATATGTCTTCTGAAGAAA+CGG | - | chr6_2:24041763-24041782 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_2:24041830-24041849 | Msa0913350:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_2:24041885-24041904 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_2:24041886-24041905 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_2:24041938-24041957 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_2:24042070-24042089 | Msa0913350:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_2:24042416-24042435 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_2:24042417-24042436 | Msa0913350:intron | 30.0% |
| !! | TATGTCTTAATTTTCGGTGT+GGG | + | chr6_2:24042423-24042442 | Msa0913350:intron | 30.0% |
| ! | AAGAATATTTCTACAGCATC+TGG | + | chr6_2:24042499-24042518 | Msa0913350:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_2:24042573-24042592 | Msa0913350:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | - | chr6_2:24042595-24042614 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_2:24042752-24042771 | Msa0913350:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_2:24042753-24042772 | Msa0913350:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_2:24042801-24042820 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_2:24042802-24042821 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_2:24042935-24042954 | None:intergenic | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | + | chr6_2:24043073-24043092 | Msa0913350:intron | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_2:24043280-24043299 | Msa0913350:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_2:24043350-24043369 | Msa0913350:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_2:24043590-24043609 | Msa0913350:CDS | 30.0% |
| TCTTCAGAAGACATATGACA+TGG | + | chr6_2:24041765-24041784 | Msa0913350:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_2:24041924-24041943 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_2:24042221-24042240 | Msa0913350:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_2:24042354-24042373 | Msa0913350:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_2:24042422-24042441 | Msa0913350:intron | 35.0% |
| TGACGCATTTCATATACTTC+AGG | - | chr6_2:24042635-24042654 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_2:24042770-24042789 | Msa0913350:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_2:24042811-24042830 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_2:24043106-24043125 | None:intergenic | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | + | chr6_2:24043419-24043438 | Msa0913350:CDS | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_2:24043650-24043669 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_2:24043650-24043669 | Msa0913350:CDS | 35.0% | |
| ! | TTCTGAGAGAAAACATTGCT+AGG | - | chr6_2:24043753-24043772 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_2:24043762-24043781 | Msa0913350:CDS | 35.0% | |
| ! | AAGGAGTGAATGATGTGTTT+TGG | + | chr6_2:24043871-24043890 | Msa0913350:CDS | 35.0% |
| ! | AGGAGTGAATGATGTGTTTT+GGG | + | chr6_2:24043872-24043891 | Msa0913350:CDS | 35.0% |
| TCTTCAGAAGACATATGACA+TGG | + | chr6_2:24041765-24041784 | Msa0913350:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_2:24041924-24041943 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_2:24042221-24042240 | Msa0913350:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_2:24042354-24042373 | Msa0913350:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_2:24042422-24042441 | Msa0913350:intron | 35.0% |
| TGACGCATTTCATATACTTC+AGG | - | chr6_2:24042635-24042654 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_2:24042770-24042789 | Msa0913350:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_2:24042811-24042830 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_2:24043106-24043125 | None:intergenic | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | + | chr6_2:24043419-24043438 | Msa0913350:CDS | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_2:24043650-24043669 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_2:24043650-24043669 | Msa0913350:CDS | 35.0% | |
| ! | TTCTGAGAGAAAACATTGCT+AGG | - | chr6_2:24043753-24043772 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_2:24043762-24043781 | Msa0913350:CDS | 35.0% | |
| ! | AAGGAGTGAATGATGTGTTT+TGG | + | chr6_2:24043871-24043890 | Msa0913350:CDS | 35.0% |
| ! | AGGAGTGAATGATGTGTTTT+GGG | + | chr6_2:24043872-24043891 | Msa0913350:CDS | 35.0% |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_2:24041799-24041818 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_2:24041800-24041819 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_2:24041803-24041822 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_2:24041800-24041819 | Msa0913350:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_2:24042448-24042467 | Msa0913350:intron | 40.0% |
| TTTCTACAGCATCTGGATCT+TGG | + | chr6_2:24042506-24042525 | Msa0913350:intron | 40.0% | |
| CAGACACATCATGACTAACA+TGG | - | chr6_2:24042812-24042831 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_2:24042865-24042884 | Msa0913350:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_2:24042866-24042885 | Msa0913350:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_2:24042920-24042939 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_2:24042962-24042981 | None:intergenic | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | + | chr6_2:24043418-24043437 | Msa0913350:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_2:24043490-24043509 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_2:24043491-24043510 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_2:24043521-24043540 | Msa0913350:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_2:24043535-24043554 | Msa0913350:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_2:24043649-24043668 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_2:24043683-24043702 | Msa0913350:CDS | 40.0% | |
| GAGAGAAAACATTGCTAGGA+AGG | - | chr6_2:24043749-24043768 | None:intergenic | 40.0% | |
| ! | TTTCTGAAGGAGAACTGACA+GGG | + | chr6_2:24043775-24043794 | Msa0913350:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_2:24043905-24043924 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_2:24043918-24043937 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_2:24043917-24043936 | Msa0913350:CDS | 40.0% | |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_2:24041799-24041818 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_2:24041800-24041819 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_2:24041803-24041822 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_2:24041800-24041819 | Msa0913350:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_2:24042448-24042467 | Msa0913350:intron | 40.0% |
| TTTCTACAGCATCTGGATCT+TGG | + | chr6_2:24042506-24042525 | Msa0913350:intron | 40.0% | |
| CAGACACATCATGACTAACA+TGG | - | chr6_2:24042812-24042831 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_2:24042865-24042884 | Msa0913350:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_2:24042866-24042885 | Msa0913350:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_2:24042920-24042939 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_2:24042962-24042981 | None:intergenic | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | + | chr6_2:24043418-24043437 | Msa0913350:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_2:24043490-24043509 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_2:24043491-24043510 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_2:24043521-24043540 | Msa0913350:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_2:24043535-24043554 | Msa0913350:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_2:24043649-24043668 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_2:24043683-24043702 | Msa0913350:CDS | 40.0% | |
| GAGAGAAAACATTGCTAGGA+AGG | - | chr6_2:24043749-24043768 | None:intergenic | 40.0% | |
| ! | TTTCTGAAGGAGAACTGACA+GGG | + | chr6_2:24043775-24043794 | Msa0913350:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_2:24043905-24043924 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_2:24043918-24043937 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_2:24043917-24043936 | Msa0913350:CDS | 40.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_2:24041862-24041881 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_2:24042874-24042893 | Msa0913350:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_2:24042884-24042903 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_2:24042921-24042940 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_2:24042977-24042996 | Msa0913350:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_2:24043103-24043122 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_2:24043302-24043321 | Msa0913350:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_2:24043383-24043402 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_2:24043393-24043412 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | - | chr6_2:24043417-24043436 | None:intergenic | 45.0% | |
| ! | GGAAGATTTTCAGCGGCAAT+TGG | + | chr6_2:24043542-24043561 | Msa0913350:CDS | 45.0% |
| ! | GATTTTCAGCGGCAATTGGA+TGG | + | chr6_2:24043546-24043565 | Msa0913350:CDS | 45.0% |
| AATTGGATGGCATGGAGAAG+AGG | + | chr6_2:24043559-24043578 | Msa0913350:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTAC+AGG | + | chr6_2:24043599-24043618 | Msa0913350:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_2:24043644-24043663 | Msa0913350:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_2:24043774-24043793 | Msa0913350:CDS | 45.0% |
| TGAAGCCTCCTTTGGATCAA+CGG | - | chr6_2:24043820-24043839 | None:intergenic | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_2:24041862-24041881 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_2:24042874-24042893 | Msa0913350:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_2:24042884-24042903 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_2:24042921-24042940 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_2:24042977-24042996 | Msa0913350:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_2:24043103-24043122 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_2:24043302-24043321 | Msa0913350:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_2:24043383-24043402 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_2:24043393-24043412 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | - | chr6_2:24043417-24043436 | None:intergenic | 45.0% | |
| ! | GGAAGATTTTCAGCGGCAAT+TGG | + | chr6_2:24043542-24043561 | Msa0913350:CDS | 45.0% |
| ! | GATTTTCAGCGGCAATTGGA+TGG | + | chr6_2:24043546-24043565 | Msa0913350:CDS | 45.0% |
| AATTGGATGGCATGGAGAAG+AGG | + | chr6_2:24043559-24043578 | Msa0913350:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTAC+AGG | + | chr6_2:24043599-24043618 | Msa0913350:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_2:24043644-24043663 | Msa0913350:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_2:24043774-24043793 | Msa0913350:CDS | 45.0% |
| TGAAGCCTCCTTTGGATCAA+CGG | - | chr6_2:24043820-24043839 | None:intergenic | 45.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_2:24041712-24041731 | None:intergenic | 50.0% |
| ATACCTTCTCTGCTTCCGTC+GGG | - | chr6_2:24041736-24041755 | None:intergenic | 50.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_2:24041737-24041756 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_2:24041858-24041877 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_2:24041859-24041878 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_2:24041914-24041933 | None:intergenic | 50.0% |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_2:24042405-24042424 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_2:24042435-24042454 | Msa0913350:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_2:24042439-24042458 | Msa0913350:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_2:24043099-24043118 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_2:24043100-24043119 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_2:24043301-24043320 | Msa0913350:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_2:24043315-24043334 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_2:24043395-24043414 | Msa0913350:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_2:24043396-24043415 | Msa0913350:CDS | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_2:24043428-24043447 | Msa0913350:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_2:24043435-24043454 | None:intergenic | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_2:24043730-24043749 | None:intergenic | 50.0% | |
| AACTGACCCCGTTGATCCAA+AGG | + | chr6_2:24043809-24043828 | Msa0913350:CDS | 50.0% | |
| AAGCCTCCTTTGGATCAACG+GGG | - | chr6_2:24043818-24043837 | None:intergenic | 50.0% | |
| GAAGCCTCCTTTGGATCAAC+GGG | - | chr6_2:24043819-24043838 | None:intergenic | 50.0% | |
| GTTGATCCAAAGGAGGCTTC+AGG | + | chr6_2:24043819-24043838 | Msa0913350:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_2:24043828-24043847 | None:intergenic | 50.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_2:24041712-24041731 | None:intergenic | 50.0% |
| ATACCTTCTCTGCTTCCGTC+GGG | - | chr6_2:24041736-24041755 | None:intergenic | 50.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_2:24041737-24041756 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_2:24041858-24041877 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_2:24041859-24041878 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_2:24041914-24041933 | None:intergenic | 50.0% |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_2:24042405-24042424 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_2:24042435-24042454 | Msa0913350:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_2:24042439-24042458 | Msa0913350:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_2:24043099-24043118 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_2:24043100-24043119 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_2:24043301-24043320 | Msa0913350:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_2:24043315-24043334 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_2:24043395-24043414 | Msa0913350:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_2:24043396-24043415 | Msa0913350:CDS | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_2:24043428-24043447 | Msa0913350:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_2:24043435-24043454 | None:intergenic | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_2:24043730-24043749 | None:intergenic | 50.0% | |
| AACTGACCCCGTTGATCCAA+AGG | + | chr6_2:24043809-24043828 | Msa0913350:CDS | 50.0% | |
| AAGCCTCCTTTGGATCAACG+GGG | - | chr6_2:24043818-24043837 | None:intergenic | 50.0% | |
| GAAGCCTCCTTTGGATCAAC+GGG | - | chr6_2:24043819-24043838 | None:intergenic | 50.0% | |
| GTTGATCCAAAGGAGGCTTC+AGG | + | chr6_2:24043819-24043838 | Msa0913350:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_2:24043828-24043847 | None:intergenic | 50.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_2:24041735-24041754 | Msa0913350:CDS | 55.0% | |
| GATTAGGTGCGTCCTGGTGT+CGG | - | chr6_2:24042383-24042402 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_2:24042399-24042418 | None:intergenic | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_2:24042438-24042457 | Msa0913350:intron | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_2:24043398-24043417 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | - | chr6_2:24043414-24043433 | None:intergenic | 55.0% | |
| TCAGCGGCAATTGGATGGCA+TGG | + | chr6_2:24043551-24043570 | Msa0913350:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_2:24043723-24043742 | None:intergenic | 55.0% | |
| TGACCCCGTTGATCCAAAGG+AGG | + | chr6_2:24043812-24043831 | Msa0913350:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_2:24043847-24043866 | Msa0913350:CDS | 55.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_2:24041735-24041754 | Msa0913350:CDS | 55.0% | |
| GATTAGGTGCGTCCTGGTGT+CGG | - | chr6_2:24042383-24042402 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_2:24042399-24042418 | None:intergenic | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_2:24042438-24042457 | Msa0913350:intron | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_2:24043398-24043417 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | - | chr6_2:24043414-24043433 | None:intergenic | 55.0% | |
| TCAGCGGCAATTGGATGGCA+TGG | + | chr6_2:24043551-24043570 | Msa0913350:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_2:24043723-24043742 | None:intergenic | 55.0% | |
| TGACCCCGTTGATCCAAAGG+AGG | + | chr6_2:24043812-24043831 | Msa0913350:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_2:24043847-24043866 | Msa0913350:CDS | 55.0% | |
| TCATCAGCCACTGCTCCCGA+CGG | + | chr6_2:24041718-24041737 | Msa0913350:CDS | 60.0% | |
| ACCAGGACGCACCTAATCCG+AGG | + | chr6_2:24042385-24042404 | Msa0913350:intron | 60.0% | |
| ! | TCCTCGGATTAGGTGCGTCC+TGG | - | chr6_2:24042389-24042408 | None:intergenic | 60.0% |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_2:24043711-24043730 | Msa0913350:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_2:24043719-24043738 | Msa0913350:CDS | 60.0% | |
| TCATCAGCCACTGCTCCCGA+CGG | + | chr6_2:24041718-24041737 | Msa0913350:CDS | 60.0% | |
| ACCAGGACGCACCTAATCCG+AGG | + | chr6_2:24042385-24042404 | Msa0913350:intron | 60.0% | |
| ! | TCCTCGGATTAGGTGCGTCC+TGG | - | chr6_2:24042389-24042408 | None:intergenic | 60.0% |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_2:24043711-24043730 | Msa0913350:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_2:24043719-24043738 | Msa0913350:CDS | 60.0% | |
| TCTGCTTCCGTCGGGAGCAG+TGG | - | chr6_2:24041728-24041747 | None:intergenic | 65.0% | |
| GCTCCCGACGGAAGCAGAGA+AGG | + | chr6_2:24041730-24041749 | Msa0913350:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_2:24043851-24043870 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+AGG | + | chr6_2:24043852-24043871 | Msa0913350:CDS | 65.0% | |
| TCTGCTTCCGTCGGGAGCAG+TGG | - | chr6_2:24041728-24041747 | None:intergenic | 65.0% | |
| GCTCCCGACGGAAGCAGAGA+AGG | + | chr6_2:24041730-24041749 | Msa0913350:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_2:24043851-24043870 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+AGG | + | chr6_2:24043852-24043871 | Msa0913350:CDS | 65.0% | |
| ! | CGGTGTCGGACACCGACACC+AGG | + | chr6_2:24042368-24042387 | Msa0913350:intron | 70.0% |
| ! | CGGTGTCGGACACCGACACC+AGG | + | chr6_2:24042368-24042387 | Msa0913350:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 24041697 | 24043953 | 24041697 | ID=Msa0913350;Name=Msa0913350 |
| chr6_2 | mRNA | 24041697 | 24043953 | 24041697 | ID=Msa0913350-mRNA-1;Parent=Msa0913350;Name=Msa0913350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|300 |
| chr6_2 | exon | 24041697 | 24041939 | 24041697 | ID=Msa0913350-mRNA-1:exon:4684;Parent=Msa0913350-mRNA-1 |
| chr6_2 | exon | 24043294 | 24043953 | 24043294 | ID=Msa0913350-mRNA-1:exon:4685;Parent=Msa0913350-mRNA-1 |
| chr6_2 | CDS | 24041697 | 24041939 | 24041697 | ID=Msa0913350-mRNA-1:cds;Parent=Msa0913350-mRNA-1 |
| chr6_2 | CDS | 24043294 | 24043953 | 24043294 | ID=Msa0913350-mRNA-1:cds;Parent=Msa0913350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
