Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913440 | XP_004516775.1 | 38.078 | 281 | 125 | 6 | 1 | 275 | 14 | 251 | 9.87e-45 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913440 | sp|Q5XEM9|ALFL5_ARATH | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 6.58e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0913440 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913440 | MtrunA17_Chr6g0457221 | 55.714 | 140 | 58 | 2 | 26 | 165 | 44 | 179 | 2.80e-40 | 150 |
| Msa0913440 | MtrunA17_Chr6g0457161 | 52.258 | 155 | 67 | 3 | 7 | 158 | 31 | 181 | 5.73e-39 | 146 |
| Msa0913440 | MtrunA17_Chr8g0343441 | 79.012 | 81 | 17 | 0 | 267 | 347 | 176 | 256 | 5.91e-31 | 117 |
| Msa0913440 | MtrunA17_Chr2g0329821 | 75.862 | 58 | 14 | 0 | 289 | 346 | 193 | 250 | 3.45e-26 | 104 |
| Msa0913440 | MtrunA17_Chr1g0150821 | 76.364 | 55 | 12 | 1 | 293 | 347 | 210 | 263 | 8.02e-24 | 99.0 |
| Msa0913440 | MtrunA17_Chr2g0300241 | 68.333 | 60 | 16 | 2 | 290 | 347 | 195 | 253 | 9.11e-22 | 92.8 |
| Msa0913440 | MtrunA17_Chr4g0076771 | 69.231 | 52 | 16 | 0 | 292 | 343 | 201 | 252 | 3.73e-21 | 91.3 |
| Msa0913440 | MtrunA17_Chr4g0006381 | 69.091 | 55 | 16 | 1 | 293 | 347 | 189 | 242 | 2.48e-20 | 88.6 |
| Msa0913440 | MtrunA17_Chr7g0242511 | 65.455 | 55 | 18 | 1 | 293 | 347 | 189 | 242 | 5.29e-19 | 85.1 |
| Msa0913440 | MtrunA17_Chr5g0402951 | 34.483 | 116 | 67 | 2 | 23 | 135 | 160 | 269 | 6.28e-14 | 72.4 |
| Msa0913440 | MtrunA17_Chr5g0402961 | 39.175 | 97 | 56 | 1 | 23 | 119 | 162 | 255 | 3.64e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913440 | AT5G38690.2 | 30.657 | 274 | 159 | 6 | 26 | 275 | 30 | 296 | 1.49e-28 | 116 |
| Msa0913440 | AT5G38690.1 | 30.657 | 274 | 159 | 6 | 26 | 275 | 30 | 296 | 1.49e-28 | 116 |
| Msa0913440 | AT1G67780.2 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.74e-28 | 115 |
| Msa0913440 | AT1G67780.1 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.74e-28 | 115 |
| Msa0913440 | AT1G67270.1 | 48.246 | 114 | 56 | 1 | 9 | 119 | 5 | 118 | 9.30e-26 | 108 |
| Msa0913440 | AT5G20510.2 | 71.186 | 59 | 16 | 1 | 289 | 347 | 162 | 219 | 3.87e-24 | 99.0 |
| Msa0913440 | AT5G20510.1 | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 6.69e-24 | 99.4 |
| Msa0913440 | AT3G42790.1 | 74.138 | 58 | 14 | 1 | 289 | 346 | 193 | 249 | 1.41e-23 | 98.2 |
| Msa0913440 | AT2G02470.1 | 74.545 | 55 | 13 | 1 | 293 | 347 | 203 | 256 | 3.68e-23 | 97.1 |
| Msa0913440 | AT2G02470.2 | 74.545 | 55 | 13 | 1 | 293 | 347 | 194 | 247 | 4.21e-23 | 96.7 |
| Msa0913440 | AT5G26210.1 | 75.000 | 56 | 13 | 1 | 291 | 346 | 200 | 254 | 1.42e-22 | 95.5 |
| Msa0913440 | AT1G14510.1 | 68.519 | 54 | 17 | 0 | 293 | 346 | 198 | 251 | 1.77e-21 | 92.4 |
| Msa0913440 | AT5G05610.2 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 6.06e-19 | 85.1 |
| Msa0913440 | AT5G05610.1 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 6.06e-19 | 85.1 |
| Msa0913440 | AT3G11200.1 | 62.745 | 51 | 19 | 0 | 289 | 339 | 189 | 239 | 1.34e-17 | 81.6 |
| Msa0913440 | AT3G11200.2 | 62.745 | 51 | 19 | 0 | 289 | 339 | 176 | 226 | 1.88e-17 | 80.9 |
| Msa0913440 | AT2G23530.1 | 39.252 | 107 | 54 | 3 | 18 | 119 | 153 | 253 | 1.31e-13 | 72.0 |
| Msa0913440 | AT4G37110.3 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 5.22e-13 | 69.3 |
| Msa0913440 | AT4G37110.4 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 5.22e-13 | 69.3 |
| Msa0913440 | AT4G37110.2 | 33.846 | 130 | 82 | 3 | 23 | 152 | 165 | 290 | 1.41e-12 | 68.6 |
| Msa0913440 | AT4G37110.1 | 33.846 | 130 | 82 | 3 | 23 | 152 | 178 | 303 | 1.76e-12 | 68.6 |
Find 96 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6_2:-24237658 | Msa0913440:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6_2:+24237960 | None:intergenic |
| TTTATGATGGAGTTTGATTT+AGG | 0.207910 | 6_2:+24238834 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6_2:-24237638 | Msa0913440:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6_2:+24237306 | None:intergenic |
| TGAATTGGTGTTGGATTTAG+AGG | 0.320517 | 6_2:+24238750 | None:intergenic |
| TTATGATGGAGTTTGATTTA+GGG | 0.355183 | 6_2:+24238835 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6_2:-24237973 | Msa0913440:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6_2:-24237623 | Msa0913440:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6_2:+24237588 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6_2:+24237216 | None:intergenic |
| TACTTGATAATAATGCTATA+AGG | 0.390742 | 6_2:-24237562 | Msa0913440:CDS |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6_2:-24237717 | Msa0913440:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6_2:+24238257 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6_2:+24238236 | None:intergenic |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6_2:-24237958 | Msa0913440:CDS |
| TCCTCAATTAGTTCGCTCTC+TGG | 0.419659 | 6_2:+24237539 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6_2:-24237718 | Msa0913440:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6_2:-24237957 | Msa0913440:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6_2:-24237984 | Msa0913440:CDS |
| GGTTTATGGAATTTGTTTGA+TGG | 0.426060 | 6_2:+24238806 | None:intergenic |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6_2:-24238065 | Msa0913440:CDS |
| CATGTTGTTGCAAGTGGTGG+TGG | 0.430941 | 6_2:+24238719 | None:intergenic |
| TGGGGTGAGCAGCGATGGAA+GGG | 0.432655 | 6_2:+24238783 | None:intergenic |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6_2:-24237657 | Msa0913440:CDS |
| GGAATATATTGAATTGGTGT+TGG | 0.437660 | 6_2:+24238741 | None:intergenic |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6_2:+24237147 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6_2:-24238095 | Msa0913440:CDS |
| CTGGGGTGAGCAGCGATGGA+AGG | 0.443550 | 6_2:+24238782 | None:intergenic |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6_2:-24237240 | Msa0913440:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6_2:+24237111 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6_2:-24237224 | Msa0913440:CDS |
| CCCAACTCATTGTGTGGCAA+TGG | 0.466607 | 6_2:-24237732 | Msa0913440:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6_2:-24238030 | Msa0913440:CDS |
| GTGGTGGGAATATATTGAAT+TGG | 0.479017 | 6_2:+24238735 | None:intergenic |
| TATGATGGAGTTTGATTTAG+GGG | 0.479970 | 6_2:+24238836 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.482752 | 6_2:-24238493 | Msa0913440:intron |
| CCAACTCATTGTGTGGCAAT+GGG | 0.483073 | 6_2:-24237731 | Msa0913440:CDS |
| GTTTATGGAATTTGTTTGAT+GGG | 0.485816 | 6_2:+24238807 | None:intergenic |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6_2:-24237983 | Msa0913440:CDS |
| GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6_2:-24237518 | Msa0913440:CDS |
| ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6_2:-24237495 | Msa0913440:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6_2:-24237713 | Msa0913440:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6_2:-24237161 | Msa0913440:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6_2:+24237589 | None:intergenic |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6_2:-24237603 | Msa0913440:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6_2:-24238440 | Msa0913440:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6_2:-24238094 | Msa0913440:CDS |
| GCCAGAGAGCGAACTAATTG+AGG | 0.518422 | 6_2:-24237540 | Msa0913440:CDS |
| ATGATGGAGTTTGATTTAGG+GGG | 0.519150 | 6_2:+24238837 | None:intergenic |
| GGGGTGAGCAGCGATGGAAG+GGG | 0.519456 | 6_2:+24238784 | None:intergenic |
| CCCATTGCCACACAATGAGT+TGG | 0.523611 | 6_2:+24237731 | None:intergenic |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6_2:+24238665 | None:intergenic |
| GACAAAATTTGCTAGGAACA+CGG | 0.526762 | 6_2:+24238637 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6_2:+24238235 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6_2:+24237732 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.532955 | 6_2:-24238669 | Msa0913440:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6_2:-24237310 | Msa0913440:CDS |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6_2:-24237197 | Msa0913440:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6_2:-24237188 | Msa0913440:CDS |
| ACAAAATTTGCTAGGAACAC+GGG | 0.544351 | 6_2:+24238638 | None:intergenic |
| GGGTGAGCAGCGATGGAAGG+GGG | 0.548394 | 6_2:+24238785 | None:intergenic |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6_2:+24238055 | None:intergenic |
| TGAATTTAGATATGGGGAAG+AGG | 0.550948 | 6_2:-24238293 | Msa0913440:intron |
| TTTCATGTTGTTGCAAGTGG+TGG | 0.560875 | 6_2:+24238716 | None:intergenic |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6_2:-24237160 | Msa0913440:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6_2:+24237706 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6_2:+24237148 | None:intergenic |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6_2:+24238664 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6_2:+24237172 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6_2:+24237671 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6_2:-24237189 | Msa0913440:CDS |
| ATGTTGTTGCAAGTGGTGGT+GGG | 0.579690 | 6_2:+24238720 | None:intergenic |
| GGATTTCATGTTGTTGCAAG+TGG | 0.580645 | 6_2:+24238713 | None:intergenic |
| GAGGAAGATGAAGATGAAGA+CGG | 0.585144 | 6_2:-24237276 | Msa0913440:CDS |
| GAATTGGTGTTGGATTTAGA+GGG | 0.594166 | 6_2:+24238751 | None:intergenic |
| ACCTGGTGACAAAATTTGCT+AGG | 0.596109 | 6_2:+24238630 | None:intergenic |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6_2:+24237665 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6_2:-24237096 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6_2:+24237628 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6_2:-24238072 | Msa0913440:CDS |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6_2:-24237952 | Msa0913440:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6_2:-24237653 | Msa0913440:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6_2:-24238244 | Msa0913440:CDS |
| ATATTTCCCAACTCATTGTG+TGG | 0.634714 | 6_2:-24237738 | Msa0913440:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6_2:-24237295 | Msa0913440:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6_2:-24238093 | Msa0913440:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.656398 | 6_2:-24238299 | Msa0913440:intron |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6_2:+24238083 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6_2:-24237723 | Msa0913440:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6_2:+24238080 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6_2:+24237217 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6_2:-24237261 | Msa0913440:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6_2:-24237252 | Msa0913440:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6_2:-24237316 | Msa0913440:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6_2:+24237149 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6_2:24237435-24237454 | Msa0913440:CDS | 15.0% |
| !!! | TTAAATTATTTTGAGTACAA+AGG | - | chr6_2:24237578-24237597 | Msa0913440:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6_2:24237766-24237785 | Msa0913440:intron | 15.0% |
| !!! | ATTCAAAAGGTTTACTTTTT+TGG | + | chr6_2:24237683-24237702 | None:intergenic | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6_2:24237686-24237705 | Msa0913440:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6_2:24238293-24238312 | Msa0913440:intron | 20.0% |
| !!! | TACTTGATAATAATGCTATA+AGG | - | chr6_2:24238388-24238407 | Msa0913440:intron | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6_2:24238523-24238542 | Msa0913440:intron | 20.0% |
| !!! | TTTTGAATTTTCTCTTAAGT+AGG | - | chr6_2:24238610-24238629 | Msa0913440:intron | 20.0% |
| !! | TTATGATGGAGTTTGATTTA+GGG | + | chr6_2:24237118-24237137 | None:intergenic | 25.0% |
| !! | TTTATGATGGAGTTTGATTT+AGG | + | chr6_2:24237119-24237138 | None:intergenic | 25.0% |
| !! | GTTTATGGAATTTGTTTGAT+GGG | + | chr6_2:24237146-24237165 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6_2:24237466-24237485 | None:intergenic | 25.0% |
| ! | TTGTGTGTTGAATTTAGATA+TGG | - | chr6_2:24237649-24237668 | Msa0913440:CDS | 25.0% |
| ! | TGTGTGTTGAATTTAGATAT+GGG | - | chr6_2:24237650-24237669 | Msa0913440:CDS | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6_2:24237772-24237791 | Msa0913440:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6_2:24237947-24237966 | Msa0913440:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6_2:24237948-24237967 | Msa0913440:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6_2:24237966-24237985 | Msa0913440:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6_2:24237967-24237986 | Msa0913440:CDS | 25.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6_2:24237993-24238012 | None:intergenic | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6_2:24237992-24238011 | Msa0913440:CDS | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6_2:24237993-24238012 | Msa0913440:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6_2:24238064-24238083 | Msa0913440:CDS | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6_2:24238292-24238311 | Msa0913440:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6_2:24238325-24238344 | None:intergenic | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6_2:24238327-24238346 | Msa0913440:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6_2:24238522-24238541 | Msa0913440:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6_2:24238572-24238591 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6_2:24238570-24238589 | Msa0913440:intron | 25.0% |
| ! | TATGATGGAGTTTGATTTAG+GGG | + | chr6_2:24237117-24237136 | None:intergenic | 30.0% |
| ! | GGTTTATGGAATTTGTTTGA+TGG | + | chr6_2:24237147-24237166 | None:intergenic | 30.0% |
| ! | ATTTAGAGGGATGATTTTCT+GGG | + | chr6_2:24237189-24237208 | None:intergenic | 30.0% |
| GGAATATATTGAATTGGTGT+TGG | + | chr6_2:24237212-24237231 | None:intergenic | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6_2:24237651-24237670 | Msa0913440:CDS | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6_2:24237829-24237848 | Msa0913440:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6_2:24238035-24238054 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6_2:24238036-24238055 | None:intergenic | 30.0% | |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6_2:24238170-24238189 | Msa0913440:intron | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6_2:24238288-24238307 | None:intergenic | 30.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6_2:24238297-24238316 | Msa0913440:intron | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6_2:24238364-24238383 | None:intergenic | 30.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6_2:24238455-24238474 | Msa0913440:CDS | 30.0% | |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6_2:24238459-24238478 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6_2:24238527-24238546 | Msa0913440:intron | 30.0% |
| ATGACATCCTTAATACTTGT+TGG | - | chr6_2:24238562-24238581 | Msa0913440:intron | 30.0% | |
| ! | ATTTTCTCTTAAGTAGGCTT+TGG | - | chr6_2:24238616-24238635 | Msa0913440:intron | 30.0% |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6_2:24238736-24238755 | None:intergenic | 30.0% | |
| ! | ATGATGGAGTTTGATTTAGG+GGG | + | chr6_2:24237116-24237135 | None:intergenic | 35.0% |
| !! | TTTGATGGGTCGTTTTATGA+TGG | + | chr6_2:24237132-24237151 | None:intergenic | 35.0% |
| ! | TTTAGAGGGATGATTTTCTG+GGG | + | chr6_2:24237188-24237207 | None:intergenic | 35.0% |
| ! | GATTTAGAGGGATGATTTTC+TGG | + | chr6_2:24237190-24237209 | None:intergenic | 35.0% |
| !! | GAATTGGTGTTGGATTTAGA+GGG | + | chr6_2:24237202-24237221 | None:intergenic | 35.0% |
| !! | TGAATTGGTGTTGGATTTAG+AGG | + | chr6_2:24237203-24237222 | None:intergenic | 35.0% |
| ! | GTGGTGGGAATATATTGAAT+TGG | + | chr6_2:24237218-24237237 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6_2:24237261-24237280 | None:intergenic | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6_2:24237315-24237334 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6_2:24237316-24237335 | None:intergenic | 35.0% |
| CAAGAAACAAGAAATCAACC+TGG | + | chr6_2:24237340-24237359 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6_2:24237492-24237511 | Msa0913440:CDS | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6_2:24237505-24237524 | None:intergenic | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6_2:24237510-24237529 | Msa0913440:CDS | 35.0% |
| GCAAAAAATGTCTCTTAGAC+AGG | - | chr6_2:24237537-24237556 | Msa0913440:CDS | 35.0% | |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6_2:24237657-24237676 | Msa0913440:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6_2:24237696-24237715 | None:intergenic | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6_2:24237935-24237954 | Msa0913440:intron | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6_2:24237977-24237996 | Msa0913440:CDS | 35.0% | |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6_2:24238173-24238192 | Msa0913440:intron | 35.0% |
| ATATTTCCCAACTCATTGTG+TGG | - | chr6_2:24238212-24238231 | Msa0913440:intron | 35.0% | |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6_2:24238365-24238384 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6_2:24238450-24238469 | None:intergenic | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6_2:24238451-24238470 | None:intergenic | 35.0% |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6_2:24238737-24238756 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6_2:24238750-24238769 | Msa0913440:five_prime_UTR | 35.0% |
| TGATATTCACACATTTCCCA+TGG | + | chr6_2:24238781-24238800 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6_2:24238842-24238861 | None:intergenic | 35.0% |
| TTTCATGTTGTTGCAAGTGG+TGG | + | chr6_2:24237237-24237256 | None:intergenic | 40.0% | |
| GGATTTCATGTTGTTGCAAG+TGG | + | chr6_2:24237240-24237259 | None:intergenic | 40.0% | |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6_2:24237274-24237293 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6_2:24237275-24237294 | None:intergenic | 40.0% |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6_2:24237289-24237308 | None:intergenic | 40.0% | |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6_2:24237319-24237338 | Msa0913440:CDS | 40.0% |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6_2:24237323-24237342 | None:intergenic | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6_2:24237457-24237476 | Msa0913440:CDS | 40.0% |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6_2:24237718-24237737 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6_2:24237741-24237760 | Msa0913440:CDS | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6_2:24237920-24237939 | Msa0913440:intron | 40.0% | |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6_2:24237998-24238017 | Msa0913440:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6_2:24238001-24238020 | Msa0913440:CDS | 40.0% |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6_2:24238282-24238301 | None:intergenic | 40.0% |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6_2:24238347-24238366 | Msa0913440:intron | 40.0% | |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6_2:24238432-24238451 | Msa0913440:CDS | 40.0% | |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6_2:24238634-24238653 | Msa0913440:CDS | 40.0% |
| GAGGAAGATGAAGATGAAGA+CGG | - | chr6_2:24238674-24238693 | Msa0913440:CDS | 40.0% | |
| AATATGGCCCTGATGAATTC+TGG | - | chr6_2:24238726-24238745 | Msa0913440:five_prime_UTR | 40.0% | |
| !! | TTAGGGGGTGGAGTTGATTT+TGG | + | chr6_2:24237101-24237120 | None:intergenic | 45.0% |
| ! | ATGGAGTTTGATTTAGGGGG+TGG | + | chr6_2:24237113-24237132 | None:intergenic | 45.0% |
| ATGTTGTTGCAAGTGGTGGT+GGG | + | chr6_2:24237233-24237252 | None:intergenic | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6_2:24237273-24237292 | None:intergenic | 45.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6_2:24237281-24237300 | Msa0913440:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6_2:24237288-24237307 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6_2:24237717-24237736 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6_2:24237898-24237917 | None:intergenic | 45.0% | |
| CCATTGCCACACAATGAGTT+GGG | + | chr6_2:24238221-24238240 | None:intergenic | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6_2:24238219-24238238 | Msa0913440:intron | 45.0% | |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6_2:24238247-24238266 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6_2:24238312-24238331 | Msa0913440:intron | 45.0% | |
| TCCTCAATTAGTTCGCTCTC+TGG | + | chr6_2:24238414-24238433 | None:intergenic | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6_2:24238640-24238659 | Msa0913440:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6_2:24238647-24238666 | None:intergenic | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6_2:24238655-24238674 | Msa0913440:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6_2:24238753-24238772 | Msa0913440:five_prime_UTR | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6_2:24238761-24238780 | Msa0913440:five_prime_UTR | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6_2:24238762-24238781 | Msa0913440:five_prime_UTR | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6_2:24238790-24238809 | Msa0913440:five_prime_UTR | 45.0% | |
| CATGTTGTTGCAAGTGGTGG+TGG | + | chr6_2:24237234-24237253 | None:intergenic | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6_2:24237269-24237288 | Msa0913440:CDS | 50.0% | |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6_2:24237856-24237875 | Msa0913440:intron | 50.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6_2:24237873-24237892 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6_2:24237878-24237897 | Msa0913440:intron | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6_2:24237885-24237904 | Msa0913440:intron | 50.0% |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6_2:24238218-24238237 | Msa0913440:intron | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6_2:24238222-24238241 | None:intergenic | 50.0% | |
| GCCAGAGAGCGAACTAATTG+AGG | - | chr6_2:24238410-24238429 | Msa0913440:intron | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6_2:24238689-24238708 | Msa0913440:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6_2:24238698-24238717 | Msa0913440:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6_2:24238789-24238808 | Msa0913440:five_prime_UTR | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6_2:24238804-24238823 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6_2:24238805-24238824 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6_2:24238806-24238825 | None:intergenic | 50.0% | |
| CAGCGATGGAAGGGGGTTTA+TGG | + | chr6_2:24237161-24237180 | None:intergenic | 55.0% | |
| !!! | TTTTCTGGGGTGAGCAGCGA+TGG | + | chr6_2:24237175-24237194 | None:intergenic | 55.0% |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6_2:24237706-24237725 | Msa0913440:CDS | 55.0% | |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6_2:24237855-24237874 | Msa0913440:intron | 55.0% |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6_2:24237857-24237876 | Msa0913440:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6_2:24238227-24238246 | Msa0913440:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6_2:24238232-24238251 | Msa0913440:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6_2:24238233-24238252 | Msa0913440:CDS | 55.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6_2:24238710-24238729 | Msa0913440:exon | 55.0% | |
| TGGGGTGAGCAGCGATGGAA+GGG | + | chr6_2:24237170-24237189 | None:intergenic | 60.0% | |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6_2:24237870-24237889 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6_2:24238237-24238256 | Msa0913440:CDS | 60.0% |
| GGGTGAGCAGCGATGGAAGG+GGG | + | chr6_2:24237168-24237187 | None:intergenic | 65.0% | |
| GGGGTGAGCAGCGATGGAAG+GGG | + | chr6_2:24237169-24237188 | None:intergenic | 65.0% | |
| CTGGGGTGAGCAGCGATGGA+AGG | + | chr6_2:24237171-24237190 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 24237098 | 24238874 | 24237098 | ID=Msa0913440;Name=Msa0913440 |
| chr6_2 | mRNA | 24237098 | 24238874 | 24237098 | ID=Msa0913440-mRNA-1;Parent=Msa0913440;Name=Msa0913440-mRNA-1;_AED=0.24;_eAED=0.24;_QI=153|1|0.83|1|1|1|6|0|347 |
| chr6_2 | exon | 24237098 | 24237340 | 24237098 | ID=Msa0913440-mRNA-1:exon:4752;Parent=Msa0913440-mRNA-1 |
| chr6_2 | exon | 24237424 | 24237780 | 24237424 | ID=Msa0913440-mRNA-1:exon:4751;Parent=Msa0913440-mRNA-1 |
| chr6_2 | exon | 24237953 | 24238121 | 24237953 | ID=Msa0913440-mRNA-1:exon:4750;Parent=Msa0913440-mRNA-1 |
| chr6_2 | exon | 24238220 | 24238306 | 24238220 | ID=Msa0913440-mRNA-1:exon:4749;Parent=Msa0913440-mRNA-1 |
| chr6_2 | exon | 24238414 | 24238511 | 24238414 | ID=Msa0913440-mRNA-1:exon:4748;Parent=Msa0913440-mRNA-1 |
| chr6_2 | exon | 24238632 | 24238874 | 24238632 | ID=Msa0913440-mRNA-1:exon:4747;Parent=Msa0913440-mRNA-1 |
| chr6_2 | five_prime_UTR | 24238722 | 24238874 | 24238722 | ID=Msa0913440-mRNA-1:five_prime_utr;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24238632 | 24238721 | 24238632 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24238414 | 24238511 | 24238414 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24238220 | 24238306 | 24238220 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24237953 | 24238121 | 24237953 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24237424 | 24237780 | 24237424 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| chr6_2 | CDS | 24237098 | 24237340 | 24237098 | ID=Msa0913440-mRNA-1:cds;Parent=Msa0913440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
