Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913770 | KEH32953.1 | 39.189 | 296 | 112 | 4 | 1 | 228 | 1 | 296 | 1.53e-40 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913770 | sp|Q9SLD4|ZAT11_ARATH | 38.889 | 90 | 40 | 2 | 58 | 132 | 34 | 123 | 1.20e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0913770 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913770 | MtrunA17_Chr3g0081131 | 39.189 | 296 | 112 | 4 | 1 | 228 | 1 | 296 | 1.41e-44 | 150 |
| Msa0913770 | MtrunA17_Chr3g0081121 | 36.513 | 304 | 92 | 8 | 13 | 228 | 13 | 303 | 4.39e-34 | 124 |
| Msa0913770 | MtrunA17_Chr3g0081141 | 35.484 | 310 | 113 | 10 | 1 | 228 | 1 | 305 | 2.30e-32 | 119 |
| Msa0913770 | MtrunA17_Chr3g0079671 | 33.442 | 308 | 98 | 8 | 14 | 228 | 14 | 307 | 4.74e-31 | 115 |
| Msa0913770 | MtrunA17_Chr7g0224221 | 31.325 | 332 | 106 | 10 | 1 | 211 | 1 | 331 | 6.55e-30 | 114 |
| Msa0913770 | MtrunA17_Chr7g0222661 | 30.408 | 319 | 100 | 9 | 1 | 228 | 1 | 288 | 2.46e-24 | 97.8 |
| Msa0913770 | MtrunA17_Chr7g0222671 | 35.602 | 191 | 66 | 7 | 1 | 169 | 1 | 156 | 4.89e-20 | 84.0 |
| Msa0913770 | MtrunA17_Chr5g0396031 | 39.216 | 102 | 44 | 3 | 95 | 178 | 40 | 141 | 2.84e-14 | 71.2 |
| Msa0913770 | MtrunA17_Chr1g0152661 | 40.952 | 105 | 34 | 3 | 45 | 125 | 59 | 159 | 1.49e-12 | 64.7 |
| Msa0913770 | MtrunA17_Chr1g0207451 | 42.169 | 83 | 32 | 2 | 59 | 125 | 71 | 153 | 2.96e-12 | 64.3 |
| Msa0913770 | MtrunA17_Chr1g0182161 | 38.571 | 70 | 29 | 1 | 71 | 126 | 39 | 108 | 3.18e-11 | 60.1 |
| Msa0913770 | MtrunA17_Chr2g0327901 | 35.556 | 90 | 51 | 1 | 58 | 140 | 21 | 110 | 3.61e-11 | 58.9 |
| Msa0913770 | MtrunA17_Chr7g0263121 | 30.579 | 121 | 62 | 4 | 59 | 157 | 31 | 151 | 5.29e-11 | 59.3 |
| Msa0913770 | MtrunA17_Chr3g0134711 | 40.260 | 77 | 22 | 1 | 73 | 125 | 88 | 164 | 6.33e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913770 | AT2G37430.1 | 38.889 | 90 | 40 | 2 | 58 | 132 | 34 | 123 | 1.22e-12 | 64.3 |
| Msa0913770 | AT5G43170.1 | 40.659 | 91 | 39 | 3 | 46 | 125 | 54 | 140 | 3.82e-12 | 63.5 |
| Msa0913770 | AT3G53600.1 | 32.540 | 126 | 61 | 4 | 13 | 126 | 3 | 116 | 1.05e-11 | 62.0 |
| Msa0913770 | AT5G59820.1 | 35.714 | 84 | 37 | 2 | 56 | 128 | 30 | 107 | 7.29e-11 | 59.3 |
Find 45 sgRNAs with CRISPR-Local
Find 431 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTACCCCACACAATTT+TGG | 0.245318 | 6_2:+25478980 | Msa0913770:CDS |
| AAAGACGATCCAGGGATAGA+TGG | 0.354833 | 6_2:+25478545 | Msa0913770:CDS |
| GATAGCTTCACAAAATCAAT+AGG | 0.358391 | 6_2:-25478521 | None:intergenic |
| AGAATATCGTTTCTTGCAAA+TGG | 0.368519 | 6_2:-25478711 | None:intergenic |
| AGAATATCGTTTATTGCAAA+AGG | 0.400965 | 6_2:-25478615 | None:intergenic |
| GGGTAACCATAGGGTTATAA+GGG | 0.408071 | 6_2:-25478967 | None:intergenic |
| TTGTTGTTCCCATCTATCCC+TGG | 0.414799 | 6_2:-25478554 | None:intergenic |
| GGTAGAGAAGCTGGAGGATT+CGG | 0.421870 | 6_2:-25478402 | None:intergenic |
| CCTTATAATTATAGGTCACT+TGG | 0.424341 | 6_2:+25478914 | Msa0913770:intron |
| TATTCTTCTGCACAAGCGTT+GGG | 0.445505 | 6_2:+25478632 | Msa0913770:CDS |
| CTTATAATTATAGGTCACTT+GGG | 0.475163 | 6_2:+25478915 | Msa0913770:intron |
| GGGGTAACCATAGGGTTATA+AGG | 0.478892 | 6_2:-25478968 | None:intergenic |
| TTGTGAAGTGGTAGAGAAGC+TGG | 0.481970 | 6_2:-25478411 | None:intergenic |
| GGATGGTACTTCTTCAATGT+TGG | 0.483089 | 6_2:-25484265 | None:intergenic |
| AAGCTATCGAAAGACGATCC+AGG | 0.488376 | 6_2:+25478536 | Msa0913770:CDS |
| TATTCTACTGCACAAGCGTT+GGG | 0.488486 | 6_2:+25478728 | Msa0913770:CDS |
| GGTAACCATAGGGTTATAAG+GGG | 0.503842 | 6_2:-25478966 | None:intergenic |
| TGTGGCTTCTAATTCTTCTG+AGG | 0.508957 | 6_2:+25484218 | Msa0913770:CDS |
| AAATTGTGTGGGGTAACCAT+AGG | 0.511212 | 6_2:-25478977 | None:intergenic |
| ACCATCCGATTCTGACTCAT+CGG | 0.513655 | 6_2:+25484281 | Msa0913770:CDS |
| TACAGAAAAGCAAGTTATTG+TGG | 0.514359 | 6_2:+25484200 | Msa0913770:CDS |
| TCTCCTTCCTATGAGCGCTC+TGG | 0.526806 | 6_2:-25478661 | None:intergenic |
| ATATTCTTCTGCACAAGCGT+TGG | 0.528463 | 6_2:+25478631 | Msa0913770:CDS |
| GAGGACACCAGAGCGCTCAT+AGG | 0.532993 | 6_2:+25478654 | Msa0913770:CDS |
| AAGACGATCCAGGGATAGAT+GGG | 0.535400 | 6_2:+25478546 | Msa0913770:CDS |
| AAGACCCGATGAGTCAGAAT+CGG | 0.537987 | 6_2:-25484286 | None:intergenic |
| GAGGACACAAGACCGCTCAT+AGG | 0.547668 | 6_2:+25478750 | Msa0913770:CDS |
| GACTATACCCAAAATTGTGT+GGG | 0.550193 | 6_2:-25478988 | None:intergenic |
| ATATTCTACTGCACAAGCGT+TGG | 0.562358 | 6_2:+25478727 | Msa0913770:CDS |
| ACACCAGAGCGCTCATAGGA+AGG | 0.562791 | 6_2:+25478658 | Msa0913770:CDS |
| CCATCCGATTCTGACTCATC+GGG | 0.565185 | 6_2:+25484282 | Msa0913770:CDS |
| AATTGTGTGGGGTAACCATA+GGG | 0.571739 | 6_2:-25478976 | None:intergenic |
| ATCACTTTGATCTTGTGAAG+TGG | 0.572961 | 6_2:-25478423 | None:intergenic |
| ACACAAGACCGCTCATAGGA+AGG | 0.576634 | 6_2:+25478754 | Msa0913770:CDS |
| TTATAATTATAGGTCACTTG+GGG | 0.595180 | 6_2:+25478916 | Msa0913770:intron |
| TAGGTCACTTGGGGTTAGCA+CGG | 0.597439 | 6_2:+25478925 | Msa0913770:intron |
| CGACTATACCCAAAATTGTG+TGG | 0.608808 | 6_2:-25478989 | None:intergenic |
| AGCTATCGAAAGACGATCCA+GGG | 0.608957 | 6_2:+25478537 | Msa0913770:CDS |
| GTAACCATAGGGTTATAAGG+GGG | 0.632981 | 6_2:-25478965 | None:intergenic |
| TCTTCTGCACAAGCGTTGGG+AGG | 0.641060 | 6_2:+25478635 | Msa0913770:CDS |
| CCCGATGAGTCAGAATCGGA+TGG | 0.643967 | 6_2:-25484282 | None:intergenic |
| AGCATGTTCCTTCCTATGAG+CGG | 0.646145 | 6_2:-25478762 | None:intergenic |
| ACTATACCCAAAATTGTGTG+GGG | 0.671860 | 6_2:-25478987 | None:intergenic |
| TCTACTGCACAAGCGTTGGG+AGG | 0.691089 | 6_2:+25478731 | Msa0913770:CDS |
| TGAAGTGGTAGAGAAGCTGG+AGG | 0.727401 | 6_2:-25478408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTACACCTTATAATTAT+AGG | + | chr6_2:25478906-25478925 | Msa0913770:intron | 15.0% |
| !! | AATAAATTGAAGTTTATTGA+TGG | + | chr6_2:25479672-25479691 | Msa0913770:intron | 15.0% |
| !! | TAGAAAAACAACATAAACAA+AGG | + | chr6_2:25478816-25478835 | Msa0913770:CDS | 20.0% |
| !! | AAATGCAACAAATGATAAAA+TGG | - | chr6_2:25479277-25479296 | None:intergenic | 20.0% |
| !!! | TTGCTTCAAATTGTTAATTT+TGG | - | chr6_2:25479901-25479920 | None:intergenic | 20.0% |
| !!! | AAAATTAACAATTTGAAGCA+AGG | + | chr6_2:25479900-25479919 | Msa0913770:intron | 20.0% |
| !! | GTTAAATGATCAATTTAATG+TGG | + | chr6_2:25480091-25480110 | Msa0913770:intron | 20.0% |
| !! | TAAATCTGATTTAGATTGAA+GGG | - | chr6_2:25480639-25480658 | None:intergenic | 20.0% |
| !! | ATAAATCTGATTTAGATTGA+AGG | - | chr6_2:25480640-25480659 | None:intergenic | 20.0% |
| !! | TTCAATCTAAATCAGATTTA+TGG | + | chr6_2:25480639-25480658 | Msa0913770:intron | 20.0% |
| !! | ATCAAATTAAGAGTGAATAA+TGG | - | chr6_2:25480839-25480858 | None:intergenic | 20.0% |
| !! | TAAGAAACATAATCAGAAAT+AGG | - | chr6_2:25482192-25482211 | None:intergenic | 20.0% |
| !! | TTGTCAAAGAAAATATTGTT+TGG | + | chr6_2:25482998-25483017 | Msa0913770:intron | 20.0% |
| !! | AAATGCAACAAATGATAAAA+TGG | - | chr6_2:25479277-25479296 | None:intergenic | 20.0% |
| !! | TTGCATTTCATAACAATAAT+GGG | + | chr6_2:25484052-25484071 | Msa0913770:intron | 20.0% |
| !! | CATGGTTCAAATAATAAATT+TGG | + | chr6_2:25484120-25484139 | Msa0913770:intron | 20.0% |
| !!! | CTTTTTGGATTTTGATTTCA+AGG | - | chr6_2:25478501-25478520 | None:intergenic | 25.0% |
| ! | AGAATATCGTTTATTGCAAA+AGG | - | chr6_2:25478618-25478637 | None:intergenic | 25.0% |
| ! | CTTATAATTATAGGTCACTT+GGG | + | chr6_2:25478915-25478934 | Msa0913770:intron | 25.0% |
| ! | TTATAATTATAGGTCACTTG+GGG | + | chr6_2:25478916-25478935 | Msa0913770:intron | 25.0% |
| ! | ATATTTCTCAATGACATAAG+AGG | - | chr6_2:25479046-25479065 | None:intergenic | 25.0% |
| ! | TCTTATGTCATTGAGAAATA+TGG | + | chr6_2:25479045-25479064 | Msa0913770:intron | 25.0% |
| ! | CTTATGTCATTGAGAAATAT+GGG | + | chr6_2:25479046-25479065 | Msa0913770:intron | 25.0% |
| !! | ATTTGTTGCATTTCATAACA+TGG | + | chr6_2:25479284-25479303 | Msa0913770:intron | 25.0% |
| !! | GAAATAATCCAAAACAGTTT+TGG | - | chr6_2:25479928-25479947 | None:intergenic | 25.0% |
| ! | AATACACTTTGTTAATGGAA+GGG | - | chr6_2:25480148-25480167 | None:intergenic | 25.0% |
| ! | TAGTGAATACACTTTGTTAA+TGG | - | chr6_2:25480153-25480172 | None:intergenic | 25.0% |
| ! | GATTATTGTTATCAAAAGCA+TGG | + | chr6_2:25480350-25480369 | Msa0913770:intron | 25.0% |
| !! | ATATTGTTTCTTCAATTCAC+TGG | + | chr6_2:25480687-25480706 | Msa0913770:intron | 25.0% |
| ! | TGGGTAAATTAACAAGTTTA+GGG | - | chr6_2:25480736-25480755 | None:intergenic | 25.0% |
| ! | TTGGGTAAATTAACAAGTTT+AGG | - | chr6_2:25480737-25480756 | None:intergenic | 25.0% |
| !!! | AAACTTGTTAATTTACCCAA+TGG | + | chr6_2:25480737-25480756 | Msa0913770:intron | 25.0% |
| ! | ACATTGTCAATGTAAAATGT+AGG | - | chr6_2:25480806-25480825 | None:intergenic | 25.0% |
| ! | TGATAATAAGTGTTTCTTAC+AGG | + | chr6_2:25480907-25480926 | Msa0913770:intron | 25.0% |
| !! | AGGAATAAAGGTATGATTAT+TGG | - | chr6_2:25481050-25481069 | None:intergenic | 25.0% |
| ! | TACTTGTGATTATGAATAGA+GGG | - | chr6_2:25481289-25481308 | None:intergenic | 25.0% |
| ! | ACACATCAGATTTAGATTTA+AGG | - | chr6_2:25481360-25481379 | None:intergenic | 25.0% |
| !! | AATGAAGTTTTTGACATGTT+GGG | - | chr6_2:25481383-25481402 | None:intergenic | 25.0% |
| !! | TAATGAAGTTTTTGACATGT+TGG | - | chr6_2:25481384-25481403 | None:intergenic | 25.0% |
| ! | CAGTTTAGATTGGTATAAAA+GGG | - | chr6_2:25481590-25481609 | None:intergenic | 25.0% |
| ! | TATTAGTAACTATAGGTTCA+GGG | - | chr6_2:25482044-25482063 | None:intergenic | 25.0% |
| ! | TTATTAGTAACTATAGGTTC+AGG | - | chr6_2:25482045-25482064 | None:intergenic | 25.0% |
| ! | TTTACATACTTGATTAGGTT+TGG | - | chr6_2:25482673-25482692 | None:intergenic | 25.0% |
| ! | TCTTCTTAATGAACAAAGAA+TGG | - | chr6_2:25482797-25482816 | None:intergenic | 25.0% |
| ! | TTGGATAAAAGAATGTTGAA+AGG | - | chr6_2:25483749-25483768 | None:intergenic | 25.0% |
| ! | GTTGCATTTCATAACAATAA+TGG | + | chr6_2:25484051-25484070 | Msa0913770:intron | 25.0% |
| ! | TGCATTTCATAACAATAATG+GGG | + | chr6_2:25484053-25484072 | Msa0913770:intron | 25.0% |
| ! | CACAAAATCAATAGGCTTTT+TGG | - | chr6_2:25478516-25478535 | None:intergenic | 30.0% |
| GATAGCTTCACAAAATCAAT+AGG | - | chr6_2:25478524-25478543 | None:intergenic | 30.0% | |
| AGAATATCGTTTCTTGCAAA+TGG | - | chr6_2:25478714-25478733 | None:intergenic | 30.0% | |
| TTTAGAAAAAGCTCACAAGA+AGG | + | chr6_2:25478784-25478803 | Msa0913770:CDS | 30.0% | |
| GTACTTGAATAACTACGATA+GGG | - | chr6_2:25478884-25478903 | None:intergenic | 30.0% | |
| AGTACTTGAATAACTACGAT+AGG | - | chr6_2:25478885-25478904 | None:intergenic | 30.0% | |
| CCAAGTGACCTATAATTATA+AGG | - | chr6_2:25478917-25478936 | None:intergenic | 30.0% | |
| CCTTATAATTATAGGTCACT+TGG | + | chr6_2:25478914-25478933 | Msa0913770:intron | 30.0% | |
| ACACAATGTGATAAGATTCA+AGG | - | chr6_2:25479210-25479229 | None:intergenic | 30.0% | |
| TTTGTAACTAACTTTCTCCA+TGG | - | chr6_2:25479334-25479353 | None:intergenic | 30.0% | |
| AGAAATTTCTGCAACAACAA+TGG | - | chr6_2:25479399-25479418 | None:intergenic | 30.0% | |
| !!! | TTCTTCTTTGTTTTCCACAA+TGG | + | chr6_2:25479506-25479525 | Msa0913770:intron | 30.0% |
| ! | GAAGTTTATTGATGGTTCTA+TGG | + | chr6_2:25479680-25479699 | Msa0913770:intron | 30.0% |
| GCAATCATCTTATTCAATCT+TGG | + | chr6_2:25479748-25479767 | Msa0913770:intron | 30.0% | |
| TCACTGAAATGAAAACTCTA+TGG | + | chr6_2:25479946-25479965 | Msa0913770:intron | 30.0% | |
| CACTGAAATGAAAACTCTAT+GGG | + | chr6_2:25479947-25479966 | Msa0913770:intron | 30.0% | |
| ! | AGCAAGAAATTTTAGACTTG+AGG | + | chr6_2:25480043-25480062 | Msa0913770:intron | 30.0% |
| !! | AAGTCATTCAGTTTTTGACT+GGG | + | chr6_2:25480069-25480088 | Msa0913770:intron | 30.0% |
| AAAAACTCAAGTTCTTATGC+TGG | + | chr6_2:25480115-25480134 | Msa0913770:intron | 30.0% | |
| GAATACACTTTGTTAATGGA+AGG | - | chr6_2:25480149-25480168 | None:intergenic | 30.0% | |
| ATACTTCTCCTGAGAAATAT+TGG | - | chr6_2:25480483-25480502 | None:intergenic | 30.0% | |
| AGTATGAATATGATTGGTAC+TGG | - | chr6_2:25480561-25480580 | None:intergenic | 30.0% | |
| ! | TGAAGGAGTATGAATATGAT+TGG | - | chr6_2:25480567-25480586 | None:intergenic | 30.0% |
| ! | GATTTATGGCTTTTAGATTC+TGG | + | chr6_2:25480653-25480672 | Msa0913770:intron | 30.0% |
| TGAAGAAACAATATGCTCAT+TGG | - | chr6_2:25480681-25480700 | None:intergenic | 30.0% | |
| ! | TTTAGGGGTAATTTTGTGAT+AGG | - | chr6_2:25480720-25480739 | None:intergenic | 30.0% |
| GGGTAAATTAACAAGTTTAG+GGG | - | chr6_2:25480735-25480754 | None:intergenic | 30.0% | |
| ACTAAAACAGAAGATCCATT+GGG | - | chr6_2:25480755-25480774 | None:intergenic | 30.0% | |
| AACTAAAACAGAAGATCCAT+TGG | - | chr6_2:25480756-25480775 | None:intergenic | 30.0% | |
| !!! | TCTGTTTTAGTTGATATTGC+TGG | + | chr6_2:25480764-25480783 | Msa0913770:intron | 30.0% |
| AAATGTAGGAGTGAAATGAA+TGG | - | chr6_2:25480792-25480811 | None:intergenic | 30.0% | |
| AATAGCAGACAAAGGAATAA+AGG | - | chr6_2:25481062-25481081 | None:intergenic | 30.0% | |
| TTATTCCTTTGTCTGCTATT+TGG | + | chr6_2:25481062-25481081 | Msa0913770:intron | 30.0% | |
| ! | CTAATCTTTTGTAAGAGACA+TGG | - | chr6_2:25481102-25481121 | None:intergenic | 30.0% |
| TTGGAATCAAAATGCAAAGA+AGG | - | chr6_2:25481145-25481164 | None:intergenic | 30.0% | |
| AAAATGACATATATCACAGG+TGG | - | chr6_2:25481170-25481189 | None:intergenic | 30.0% | |
| AGCAAAATGACATATATCAC+AGG | - | chr6_2:25481173-25481192 | None:intergenic | 30.0% | |
| !!! | GTGATATATGTCATTTTGCT+AGG | + | chr6_2:25481173-25481192 | Msa0913770:intron | 30.0% |
| ACAGATGAACTAAGAGAAAA+TGG | - | chr6_2:25481211-25481230 | None:intergenic | 30.0% | |
| AACTCTTGCACTTTGATATT+TGG | + | chr6_2:25481248-25481267 | Msa0913770:intron | 30.0% | |
| ACTCTTGCACTTTGATATTT+GGG | + | chr6_2:25481249-25481268 | Msa0913770:intron | 30.0% | |
| GTACTTGTGATTATGAATAG+AGG | - | chr6_2:25481290-25481309 | None:intergenic | 30.0% | |
| ! | CTATACTTGATGATTACAGT+AGG | + | chr6_2:25481317-25481336 | Msa0913770:intron | 30.0% |
| ! | ATGATTACAGTAGGTTTGTT+TGG | + | chr6_2:25481326-25481345 | Msa0913770:intron | 30.0% |
| CATCAGATTTAGATTTAAGG+AGG | - | chr6_2:25481357-25481376 | None:intergenic | 30.0% | |
| !! | TTTTAGGTGTTATGTGAAAC+TGG | - | chr6_2:25481420-25481439 | None:intergenic | 30.0% |
| ! | CCTTAGAAGCATAAAATGAA+GGG | - | chr6_2:25481477-25481496 | None:intergenic | 30.0% |
| ! | CCTTCATTTTATGCTTCTAA+GGG | + | chr6_2:25481475-25481494 | Msa0913770:intron | 30.0% |
| ! | CATCAACATTTGTTGAATGT+AGG | + | chr6_2:25481559-25481578 | Msa0913770:intron | 30.0% |
| GCAGTTTAGATTGGTATAAA+AGG | - | chr6_2:25481591-25481610 | None:intergenic | 30.0% | |
| GATAAGGTGATTTATTGTGA+AGG | - | chr6_2:25481681-25481700 | None:intergenic | 30.0% | |
| TTGTTGTGAAGCAATTGATA+AGG | - | chr6_2:25481697-25481716 | None:intergenic | 30.0% | |
| ! | ATTGATAGCTTCAAAGTCTT+TGG | + | chr6_2:25481727-25481746 | Msa0913770:intron | 30.0% |
| ! | TTTTGTTCTATGTGCTTGAA+GGG | - | chr6_2:25481773-25481792 | None:intergenic | 30.0% |
| ! | ATTTTGTTCTATGTGCTTGA+AGG | - | chr6_2:25481774-25481793 | None:intergenic | 30.0% |
| CAATTAGTAGTGATAGAAGA+GGG | - | chr6_2:25481940-25481959 | None:intergenic | 30.0% | |
| CTCTTCTATCACTACTAATT+GGG | + | chr6_2:25481939-25481958 | Msa0913770:intron | 30.0% | |
| ! | GGTGTGTTATTAGTAACTAT+AGG | - | chr6_2:25482051-25482070 | None:intergenic | 30.0% |
| !! | ATATAGTCTTGTAAATGGGA+AGG | - | chr6_2:25482132-25482151 | None:intergenic | 30.0% |
| !! | GCAGATATAGTCTTGTAAAT+GGG | - | chr6_2:25482136-25482155 | None:intergenic | 30.0% |
| !! | TGCAGATATAGTCTTGTAAA+TGG | - | chr6_2:25482137-25482156 | None:intergenic | 30.0% |
| AAGCTAGTAAATTCACTTGT+TGG | + | chr6_2:25482286-25482305 | Msa0913770:intron | 30.0% | |
| ATTTCTGCTCTTGAAAATAC+TGG | + | chr6_2:25482330-25482349 | Msa0913770:intron | 30.0% | |
| AAAGTTAAACATCATGCTGA+TGG | + | chr6_2:25482414-25482433 | Msa0913770:intron | 30.0% | |
| TCTTTCCTTATATCTCTCAA+TGG | - | chr6_2:25482442-25482461 | None:intergenic | 30.0% | |
| !! | AAATGTTATACTCAGGTTGA+GGG | + | chr6_2:25482471-25482490 | Msa0913770:intron | 30.0% |
| GTTAACAATGCTTTCTTACA+TGG | + | chr6_2:25482597-25482616 | Msa0913770:intron | 30.0% | |
| AGCAGTTTACATACTTGATT+AGG | - | chr6_2:25482678-25482697 | None:intergenic | 30.0% | |
| AAACTGCTGAAATCATTGTA+TGG | + | chr6_2:25482690-25482709 | Msa0913770:intron | 30.0% | |
| TCCTTCAAGATTAAAGATCT+TGG | + | chr6_2:25482918-25482937 | Msa0913770:intron | 30.0% | |
| !! | AGCCAAGAAAGTATTTCAAT+TGG | - | chr6_2:25482944-25482963 | None:intergenic | 30.0% |
| !! | TGTAATATCTGGTCTTGTAT+TGG | - | chr6_2:25483168-25483187 | None:intergenic | 30.0% |
| AAATTGACTAAGTTGTTGAG+TGG | - | chr6_2:25483195-25483214 | None:intergenic | 30.0% | |
| AAATACTTGAAGAAATGTCC+TGG | + | chr6_2:25483263-25483282 | Msa0913770:intron | 30.0% | |
| ATGAACAATGAAGATTGTCT+GGG | - | chr6_2:25483305-25483324 | None:intergenic | 30.0% | |
| AATGAACAATGAAGATTGTC+TGG | - | chr6_2:25483306-25483325 | None:intergenic | 30.0% | |
| CAATCTTCATTGTTCATTTC+TGG | + | chr6_2:25483308-25483327 | Msa0913770:intron | 30.0% | |
| ! | AGATACAGTCAATTGTTTCT+TGG | - | chr6_2:25483429-25483448 | None:intergenic | 30.0% |
| GAAATCTGCTAATTGATCTT+TGG | - | chr6_2:25483702-25483721 | None:intergenic | 30.0% | |
| ! | AACATTCTTTTATCCAAGCT+GGG | + | chr6_2:25483752-25483771 | Msa0913770:intron | 30.0% |
| ACACAATGTGATAAGATTCA+AGG | - | chr6_2:25479210-25479229 | None:intergenic | 30.0% | |
| ! | AATAATGGGGTTGAAAATCT+AGG | + | chr6_2:25484066-25484085 | Msa0913770:intron | 30.0% |
| TACAGAAAAGCAAGTTATTG+TGG | + | chr6_2:25484200-25484219 | Msa0913770:CDS | 30.0% | |
| ATCACTTTGATCTTGTGAAG+TGG | - | chr6_2:25478426-25478445 | None:intergenic | 35.0% | |
| TTCTCACTCGAAAAAAGTAG+TGG | + | chr6_2:25478448-25478467 | Msa0913770:CDS | 35.0% | |
| !! | GAAAAAAGTAGTGGACATGA+AGG | + | chr6_2:25478457-25478476 | Msa0913770:CDS | 35.0% |
| ! | CATAAACAAAGGTATGATCG+CGG | + | chr6_2:25478827-25478846 | Msa0913770:intron | 35.0% |
| ACTATACCCAAAATTGTGTG+GGG | - | chr6_2:25478990-25479009 | None:intergenic | 35.0% | |
| GACTATACCCAAAATTGTGT+GGG | - | chr6_2:25478991-25479010 | None:intergenic | 35.0% | |
| TTCTCAATGACATAAGAGGA+TGG | - | chr6_2:25479042-25479061 | None:intergenic | 35.0% | |
| TGTCATTGAGAAATATGGGA+AGG | + | chr6_2:25479050-25479069 | Msa0913770:intron | 35.0% | |
| TTGATTGTTACGAACCATTG+TGG | - | chr6_2:25479523-25479542 | None:intergenic | 35.0% | |
| CGATTCAAATCATCATCATC+TGG | - | chr6_2:25479711-25479730 | None:intergenic | 35.0% | |
| ! | CAAGTCATTCAGTTTTTGAC+TGG | + | chr6_2:25480068-25480087 | Msa0913770:intron | 35.0% |
| GTATTCACTAGTGATTCAAG+AGG | + | chr6_2:25480163-25480182 | Msa0913770:intron | 35.0% | |
| ! | GATCCTTGCTTCTGAAAATT+GGG | - | chr6_2:25480380-25480399 | None:intergenic | 35.0% |
| ! | AGATCCTTGCTTCTGAAAAT+TGG | - | chr6_2:25480381-25480400 | None:intergenic | 35.0% |
| ! | AATATGATTGGTACTGGATG+TGG | - | chr6_2:25480555-25480574 | None:intergenic | 35.0% |
| GATATACCTGAACCAGTAAA+AGG | - | chr6_2:25480599-25480618 | None:intergenic | 35.0% | |
| TTGAAGGGAACAAGTGAAAA+TGG | - | chr6_2:25480624-25480643 | None:intergenic | 35.0% | |
| AAATGCCAAATAGCAGACAA+AGG | - | chr6_2:25481070-25481089 | None:intergenic | 35.0% | |
| GCTATTTGGCATTTCAAACT+TGG | + | chr6_2:25481076-25481095 | Msa0913770:intron | 35.0% | |
| CTCTTGCACTTTGATATTTG+GGG | + | chr6_2:25481250-25481269 | Msa0913770:intron | 35.0% | |
| ACATAACACCTAAAACTGTC+AGG | + | chr6_2:25481425-25481444 | Msa0913770:intron | 35.0% | |
| ! | TTATCAGTCCTGACAGTTTT+AGG | - | chr6_2:25481436-25481455 | None:intergenic | 35.0% |
| AAAACTGTCAGGACTGATAA+TGG | + | chr6_2:25481436-25481455 | Msa0913770:intron | 35.0% | |
| AAACTGTCAGGACTGATAAT+GGG | + | chr6_2:25481437-25481456 | Msa0913770:intron | 35.0% | |
| AATGAAGGGTTAAGAAACTC+AGG | - | chr6_2:25481463-25481482 | None:intergenic | 35.0% | |
| ! | CCCTTCATTTTATGCTTCTA+AGG | + | chr6_2:25481474-25481493 | Msa0913770:intron | 35.0% |
| ! | CCCTTAGAAGCATAAAATGA+AGG | - | chr6_2:25481478-25481497 | None:intergenic | 35.0% |
| TTGAAACTCCCCAACAAAAT+GGG | + | chr6_2:25481521-25481540 | Msa0913770:intron | 35.0% | |
| ! | AACATTTGTTGAATGTAGGC+AGG | + | chr6_2:25481563-25481582 | Msa0913770:intron | 35.0% |
| ! | ACATTTGTTGAATGTAGGCA+GGG | + | chr6_2:25481564-25481583 | Msa0913770:intron | 35.0% |
| GATGAAGGTAGCATGTAAAA+GGG | - | chr6_2:25481635-25481654 | None:intergenic | 35.0% | |
| TGATGAAGGTAGCATGTAAA+AGG | - | chr6_2:25481636-25481655 | None:intergenic | 35.0% | |
| GGTGACTCTATTAATGATGA+AGG | - | chr6_2:25481650-25481669 | None:intergenic | 35.0% | |
| AGGTGATTTATTGTGAAGGT+GGG | - | chr6_2:25481677-25481696 | None:intergenic | 35.0% | |
| AAGGTGATTTATTGTGAAGG+TGG | - | chr6_2:25481678-25481697 | None:intergenic | 35.0% | |
| !! | CTTTGAAGCTATCAATGTCA+GGG | - | chr6_2:25481723-25481742 | None:intergenic | 35.0% |
| !! | ACTTTGAAGCTATCAATGTC+AGG | - | chr6_2:25481724-25481743 | None:intergenic | 35.0% |
| ! | GCCAGAAAATCAGTTTTTCT+TGG | + | chr6_2:25481805-25481824 | Msa0913770:intron | 35.0% |
| !! | GCCAAGAAAAACTGATTTTC+TGG | - | chr6_2:25481809-25481828 | None:intergenic | 35.0% |
| ! | GTTTTTCTTGGCTACACTAT+TGG | + | chr6_2:25481817-25481836 | Msa0913770:intron | 35.0% |
| !!! | GGCTACACTATTGGTTTTAA+AGG | + | chr6_2:25481826-25481845 | Msa0913770:intron | 35.0% |
| CCAATTAGTAGTGATAGAAG+AGG | - | chr6_2:25481941-25481960 | None:intergenic | 35.0% | |
| CCTCTTCTATCACTACTAAT+TGG | + | chr6_2:25481938-25481957 | Msa0913770:intron | 35.0% | |
| ! | AAAGCAAAAGCACAATGAGA+AGG | - | chr6_2:25482228-25482247 | None:intergenic | 35.0% |
| ! | TTTACTAGCTTCAGCATATG+TGG | - | chr6_2:25482277-25482296 | None:intergenic | 35.0% |
| TGGATCCATTGAGAGATATA+AGG | + | chr6_2:25482434-25482453 | Msa0913770:intron | 35.0% | |
| TGTTGCCAAATGTTATACTC+AGG | + | chr6_2:25482464-25482483 | Msa0913770:intron | 35.0% | |
| CTCAACCTGAGTATAACATT+TGG | - | chr6_2:25482472-25482491 | None:intergenic | 35.0% | |
| ! | CAAATGTTATACTCAGGTTG+AGG | + | chr6_2:25482470-25482489 | Msa0913770:intron | 35.0% |
| AGTTCTTACAGTAGTAAGCT+TGG | - | chr6_2:25482529-25482548 | None:intergenic | 35.0% | |
| TGTAAGAACTGTGATTGCTT+TGG | + | chr6_2:25482539-25482558 | Msa0913770:intron | 35.0% | |
| AATGTGCCAATGATTGATAG+AGG | - | chr6_2:25482565-25482584 | None:intergenic | 35.0% | |
| TTTCTTACATGGAGATTTGC+AGG | + | chr6_2:25482608-25482627 | Msa0913770:intron | 35.0% | |
| ACATACTTGATTAGGTTTGG+AGG | - | chr6_2:25482670-25482689 | None:intergenic | 35.0% | |
| ATCATTGTATGGTCTCAAAC+AGG | + | chr6_2:25482701-25482720 | Msa0913770:intron | 35.0% | |
| CACTTCTTTCACTGCTTTAT+TGG | + | chr6_2:25482821-25482840 | Msa0913770:intron | 35.0% | |
| GTGGATGATGTTATTATCAC+TGG | + | chr6_2:25482849-25482868 | Msa0913770:intron | 35.0% | |
| !! | TAATCTTGAAGGAAGTGTTG+AGG | - | chr6_2:25482911-25482930 | None:intergenic | 35.0% |
| GCCAAGATCTTTAATCTTGA+AGG | - | chr6_2:25482922-25482941 | None:intergenic | 35.0% | |
| GGCCAATTGAAATACTTTCT+TGG | + | chr6_2:25482939-25482958 | Msa0913770:intron | 35.0% | |
| TCTGTATGAAGCTTACATGA+AGG | - | chr6_2:25483080-25483099 | None:intergenic | 35.0% | |
| TGAGTGGCAAATGTAATATC+TGG | - | chr6_2:25483179-25483198 | None:intergenic | 35.0% | |
| !! | AAATAGATCTTCTAGAGTCC+AGG | - | chr6_2:25483361-25483380 | None:intergenic | 35.0% |
| ! | GACTCTAGAAGATCTATTTC+AGG | + | chr6_2:25483362-25483381 | Msa0913770:intron | 35.0% |
| CTGTTGAAACATGAAGATCA+TGG | - | chr6_2:25483526-25483545 | None:intergenic | 35.0% | |
| TCTAGAGATTGACTGTCATT+TGG | + | chr6_2:25483628-25483647 | Msa0913770:intron | 35.0% | |
| ! | AATTGATCTTTGGAGGAAAC+AGG | - | chr6_2:25483692-25483711 | None:intergenic | 35.0% |
| ATCTGCTAATTGATCTTTGG+AGG | - | chr6_2:25483699-25483718 | None:intergenic | 35.0% | |
| AAAAGAATGTTGAAAGGCTG+AGG | - | chr6_2:25483743-25483762 | None:intergenic | 35.0% | |
| ! | CAACATTCTTTTATCCAAGC+TGG | + | chr6_2:25483751-25483770 | Msa0913770:intron | 35.0% |
| ATATTCTTCTGCACAAGCGT+TGG | + | chr6_2:25478631-25478650 | Msa0913770:CDS | 40.0% | |
| TATTCTTCTGCACAAGCGTT+GGG | + | chr6_2:25478632-25478651 | Msa0913770:CDS | 40.0% | |
| ATATTCTACTGCACAAGCGT+TGG | + | chr6_2:25478727-25478746 | Msa0913770:CDS | 40.0% | |
| TATTCTACTGCACAAGCGTT+GGG | + | chr6_2:25478728-25478747 | Msa0913770:CDS | 40.0% | |
| AAAACCCCCTTATAACCCTA+TGG | + | chr6_2:25478961-25478980 | Msa0913770:CDS | 40.0% | |
| GTAACCATAGGGTTATAAGG+GGG | - | chr6_2:25478968-25478987 | None:intergenic | 40.0% | |
| GGTAACCATAGGGTTATAAG+GGG | - | chr6_2:25478969-25478988 | None:intergenic | 40.0% | |
| GGGTAACCATAGGGTTATAA+GGG | - | chr6_2:25478970-25478989 | None:intergenic | 40.0% | |
| AATTGTGTGGGGTAACCATA+GGG | - | chr6_2:25478979-25478998 | None:intergenic | 40.0% | |
| AAATTGTGTGGGGTAACCAT+AGG | - | chr6_2:25478980-25478999 | None:intergenic | 40.0% | |
| ! | ATGGTTACCCCACACAATTT+TGG | + | chr6_2:25478980-25478999 | Msa0913770:CDS | 40.0% |
| ! | TGGTTACCCCACACAATTTT+GGG | + | chr6_2:25478981-25479000 | Msa0913770:CDS | 40.0% |
| CGACTATACCCAAAATTGTG+TGG | - | chr6_2:25478992-25479011 | None:intergenic | 40.0% | |
| TGCAAGTAACTTCCTTAGCT+TGG | + | chr6_2:25479134-25479153 | Msa0913770:intron | 40.0% | |
| ! | AGCCTTTTCTCTCATTTCCA+TGG | + | chr6_2:25479314-25479333 | Msa0913770:intron | 40.0% |
| CTCCATGGAAATGAGAGAAA+AGG | - | chr6_2:25479319-25479338 | None:intergenic | 40.0% | |
| TAGAACACAGACTCTGTATC+AGG | - | chr6_2:25479546-25479565 | None:intergenic | 40.0% | |
| GGAGTAACAAGAACAGAGTT+TGG | - | chr6_2:25479588-25479607 | None:intergenic | 40.0% | |
| CTTGTTACTCCTCCATTAGA+TGG | + | chr6_2:25479597-25479616 | Msa0913770:intron | 40.0% | |
| TAATTGGAGCCATCTAATGG+AGG | - | chr6_2:25479609-25479628 | None:intergenic | 40.0% | |
| AGGTAATTGGAGCCATCTAA+TGG | - | chr6_2:25479612-25479631 | None:intergenic | 40.0% | |
| ! | CGTTCTATGATTCGTGCTTT+TGG | + | chr6_2:25479642-25479661 | Msa0913770:intron | 40.0% |
| ATGATTTGAATCGTGCTGCA+TGG | + | chr6_2:25479718-25479737 | Msa0913770:intron | 40.0% | |
| TGATTTGAATCGTGCTGCAT+GGG | + | chr6_2:25479719-25479738 | Msa0913770:intron | 40.0% | |
| ACAAGAGTTTGCGCAATTTG+CGG | - | chr6_2:25479792-25479811 | None:intergenic | 40.0% | |
| ATGAAAACGCCATTGATGCA+TGG | + | chr6_2:25479817-25479836 | Msa0913770:intron | 40.0% | |
| TGAAAACGCCATTGATGCAT+GGG | + | chr6_2:25479818-25479837 | Msa0913770:intron | 40.0% | |
| ! | GCAAGGTTCCAAAACTGTTT+TGG | + | chr6_2:25479917-25479936 | Msa0913770:intron | 40.0% |
| ACTTTGTTAATGGAAGGGAG+TGG | - | chr6_2:25480143-25480162 | None:intergenic | 40.0% | |
| ACAAGGGAAAGAGATTCATC+AGG | - | chr6_2:25480218-25480237 | None:intergenic | 40.0% | |
| GGATTCAGTAGCATTCACAA+GGG | - | chr6_2:25480234-25480253 | None:intergenic | 40.0% | |
| AGGATTCAGTAGCATTCACA+AGG | - | chr6_2:25480235-25480254 | None:intergenic | 40.0% | |
| AATGCTACTGAATCCTCACA+TGG | + | chr6_2:25480239-25480258 | Msa0913770:intron | 40.0% | |
| ! | CTTGCTTCTGAAAATTGGGA+TGG | - | chr6_2:25480376-25480395 | None:intergenic | 40.0% |
| ! | CATCCCAATTTTCAGAAGCA+AGG | + | chr6_2:25480374-25480393 | Msa0913770:intron | 40.0% |
| GATGAAATTGAGACACAACC+AGG | + | chr6_2:25480425-25480444 | Msa0913770:intron | 40.0% | |
| ATATTGGTACCAGGGTTTGA+AGG | - | chr6_2:25480467-25480486 | None:intergenic | 40.0% | |
| CCTGAGAAATATTGGTACCA+GGG | - | chr6_2:25480475-25480494 | None:intergenic | 40.0% | |
| TCCTGAGAAATATTGGTACC+AGG | - | chr6_2:25480476-25480495 | None:intergenic | 40.0% | |
| GTAAAAGGTTGTGAGCTTGA+AGG | - | chr6_2:25480584-25480603 | None:intergenic | 40.0% | |
| ! | TCAAGCTCACAACCTTTTAC+TGG | + | chr6_2:25480584-25480603 | Msa0913770:intron | 40.0% |
| !!! | TCACAACCTTTTACTGGTTC+AGG | + | chr6_2:25480590-25480609 | Msa0913770:intron | 40.0% |
| ACATATATCACAGGTGGCTT+TGG | - | chr6_2:25481164-25481183 | None:intergenic | 40.0% | |
| GTTGAAACTCCCCAACAAAA+TGG | + | chr6_2:25481520-25481539 | Msa0913770:intron | 40.0% | |
| ! | TCTACTCTCCCATTTTGTTG+GGG | - | chr6_2:25481532-25481551 | None:intergenic | 40.0% |
| ! | CTCTACTCTCCCATTTTGTT+GGG | - | chr6_2:25481533-25481552 | None:intergenic | 40.0% |
| ! | TCTCTACTCTCCCATTTTGT+TGG | - | chr6_2:25481534-25481553 | None:intergenic | 40.0% |
| ATGATGCAGGCAGTTTAGAT+TGG | - | chr6_2:25481600-25481619 | None:intergenic | 40.0% | |
| CTAAACTGCCTGCATCATAT+TGG | + | chr6_2:25481602-25481621 | Msa0913770:intron | 40.0% | |
| GCATATGACCAATATGATGC+AGG | - | chr6_2:25481613-25481632 | None:intergenic | 40.0% | |
| GGTGATTTATTGTGAAGGTG+GGG | - | chr6_2:25481676-25481695 | None:intergenic | 40.0% | |
| GATAAGGAAGGATGTGATCA+TGG | - | chr6_2:25481909-25481928 | None:intergenic | 40.0% | |
| AGTAGTGATAGAAGAGGGAT+TGG | - | chr6_2:25481935-25481954 | None:intergenic | 40.0% | |
| TTGCAGAACAAGGAACTGAA+GGG | - | chr6_2:25481972-25481991 | None:intergenic | 40.0% | |
| TATAGGTTCAGGGTCTATGA+AGG | - | chr6_2:25482034-25482053 | None:intergenic | 40.0% | |
| ! | GATTTTCTCAGAACAGGTTG+AGG | - | chr6_2:25482090-25482109 | None:intergenic | 40.0% |
| ! | CTGGATGATTTTCTCAGAAC+AGG | - | chr6_2:25482096-25482115 | None:intergenic | 40.0% |
| !! | TAGTCTTGTAAATGGGAAGG+AGG | - | chr6_2:25482129-25482148 | None:intergenic | 40.0% |
| CTCTTGAAAATACTGGTACC+TGG | + | chr6_2:25482337-25482356 | Msa0913770:intron | 40.0% | |
| AAATACTGGTACCTGGAAAC+TGG | + | chr6_2:25482344-25482363 | Msa0913770:intron | 40.0% | |
| TAGATCCATTTGCACCCTAT+AGG | - | chr6_2:25482393-25482412 | None:intergenic | 40.0% | |
| !! | TTATACTCAGGTTGAGGGTT+TGG | + | chr6_2:25482476-25482495 | Msa0913770:intron | 40.0% |
| CTTTGGCCTCTATCAATCAT+TGG | + | chr6_2:25482556-25482575 | Msa0913770:intron | 40.0% | |
| TCATTGGCACATTCATCAAC+TGG | + | chr6_2:25482572-25482591 | Msa0913770:intron | 40.0% | |
| TACTTGATTAGGTTTGGAGG+TGG | - | chr6_2:25482667-25482686 | None:intergenic | 40.0% | |
| GAACAAAGAATGGTCAGCAT+TGG | - | chr6_2:25482787-25482806 | None:intergenic | 40.0% | |
| ! | CACTGCTTTATTGGTCTATG+TGG | + | chr6_2:25482830-25482849 | Msa0913770:intron | 40.0% |
| GAAGTTGCTCATTCTTCACA+AGG | + | chr6_2:25482966-25482985 | Msa0913770:intron | 40.0% | |
| AGCTTACATGAAGGATCAGA+GGG | - | chr6_2:25483071-25483090 | None:intergenic | 40.0% | |
| AAGCTTACATGAAGGATCAG+AGG | - | chr6_2:25483072-25483091 | None:intergenic | 40.0% | |
| CCTATCAACCTTCTGTATGA+GGG | - | chr6_2:25483128-25483147 | None:intergenic | 40.0% | |
| TTGAAGAAATGTCCTGGTCA+GGG | + | chr6_2:25483269-25483288 | Msa0913770:intron | 40.0% | |
| TTGGTCACTCTCTCATATCT+TGG | + | chr6_2:25483399-25483418 | Msa0913770:intron | 40.0% | |
| TGGTTATCACAATAGAGGAC+AGG | - | chr6_2:25483557-25483576 | None:intergenic | 40.0% | |
| CACTCTGGTTATCACAATAG+AGG | - | chr6_2:25483562-25483581 | None:intergenic | 40.0% | |
| CTAGATGTTTAGTCCTCTCA+TGG | - | chr6_2:25483613-25483632 | None:intergenic | 40.0% | |
| GTTAGAGACAAAGTTCAAGC+AGG | + | chr6_2:25483650-25483669 | Msa0913770:intron | 40.0% | |
| TGCAAGTAACTTCCTTAGCT+TGG | + | chr6_2:25479134-25479153 | Msa0913770:intron | 40.0% | |
| GGGGTTGAAAATCTAGGTAT+TGG | + | chr6_2:25484072-25484091 | Msa0913770:intron | 40.0% | |
| ! | GCTACTTTAAGGATCGAACA+TGG | + | chr6_2:25484102-25484121 | Msa0913770:intron | 40.0% |
| TGTGGCTTCTAATTCTTCTG+AGG | + | chr6_2:25484218-25484237 | Msa0913770:CDS | 40.0% | |
| GGATGGTACTTCTTCAATGT+TGG | - | chr6_2:25484268-25484287 | None:intergenic | 40.0% | |
| TTGTGAAGTGGTAGAGAAGC+TGG | - | chr6_2:25478414-25478433 | None:intergenic | 45.0% | |
| AAGCTATCGAAAGACGATCC+AGG | + | chr6_2:25478536-25478555 | Msa0913770:CDS | 45.0% | |
| AGCTATCGAAAGACGATCCA+GGG | + | chr6_2:25478537-25478556 | Msa0913770:CDS | 45.0% | |
| AAAGACGATCCAGGGATAGA+TGG | + | chr6_2:25478545-25478564 | Msa0913770:CDS | 45.0% | |
| AAGACGATCCAGGGATAGAT+GGG | + | chr6_2:25478546-25478565 | Msa0913770:CDS | 45.0% | |
| ! | TTGTTGTTCCCATCTATCCC+TGG | - | chr6_2:25478557-25478576 | None:intergenic | 45.0% |
| AGCATGTTCCTTCCTATGAG+CGG | - | chr6_2:25478765-25478784 | None:intergenic | 45.0% | |
| GGGGTAACCATAGGGTTATA+AGG | - | chr6_2:25478971-25478990 | None:intergenic | 45.0% | |
| CAGCTTATCAAGCCAAGCTA+AGG | - | chr6_2:25479149-25479168 | None:intergenic | 45.0% | |
| TTCTACGTTCATCCGAGTGA+AGG | + | chr6_2:25479561-25479580 | Msa0913770:intron | 45.0% | |
| ACAGAGTTTGGTCCTTCACT+CGG | - | chr6_2:25479576-25479595 | None:intergenic | 45.0% | |
| GAGATCTTCCCATGCATCAA+TGG | - | chr6_2:25479829-25479848 | None:intergenic | 45.0% | |
| TGATGCATGGGAAGATCTCA+AGG | + | chr6_2:25479830-25479849 | Msa0913770:intron | 45.0% | |
| CATGGGAAGATCTCAAGGAA+AGG | + | chr6_2:25479835-25479854 | Msa0913770:intron | 45.0% | |
| GGGAAGAGTTGAATTCACAC+AGG | + | chr6_2:25479967-25479986 | Msa0913770:intron | 45.0% | |
| CTCATTGCTGCACATCTACA+GGG | - | chr6_2:25480020-25480039 | None:intergenic | 45.0% | |
| TCTCATTGCTGCACATCTAC+AGG | - | chr6_2:25480021-25480040 | None:intergenic | 45.0% | |
| AGGGAAAGAGATTCATCAGG+AGG | - | chr6_2:25480215-25480234 | None:intergenic | 45.0% | |
| ACTGAATCCTCACATGGTAG+AGG | + | chr6_2:25480245-25480264 | Msa0913770:intron | 45.0% | |
| GGGGATATTCTTCTGGATTC+AGG | + | chr6_2:25480282-25480301 | Msa0913770:intron | 45.0% | |
| CAGAAACTACATTGTCTGGG+TGG | - | chr6_2:25480308-25480327 | None:intergenic | 45.0% | |
| CCGCAGAAACTACATTGTCT+GGG | - | chr6_2:25480311-25480330 | None:intergenic | 45.0% | |
| CCCAGACAATGTAGTTTCTG+CGG | + | chr6_2:25480308-25480327 | Msa0913770:intron | 45.0% | |
| ACAACCAGGAAGTAGTAGTG+AGG | + | chr6_2:25480439-25480458 | Msa0913770:intron | 45.0% | |
| CCCTGGTACCAATATTTCTC+AGG | + | chr6_2:25480472-25480491 | Msa0913770:intron | 45.0% | |
| !! | CAATCATCCTCTGGGATTGA+AGG | - | chr6_2:25480934-25480953 | None:intergenic | 45.0% |
| CTTCAATCCCAGAGGATGAT+TGG | + | chr6_2:25480932-25480951 | Msa0913770:intron | 45.0% | |
| ! | ATCCCAGAGGATGATTGGTT+TGG | + | chr6_2:25480937-25480956 | Msa0913770:intron | 45.0% |
| !! | TCCCAGAGGATGATTGGTTT+GGG | + | chr6_2:25480938-25480957 | Msa0913770:intron | 45.0% |
| ACCCAAACCAATCATCCTCT+GGG | - | chr6_2:25480942-25480961 | None:intergenic | 45.0% | |
| TTGTTGGGGAGTTTCAACAC+AGG | - | chr6_2:25481518-25481537 | None:intergenic | 45.0% | |
| TTTATTGTGAAGGTGGGGAG+AGG | - | chr6_2:25481671-25481690 | None:intergenic | 45.0% | |
| TCTATGTGCTTGAAGGGATG+TGG | - | chr6_2:25481767-25481786 | None:intergenic | 45.0% | |
| CTTGCAGAACAAGGAACTGA+AGG | - | chr6_2:25481973-25481992 | None:intergenic | 45.0% | |
| ! | ATATGTGGTTGGCTCAGTGT+GGG | - | chr6_2:25482262-25482281 | None:intergenic | 45.0% |
| CTAGCTTCAGCATATGTGGT+TGG | - | chr6_2:25482273-25482292 | None:intergenic | 45.0% | |
| TGGTAAGTCAACCAGTTTCC+AGG | - | chr6_2:25482358-25482377 | None:intergenic | 45.0% | |
| ACAGTAGTAAGCTTGGCAAC+AGG | - | chr6_2:25482522-25482541 | None:intergenic | 45.0% | |
| CTTACATGGAGATTTGCAGG+AGG | + | chr6_2:25482611-25482630 | Msa0913770:intron | 45.0% | |
| GTTTACATGCTTGTTCCTCC+AGG | + | chr6_2:25482636-25482655 | Msa0913770:intron | 45.0% | |
| TGGAAACAGGTTTAGAGGCA+AGG | - | chr6_2:25483046-25483065 | None:intergenic | 45.0% | |
| ! | TATGAGGGCACATCAGTGTA+AGG | - | chr6_2:25483113-25483132 | None:intergenic | 45.0% |
| ! | CCCTCATACAGAAGGTTGAT+AGG | + | chr6_2:25483125-25483144 | Msa0913770:intron | 45.0% |
| GCCTATCAACCTTCTGTATG+AGG | - | chr6_2:25483129-25483148 | None:intergenic | 45.0% | |
| GCAGAGTAGTGTTTCTCAGT+AGG | - | chr6_2:25483227-25483246 | None:intergenic | 45.0% | |
| CTTGAAGAAATGTCCTGGTC+AGG | + | chr6_2:25483268-25483287 | Msa0913770:intron | 45.0% | |
| TGAAGAAATGTCCTGGTCAG+GGG | + | chr6_2:25483270-25483289 | Msa0913770:intron | 45.0% | |
| TGTATCTAGATCCTCCTCAG+AGG | + | chr6_2:25483442-25483461 | Msa0913770:intron | 45.0% | |
| CTCCTCAGAGGCTGAATATA+GGG | + | chr6_2:25483454-25483473 | Msa0913770:intron | 45.0% | |
| TAGTCCTCTCATGGAACACA+GGG | - | chr6_2:25483604-25483623 | None:intergenic | 45.0% | |
| TTAGTCCTCTCATGGAACAC+AGG | - | chr6_2:25483605-25483624 | None:intergenic | 45.0% | |
| TTGAAAGGCTGAGGAAGCAA+TGG | - | chr6_2:25483734-25483753 | None:intergenic | 45.0% | |
| CAGCTTATCAAGCCAAGCTA+AGG | - | chr6_2:25479149-25479168 | None:intergenic | 45.0% | |
| ACCATCCGATTCTGACTCAT+CGG | + | chr6_2:25484281-25484300 | Msa0913770:CDS | 45.0% | |
| AAGACCCGATGAGTCAGAAT+CGG | - | chr6_2:25484289-25484308 | None:intergenic | 45.0% | |
| GGTAGAGAAGCTGGAGGATT+CGG | - | chr6_2:25478405-25478424 | None:intergenic | 50.0% | |
| TGAAGTGGTAGAGAAGCTGG+AGG | - | chr6_2:25478411-25478430 | None:intergenic | 50.0% | |
| ACACAAGACCGCTCATAGGA+AGG | + | chr6_2:25478754-25478773 | Msa0913770:CDS | 50.0% | |
| AGGTATGATCGCGGTGCTTT+AGG | + | chr6_2:25478836-25478855 | Msa0913770:intron | 50.0% | |
| ! | TAGGTCACTTGGGGTTAGCA+CGG | + | chr6_2:25478925-25478944 | Msa0913770:intron | 50.0% |
| ATGGCTCCAATTACCTCGCA+TGG | + | chr6_2:25479616-25479635 | Msa0913770:intron | 50.0% | |
| ACGACTCCATGCGAGGTAAT+TGG | - | chr6_2:25479625-25479644 | None:intergenic | 50.0% | |
| TCATAGAACGACTCCATGCG+AGG | - | chr6_2:25479632-25479651 | None:intergenic | 50.0% | |
| CTGCACATCTACAGGGATGA+GGG | - | chr6_2:25480013-25480032 | None:intergenic | 50.0% | |
| ACATGGTAGAGGCAGAGGAA+GGG | + | chr6_2:25480256-25480275 | Msa0913770:intron | 50.0% | |
| AGGGGAAGGGGATATTCTTC+TGG | + | chr6_2:25480275-25480294 | Msa0913770:intron | 50.0% | |
| GCCGCAGAAACTACATTGTC+TGG | - | chr6_2:25480312-25480331 | None:intergenic | 50.0% | |
| TACTGGATGTGGAAGCTGCA+GGG | - | chr6_2:25480544-25480563 | None:intergenic | 50.0% | |
| TACAGGACCTTCAATCCCAG+AGG | + | chr6_2:25480924-25480943 | Msa0913770:intron | 50.0% | |
| CACCCAAACCAATCATCCTC+TGG | - | chr6_2:25480943-25480962 | None:intergenic | 50.0% | |
| GGTTTGGGTGAGCAGTTTGA+AGG | + | chr6_2:25480953-25480972 | Msa0913770:intron | 50.0% | |
| ! | TGAATAGAGGGCACAGCTAG+AGG | - | chr6_2:25481277-25481296 | None:intergenic | 50.0% |
| !! | AGGGATTGGCTGGATAAGGA+AGG | - | chr6_2:25481921-25481940 | None:intergenic | 50.0% |
| !! | GAAGAGGGATTGGCTGGATA+AGG | - | chr6_2:25481925-25481944 | None:intergenic | 50.0% |
| ! | GTGATAGAAGAGGGATTGGC+TGG | - | chr6_2:25481931-25481950 | None:intergenic | 50.0% |
| !! | GGTGGTTGACTTGCAGAACA+AGG | - | chr6_2:25481982-25482001 | None:intergenic | 50.0% |
| GTGATAGAAGGAGCAGAAGG+TGG | - | chr6_2:25482000-25482019 | None:intergenic | 50.0% | |
| GGTGTGATAGAAGGAGCAGA+AGG | - | chr6_2:25482003-25482022 | None:intergenic | 50.0% | |
| ! | GAAGCTGGTGGTGTGATAGA+AGG | - | chr6_2:25482012-25482031 | None:intergenic | 50.0% |
| TCAGGGTCTATGAAGGAAGC+TGG | - | chr6_2:25482027-25482046 | None:intergenic | 50.0% | |
| !! | TGAGGAGATGGTGATGGAGA+TGG | - | chr6_2:25482072-25482091 | None:intergenic | 50.0% |
| ! | ACAGGTTGAGGAGATGGTGA+TGG | - | chr6_2:25482078-25482097 | None:intergenic | 50.0% |
| ! | CTCAGAACAGGTTGAGGAGA+TGG | - | chr6_2:25482084-25482103 | None:intergenic | 50.0% |
| GGAAGGAGGATTGACATGTC+TGG | - | chr6_2:25482115-25482134 | None:intergenic | 50.0% | |
| ! | CATATGTGGTTGGCTCAGTG+TGG | - | chr6_2:25482263-25482282 | None:intergenic | 50.0% |
| CACCCAATGTGCAGCCTATA+GGG | + | chr6_2:25482376-25482395 | Msa0913770:intron | 50.0% | |
| CACCCTATAGGCTGCACATT+GGG | - | chr6_2:25482381-25482400 | None:intergenic | 50.0% | |
| TGCAGCCTATAGGGTGCAAA+TGG | + | chr6_2:25482385-25482404 | Msa0913770:intron | 50.0% | |
| ATGGTCTCAAACAGGCAAGC+AGG | + | chr6_2:25482709-25482728 | Msa0913770:intron | 50.0% | |
| TCAAACAGGCAAGCAGGAAG+TGG | + | chr6_2:25482715-25482734 | Msa0913770:intron | 50.0% | |
| TTGGACCTCCTCACTGATAC+AGG | + | chr6_2:25483017-25483036 | Msa0913770:intron | 50.0% | |
| CAAGGTGACCTGTATCAGTG+AGG | - | chr6_2:25483028-25483047 | None:intergenic | 50.0% | |
| GGGTGTGGAAACAGGTTTAG+AGG | - | chr6_2:25483051-25483070 | None:intergenic | 50.0% | |
| ACATGAAGGATCAGAGGGTG+TGG | - | chr6_2:25483066-25483085 | None:intergenic | 50.0% | |
| CTGATGTGCCCTCATACAGA+AGG | + | chr6_2:25483117-25483136 | Msa0913770:intron | 50.0% | |
| TGGCTTCTCAGATGCAGACT+GGG | + | chr6_2:25483328-25483347 | Msa0913770:intron | 50.0% | |
| TTCTCAGATGCAGACTGGGT+AGG | + | chr6_2:25483332-25483351 | Msa0913770:intron | 50.0% | |
| ! | CCTATATTCAGCCTCTGAGG+AGG | - | chr6_2:25483456-25483475 | None:intergenic | 50.0% |
| CCTCCTCAGAGGCTGAATAT+AGG | + | chr6_2:25483453-25483472 | Msa0913770:intron | 50.0% | |
| TGCCCTATATTCAGCCTCTG+AGG | - | chr6_2:25483459-25483478 | None:intergenic | 50.0% | |
| ! | GAGGCTGAATATAGGGCACT+TGG | + | chr6_2:25483461-25483480 | Msa0913770:intron | 50.0% |
| CAGCAACTTGTGAGCTTCAG+TGG | + | chr6_2:25483486-25483505 | Msa0913770:intron | 50.0% | |
| ! | CTGCAATGTGCAAAGCACTC+TGG | - | chr6_2:25483577-25483596 | None:intergenic | 50.0% |
| ATCTACCATCCTCCAGCTTG+TGG | + | chr6_2:25483785-25483804 | Msa0913770:intron | 50.0% | |
| TCTACCATCCTCCAGCTTGT+GGG | + | chr6_2:25483786-25483805 | Msa0913770:intron | 50.0% | |
| TCTAATATCCCCCCACAAGC+TGG | - | chr6_2:25483800-25483819 | None:intergenic | 50.0% | |
| ! | TTGGCAGCGCAGCTACTTTA+AGG | + | chr6_2:25484091-25484110 | Msa0913770:intron | 50.0% |
| CCATCCGATTCTGACTCATC+GGG | + | chr6_2:25484282-25484301 | Msa0913770:CDS | 50.0% | |
| !! | TCTTCTGCACAAGCGTTGGG+AGG | + | chr6_2:25478635-25478654 | Msa0913770:CDS | 55.0% |
| ! | ACACCAGAGCGCTCATAGGA+AGG | + | chr6_2:25478658-25478677 | Msa0913770:CDS | 55.0% |
| TCTCCTTCCTATGAGCGCTC+TGG | - | chr6_2:25478664-25478683 | None:intergenic | 55.0% | |
| !! | TCTACTGCACAAGCGTTGGG+AGG | + | chr6_2:25478731-25478750 | Msa0913770:CDS | 55.0% |
| GAGGACACAAGACCGCTCAT+AGG | + | chr6_2:25478750-25478769 | Msa0913770:CDS | 55.0% | |
| ! | GATCGCGGTGCTTTAGGCTT+AGG | + | chr6_2:25478842-25478861 | Msa0913770:intron | 55.0% |
| GGGCATGTGCAATGAGGCAT+AGG | - | chr6_2:25479993-25480012 | None:intergenic | 55.0% | |
| ! | GGATGAGGGCATGTGCAATG+AGG | - | chr6_2:25479999-25480018 | None:intergenic | 55.0% |
| GCTGCACATCTACAGGGATG+AGG | - | chr6_2:25480014-25480033 | None:intergenic | 55.0% | |
| TCCTCACATGGTAGAGGCAG+AGG | + | chr6_2:25480251-25480270 | Msa0913770:intron | 55.0% | |
| TCCTCTGCCTCTACCATGTG+AGG | - | chr6_2:25480255-25480274 | None:intergenic | 55.0% | |
| CACATGGTAGAGGCAGAGGA+AGG | + | chr6_2:25480255-25480274 | Msa0913770:intron | 55.0% | |
| CATGGTAGAGGCAGAGGAAG+GGG | + | chr6_2:25480257-25480276 | Msa0913770:intron | 55.0% | |
| TAGAGGCAGAGGAAGGGGAA+GGG | + | chr6_2:25480262-25480281 | Msa0913770:intron | 55.0% | |
| GGAGCCTCACTACTACTTCC+TGG | - | chr6_2:25480446-25480465 | None:intergenic | 55.0% | |
| AGTGAGGCTCCTTCAAACCC+TGG | + | chr6_2:25480455-25480474 | Msa0913770:intron | 55.0% | |
| GTACTGGATGTGGAAGCTGC+AGG | - | chr6_2:25480545-25480564 | None:intergenic | 55.0% | |
| GGGTCTATGAAGGAAGCTGG+TGG | - | chr6_2:25482024-25482043 | None:intergenic | 55.0% | |
| TGGCTCAGTGTGGGTAGCAA+TGG | - | chr6_2:25482253-25482272 | None:intergenic | 55.0% | |
| CCTATAGGCTGCACATTGGG+TGG | - | chr6_2:25482378-25482397 | None:intergenic | 55.0% | |
| CCACCCAATGTGCAGCCTAT+AGG | + | chr6_2:25482375-25482394 | Msa0913770:intron | 55.0% | |
| GCACCCTATAGGCTGCACAT+TGG | - | chr6_2:25482382-25482401 | None:intergenic | 55.0% | |
| TTGGAGGTGGTGATACCTGG+AGG | - | chr6_2:25482654-25482673 | None:intergenic | 55.0% | |
| GGTTTGGAGGTGGTGATACC+TGG | - | chr6_2:25482657-25482676 | None:intergenic | 55.0% | |
| GGTGACCTGTATCAGTGAGG+AGG | - | chr6_2:25483025-25483044 | None:intergenic | 55.0% | |
| ! | GGATCAGAGGGTGTGGAAAC+AGG | - | chr6_2:25483059-25483078 | None:intergenic | 55.0% |
| GGAAAGAACAACCCCTGACC+AGG | - | chr6_2:25483284-25483303 | None:intergenic | 55.0% | |
| CTGGCTTCTCAGATGCAGAC+TGG | + | chr6_2:25483327-25483346 | Msa0913770:intron | 55.0% | |
| CCTCTCATGGAACACAGGGT+TGG | - | chr6_2:25483600-25483619 | None:intergenic | 55.0% | |
| CCAACCCTGTGTTCCATGAG+AGG | + | chr6_2:25483597-25483616 | Msa0913770:intron | 55.0% | |
| GATGTTGAGCATGCCCAGCT+TGG | - | chr6_2:25483768-25483787 | None:intergenic | 55.0% | |
| CTACCATCCTCCAGCTTGTG+GGG | + | chr6_2:25483787-25483806 | Msa0913770:intron | 55.0% | |
| TACCATCCTCCAGCTTGTGG+GGG | + | chr6_2:25483788-25483807 | Msa0913770:intron | 55.0% | |
| AATATCCCCCCACAAGCTGG+AGG | - | chr6_2:25483797-25483816 | None:intergenic | 55.0% | |
| CCCGATGAGTCAGAATCGGA+TGG | - | chr6_2:25484285-25484304 | None:intergenic | 55.0% | |
| ! | GAGGACACCAGAGCGCTCAT+AGG | + | chr6_2:25478654-25478673 | Msa0913770:CDS | 60.0% |
| GTAGAGGCAGAGGAAGGGGA+AGG | + | chr6_2:25480261-25480280 | Msa0913770:intron | 60.0% | |
| AGAGGCAGAGGAAGGGGAAG+GGG | + | chr6_2:25480263-25480282 | Msa0913770:intron | 60.0% | |
| TGCAGACTGGGTAGGTTGCC+TGG | + | chr6_2:25483340-25483359 | Msa0913770:intron | 60.0% | |
| ACCATCCTCCAGCTTGTGGG+GGG | + | chr6_2:25483789-25483808 | Msa0913770:intron | 60.0% | |
| TCCCCCCACAAGCTGGAGGA+TGG | - | chr6_2:25483793-25483812 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 25478395 | 25484329 | 25478395 | ID=Msa0913770;Name=Msa0913770 |
| chr6_2 | mRNA | 25478395 | 25484329 | 25478395 | ID=Msa0913770-mRNA-1;Parent=Msa0913770;Name=Msa0913770-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|3|0|228 |
| chr6_2 | exon | 25478395 | 25478837 | 25478395 | ID=Msa0913770-mRNA-1:exon:4922;Parent=Msa0913770-mRNA-1 |
| chr6_2 | exon | 25478928 | 25479002 | 25478928 | ID=Msa0913770-mRNA-1:exon:4923;Parent=Msa0913770-mRNA-1 |
| chr6_2 | exon | 25484161 | 25484329 | 25484161 | ID=Msa0913770-mRNA-1:exon:4924;Parent=Msa0913770-mRNA-1 |
| chr6_2 | CDS | 25478395 | 25478837 | 25478395 | ID=Msa0913770-mRNA-1:cds;Parent=Msa0913770-mRNA-1 |
| chr6_2 | CDS | 25478928 | 25479002 | 25478928 | ID=Msa0913770-mRNA-1:cds;Parent=Msa0913770-mRNA-1 |
| chr6_2 | CDS | 25484161 | 25484329 | 25484161 | ID=Msa0913770-mRNA-1:cds;Parent=Msa0913770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
