Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914470 | XP_024636868.1 | 78.963 | 328 | 65 | 2 | 1 | 328 | 1 | 324 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914470 | sp|Q8L3W1|VRN1_ARATH | 26.829 | 328 | 196 | 12 | 15 | 305 | 6 | 326 | 3.69e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0914470 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914470 | MtrunA17_Chr4g0067431 | 78.963 | 328 | 65 | 2 | 1 | 328 | 1 | 324 | 0.0 | 525 |
| Msa0914470 | MtrunA17_Chr1g0163221 | 62.349 | 332 | 98 | 7 | 1 | 331 | 1 | 306 | 5.94e-127 | 368 |
| Msa0914470 | MtrunA17_Chr6g0467351 | 68.220 | 236 | 65 | 2 | 1 | 236 | 1 | 226 | 1.48e-110 | 321 |
| Msa0914470 | MtrunA17_Chr1g0163061 | 69.811 | 265 | 38 | 1 | 1 | 223 | 1 | 265 | 5.64e-105 | 308 |
| Msa0914470 | MtrunA17_Chr1g0163071 | 29.814 | 322 | 193 | 11 | 31 | 336 | 2 | 306 | 9.48e-40 | 142 |
| Msa0914470 | MtrunA17_Chr6g0467361 | 63.636 | 88 | 32 | 0 | 236 | 323 | 7 | 94 | 2.18e-33 | 119 |
| Msa0914470 | MtrunA17_Chr1g0163131 | 31.410 | 312 | 188 | 11 | 12 | 314 | 15 | 309 | 1.35e-31 | 120 |
| Msa0914470 | MtrunA17_Chr8g0390841 | 28.972 | 321 | 201 | 11 | 13 | 324 | 37 | 339 | 6.23e-31 | 122 |
| Msa0914470 | MtrunA17_Chr3g0103181 | 30.449 | 312 | 166 | 11 | 13 | 315 | 10 | 279 | 4.97e-30 | 115 |
| Msa0914470 | MtrunA17_Chr3g0131891 | 30.769 | 312 | 189 | 8 | 9 | 315 | 13 | 302 | 7.60e-30 | 116 |
| Msa0914470 | MtrunA17_Chr7g0233561 | 30.968 | 310 | 166 | 10 | 13 | 301 | 16 | 298 | 1.77e-29 | 115 |
| Msa0914470 | MtrunA17_Chr1g0163251 | 30.584 | 291 | 169 | 9 | 15 | 303 | 9 | 268 | 2.07e-29 | 116 |
| Msa0914470 | MtrunA17_Chr1g0208771 | 26.667 | 300 | 194 | 10 | 30 | 320 | 12 | 294 | 5.01e-28 | 113 |
| Msa0914470 | MtrunA17_Chr1g0163261 | 27.740 | 292 | 179 | 7 | 15 | 303 | 9 | 271 | 7.36e-28 | 110 |
| Msa0914470 | MtrunA17_Chr3g0103151 | 41.781 | 146 | 76 | 7 | 13 | 152 | 10 | 152 | 3.81e-27 | 104 |
| Msa0914470 | MtrunA17_Chr1g0163181 | 29.333 | 300 | 181 | 10 | 24 | 314 | 14 | 291 | 8.34e-27 | 110 |
| Msa0914470 | MtrunA17_Chr1g0163231 | 26.948 | 308 | 178 | 11 | 15 | 314 | 9 | 277 | 2.44e-24 | 100 |
| Msa0914470 | MtrunA17_Chr3g0103191 | 27.969 | 261 | 155 | 7 | 10 | 268 | 7 | 236 | 1.00e-23 | 98.2 |
| Msa0914470 | MtrunA17_Chr1g0171611 | 25.000 | 304 | 177 | 10 | 15 | 314 | 9 | 265 | 8.21e-23 | 96.7 |
| Msa0914470 | MtrunA17_Chr1g0163101 | 33.533 | 167 | 92 | 5 | 12 | 170 | 14 | 169 | 1.24e-22 | 93.6 |
| Msa0914470 | MtrunA17_Chr1g0163201 | 27.922 | 308 | 152 | 9 | 20 | 301 | 8 | 271 | 5.41e-22 | 95.9 |
| Msa0914470 | MtrunA17_Chr7g0233571 | 45.631 | 103 | 55 | 1 | 13 | 115 | 8 | 109 | 7.34e-22 | 92.4 |
| Msa0914470 | MtrunA17_Chr1g0162161 | 36.735 | 147 | 78 | 6 | 31 | 170 | 4 | 142 | 7.58e-20 | 85.1 |
| Msa0914470 | MtrunA17_Chr1g0163081 | 38.843 | 121 | 63 | 4 | 31 | 144 | 6 | 122 | 9.61e-20 | 84.3 |
| Msa0914470 | MtrunA17_Chr3g0103171 | 27.835 | 291 | 175 | 9 | 30 | 315 | 5 | 265 | 1.28e-19 | 87.0 |
| Msa0914470 | MtrunA17_Chr5g0419201 | 29.936 | 157 | 97 | 3 | 15 | 163 | 16 | 167 | 1.55e-18 | 82.4 |
| Msa0914470 | MtrunA17_Chr7g0233521 | 27.273 | 297 | 168 | 9 | 31 | 315 | 2 | 262 | 2.55e-18 | 84.0 |
| Msa0914470 | MtrunA17_Chr7g0233541 | 26.756 | 299 | 184 | 11 | 31 | 315 | 2 | 279 | 4.43e-18 | 83.6 |
| Msa0914470 | MtrunA17_Chr1g0163121 | 37.398 | 123 | 66 | 5 | 29 | 144 | 9 | 127 | 5.27e-18 | 79.7 |
| Msa0914470 | MtrunA17_Chr7g0233531 | 27.931 | 290 | 175 | 10 | 31 | 315 | 2 | 262 | 2.76e-17 | 80.9 |
| Msa0914470 | MtrunA17_Chr6g0476181 | 39.286 | 112 | 63 | 4 | 31 | 142 | 2 | 108 | 6.00e-17 | 77.4 |
| Msa0914470 | MtrunA17_Chr1g0163191 | 37.838 | 111 | 62 | 3 | 24 | 130 | 14 | 121 | 7.86e-16 | 74.3 |
| Msa0914470 | MtrunA17_Chr3g0077411 | 25.000 | 300 | 160 | 9 | 12 | 301 | 259 | 503 | 1.35e-15 | 77.8 |
| Msa0914470 | MtrunA17_Chr3g0077411 | 31.731 | 104 | 70 | 1 | 14 | 117 | 24 | 126 | 5.47e-12 | 66.6 |
| Msa0914470 | MtrunA17_Chr1g0163241 | 33.588 | 131 | 73 | 4 | 15 | 145 | 15 | 131 | 1.46e-15 | 73.6 |
| Msa0914470 | MtrunA17_Chr3g0077451 | 23.913 | 276 | 146 | 6 | 29 | 303 | 10 | 222 | 3.03e-15 | 74.3 |
| Msa0914470 | MtrunA17_Chr1g0154131 | 25.000 | 308 | 170 | 12 | 26 | 308 | 193 | 464 | 8.59e-15 | 75.1 |
| Msa0914470 | MtrunA17_Chr3g0077461 | 31.395 | 172 | 107 | 4 | 14 | 177 | 236 | 404 | 8.80e-15 | 75.1 |
| Msa0914470 | MtrunA17_Chr1g0163141 | 32.317 | 164 | 85 | 5 | 29 | 170 | 9 | 168 | 2.30e-14 | 70.9 |
| Msa0914470 | MtrunA17_Chr5g0429931 | 25.874 | 286 | 158 | 11 | 30 | 315 | 10 | 241 | 2.31e-14 | 72.0 |
| Msa0914470 | MtrunA17_Chr1g0154151 | 27.036 | 307 | 185 | 10 | 16 | 301 | 13 | 301 | 7.79e-14 | 71.6 |
| Msa0914470 | MtrunA17_Chr1g0154191 | 22.866 | 328 | 209 | 8 | 13 | 301 | 20 | 342 | 6.21e-13 | 68.9 |
| Msa0914470 | MtrunA17_Chr1g0154111 | 25.816 | 337 | 198 | 15 | 16 | 308 | 26 | 354 | 9.05e-13 | 69.3 |
| Msa0914470 | MtrunA17_Chr3g0103201 | 27.200 | 250 | 141 | 9 | 74 | 315 | 4 | 220 | 1.07e-12 | 66.6 |
| Msa0914470 | MtrunA17_Chr1g0154161 | 23.625 | 309 | 175 | 10 | 13 | 301 | 28 | 295 | 1.13e-12 | 68.2 |
| Msa0914470 | MtrunA17_Chr4g0033961 | 32.143 | 140 | 82 | 4 | 15 | 143 | 6 | 143 | 1.97e-12 | 67.8 |
| Msa0914470 | MtrunA17_Chr1g0163161 | 48.611 | 72 | 33 | 3 | 43 | 114 | 1 | 68 | 3.15e-12 | 63.2 |
| Msa0914470 | MtrunA17_Chr1g0154171 | 24.928 | 345 | 206 | 14 | 13 | 321 | 21 | 348 | 9.11e-12 | 65.5 |
| Msa0914470 | MtrunA17_Chr4g0009491 | 32.800 | 125 | 81 | 2 | 2 | 124 | 210 | 333 | 9.44e-12 | 65.9 |
| Msa0914470 | MtrunA17_Chr1g0162441 | 33.000 | 100 | 66 | 1 | 15 | 114 | 7 | 105 | 1.72e-11 | 65.1 |
| Msa0914470 | MtrunA17_Chr1g0154041 | 26.036 | 338 | 200 | 16 | 14 | 308 | 15 | 345 | 2.48e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914470 | AT3G18990.1 | 26.829 | 328 | 196 | 12 | 15 | 305 | 6 | 326 | 3.75e-21 | 93.2 |
| Msa0914470 | AT3G18990.2 | 26.829 | 328 | 196 | 12 | 15 | 305 | 6 | 326 | 7.33e-21 | 92.8 |
| Msa0914470 | AT1G49475.1 | 39.655 | 116 | 68 | 2 | 15 | 130 | 34 | 147 | 2.46e-17 | 79.3 |
| Msa0914470 | AT3G18960.2 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 3.69e-16 | 76.3 |
| Msa0914470 | AT3G18960.1 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 3.92e-16 | 76.6 |
| Msa0914470 | AT4G01580.1 | 31.373 | 102 | 69 | 1 | 15 | 116 | 30 | 130 | 1.07e-14 | 72.0 |
| Msa0914470 | AT3G18960.3 | 34.483 | 87 | 56 | 1 | 30 | 116 | 8 | 93 | 1.17e-11 | 63.2 |
Find 46 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCACAATAATTTAAAATT+TGG | 0.142889 | 6_2:+28682041 | Msa0914470:CDS |
| CTCTTTCAATGTATGTCTTT+TGG | 0.144880 | 6_2:-28681245 | None:intergenic |
| CATCCTGTGCAGATGTTTCT+TGG | 0.182263 | 6_2:-28681907 | None:intergenic |
| AAATAAATTACCTTCAAAAT+AGG | 0.207151 | 6_2:-28682153 | None:intergenic |
| CTCTTTAATGTGATTGTATT+GGG | 0.236526 | 6_2:+28680750 | Msa0914470:CDS |
| GAAGACGGTGATGGAGATTT+TGG | 0.241600 | 6_2:-28680894 | None:intergenic |
| ATTTGCAGATTACTTATCTT+TGG | 0.258145 | 6_2:+28680686 | Msa0914470:CDS |
| TTTGGAAGCCTTAGAGTAAC+TGG | 0.265708 | 6_2:-28680591 | None:intergenic |
| CTTCATCATCGTTAGGTAAA+AGG | 0.269129 | 6_2:+28680871 | Msa0914470:CDS |
| TCTCTTTAATGTGATTGTAT+TGG | 0.347950 | 6_2:+28680749 | Msa0914470:CDS |
| TTTGCAGATTACTTATCTTT+GGG | 0.355592 | 6_2:+28680687 | Msa0914470:CDS |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 6_2:+28680643 | Msa0914470:CDS |
| AATAAATTACCTTCAAAATA+GGG | 0.393629 | 6_2:-28682152 | None:intergenic |
| TAGCCTTCAAGAAGGAAAAC+TGG | 0.409944 | 6_2:+28680075 | Msa0914470:CDS |
| CTTCAGTAGTTTCCTTCAAA+GGG | 0.418492 | 6_2:-28680797 | None:intergenic |
| TGTTTCTTGGCAAATTCAAT+TGG | 0.419212 | 6_2:-28681894 | None:intergenic |
| GGGTAGTTGTGATGATCTTA+AGG | 0.436131 | 6_2:+28681149 | Msa0914470:CDS |
| AGAAATAAAATACCCTTTGA+AGG | 0.452606 | 6_2:+28680785 | Msa0914470:CDS |
| TCTTCAGTAGTTTCCTTCAA+AGG | 0.456168 | 6_2:-28680798 | None:intergenic |
| TATGAAATCTTGCATGTGCT+TGG | 0.460028 | 6_2:-28680986 | None:intergenic |
| CGAGAGAGAAAATAGCAACT+TGG | 0.460403 | 6_2:-28682112 | None:intergenic |
| GAATTTGATCATCGGAGTAT+TGG | 0.472826 | 6_2:+28680022 | Msa0914470:CDS |
| GAGGATCCTTCATCATCGTT+AGG | 0.481958 | 6_2:+28680864 | Msa0914470:CDS |
| ATGTCTTCTCACAAAACCTA+AGG | 0.504643 | 6_2:-28680550 | None:intergenic |
| AATGTACACTAAGTGGTGGT+TGG | 0.538952 | 6_2:+28682006 | Msa0914470:CDS |
| GCACAGGATGGAAGGAAGAA+AGG | 0.547170 | 6_2:+28681920 | Msa0914470:CDS |
| AATAATCAATGTACACTAAG+TGG | 0.549260 | 6_2:+28681999 | Msa0914470:CDS |
| AAACATCTGCACAGGATGGA+AGG | 0.555297 | 6_2:+28681912 | Msa0914470:CDS |
| CTTCAAAGTAGCCTTCAAGA+AGG | 0.558054 | 6_2:+28680067 | Msa0914470:CDS |
| CTTCTCAAGAATTTGATCAT+CGG | 0.561271 | 6_2:+28680014 | Msa0914470:CDS |
| GTATGACAGAAAGTACCCTT+AGG | 0.563021 | 6_2:+28680534 | Msa0914470:intron |
| AATTTATCTAAAGTAAAAGA+TGG | 0.565751 | 6_2:-28682198 | None:intergenic |
| TTGCCAAGAAACATCTGCAC+AGG | 0.566543 | 6_2:+28681904 | Msa0914470:CDS |
| TTTATGCTAAACAAATGCAA+AGG | 0.569119 | 6_2:+28682077 | Msa0914470:CDS |
| GAAACTATAGAAGACGGTGA+TGG | 0.571766 | 6_2:-28680903 | None:intergenic |
| TTGTTGATAAAGACATAACA+TGG | 0.582622 | 6_2:+28681952 | Msa0914470:CDS |
| TGATTGTATTGGGTAAATGC+GGG | 0.584281 | 6_2:+28680760 | Msa0914470:CDS |
| GTGATTGTATTGGGTAAATG+CGG | 0.585829 | 6_2:+28680759 | Msa0914470:CDS |
| TTGGAAGCCTTAGAGTAACT+GGG | 0.604374 | 6_2:-28680590 | None:intergenic |
| TGTCTTCTCACAAAACCTAA+GGG | 0.611258 | 6_2:-28680549 | None:intergenic |
| TTCTTAGAAACTATAGAAGA+CGG | 0.616090 | 6_2:-28680909 | None:intergenic |
| ATACATTGAAAGAGATCACT+TGG | 0.619250 | 6_2:+28681254 | Msa0914470:CDS |
| AACTACTGAAGAATATGAAG+AGG | 0.623349 | 6_2:+28680809 | Msa0914470:CDS |
| CAAGAAACATCTGCACAGGA+TGG | 0.624347 | 6_2:+28681908 | Msa0914470:CDS |
| TTTGTGAGAAGACATTGGCA+AGG | 0.633520 | 6_2:+28680558 | Msa0914470:CDS |
| AATCAATGTACACTAAGTGG+TGG | 0.663380 | 6_2:+28682002 | Msa0914470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCATTTTTTAAATAG+GGG | - | chr6_2:28680280-28680299 | None:intergenic | 10.0% |
| !!! | CAAATTTTCATTTTTTAAAT+AGG | - | chr6_2:28680282-28680301 | None:intergenic | 10.0% |
| !! | CTATTTAAAAAATGAAAATT+TGG | + | chr6_2:28680280-28680299 | Msa0914470:intron | 10.0% |
| !!! | TGACAAATTTTTATTTTTTT+TGG | + | chr6_2:28681294-28681313 | Msa0914470:intron | 10.0% |
| !!! | TTTTTTTTTAAGTAATATAG+TGG | - | chr6_2:28681502-28681521 | None:intergenic | 10.0% |
| !!! | AATTTTCATTTTTTAAATAG+GGG | - | chr6_2:28680280-28680299 | None:intergenic | 10.0% |
| !!! | CAAATTTTCATTTTTTAAAT+AGG | - | chr6_2:28680282-28680301 | None:intergenic | 10.0% |
| !! | CTATTTAAAAAATGAAAATT+TGG | + | chr6_2:28680280-28680299 | Msa0914470:intron | 10.0% |
| !!! | TGACAAATTTTTATTTTTTT+TGG | + | chr6_2:28681294-28681313 | Msa0914470:intron | 10.0% |
| !!! | TTTTTTTTTAAGTAATATAG+TGG | - | chr6_2:28681502-28681521 | None:intergenic | 10.0% |
| !! | AGATTGTTAAAAAAGATAAA+AGG | - | chr6_2:28680115-28680134 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTTTTAAATAGG+GGG | - | chr6_2:28680279-28680298 | None:intergenic | 15.0% |
| !!! | TTTGCCATTTTTTTTTAATA+GGG | + | chr6_2:28680362-28680381 | Msa0914470:intron | 15.0% |
| !! | TAAGAAATAATGTATTAAAG+TGG | - | chr6_2:28681622-28681641 | None:intergenic | 15.0% |
| !!! | CAATTTTATAAATAGTTAAG+TGG | + | chr6_2:28681737-28681756 | Msa0914470:intron | 15.0% |
| !!! | TGGATGATATTTTTTTTTTT+TGG | + | chr6_2:28681757-28681776 | Msa0914470:intron | 15.0% |
| !! | AATAAATTACCTTCAAAATA+GGG | - | chr6_2:28682155-28682174 | None:intergenic | 15.0% |
| !! | AAATAAATTACCTTCAAAAT+AGG | - | chr6_2:28682156-28682175 | None:intergenic | 15.0% |
| !! | AGATTGTTAAAAAAGATAAA+AGG | - | chr6_2:28680115-28680134 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTTTTAAATAGG+GGG | - | chr6_2:28680279-28680298 | None:intergenic | 15.0% |
| !!! | TTTGCCATTTTTTTTTAATA+GGG | + | chr6_2:28680362-28680381 | Msa0914470:intron | 15.0% |
| !! | TAAGAAATAATGTATTAAAG+TGG | - | chr6_2:28681622-28681641 | None:intergenic | 15.0% |
| !!! | CAATTTTATAAATAGTTAAG+TGG | + | chr6_2:28681737-28681756 | Msa0914470:intron | 15.0% |
| !!! | TGGATGATATTTTTTTTTTT+TGG | + | chr6_2:28681757-28681776 | Msa0914470:intron | 15.0% |
| !! | AATAAATTACCTTCAAAATA+GGG | - | chr6_2:28682155-28682174 | None:intergenic | 15.0% |
| !! | AAATAAATTACCTTCAAAAT+AGG | - | chr6_2:28682156-28682175 | None:intergenic | 15.0% |
| !! | TAGATATGAATTGCAAAATT+AGG | + | chr6_2:28680134-28680153 | Msa0914470:intron | 20.0% |
| !! | AGATATGAATTGCAAAATTA+GGG | + | chr6_2:28680135-28680154 | Msa0914470:intron | 20.0% |
| !! | TCATTGGTAAAATATAGTTT+AGG | + | chr6_2:28680165-28680184 | Msa0914470:intron | 20.0% |
| !!! | GAATGAGTATAGTTTTTATT+TGG | + | chr6_2:28680205-28680224 | Msa0914470:intron | 20.0% |
| !! | CTATTAAAAAAAAATGGCAA+AGG | - | chr6_2:28680363-28680382 | None:intergenic | 20.0% |
| !!! | CTTTGCCATTTTTTTTTAAT+AGG | + | chr6_2:28680361-28680380 | Msa0914470:intron | 20.0% |
| !!! | TAGTTCTTTAAAAATTGTTG+AGG | + | chr6_2:28680845-28680864 | Msa0914470:CDS | 20.0% |
| !!! | TGCAAGATTTCATAATTTTA+AGG | + | chr6_2:28680995-28681014 | Msa0914470:CDS | 20.0% |
| !!! | ATTTCATAATTTTAAGGATG+TGG | + | chr6_2:28681001-28681020 | Msa0914470:CDS | 20.0% |
| !!! | CTATTTGTGTCTTATTTTAT+AGG | + | chr6_2:28681076-28681095 | Msa0914470:intron | 20.0% |
| !!! | TGCTGCTTAATTTTTTTTTT+TGG | + | chr6_2:28681102-28681121 | Msa0914470:intron | 20.0% |
| !! | ATTTAGTGAGTTTAAACATT+AGG | + | chr6_2:28681320-28681339 | Msa0914470:intron | 20.0% |
| !! | TAATAATGAAATTGACCAAA+TGG | - | chr6_2:28681405-28681424 | None:intergenic | 20.0% |
| !! | GAATTATGGTATAACTTAAT+TGG | - | chr6_2:28681600-28681619 | None:intergenic | 20.0% |
| !! | AATGTATTAAAGTGGAATTA+TGG | - | chr6_2:28681614-28681633 | None:intergenic | 20.0% |
| !! | AACTCAGAATAAATACAAAA+AGG | - | chr6_2:28681859-28681878 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTATTGTGAGCT+CGG | - | chr6_2:28682040-28682059 | None:intergenic | 20.0% |
| !!! | GCTCACAATAATTTAAAATT+TGG | + | chr6_2:28682041-28682060 | Msa0914470:CDS | 20.0% |
| !! | TAGATATGAATTGCAAAATT+AGG | + | chr6_2:28680134-28680153 | Msa0914470:intron | 20.0% |
| !! | AGATATGAATTGCAAAATTA+GGG | + | chr6_2:28680135-28680154 | Msa0914470:intron | 20.0% |
| !! | TCATTGGTAAAATATAGTTT+AGG | + | chr6_2:28680165-28680184 | Msa0914470:intron | 20.0% |
| !!! | GAATGAGTATAGTTTTTATT+TGG | + | chr6_2:28680205-28680224 | Msa0914470:intron | 20.0% |
| !! | CTATTAAAAAAAAATGGCAA+AGG | - | chr6_2:28680363-28680382 | None:intergenic | 20.0% |
| !!! | CTTTGCCATTTTTTTTTAAT+AGG | + | chr6_2:28680361-28680380 | Msa0914470:intron | 20.0% |
| !!! | TAGTTCTTTAAAAATTGTTG+AGG | + | chr6_2:28680845-28680864 | Msa0914470:CDS | 20.0% |
| !!! | TGCAAGATTTCATAATTTTA+AGG | + | chr6_2:28680995-28681014 | Msa0914470:CDS | 20.0% |
| !!! | ATTTCATAATTTTAAGGATG+TGG | + | chr6_2:28681001-28681020 | Msa0914470:CDS | 20.0% |
| !!! | CTATTTGTGTCTTATTTTAT+AGG | + | chr6_2:28681076-28681095 | Msa0914470:intron | 20.0% |
| !!! | TGCTGCTTAATTTTTTTTTT+TGG | + | chr6_2:28681102-28681121 | Msa0914470:intron | 20.0% |
| !! | ATTTAGTGAGTTTAAACATT+AGG | + | chr6_2:28681320-28681339 | Msa0914470:intron | 20.0% |
| !! | TAATAATGAAATTGACCAAA+TGG | - | chr6_2:28681405-28681424 | None:intergenic | 20.0% |
| !! | GAATTATGGTATAACTTAAT+TGG | - | chr6_2:28681600-28681619 | None:intergenic | 20.0% |
| !! | AATGTATTAAAGTGGAATTA+TGG | - | chr6_2:28681614-28681633 | None:intergenic | 20.0% |
| !! | AACTCAGAATAAATACAAAA+AGG | - | chr6_2:28681859-28681878 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTATTGTGAGCT+CGG | - | chr6_2:28682040-28682059 | None:intergenic | 20.0% |
| !!! | GCTCACAATAATTTAAAATT+TGG | + | chr6_2:28682041-28682060 | Msa0914470:CDS | 20.0% |
| !!! | GAAGAATGATTTTGAAAAAG+TGG | - | chr6_2:28680051-28680070 | None:intergenic | 25.0% |
| ! | AAATTAGGGCTATAAATCAT+TGG | + | chr6_2:28680149-28680168 | Msa0914470:intron | 25.0% |
| !! | CGCAACATTTTATAACTTAT+GGG | - | chr6_2:28680249-28680268 | None:intergenic | 25.0% |
| !! | TCGCAACATTTTATAACTTA+TGG | - | chr6_2:28680250-28680269 | None:intergenic | 25.0% |
| !! | GTTATAAAATGTTGCGATTT+TGG | + | chr6_2:28680253-28680272 | Msa0914470:intron | 25.0% |
| ! | TTAAAAAAAAATGGCAAAGG+TGG | - | chr6_2:28680360-28680379 | None:intergenic | 25.0% |
| ! | TGGTCCCTATTAAAAAAAAA+TGG | - | chr6_2:28680369-28680388 | None:intergenic | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | + | chr6_2:28680643-28680662 | Msa0914470:CDS | 25.0% |
| ! | ATTTGCAGATTACTTATCTT+TGG | + | chr6_2:28680686-28680705 | Msa0914470:CDS | 25.0% |
| ! | TTTGCAGATTACTTATCTTT+GGG | + | chr6_2:28680687-28680706 | Msa0914470:CDS | 25.0% |
| ! | TCTCTTTAATGTGATTGTAT+TGG | + | chr6_2:28680749-28680768 | Msa0914470:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+GGG | + | chr6_2:28680750-28680769 | Msa0914470:CDS | 25.0% |
| ! | AGAAATAAAATACCCTTTGA+AGG | + | chr6_2:28680785-28680804 | Msa0914470:CDS | 25.0% |
| ! | TTCTTAGAAACTATAGAAGA+CGG | - | chr6_2:28680912-28680931 | None:intergenic | 25.0% |
| ! | AGACTTAAGAAATTCTAACT+TGG | + | chr6_2:28681346-28681365 | Msa0914470:intron | 25.0% |
| ! | TTAAGAAATTCTAACTTGGT+TGG | + | chr6_2:28681350-28681369 | Msa0914470:intron | 25.0% |
| ! | CATGACAATTAATCTCATTA+AGG | - | chr6_2:28681546-28681565 | None:intergenic | 25.0% |
| ! | GATTAATTGTCATGTACTAA+CGG | + | chr6_2:28681552-28681571 | Msa0914470:intron | 25.0% |
| ! | AATTCACACACACATATATA+TGG | - | chr6_2:28681809-28681828 | None:intergenic | 25.0% |
| ! | ATAAATACAAAAAGGCCAAA+TGG | - | chr6_2:28681851-28681870 | None:intergenic | 25.0% |
| ! | TTTATTCTGAGTTGTATTAC+AGG | + | chr6_2:28681866-28681885 | Msa0914470:intron | 25.0% |
| !! | TTGTTGATAAAGACATAACA+TGG | + | chr6_2:28681952-28681971 | Msa0914470:CDS | 25.0% |
| ! | AATAATCAATGTACACTAAG+TGG | + | chr6_2:28681999-28682018 | Msa0914470:CDS | 25.0% |
| ! | TTTATGCTAAACAAATGCAA+AGG | + | chr6_2:28682077-28682096 | Msa0914470:CDS | 25.0% |
| !!! | GAAGAATGATTTTGAAAAAG+TGG | - | chr6_2:28680051-28680070 | None:intergenic | 25.0% |
| ! | AAATTAGGGCTATAAATCAT+TGG | + | chr6_2:28680149-28680168 | Msa0914470:intron | 25.0% |
| !! | CGCAACATTTTATAACTTAT+GGG | - | chr6_2:28680249-28680268 | None:intergenic | 25.0% |
| !! | TCGCAACATTTTATAACTTA+TGG | - | chr6_2:28680250-28680269 | None:intergenic | 25.0% |
| !! | GTTATAAAATGTTGCGATTT+TGG | + | chr6_2:28680253-28680272 | Msa0914470:intron | 25.0% |
| ! | TTAAAAAAAAATGGCAAAGG+TGG | - | chr6_2:28680360-28680379 | None:intergenic | 25.0% |
| ! | TGGTCCCTATTAAAAAAAAA+TGG | - | chr6_2:28680369-28680388 | None:intergenic | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | + | chr6_2:28680643-28680662 | Msa0914470:CDS | 25.0% |
| ! | ATTTGCAGATTACTTATCTT+TGG | + | chr6_2:28680686-28680705 | Msa0914470:CDS | 25.0% |
| ! | TTTGCAGATTACTTATCTTT+GGG | + | chr6_2:28680687-28680706 | Msa0914470:CDS | 25.0% |
| ! | TCTCTTTAATGTGATTGTAT+TGG | + | chr6_2:28680749-28680768 | Msa0914470:CDS | 25.0% |
| ! | CTCTTTAATGTGATTGTATT+GGG | + | chr6_2:28680750-28680769 | Msa0914470:CDS | 25.0% |
| ! | AGAAATAAAATACCCTTTGA+AGG | + | chr6_2:28680785-28680804 | Msa0914470:CDS | 25.0% |
| ! | TTCTTAGAAACTATAGAAGA+CGG | - | chr6_2:28680912-28680931 | None:intergenic | 25.0% |
| ! | AGACTTAAGAAATTCTAACT+TGG | + | chr6_2:28681346-28681365 | Msa0914470:intron | 25.0% |
| ! | TTAAGAAATTCTAACTTGGT+TGG | + | chr6_2:28681350-28681369 | Msa0914470:intron | 25.0% |
| ! | CATGACAATTAATCTCATTA+AGG | - | chr6_2:28681546-28681565 | None:intergenic | 25.0% |
| ! | GATTAATTGTCATGTACTAA+CGG | + | chr6_2:28681552-28681571 | Msa0914470:intron | 25.0% |
| ! | AATTCACACACACATATATA+TGG | - | chr6_2:28681809-28681828 | None:intergenic | 25.0% |
| ! | ATAAATACAAAAAGGCCAAA+TGG | - | chr6_2:28681851-28681870 | None:intergenic | 25.0% |
| ! | TTTATTCTGAGTTGTATTAC+AGG | + | chr6_2:28681866-28681885 | Msa0914470:intron | 25.0% |
| !! | TTGTTGATAAAGACATAACA+TGG | + | chr6_2:28681952-28681971 | Msa0914470:CDS | 25.0% |
| ! | AATAATCAATGTACACTAAG+TGG | + | chr6_2:28681999-28682018 | Msa0914470:CDS | 25.0% |
| ! | TTTATGCTAAACAAATGCAA+AGG | + | chr6_2:28682077-28682096 | Msa0914470:CDS | 25.0% |
| CTTCTCAAGAATTTGATCAT+CGG | + | chr6_2:28680014-28680033 | Msa0914470:CDS | 30.0% | |
| ATACTCATTCATCACATTCA+AGG | - | chr6_2:28680195-28680214 | None:intergenic | 30.0% | |
| !!! | TTAGCAATTTTGGGACAAAA+GGG | - | chr6_2:28680307-28680326 | None:intergenic | 30.0% |
| ! | GTTTCAAAATGTTGCGATTT+TGG | - | chr6_2:28680389-28680408 | None:intergenic | 30.0% |
| !!! | TCGCAACATTTTGAAACTTA+AGG | + | chr6_2:28680392-28680411 | Msa0914470:intron | 30.0% |
| !!! | CGCAACATTTTGAAACTTAA+GGG | + | chr6_2:28680393-28680412 | Msa0914470:intron | 30.0% |
| TAAAAAACCCAGTTACTCTA+AGG | + | chr6_2:28680583-28680602 | Msa0914470:CDS | 30.0% | |
| !!! | GACCGAAAAGAAAGTTTTTT+GGG | + | chr6_2:28680617-28680636 | Msa0914470:CDS | 30.0% |
| ! | CTCCCAAAAAACTTTCTTTT+CGG | - | chr6_2:28680622-28680641 | None:intergenic | 30.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr6_2:28680654-28680673 | Msa0914470:CDS | 30.0% |
| AACTACTGAAGAATATGAAG+AGG | + | chr6_2:28680809-28680828 | Msa0914470:CDS | 30.0% | |
| !! | AATTTTAAGGATGTGGACAA+TGG | + | chr6_2:28681008-28681027 | Msa0914470:CDS | 30.0% |
| ! | ATTTCCTCAAATTTTCAGCA+GGG | + | chr6_2:28681127-28681146 | Msa0914470:intron | 30.0% |
| ! | CTCTTTCAATGTATGTCTTT+TGG | - | chr6_2:28681248-28681267 | None:intergenic | 30.0% |
| ATACATTGAAAGAGATCACT+TGG | + | chr6_2:28681254-28681273 | Msa0914470:CDS | 30.0% | |
| TAATGAAATTGACCAAATGG+TGG | - | chr6_2:28681402-28681421 | None:intergenic | 30.0% | |
| !!! | TCACTTTTTATAACGTGAAG+AGG | - | chr6_2:28681471-28681490 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAT+TGG | - | chr6_2:28681897-28681916 | None:intergenic | 30.0% | |
| AGATGGCAATTGAAAAATAG+CGG | - | chr6_2:28682184-28682203 | None:intergenic | 30.0% | |
| CTTCTCAAGAATTTGATCAT+CGG | + | chr6_2:28680014-28680033 | Msa0914470:CDS | 30.0% | |
| ATACTCATTCATCACATTCA+AGG | - | chr6_2:28680195-28680214 | None:intergenic | 30.0% | |
| !!! | TTAGCAATTTTGGGACAAAA+GGG | - | chr6_2:28680307-28680326 | None:intergenic | 30.0% |
| ! | GTTTCAAAATGTTGCGATTT+TGG | - | chr6_2:28680389-28680408 | None:intergenic | 30.0% |
| !!! | TCGCAACATTTTGAAACTTA+AGG | + | chr6_2:28680392-28680411 | Msa0914470:intron | 30.0% |
| !!! | CGCAACATTTTGAAACTTAA+GGG | + | chr6_2:28680393-28680412 | Msa0914470:intron | 30.0% |
| TAAAAAACCCAGTTACTCTA+AGG | + | chr6_2:28680583-28680602 | Msa0914470:CDS | 30.0% | |
| !!! | GACCGAAAAGAAAGTTTTTT+GGG | + | chr6_2:28680617-28680636 | Msa0914470:CDS | 30.0% |
| ! | CTCCCAAAAAACTTTCTTTT+CGG | - | chr6_2:28680622-28680641 | None:intergenic | 30.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr6_2:28680654-28680673 | Msa0914470:CDS | 30.0% |
| AACTACTGAAGAATATGAAG+AGG | + | chr6_2:28680809-28680828 | Msa0914470:CDS | 30.0% | |
| !! | AATTTTAAGGATGTGGACAA+TGG | + | chr6_2:28681008-28681027 | Msa0914470:CDS | 30.0% |
| ! | ATTTCCTCAAATTTTCAGCA+GGG | + | chr6_2:28681127-28681146 | Msa0914470:intron | 30.0% |
| ! | CTCTTTCAATGTATGTCTTT+TGG | - | chr6_2:28681248-28681267 | None:intergenic | 30.0% |
| ATACATTGAAAGAGATCACT+TGG | + | chr6_2:28681254-28681273 | Msa0914470:CDS | 30.0% | |
| TAATGAAATTGACCAAATGG+TGG | - | chr6_2:28681402-28681421 | None:intergenic | 30.0% | |
| !!! | TCACTTTTTATAACGTGAAG+AGG | - | chr6_2:28681471-28681490 | None:intergenic | 30.0% |
| TGTTTCTTGGCAAATTCAAT+TGG | - | chr6_2:28681897-28681916 | None:intergenic | 30.0% | |
| AGATGGCAATTGAAAAATAG+CGG | - | chr6_2:28682184-28682203 | None:intergenic | 30.0% | |
| GAATTTGATCATCGGAGTAT+TGG | + | chr6_2:28680022-28680041 | Msa0914470:CDS | 35.0% | |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr6_2:28680081-28680100 | None:intergenic | 35.0% |
| !!! | TAGCAATTTTGGGACAAAAG+GGG | - | chr6_2:28680306-28680325 | None:intergenic | 35.0% |
| !!! | CTTAGCAATTTTGGGACAAA+AGG | - | chr6_2:28680308-28680327 | None:intergenic | 35.0% |
| ! | GACGTCTTCTTAGCAATTTT+GGG | - | chr6_2:28680316-28680335 | None:intergenic | 35.0% |
| ! | TGACGTCTTCTTAGCAATTT+TGG | - | chr6_2:28680317-28680336 | None:intergenic | 35.0% |
| TGTCTTCTCACAAAACCTAA+GGG | - | chr6_2:28680552-28680571 | None:intergenic | 35.0% | |
| ATGTCTTCTCACAAAACCTA+AGG | - | chr6_2:28680553-28680572 | None:intergenic | 35.0% | |
| !! | TAGGTTTTGTGAGAAGACAT+TGG | + | chr6_2:28680553-28680572 | Msa0914470:CDS | 35.0% |
| ! | ACTTTCTTTTCGGTCGTATT+TGG | - | chr6_2:28680612-28680631 | None:intergenic | 35.0% |
| !!! | CGACCGAAAAGAAAGTTTTT+TGG | + | chr6_2:28680616-28680635 | Msa0914470:CDS | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr6_2:28680658-28680677 | Msa0914470:CDS | 35.0% |
| GTGATTGTATTGGGTAAATG+CGG | + | chr6_2:28680759-28680778 | Msa0914470:CDS | 35.0% | |
| TGATTGTATTGGGTAAATGC+GGG | + | chr6_2:28680760-28680779 | Msa0914470:CDS | 35.0% | |
| CTTCAGTAGTTTCCTTCAAA+GGG | - | chr6_2:28680800-28680819 | None:intergenic | 35.0% | |
| TCTTCAGTAGTTTCCTTCAA+AGG | - | chr6_2:28680801-28680820 | None:intergenic | 35.0% | |
| ! | CTTTTACCTAACGATGATGA+AGG | - | chr6_2:28680873-28680892 | None:intergenic | 35.0% |
| CTTCATCATCGTTAGGTAAA+AGG | + | chr6_2:28680871-28680890 | Msa0914470:CDS | 35.0% | |
| TATGAAATCTTGCATGTGCT+TGG | - | chr6_2:28680989-28681008 | None:intergenic | 35.0% | |
| ! | GATTTCCTCAAATTTTCAGC+AGG | + | chr6_2:28681126-28681145 | Msa0914470:intron | 35.0% |
| ! | TTTCCTCAAATTTTCAGCAG+GGG | + | chr6_2:28681128-28681147 | Msa0914470:intron | 35.0% |
| ! | ATGTCTTTTGGATCACACAA+AGG | - | chr6_2:28681236-28681255 | None:intergenic | 35.0% |
| TCTGCATGATGTATTGTGAT+TGG | + | chr6_2:28681659-28681678 | Msa0914470:intron | 35.0% | |
| GCTAGAAAATTGCATCCATT+TGG | + | chr6_2:28681833-28681852 | Msa0914470:intron | 35.0% | |
| AATCAATGTACACTAAGTGG+TGG | + | chr6_2:28682002-28682021 | Msa0914470:CDS | 35.0% | |
| !!! | TGCTATTTTCTCTCTCGAAA+AGG | + | chr6_2:28682118-28682137 | Msa0914470:CDS | 35.0% |
| GAATTTGATCATCGGAGTAT+TGG | + | chr6_2:28680022-28680041 | Msa0914470:CDS | 35.0% | |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr6_2:28680081-28680100 | None:intergenic | 35.0% |
| !!! | TAGCAATTTTGGGACAAAAG+GGG | - | chr6_2:28680306-28680325 | None:intergenic | 35.0% |
| !!! | CTTAGCAATTTTGGGACAAA+AGG | - | chr6_2:28680308-28680327 | None:intergenic | 35.0% |
| ! | GACGTCTTCTTAGCAATTTT+GGG | - | chr6_2:28680316-28680335 | None:intergenic | 35.0% |
| ! | TGACGTCTTCTTAGCAATTT+TGG | - | chr6_2:28680317-28680336 | None:intergenic | 35.0% |
| TGTCTTCTCACAAAACCTAA+GGG | - | chr6_2:28680552-28680571 | None:intergenic | 35.0% | |
| ATGTCTTCTCACAAAACCTA+AGG | - | chr6_2:28680553-28680572 | None:intergenic | 35.0% | |
| !! | TAGGTTTTGTGAGAAGACAT+TGG | + | chr6_2:28680553-28680572 | Msa0914470:CDS | 35.0% |
| ! | ACTTTCTTTTCGGTCGTATT+TGG | - | chr6_2:28680612-28680631 | None:intergenic | 35.0% |
| !!! | CGACCGAAAAGAAAGTTTTT+TGG | + | chr6_2:28680616-28680635 | Msa0914470:CDS | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr6_2:28680658-28680677 | Msa0914470:CDS | 35.0% |
| GTGATTGTATTGGGTAAATG+CGG | + | chr6_2:28680759-28680778 | Msa0914470:CDS | 35.0% | |
| TGATTGTATTGGGTAAATGC+GGG | + | chr6_2:28680760-28680779 | Msa0914470:CDS | 35.0% | |
| CTTCAGTAGTTTCCTTCAAA+GGG | - | chr6_2:28680800-28680819 | None:intergenic | 35.0% | |
| TCTTCAGTAGTTTCCTTCAA+AGG | - | chr6_2:28680801-28680820 | None:intergenic | 35.0% | |
| ! | CTTTTACCTAACGATGATGA+AGG | - | chr6_2:28680873-28680892 | None:intergenic | 35.0% |
| CTTCATCATCGTTAGGTAAA+AGG | + | chr6_2:28680871-28680890 | Msa0914470:CDS | 35.0% | |
| TATGAAATCTTGCATGTGCT+TGG | - | chr6_2:28680989-28681008 | None:intergenic | 35.0% | |
| ! | GATTTCCTCAAATTTTCAGC+AGG | + | chr6_2:28681126-28681145 | Msa0914470:intron | 35.0% |
| ! | TTTCCTCAAATTTTCAGCAG+GGG | + | chr6_2:28681128-28681147 | Msa0914470:intron | 35.0% |
| ! | ATGTCTTTTGGATCACACAA+AGG | - | chr6_2:28681236-28681255 | None:intergenic | 35.0% |
| TCTGCATGATGTATTGTGAT+TGG | + | chr6_2:28681659-28681678 | Msa0914470:intron | 35.0% | |
| GCTAGAAAATTGCATCCATT+TGG | + | chr6_2:28681833-28681852 | Msa0914470:intron | 35.0% | |
| AATCAATGTACACTAAGTGG+TGG | + | chr6_2:28682002-28682021 | Msa0914470:CDS | 35.0% | |
| !!! | TGCTATTTTCTCTCTCGAAA+AGG | + | chr6_2:28682118-28682137 | Msa0914470:CDS | 35.0% |
| CTTCAAAGTAGCCTTCAAGA+AGG | + | chr6_2:28680067-28680086 | Msa0914470:CDS | 40.0% | |
| TAGCCTTCAAGAAGGAAAAC+TGG | + | chr6_2:28680075-28680094 | Msa0914470:CDS | 40.0% | |
| CTCATTCATCACATTCAAGG+AGG | - | chr6_2:28680192-28680211 | None:intergenic | 40.0% | |
| !! | GTATGACAGAAAGTACCCTT+AGG | + | chr6_2:28680534-28680553 | Msa0914470:intron | 40.0% |
| TTTGTGAGAAGACATTGGCA+AGG | + | chr6_2:28680558-28680577 | Msa0914470:CDS | 40.0% | |
| TTGGAAGCCTTAGAGTAACT+GGG | - | chr6_2:28680593-28680612 | None:intergenic | 40.0% | |
| TTTGGAAGCCTTAGAGTAAC+TGG | - | chr6_2:28680594-28680613 | None:intergenic | 40.0% | |
| GAAACTATAGAAGACGGTGA+TGG | - | chr6_2:28680906-28680925 | None:intergenic | 40.0% | |
| ! | TTCCTCAAATTTTCAGCAGG+GGG | + | chr6_2:28681129-28681148 | Msa0914470:intron | 40.0% |
| GGGTAGTTGTGATGATCTTA+AGG | + | chr6_2:28681149-28681168 | Msa0914470:CDS | 40.0% | |
| AATGTACACTAAGTGGTGGT+TGG | + | chr6_2:28682006-28682025 | Msa0914470:CDS | 40.0% | |
| CGAGAGAGAAAATAGCAACT+TGG | - | chr6_2:28682115-28682134 | None:intergenic | 40.0% | |
| CTTCAAAGTAGCCTTCAAGA+AGG | + | chr6_2:28680067-28680086 | Msa0914470:CDS | 40.0% | |
| TAGCCTTCAAGAAGGAAAAC+TGG | + | chr6_2:28680075-28680094 | Msa0914470:CDS | 40.0% | |
| CTCATTCATCACATTCAAGG+AGG | - | chr6_2:28680192-28680211 | None:intergenic | 40.0% | |
| !! | GTATGACAGAAAGTACCCTT+AGG | + | chr6_2:28680534-28680553 | Msa0914470:intron | 40.0% |
| TTTGTGAGAAGACATTGGCA+AGG | + | chr6_2:28680558-28680577 | Msa0914470:CDS | 40.0% | |
| TTGGAAGCCTTAGAGTAACT+GGG | - | chr6_2:28680593-28680612 | None:intergenic | 40.0% | |
| TTTGGAAGCCTTAGAGTAAC+TGG | - | chr6_2:28680594-28680613 | None:intergenic | 40.0% | |
| GAAACTATAGAAGACGGTGA+TGG | - | chr6_2:28680906-28680925 | None:intergenic | 40.0% | |
| ! | TTCCTCAAATTTTCAGCAGG+GGG | + | chr6_2:28681129-28681148 | Msa0914470:intron | 40.0% |
| GGGTAGTTGTGATGATCTTA+AGG | + | chr6_2:28681149-28681168 | Msa0914470:CDS | 40.0% | |
| AATGTACACTAAGTGGTGGT+TGG | + | chr6_2:28682006-28682025 | Msa0914470:CDS | 40.0% | |
| CGAGAGAGAAAATAGCAACT+TGG | - | chr6_2:28682115-28682134 | None:intergenic | 40.0% | |
| ACGTCACGTGTCCCAAAAAA+AGG | + | chr6_2:28680331-28680350 | Msa0914470:intron | 45.0% | |
| CGTCACGTGTCCCAAAAAAA+GGG | + | chr6_2:28680332-28680351 | Msa0914470:intron | 45.0% | |
| GTCACGTGTCCCAAAAAAAG+GGG | + | chr6_2:28680333-28680352 | Msa0914470:intron | 45.0% | |
| TCACGTGTCCCAAAAAAAGG+GGG | + | chr6_2:28680334-28680353 | Msa0914470:intron | 45.0% | |
| !!! | AAAGGTGGCCCCCTTTTTTT+GGG | - | chr6_2:28680345-28680364 | None:intergenic | 45.0% |
| GAGGATCCTTCATCATCGTT+AGG | + | chr6_2:28680864-28680883 | Msa0914470:CDS | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr6_2:28680897-28680916 | None:intergenic | 45.0% |
| TACCCCCTGCTGAAAATTTG+AGG | - | chr6_2:28681134-28681153 | None:intergenic | 45.0% | |
| CAGGAGATAGGAGTTTCTTG+GGG | - | chr6_2:28681379-28681398 | None:intergenic | 45.0% | |
| GCAGGAGATAGGAGTTTCTT+GGG | - | chr6_2:28681380-28681399 | None:intergenic | 45.0% | |
| GAAATTGACCAAATGGTGGC+AGG | - | chr6_2:28681398-28681417 | None:intergenic | 45.0% | |
| TTGCCAAGAAACATCTGCAC+AGG | + | chr6_2:28681904-28681923 | Msa0914470:CDS | 45.0% | |
| CATCCTGTGCAGATGTTTCT+TGG | - | chr6_2:28681910-28681929 | None:intergenic | 45.0% | |
| CAAGAAACATCTGCACAGGA+TGG | + | chr6_2:28681908-28681927 | Msa0914470:CDS | 45.0% | |
| AAACATCTGCACAGGATGGA+AGG | + | chr6_2:28681912-28681931 | Msa0914470:CDS | 45.0% | |
| !! | ACGAGCACTCCCTATTTTGA+AGG | + | chr6_2:28682143-28682162 | Msa0914470:CDS | 45.0% |
| ACGTCACGTGTCCCAAAAAA+AGG | + | chr6_2:28680331-28680350 | Msa0914470:intron | 45.0% | |
| CGTCACGTGTCCCAAAAAAA+GGG | + | chr6_2:28680332-28680351 | Msa0914470:intron | 45.0% | |
| GTCACGTGTCCCAAAAAAAG+GGG | + | chr6_2:28680333-28680352 | Msa0914470:intron | 45.0% | |
| TCACGTGTCCCAAAAAAAGG+GGG | + | chr6_2:28680334-28680353 | Msa0914470:intron | 45.0% | |
| !!! | AAAGGTGGCCCCCTTTTTTT+GGG | - | chr6_2:28680345-28680364 | None:intergenic | 45.0% |
| GAGGATCCTTCATCATCGTT+AGG | + | chr6_2:28680864-28680883 | Msa0914470:CDS | 45.0% | |
| !!! | GAAGACGGTGATGGAGATTT+TGG | - | chr6_2:28680897-28680916 | None:intergenic | 45.0% |
| TACCCCCTGCTGAAAATTTG+AGG | - | chr6_2:28681134-28681153 | None:intergenic | 45.0% | |
| CAGGAGATAGGAGTTTCTTG+GGG | - | chr6_2:28681379-28681398 | None:intergenic | 45.0% | |
| GCAGGAGATAGGAGTTTCTT+GGG | - | chr6_2:28681380-28681399 | None:intergenic | 45.0% | |
| GAAATTGACCAAATGGTGGC+AGG | - | chr6_2:28681398-28681417 | None:intergenic | 45.0% | |
| TTGCCAAGAAACATCTGCAC+AGG | + | chr6_2:28681904-28681923 | Msa0914470:CDS | 45.0% | |
| CATCCTGTGCAGATGTTTCT+TGG | - | chr6_2:28681910-28681929 | None:intergenic | 45.0% | |
| CAAGAAACATCTGCACAGGA+TGG | + | chr6_2:28681908-28681927 | Msa0914470:CDS | 45.0% | |
| AAACATCTGCACAGGATGGA+AGG | + | chr6_2:28681912-28681931 | Msa0914470:CDS | 45.0% | |
| !! | ACGAGCACTCCCTATTTTGA+AGG | + | chr6_2:28682143-28682162 | Msa0914470:CDS | 45.0% |
| !!! | AAATTTTCATTTTTTAAATA+GGG | - | chr6_2:28680281-28680300 | None:intergenic | 5.0% |
| !!! | AAATTTTCATTTTTTAAATA+GGG | - | chr6_2:28680281-28680300 | None:intergenic | 5.0% |
| !!! | CAAAGGTGGCCCCCTTTTTT+TGG | - | chr6_2:28680346-28680365 | None:intergenic | 50.0% |
| GGCAGGAGATAGGAGTTTCT+TGG | - | chr6_2:28681381-28681400 | None:intergenic | 50.0% | |
| TCCTATCTCCTGCCACCATT+TGG | + | chr6_2:28681387-28681406 | Msa0914470:intron | 50.0% | |
| ACCAAATGGTGGCAGGAGAT+AGG | - | chr6_2:28681391-28681410 | None:intergenic | 50.0% | |
| GCACAGGATGGAAGGAAGAA+AGG | + | chr6_2:28681920-28681939 | Msa0914470:CDS | 50.0% | |
| !!! | CAAAGGTGGCCCCCTTTTTT+TGG | - | chr6_2:28680346-28680365 | None:intergenic | 50.0% |
| GGCAGGAGATAGGAGTTTCT+TGG | - | chr6_2:28681381-28681400 | None:intergenic | 50.0% | |
| TCCTATCTCCTGCCACCATT+TGG | + | chr6_2:28681387-28681406 | Msa0914470:intron | 50.0% | |
| ACCAAATGGTGGCAGGAGAT+AGG | - | chr6_2:28681391-28681410 | None:intergenic | 50.0% | |
| GCACAGGATGGAAGGAAGAA+AGG | + | chr6_2:28681920-28681939 | Msa0914470:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 28680010 | 28682217 | 28680010 | ID=Msa0914470;Name=Msa0914470 |
| chr6_2 | mRNA | 28680010 | 28682217 | 28680010 | ID=Msa0914470-mRNA-1;Parent=Msa0914470;Name=Msa0914470-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|4|0|344 |
| chr6_2 | exon | 28680010 | 28680096 | 28680010 | ID=Msa0914470-mRNA-1:exon:5216;Parent=Msa0914470-mRNA-1 |
| chr6_2 | exon | 28680543 | 28681029 | 28680543 | ID=Msa0914470-mRNA-1:exon:5217;Parent=Msa0914470-mRNA-1 |
| chr6_2 | exon | 28681145 | 28681275 | 28681145 | ID=Msa0914470-mRNA-1:exon:5218;Parent=Msa0914470-mRNA-1 |
| chr6_2 | exon | 28681888 | 28682217 | 28681888 | ID=Msa0914470-mRNA-1:exon:5219;Parent=Msa0914470-mRNA-1 |
| chr6_2 | CDS | 28680010 | 28680096 | 28680010 | ID=Msa0914470-mRNA-1:cds;Parent=Msa0914470-mRNA-1 |
| chr6_2 | CDS | 28680543 | 28681029 | 28680543 | ID=Msa0914470-mRNA-1:cds;Parent=Msa0914470-mRNA-1 |
| chr6_2 | CDS | 28681145 | 28681275 | 28681145 | ID=Msa0914470-mRNA-1:cds;Parent=Msa0914470-mRNA-1 |
| chr6_2 | CDS | 28681888 | 28682217 | 28681888 | ID=Msa0914470-mRNA-1:cds;Parent=Msa0914470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
