AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0914930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914930 MtrunA17_Chr6g0470151 81.768 362 56 1 1 362 1 352 3.94e-159 458
Msa0914930 MtrunA17_Chr2g0289181 47.210 233 123 0 327 559 1 233 5.50e-71 227
Msa0914930 MtrunA17_Chr6g0470161 80.000 125 20 1 435 559 1 120 2.28e-61 198
Msa0914930 MtrunA17_Chr7g0266611 49.697 165 82 1 395 559 2 165 1.10e-34 128
Msa0914930 MtrunA17_Chr8g0366921 49.462 186 77 5 1 180 1 175 9.93e-28 113
Msa0914930 MtrunA17_Chr1g0202461 40.800 125 63 2 291 415 222 335 1.95e-26 111
Msa0914930 MtrunA17_Chr8g0368721 40.950 337 158 7 1 321 1 312 7.72e-25 105
Msa0914930 MtrunA17_Chr8g0348311 46.939 98 49 2 317 414 134 228 4.51e-23 100
Msa0914930 MtrunA17_Chr7g0248691 43.243 111 54 2 312 414 118 227 2.73e-22 98.2
Msa0914930 MtrunA17_Chr7g0270051 45.977 87 47 0 333 419 46 132 8.56e-20 89.4
Msa0914930 MtrunA17_Chr8g0387501 43.810 105 49 3 341 439 130 230 3.50e-19 87.8
Msa0914930 MtrunA17_Chr7g0266621 36.795 337 162 7 1 321 1 302 4.34e-19 88.2
Msa0914930 MtrunA17_Chr2g0293481 49.351 77 38 1 341 417 268 343 1.07e-18 89.4
Msa0914930 MtrunA17_Chr7g0238921 42.453 106 49 3 292 397 87 180 1.92e-17 83.6
Msa0914930 MtrunA17_Chr2g0319961 52.381 63 30 0 341 403 81 143 8.47e-16 77.8
Msa0914930 MtrunA17_Chr5g0401821 43.529 85 45 1 316 397 172 256 9.06e-16 77.8
Msa0914930 MtrunA17_Chr8g0379461 49.206 63 32 0 341 403 77 139 1.08e-15 77.0
Msa0914930 MtrunA17_Chr2g0293901 46.154 182 82 5 1 181 1 167 1.22e-15 75.9
Msa0914930 MtrunA17_Chr2g0284321 51.667 60 29 0 341 400 36 95 1.43e-15 75.9
Msa0914930 MtrunA17_Chr1g0184691 43.902 82 43 1 321 399 271 352 4.41e-15 77.0
Msa0914930 MtrunA17_Chr4g0071521 42.353 85 46 1 316 397 218 302 4.50e-15 76.6
Msa0914930 MtrunA17_Chr8g0387981 39.130 92 50 2 310 395 98 189 9.19e-15 76.3
Msa0914930 MtrunA17_Chr4g0053281 50.000 62 31 0 341 402 267 328 1.21e-14 75.5
Msa0914930 MtrunA17_Chr7g0228941 44.118 68 38 0 334 401 46 113 2.02e-14 70.1
Msa0914930 MtrunA17_Chr3g0139021 38.889 90 54 1 309 397 282 371 2.34e-14 75.1
Msa0914930 MtrunA17_Chr4g0042831 38.710 93 52 2 338 426 276 367 5.50e-14 73.9
Msa0914930 MtrunA17_Chr7g0218081 42.424 66 37 1 338 403 408 472 9.45e-14 73.9
Msa0914930 MtrunA17_Chr1g0147881 33.684 95 58 1 320 409 237 331 1.53e-13 72.0
Msa0914930 MtrunA17_Chr5g0418191 42.029 69 39 1 338 406 318 385 3.59e-13 71.6
Msa0914930 MtrunA17_Chr2g0302391 45.000 60 33 0 341 400 212 271 9.64e-13 70.5
Msa0914930 MtrunA17_Chr4g0074001 26.633 199 133 7 291 483 313 504 1.55e-12 70.1
Msa0914930 MtrunA17_Chr4g0051881 47.541 61 31 1 340 400 178 237 1.64e-12 68.9
Msa0914930 MtrunA17_Chr7g0263531 48.333 60 30 1 341 400 362 420 1.82e-12 69.7
Msa0914930 MtrunA17_Chr5g0443131 48.387 62 31 1 340 401 157 217 2.36e-12 68.2
Msa0914930 MtrunA17_Chr7g0249311 44.928 69 36 2 332 400 171 237 5.48e-12 68.6
Msa0914930 MtrunA17_Chr7g0249311 40.909 66 38 1 340 405 392 456 1.24e-11 67.4
Msa0914930 MtrunA17_Chr2g0288871 33.981 103 64 3 299 400 266 365 7.75e-12 67.8
Msa0914930 MtrunA17_Chr3g0129321 37.681 69 40 3 337 404 115 181 9.68e-12 64.7
Msa0914930 MtrunA17_Chr1g0194481 41.429 70 40 1 340 409 158 226 1.13e-11 66.2
Msa0914930 MtrunA17_Chr3g0079691 48.387 62 30 2 339 400 279 338 1.30e-11 67.4
Msa0914930 MtrunA17_Chr3g0079691 37.500 64 39 1 340 403 495 557 4.52e-11 65.9
Msa0914930 MtrunA17_Chr4g0001361 40.964 83 48 1 335 416 157 239 1.49e-11 65.9
Msa0914930 MtrunA17_Chr3g0136961 39.286 84 50 1 315 397 112 195 1.67e-11 65.5
Msa0914930 MtrunA17_Chr3g0099641 37.349 83 49 2 318 400 232 311 1.70e-11 66.6
Msa0914930 MtrunA17_Chr7g0243891 47.059 68 34 2 333 400 209 274 2.00e-11 66.6
Msa0914930 MtrunA17_Chr7g0249301 40.625 64 37 1 340 403 292 354 2.94e-11 65.5
Msa0914930 MtrunA17_Chr5g0445311 37.313 67 41 1 340 406 364 429 4.09e-11 65.5
Msa0914930 MtrunA17_Chr3g0101131 37.313 67 41 1 340 406 415 480 4.38e-11 65.5
Msa0914930 MtrunA17_Chr1g0150281 41.667 72 42 0 341 412 141 212 4.55e-11 63.9
Msa0914930 MtrunA17_Chr8g0347251 41.573 89 46 2 313 395 105 193 5.89e-11 64.3
Msa0914930 MtrunA17_Chr1g0150271 33.884 121 72 2 306 421 65 182 7.11e-11 62.8
Msa0914930 MtrunA17_Chr5g0447701 34.513 113 60 3 304 403 203 314 7.13e-11 64.3
Msa0914930 MtrunA17_Chr2g0294231 43.548 62 34 1 340 401 203 263 8.56e-11 63.9
Msa0914930 MtrunA17_Chr2g0333851 42.188 64 37 0 338 401 167 230 9.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914930 AT5G52830.1 51.020 98 46 2 318 415 144 239 9.90e-25 105
Msa0914930 AT4G01250.1 41.176 119 62 3 317 430 107 222 2.13e-22 98.2
Msa0914930 AT4G23550.1 46.512 86 45 1 332 417 132 216 1.45e-19 90.1
Msa0914930 AT1G30650.1 39.655 116 65 2 294 409 175 285 9.86e-18 86.3
Msa0914930 AT5G45050.4 31.579 152 102 2 258 409 960 1109 1.00e-17 87.8
Msa0914930 AT5G45050.1 31.579 152 102 2 258 409 1099 1248 1.19e-17 87.4
Msa0914930 AT5G45050.2 31.579 152 102 2 258 409 1071 1220 1.37e-17 87.4
Msa0914930 AT2G34830.1 52.174 69 32 1 341 409 216 283 1.77e-17 85.5
Msa0914930 AT2G34830.2 52.174 69 32 1 341 409 225 292 1.89e-17 85.5
Msa0914930 AT5G28650.1 40.217 92 52 1 311 399 230 321 6.15e-17 82.8
Msa0914930 AT3G04670.1 35.593 118 62 3 285 399 215 321 7.13e-17 82.4
Msa0914930 AT2G23320.1 42.353 85 46 1 316 397 213 297 3.12e-16 80.5
Msa0914930 AT4G24240.1 39.785 93 53 1 308 397 246 338 5.05e-15 77.0
Msa0914930 AT3G58710.1 48.485 66 34 0 341 406 72 137 7.23e-15 75.5
Msa0914930 AT3G58710.2 48.485 66 34 0 341 406 71 136 7.53e-15 75.5
Msa0914930 AT1G29280.1 50.000 60 30 0 341 400 75 134 1.87e-14 73.9
Msa0914930 AT4G31550.2 37.000 100 60 1 309 405 211 310 2.23e-14 74.7
Msa0914930 AT4G31550.1 37.634 93 55 1 316 405 219 311 3.49e-14 74.3
Msa0914930 AT2G24570.1 37.931 87 51 1 316 399 216 302 7.12e-14 73.2
Msa0914930 AT2G03340.1 42.029 69 39 1 338 406 413 480 3.14e-13 72.8
Msa0914930 AT2G30590.1 37.931 87 51 1 316 399 286 372 5.22e-13 71.2
Msa0914930 AT5G45260.1 30.128 156 91 6 254 403 1130 1273 6.14e-13 72.4
Msa0914930 AT2G04880.1 46.032 63 33 1 341 403 308 369 9.88e-13 70.9
Msa0914930 AT2G04880.2 46.032 63 33 1 341 403 284 345 1.02e-12 70.9
Msa0914930 AT1G80840.1 32.836 134 79 3 340 471 146 270 1.04e-12 69.7
Msa0914930 AT5G43290.1 39.726 73 43 1 325 397 99 170 1.73e-12 68.6
Msa0914930 AT3G01080.2 41.270 63 36 1 338 400 342 403 2.94e-12 69.3
Msa0914930 AT3G01080.1 41.270 63 36 1 338 400 304 365 2.97e-12 69.3
Msa0914930 AT2G47260.1 39.773 88 51 2 313 400 148 233 4.16e-12 68.2
Msa0914930 AT4G31800.2 44.000 75 39 1 340 411 111 185 4.94e-12 66.6
Msa0914930 AT5G07100.1 45.455 66 35 1 335 400 112 176 8.43e-12 67.0
Msa0914930 AT4G18170.1 36.634 101 58 2 302 397 129 228 8.56e-12 67.0
Msa0914930 AT2G37260.1 38.272 81 45 2 321 397 326 405 1.03e-11 67.4
Msa0914930 AT5G07100.2 45.455 66 35 1 335 400 19 83 1.04e-11 65.1
Msa0914930 AT5G07100.4 45.455 66 35 1 335 400 19 83 1.04e-11 65.1
Msa0914930 AT5G07100.5 45.455 66 35 1 335 400 19 83 1.04e-11 65.1
Msa0914930 AT5G07100.3 45.455 66 35 1 335 400 19 83 1.04e-11 65.1
Msa0914930 AT1G29860.1 45.161 62 33 1 340 401 136 196 1.11e-11 66.2
Msa0914930 AT2G37260.3 38.272 81 45 2 321 397 246 325 1.18e-11 67.0
Msa0914930 AT2G37260.2 38.272 81 45 2 321 397 244 323 1.19e-11 67.0
Msa0914930 AT4G31800.1 44.000 75 39 1 340 411 176 250 1.20e-11 66.6
Msa0914930 AT2G25000.2 47.541 61 32 0 340 400 103 163 1.26e-11 65.1
Msa0914930 AT2G25000.4 47.541 61 32 0 340 400 103 163 1.26e-11 65.1
Msa0914930 AT2G25000.3 47.541 61 32 0 340 400 125 185 1.40e-11 65.5
Msa0914930 AT1G13960.1 41.270 63 36 1 338 400 407 468 1.73e-11 67.0
Msa0914930 AT2G46400.1 39.785 93 49 2 310 395 69 161 1.77e-11 65.9
Msa0914930 AT1G13960.2 41.270 63 36 1 338 400 254 315 1.91e-11 66.2
Msa0914930 AT4G26640.7 39.744 78 44 3 338 414 169 244 3.41e-11 66.2
Msa0914930 AT4G26640.2 39.744 78 44 3 338 414 209 284 3.62e-11 66.2
Msa0914930 AT1G80590.1 45.570 79 40 2 341 417 86 163 3.90e-11 63.9
Msa0914930 AT2G25000.1 47.541 61 32 0 340 400 146 206 3.96e-11 64.3
Msa0914930 AT4G26640.1 39.744 78 44 3 338 414 137 212 4.01e-11 65.9
Msa0914930 AT4G30935.1 39.683 63 37 1 341 403 332 393 4.11e-11 65.9
Msa0914930 AT4G11070.2 38.235 102 57 2 300 395 65 166 4.25e-11 64.3
Msa0914930 AT4G26640.5 39.744 78 44 3 338 414 33 108 4.61e-11 65.1
Msa0914930 AT4G26640.6 39.744 78 44 3 338 414 33 108 4.61e-11 65.1
Msa0914930 AT4G26640.4 39.744 78 44 3 338 414 33 108 4.61e-11 65.1
Msa0914930 AT4G26640.3 39.744 78 44 3 338 414 33 108 4.61e-11 65.1
Msa0914930 AT2G40750.1 47.541 61 30 1 337 395 149 209 5.70e-11 64.7
Msa0914930 AT4G11070.1 38.235 102 57 2 300 395 97 198 5.81e-11 64.3
Msa0914930 AT4G23810.1 41.176 85 44 2 317 395 131 215 5.99e-11 64.3
Msa0914930 AT1G69310.4 44.068 59 32 1 340 398 147 204 7.28e-11 63.9
Msa0914930 AT1G69310.2 44.068 59 32 1 340 398 147 204 7.28e-11 63.9
Msa0914930 AT1G69310.1 44.068 59 32 1 340 398 147 204 7.28e-11 63.9
Msa0914930 AT5G46350.1 39.706 68 40 1 340 407 183 249 8.12e-11 63.9
Msa0914930 AT2G21900.1 43.548 62 34 1 340 401 109 169 9.82e-11 62.0

Find 144 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCAGGAAACAAACTTAT+TGG 0.153110 6_2:+30109506 Msa0914930:CDS
TTTCTCTAGCAGCAGGTAAA+TGG 0.191301 6_2:-30109370 None:intergenic
TACCCGCTGTTGGAAATTTC+AGG 0.250971 6_2:+30109213 Msa0914930:CDS
TTGAGGAGATATGACGTTAT+TGG 0.276825 6_2:-30107047 None:intergenic
GGTGGGAGTATTGAAATTAT+TGG 0.287618 6_2:-30107473 None:intergenic
TGGTGGTCGTGGACAAAATA+TGG 0.290490 6_2:+30108041 Msa0914930:CDS
TAGTCTTTGATGACTTGTTC+TGG 0.291346 6_2:-30109187 None:intergenic
TGTGATTGATTGAGCTTTCT+TGG 0.296315 6_2:-30107775 None:intergenic
TATGTTAGAGGATTTCTTAT+TGG 0.311118 6_2:+30109574 Msa0914930:CDS
TTGGGATAGTGGTGGTAGTT+GGG 0.331508 6_2:-30107216 None:intergenic
AACATTATCACTAGTGTTCA+TGG 0.339452 6_2:+30107628 Msa0914930:CDS
GTGATTGATTGAGCTTTCTT+GGG 0.341470 6_2:-30107774 None:intergenic
CTAAAACCATCAAAGTAAAA+TGG 0.342350 6_2:-30107079 None:intergenic
TTGGTAGGGGTGGGGTTAAC+AGG 0.344695 6_2:-30107454 None:intergenic
TAGTGGTGGTTGAAGGGGTT+TGG 0.351715 6_2:-30107279 None:intergenic
AGTGGTGGTAGTTGGGATGG+GGG 0.353665 6_2:-30107209 None:intergenic
TAGTGGTGGTAGTTGGGATG+GGG 0.353957 6_2:-30107210 None:intergenic
GAACCCATCTTTGAAATGTT+TGG 0.367325 6_2:-30109242 None:intergenic
CAAATAAGCTTTCAGAAGAT+TGG 0.368905 6_2:+30108021 Msa0914930:CDS
AGTCTTTGATGACTTGTTCT+GGG 0.370924 6_2:-30109186 None:intergenic
TGTAATGAGGGTTGGGATAG+TGG 0.371786 6_2:-30107227 None:intergenic
GGGTTTGGATAATAGTGATT+GGG 0.385706 6_2:-30107264 None:intergenic
GTTGGGATAGTGGTGGTAGT+TGG 0.390091 6_2:-30107217 None:intergenic
CCGGGAATAGTGGTGGTTGA+AGG 0.395917 6_2:-30107286 None:intergenic
CCTTCAACCACCACTATTCC+CGG 0.405389 6_2:+30107286 Msa0914930:CDS
AATTAACAACAAGGTAACTT+TGG 0.407679 6_2:+30107983 Msa0914930:CDS
GTCAAGTTGGTGGTGGTGCT+AGG 0.408314 6_2:-30107604 None:intergenic
ATGGAGAGAGGTGGTGGGAT+TGG 0.408785 6_2:-30107185 None:intergenic
AATTACCCAACACCAGATCT+AGG 0.412137 6_2:+30107803 Msa0914930:CDS
ATAGTGGTGGTAGTTGGGAT+GGG 0.414168 6_2:-30107211 None:intergenic
TGAAATTATTGGTAGGGGTG+GGG 0.414985 6_2:-30107462 None:intergenic
GTGATTCACCGGAGTAAACC+TGG 0.417652 6_2:-30109475 None:intergenic
GAGGTGGTGGTGACAATGAT+TGG 0.418719 6_2:-30107019 None:intergenic
CAAAACATAATTCAAGAATC+AGG 0.420705 6_2:+30107854 Msa0914930:CDS
CAACAAGAAATGCAATCAAA+TGG 0.425635 6_2:+30107397 Msa0914930:CDS
AAGCATGACTGATATGTTAG+AGG 0.427454 6_2:+30109562 Msa0914930:CDS
GACGTTATTGGTGGTGGAGG+TGG 0.428662 6_2:-30107035 None:intergenic
GTGGTGGTGCTAGGGCTAAT+AGG 0.429133 6_2:-30107595 None:intergenic
GTCACCAAACATTTCAAAGA+TGG 0.429508 6_2:+30109238 Msa0914930:CDS
GAATCACAAATCCTTCCTTC+AGG 0.431729 6_2:+30109491 Msa0914930:CDS
TCCAATGGACATTGACGATT+GGG 0.439428 6_2:+30106910 None:intergenic
CACAACAAAAGTGTCCTCTT+TGG 0.441667 6_2:-30109099 None:intergenic
AAGGCGTTGGTAGTGGTCAT+GGG 0.441960 6_2:-30107529 None:intergenic
ATTCCCGGCCACATAACATT+TGG 0.443207 6_2:+30107301 Msa0914930:CDS
TTGAAATTATTGGTAGGGGT+GGG 0.444762 6_2:-30107463 None:intergenic
AACACTTGACTGTTATTGTT+TGG 0.445737 6_2:-30107712 None:intergenic
TGAAATGGTAGGATATTGAT+TGG 0.447083 6_2:-30107653 None:intergenic
AAGGAACAGGGTTATCGTCT+TGG 0.451273 6_2:-30107108 None:intergenic
TTCTCTAGCAGCAGGTAAAT+GGG 0.451842 6_2:-30109369 None:intergenic
ACTTGAATATTCCTGCTCTC+TGG 0.454557 6_2:-30109296 None:intergenic
GATAGTGGTGGTAGTTGGGA+TGG 0.455456 6_2:-30107212 None:intergenic
ATAAGTTCAGTTTCTGAATG+AGG 0.455899 6_2:-30109341 None:intergenic
GTTATTGGTGGTGGAGGTGG+TGG 0.460419 6_2:-30107032 None:intergenic
AGTGATAATGTTAGTCAAGT+TGG 0.462717 6_2:-30107617 None:intergenic
TAAGGCGTTGGTAGTGGTCA+TGG 0.465082 6_2:-30107530 None:intergenic
AGGAACAGGGTTATCGTCTT+GGG 0.469719 6_2:-30107107 None:intergenic
GCAGGTAAATGGAACTCTAT+TGG 0.471063 6_2:+30109155 Msa0914930:CDS
GGGGTTTGGATAATAGTGAT+TGG 0.471326 6_2:-30107265 None:intergenic
ATTAGGTAAAATCCTAGATC+TGG 0.473232 6_2:-30107815 None:intergenic
ATGAAGTGGTTGTTGTAATG+AGG 0.474053 6_2:-30107240 None:intergenic
GGAGTATTGAAATTATTGGT+AGG 0.476280 6_2:-30107469 None:intergenic
CTCCAATGGACATTGACGAT+TGG 0.476413 6_2:+30106909 None:intergenic
ACCTGGGCATTGCTACTCAT+TGG 0.480044 6_2:-30109458 None:intergenic
TGGTTGTTGTAATGAGGGTT+GGG 0.482879 6_2:-30107234 None:intergenic
ATAGAGTTCCATTTACCTGC+TGG 0.487185 6_2:-30109152 None:intergenic
GAGTATTGAAATTATTGGTA+GGG 0.491396 6_2:-30107468 None:intergenic
GATTCAATTTCTCTAGCAGC+AGG 0.497334 6_2:-30109377 None:intergenic
AGATATGACGTTATTGGTGG+TGG 0.499087 6_2:-30107041 None:intergenic
TTGGTGTTTGAGATGGAGAT+GGG 0.501391 6_2:-30107000 None:intergenic
AACAAGAAATGCAATCAAAT+GGG 0.503558 6_2:+30107398 Msa0914930:CDS
TCAAGTTGGTGGTGGTGCTA+GGG 0.503913 6_2:-30107603 None:intergenic
TGTTATGTGGCCGGGAATAG+TGG 0.508241 6_2:-30107296 None:intergenic
TAAGTTCAGTTTCTGAATGA+GGG 0.508550 6_2:-30109340 None:intergenic
GTTAGCTAAGGCGTTGGTAG+TGG 0.511992 6_2:-30107536 None:intergenic
AGCTTTCTTGGGGATTGTTG+TGG 0.514180 6_2:-30107763 None:intergenic
CGGGAATAGTGGTGGTTGAA+GGG 0.514280 6_2:-30107285 None:intergenic
TCTTGTTGTTCGATAAGTGT+TGG 0.517204 6_2:-30107382 None:intergenic
TAAGTTTGTTTCCTGAAGGA+AGG 0.517251 6_2:-30109502 None:intergenic
GGTGGAAGGAGTAGTGAGGG+TGG 0.517876 6_2:-30107491 None:intergenic
GTGGTTGTTGTAATGAGGGT+TGG 0.523332 6_2:-30107235 None:intergenic
AGTATTGAAATTATTGGTAG+GGG 0.523845 6_2:-30107467 None:intergenic
AAAATCCTAGATCTGGTGTT+GGG 0.524682 6_2:-30107808 None:intergenic
CTAATAGGTGCAGTGGTGGT+CGG 0.525114 6_2:-30107580 None:intergenic
AAGACTAGATTACCCGCTGT+TGG 0.528458 6_2:+30109203 Msa0914930:CDS
TCACCAAACATTTCAAAGAT+GGG 0.532829 6_2:+30109239 Msa0914930:CDS
ATTGAAATTATTGGTAGGGG+TGG 0.533722 6_2:-30107464 None:intergenic
CCAATAAGTTTGTTTCCTGA+AGG 0.534237 6_2:-30109506 None:intergenic
GTACCAAATGTTATGTGGCC+GGG 0.534649 6_2:-30107304 None:intergenic
GAGTATTGCATACTCTGAAA+TGG 0.535792 6_2:-30107668 None:intergenic
AGGAGATATGACGTTATTGG+TGG 0.536868 6_2:-30107044 None:intergenic
TCCCAATCGTCAATGTCCAT+TGG 0.539210 6_2:-30106911 None:intergenic
AGGAAGGATTTGTGATTCAC+CGG 0.548075 6_2:-30109486 None:intergenic
GGTTTGGATAATAGTGATTG+GGG 0.549958 6_2:-30107263 None:intergenic
TGAAGTGGTTGTTGTAATGA+GGG 0.550704 6_2:-30107239 None:intergenic
AAACCATCAAAGTAAAATGG+TGG 0.550726 6_2:-30107076 None:intergenic
ATCACTAACACTAGTGCTCA+TGG 0.555133 6_2:+30107328 Msa0914930:CDS
ATAAGCTTTCAGAAGATTGG+TGG 0.556521 6_2:+30108024 Msa0914930:CDS
AGCTTTGTTGTTATTGACAA+AGG 0.557392 6_2:-30106942 None:intergenic
GGGAATAGTGGTGGTTGAAG+GGG 0.558417 6_2:-30107284 None:intergenic
TAAAATCCTAGATCTGGTGT+TGG 0.562048 6_2:-30107809 None:intergenic
TATGACGTTATTGGTGGTGG+AGG 0.562705 6_2:-30107038 None:intergenic
ACAATGATTGGTGTTTGAGA+TGG 0.562764 6_2:-30107007 None:intergenic
TCTAACATATCAGTCATGCT+TGG 0.562921 6_2:-30109560 None:intergenic
AGTTGTTGTGGGGTTAGCTA+AGG 0.564800 6_2:-30107548 None:intergenic
TGATTGATTGAGCTTTCTTG+GGG 0.565498 6_2:-30107773 None:intergenic
GTAATTCTAGTATGGGTGGA+AGG 0.566336 6_2:-30107505 None:intergenic
GCCAATGAGTAGCAATGCCC+AGG 0.566515 6_2:+30109457 Msa0914930:CDS
AAAAGAGGCGGGGTTAGTAA+AGG 0.569673 6_2:-30106969 None:intergenic
GGGGCATGGAGAGAGGTGGT+GGG 0.569845 6_2:-30107190 None:intergenic
CAGGGTTATCGTCTTGGGCA+AGG 0.570064 6_2:-30107102 None:intergenic
ATGTCGATCATCCAGAGAGC+AGG 0.571282 6_2:+30109285 Msa0914930:CDS
TTTCAGAAGATTGGTGGTCG+TGG 0.572428 6_2:+30108030 Msa0914930:CDS
TGTACCAAATGTTATGTGGC+CGG 0.574015 6_2:-30107305 None:intergenic
AATAGTGATTGGGGATGAAG+TGG 0.575835 6_2:-30107254 None:intergenic
ATTGGTGTTTGAGATGGAGA+TGG 0.575849 6_2:-30107001 None:intergenic
AGCAATGCCCAGGTTTACTC+CGG 0.575866 6_2:+30109467 Msa0914930:CDS
ATGTGAAAAGACCTTGGATG+TGG 0.577521 6_2:-30108086 None:intergenic
GTGGAAGGAGTAGTGAGGGT+GGG 0.580092 6_2:-30107490 None:intergenic
AGGCGTTGGTAGTGGTCATG+GGG 0.582833 6_2:-30107528 None:intergenic
AACCATCAAAGTAAAATGGT+GGG 0.584704 6_2:-30107075 None:intergenic
TATGGGTGGAAGGAGTAGTG+AGG 0.591730 6_2:-30107495 None:intergenic
CTTTGATGACTTGTTCTGGG+AGG 0.593215 6_2:-30109183 None:intergenic
TGGTGTTTGAGATGGAGATG+GGG 0.596571 6_2:-30106999 None:intergenic
TGATTGTACCAAATGTTATG+TGG 0.596955 6_2:-30107309 None:intergenic
AAAGCTTATTTGTTCTCACA+TGG 0.598586 6_2:-30108010 None:intergenic
GGTAAATGGAACTCTATTGG+TGG 0.600259 6_2:+30109158 Msa0914930:CDS
ATGGGTGGAAGGAGTAGTGA+GGG 0.602721 6_2:-30107494 None:intergenic
GACCTGAAATTTCCAACAGC+GGG 0.604025 6_2:-30109215 None:intergenic
ATTGCATACTCTGAAATGGT+AGG 0.607029 6_2:-30107664 None:intergenic
GCTAGGGCTAATAGGTGCAG+TGG 0.611408 6_2:-30107587 None:intergenic
TGATTCACCGGAGTAAACCT+GGG 0.612077 6_2:-30109474 None:intergenic
TGTGGGGTTAGCTAAGGCGT+TGG 0.612971 6_2:-30107542 None:intergenic
GAAATAGAAAACCATCATTG+AGG 0.620026 6_2:-30109607 None:intergenic
TTAGCGGGTCCCCACATCCA+AGG 0.623038 6_2:+30108075 Msa0914930:CDS
TGTGAAAAGACCTTGGATGT+GGG 0.630725 6_2:-30108085 None:intergenic
GATAATGTTAGTCAAGTTGG+TGG 0.636625 6_2:-30107614 None:intergenic
GTGAAAAGACCTTGGATGTG+GGG 0.637723 6_2:-30108084 None:intergenic
AGGGCTAATAGGTGCAGTGG+TGG 0.638903 6_2:-30107584 None:intergenic
AATGTTAGTCAAGTTGGTGG+TGG 0.642962 6_2:-30107611 None:intergenic
ATAGAAAACCATCATTGAGG+TGG 0.645904 6_2:-30109604 None:intergenic
GGCGTTGGTAGTGGTCATGG+GGG 0.697585 6_2:-30107527 None:intergenic
CGACCTGAAATTTCCAACAG+CGG 0.704425 6_2:-30109216 None:intergenic
AATGAGGGTTGGGATAGTGG+TGG 0.711606 6_2:-30107224 None:intergenic
TATGTGGCCGGGAATAGTGG+TGG 0.724076 6_2:-30107293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATAAATTTTAT+GGG - chr6_2:30108525-30108544 None:intergenic 0.0%
!!! TTTAAAATAAATAAATTTTA+TGG - chr6_2:30108526-30108545 None:intergenic 0.0%
!!! TATCAAAATTAATGTATTTT+TGG + chr6_2:30108382-30108401 Msa0914930:intron 10.0%
!!! TAAATATTTTACATATAACA+AGG + chr6_2:30108595-30108614 Msa0914930:intron 10.0%
!! ACTAAAATTATATGTTTATT+GGG - chr6_2:30108939-30108958 None:intergenic 10.0%
!! TACTAAAATTATATGTTTAT+TGG - chr6_2:30108940-30108959 None:intergenic 10.0%
!!! ATATGTAAAAGTTAGATTTT+TGG - chr6_2:30108112-30108131 None:intergenic 15.0%
!!! CTAATGTTTAAATATGTTTT+TGG - chr6_2:30108738-30108757 None:intergenic 15.0%
!! AAATTAATCTTATCAAGTAT+TGG - chr6_2:30108796-30108815 None:intergenic 15.0%
!! AATACTTGATAAGATTAATT+TGG + chr6_2:30108795-30108814 Msa0914930:intron 15.0%
!!! TGAAATCATTTTGTTTAAGT+GGG - chr6_2:30107138-30107157 None:intergenic 20.0%
!!! ATGAAATCATTTTGTTTAAG+TGG - chr6_2:30107139-30107158 None:intergenic 20.0%
!! TTACAGAAAAATTAACAACA+AGG + chr6_2:30107974-30107993 Msa0914930:intron 20.0%
!!! TTTTTGGTTTAAGTACAAAA+TGG + chr6_2:30108398-30108417 Msa0914930:intron 20.0%
!!! TAACAATCAAAACTTTTACA+TGG - chr6_2:30108443-30108462 None:intergenic 20.0%
!!! ATTTTAGTCGATCATAAATA+AGG - chr6_2:30108575-30108594 None:intergenic 20.0%
!! AATTTATTCGTAGGATAATT+TGG - chr6_2:30108622-30108641 None:intergenic 20.0%
!! TTCACTTTGTATTTATGATA+AGG + chr6_2:30108761-30108780 Msa0914930:intron 20.0%
!! TCACTTTGTATTTATGATAA+GGG + chr6_2:30108762-30108781 Msa0914930:intron 20.0%
!! TGTAACATTTATGTAAAACT+TGG + chr6_2:30108913-30108932 Msa0914930:intron 20.0%
!! ATTAAAGTGATACAATTTAC+AGG + chr6_2:30108973-30108992 Msa0914930:intron 20.0%
!!! AAAACAAGTTTTCAACATTA+GGG - chr6_2:30109406-30109425 None:intergenic 20.0%
! CTAAAACCATCAAAGTAAAA+TGG - chr6_2:30107082-30107101 None:intergenic 25.0%
!!! GAAATCATTTTGTTTAAGTG+GGG - chr6_2:30107137-30107156 None:intergenic 25.0%
! AACAAGAAATGCAATCAAAT+GGG + chr6_2:30107398-30107417 Msa0914930:CDS 25.0%
!! AGTATTGAAATTATTGGTAG+GGG - chr6_2:30107470-30107489 None:intergenic 25.0%
!!! GAGTATTGAAATTATTGGTA+GGG - chr6_2:30107471-30107490 None:intergenic 25.0%
! CAAAACATAATTCAAGAATC+AGG + chr6_2:30107854-30107873 Msa0914930:CDS 25.0%
! AATTAACAACAAGGTAACTT+TGG + chr6_2:30107983-30108002 Msa0914930:CDS 25.0%
! TATGGACAAAAAAACATTAG+CGG + chr6_2:30108059-30108078 Msa0914930:CDS 25.0%
! CAACAAGTAGAAAAAACAAA+AGG - chr6_2:30108490-30108509 None:intergenic 25.0%
!!! TTTCTACTTGTTGTTTGTTT+TGG + chr6_2:30108497-30108516 Msa0914930:intron 25.0%
!! AAACAAGTTTTCAACATTAG+GGG - chr6_2:30109405-30109424 None:intergenic 25.0%
!! GAAAACAAGTTTTCAACATT+AGG - chr6_2:30109407-30109426 None:intergenic 25.0%
! TATGTTAGAGGATTTCTTAT+TGG + chr6_2:30109574-30109593 Msa0914930:CDS 25.0%
!! AGCTTTGTTGTTATTGACAA+AGG - chr6_2:30106945-30106964 None:intergenic 30.0%
!! TAAAATGGTGGGATATTTTG+AGG - chr6_2:30107067-30107086 None:intergenic 30.0%
AACCATCAAAGTAAAATGGT+GGG - chr6_2:30107078-30107097 None:intergenic 30.0%
AAACCATCAAAGTAAAATGG+TGG - chr6_2:30107079-30107098 None:intergenic 30.0%
!! TTTTGTTTAAGTGGGGAAAA+AGG - chr6_2:30107130-30107149 None:intergenic 30.0%
TGATTGTACCAAATGTTATG+TGG - chr6_2:30107312-30107331 None:intergenic 30.0%
!! AAGTGTTGGACAATCAAAAA+AGG - chr6_2:30107371-30107390 None:intergenic 30.0%
CAACAAGAAATGCAATCAAA+TGG + chr6_2:30107397-30107416 Msa0914930:CDS 30.0%
!! GGAGTATTGAAATTATTGGT+AGG - chr6_2:30107472-30107491 None:intergenic 30.0%
! AGTGATAATGTTAGTCAAGT+TGG - chr6_2:30107620-30107639 None:intergenic 30.0%
AACATTATCACTAGTGTTCA+TGG + chr6_2:30107628-30107647 Msa0914930:CDS 30.0%
TGAAATGGTAGGATATTGAT+TGG - chr6_2:30107656-30107675 None:intergenic 30.0%
AACACTTGACTGTTATTGTT+TGG - chr6_2:30107715-30107734 None:intergenic 30.0%
ATTAGGTAAAATCCTAGATC+TGG - chr6_2:30107818-30107837 None:intergenic 30.0%
! GCTTTTTGTGAATCTGAATT+AGG - chr6_2:30107835-30107854 None:intergenic 30.0%
AAAGCTTATTTGTTCTCACA+TGG - chr6_2:30108013-30108032 None:intergenic 30.0%
CAAATAAGCTTTCAGAAGAT+TGG + chr6_2:30108021-30108040 Msa0914930:CDS 30.0%
ATGGACAAAAAAACATTAGC+GGG + chr6_2:30108060-30108079 Msa0914930:CDS 30.0%
TCTAATACAACATGATACCT+AGG + chr6_2:30108170-30108189 Msa0914930:intron 30.0%
CTAATACAACATGATACCTA+GGG + chr6_2:30108171-30108190 Msa0914930:intron 30.0%
!!! ATACCTAGGGTTTTAAATAG+TGG + chr6_2:30108184-30108203 Msa0914930:intron 30.0%
TCTCTGCAAAATTTATTCGT+AGG - chr6_2:30108631-30108650 None:intergenic 30.0%
!!! CATCTTTGTTTTCTATCTGT+TGG - chr6_2:30108654-30108673 None:intergenic 30.0%
ACAAATATATCACTCGTTTC+AGG + chr6_2:30108875-30108894 Msa0914930:intron 30.0%
CAAATATATCACTCGTTTCA+GGG + chr6_2:30108876-30108895 Msa0914930:intron 30.0%
! CAATCTATGAATGATTTTGC+AGG + chr6_2:30109012-30109031 Msa0914930:intron 30.0%
TCACCAAACATTTCAAAGAT+GGG + chr6_2:30109239-30109258 Msa0914930:CDS 30.0%
TAAGTTCAGTTTCTGAATGA+GGG - chr6_2:30109343-30109362 None:intergenic 30.0%
ATAAGTTCAGTTTCTGAATG+AGG - chr6_2:30109344-30109363 None:intergenic 30.0%
GAAATAGAAAACCATCATTG+AGG - chr6_2:30109610-30109629 None:intergenic 30.0%
AGATGGGGTTTCAAAAAAAG+AGG - chr6_2:30106987-30107006 None:intergenic 35.0%
! ACAATGATTGGTGTTTGAGA+TGG - chr6_2:30107010-30107029 None:intergenic 35.0%
TTGAGGAGATATGACGTTAT+TGG - chr6_2:30107050-30107069 None:intergenic 35.0%
! ATCCCACCATTTTACTTTGA+TGG + chr6_2:30107073-30107092 Msa0914930:CDS 35.0%
TGAAGTGGTTGTTGTAATGA+GGG - chr6_2:30107242-30107261 None:intergenic 35.0%
ATGAAGTGGTTGTTGTAATG+AGG - chr6_2:30107243-30107262 None:intergenic 35.0%
GGTTTGGATAATAGTGATTG+GGG - chr6_2:30107266-30107285 None:intergenic 35.0%
GGGTTTGGATAATAGTGATT+GGG - chr6_2:30107267-30107286 None:intergenic 35.0%
GTTGGACAATCAAAAAAGGT+GGG - chr6_2:30107367-30107386 None:intergenic 35.0%
TGTTGGACAATCAAAAAAGG+TGG - chr6_2:30107368-30107387 None:intergenic 35.0%
!! TCTTGTTGTTCGATAAGTGT+TGG - chr6_2:30107385-30107404 None:intergenic 35.0%
TTGAAATTATTGGTAGGGGT+GGG - chr6_2:30107466-30107485 None:intergenic 35.0%
ATTGAAATTATTGGTAGGGG+TGG - chr6_2:30107467-30107486 None:intergenic 35.0%
!! GGTGGGAGTATTGAAATTAT+TGG - chr6_2:30107476-30107495 None:intergenic 35.0%
!! GATAATGTTAGTCAAGTTGG+TGG - chr6_2:30107617-30107636 None:intergenic 35.0%
!! ATTGCATACTCTGAAATGGT+AGG - chr6_2:30107667-30107686 None:intergenic 35.0%
! GAGTATTGCATACTCTGAAA+TGG - chr6_2:30107671-30107690 None:intergenic 35.0%
TGATTGATTGAGCTTTCTTG+GGG - chr6_2:30107776-30107795 None:intergenic 35.0%
GTGATTGATTGAGCTTTCTT+GGG - chr6_2:30107777-30107796 None:intergenic 35.0%
TGTGATTGATTGAGCTTTCT+TGG - chr6_2:30107778-30107797 None:intergenic 35.0%
AAAATCCTAGATCTGGTGTT+GGG - chr6_2:30107811-30107830 None:intergenic 35.0%
TAAAATCCTAGATCTGGTGT+TGG - chr6_2:30107812-30107831 None:intergenic 35.0%
ATAAGCTTTCAGAAGATTGG+TGG + chr6_2:30108024-30108043 Msa0914930:CDS 35.0%
! TTTTGGATGTGAAAAGACCT+TGG - chr6_2:30108095-30108114 None:intergenic 35.0%
! AGACCACTATTTAAAACCCT+AGG - chr6_2:30108190-30108209 None:intergenic 35.0%
! CTGAATTGTGGTCTTAATCT+AGG + chr6_2:30108236-30108255 Msa0914930:intron 35.0%
ACAAAAAAGTGACACCAAAG+AGG + chr6_2:30109085-30109104 Msa0914930:CDS 35.0%
!! ACTTTTGTTGTGACGTTTGT+TGG + chr6_2:30109110-30109129 Msa0914930:CDS 35.0%
!!! ATTTACCTGCTGGTTTTTCA+TGG - chr6_2:30109145-30109164 None:intergenic 35.0%
ATGAAAAACCAGCAGGTAAA+TGG + chr6_2:30109144-30109163 Msa0914930:CDS 35.0%
!! AGTCTTTGATGACTTGTTCT+GGG - chr6_2:30109189-30109208 None:intergenic 35.0%
!! TAGTCTTTGATGACTTGTTC+TGG - chr6_2:30109190-30109209 None:intergenic 35.0%
GTCACCAAACATTTCAAAGA+TGG + chr6_2:30109238-30109257 Msa0914930:CDS 35.0%
!! GAACCCATCTTTGAAATGTT+TGG - chr6_2:30109245-30109264 None:intergenic 35.0%
! TAAGTTTGTTTCCTGAAGGA+AGG - chr6_2:30109505-30109524 None:intergenic 35.0%
! CCAATAAGTTTGTTTCCTGA+AGG - chr6_2:30109509-30109528 None:intergenic 35.0%
CCTTCAGGAAACAAACTTAT+TGG + chr6_2:30109506-30109525 Msa0914930:CDS 35.0%
TCTAACATATCAGTCATGCT+TGG - chr6_2:30109563-30109582 None:intergenic 35.0%
AAGCATGACTGATATGTTAG+AGG + chr6_2:30109562-30109581 Msa0914930:CDS 35.0%
ATAGAAAACCATCATTGAGG+TGG - chr6_2:30109607-30109626 None:intergenic 35.0%
TGGGGTTTCAAAAAAAGAGG+CGG - chr6_2:30106984-30107003 None:intergenic 40.0%
! TTGGTGTTTGAGATGGAGAT+GGG - chr6_2:30107003-30107022 None:intergenic 40.0%
! ATTGGTGTTTGAGATGGAGA+TGG - chr6_2:30107004-30107023 None:intergenic 40.0%
AGATATGACGTTATTGGTGG+TGG - chr6_2:30107044-30107063 None:intergenic 40.0%
AGGAGATATGACGTTATTGG+TGG - chr6_2:30107047-30107066 None:intergenic 40.0%
TAAGTGGGGAAAAAGGAACA+GGG - chr6_2:30107123-30107142 None:intergenic 40.0%
TTAAGTGGGGAAAAAGGAAC+AGG - chr6_2:30107124-30107143 None:intergenic 40.0%
TGGTTGTTGTAATGAGGGTT+GGG - chr6_2:30107237-30107256 None:intergenic 40.0%
AATAGTGATTGGGGATGAAG+TGG - chr6_2:30107257-30107276 None:intergenic 40.0%
GGGGTTTGGATAATAGTGAT+TGG - chr6_2:30107268-30107287 None:intergenic 40.0%
TGTACCAAATGTTATGTGGC+CGG - chr6_2:30107308-30107327 None:intergenic 40.0%
ATCACTAACACTAGTGCTCA+TGG + chr6_2:30107328-30107347 Msa0914930:CDS 40.0%
TGAAATTATTGGTAGGGGTG+GGG - chr6_2:30107465-30107484 None:intergenic 40.0%
GTAATTCTAGTATGGGTGGA+AGG - chr6_2:30107508-30107527 None:intergenic 40.0%
CATGGGGGTAATTCTAGTAT+GGG - chr6_2:30107515-30107534 None:intergenic 40.0%
TCATGGGGGTAATTCTAGTA+TGG - chr6_2:30107516-30107535 None:intergenic 40.0%
GCGTGAAAAAAGTTGTTGTG+GGG - chr6_2:30107561-30107580 None:intergenic 40.0%
GGCGTGAAAAAAGTTGTTGT+GGG - chr6_2:30107562-30107581 None:intergenic 40.0%
!! AATGTTAGTCAAGTTGGTGG+TGG - chr6_2:30107614-30107633 None:intergenic 40.0%
AATTACCCAACACCAGATCT+AGG + chr6_2:30107803-30107822 Msa0914930:CDS 40.0%
TGTGAAAAGACCTTGGATGT+GGG - chr6_2:30108088-30108107 None:intergenic 40.0%
ATGTGAAAAGACCTTGGATG+TGG - chr6_2:30108089-30108108 None:intergenic 40.0%
AAGACCACAATTCAGTGCAA+TGG - chr6_2:30108231-30108250 None:intergenic 40.0%
!! CACAACAAAAGTGTCCTCTT+TGG - chr6_2:30109102-30109121 None:intergenic 40.0%
ATAGAGTTCCATTTACCTGC+TGG - chr6_2:30109155-30109174 None:intergenic 40.0%
GCAGGTAAATGGAACTCTAT+TGG + chr6_2:30109155-30109174 Msa0914930:CDS 40.0%
GGTAAATGGAACTCTATTGG+TGG + chr6_2:30109158-30109177 Msa0914930:CDS 40.0%
ACTTGAATATTCCTGCTCTC+TGG - chr6_2:30109299-30109318 None:intergenic 40.0%
TTCTCTAGCAGCAGGTAAAT+GGG - chr6_2:30109372-30109391 None:intergenic 40.0%
TTTCTCTAGCAGCAGGTAAA+TGG - chr6_2:30109373-30109392 None:intergenic 40.0%
GATTCAATTTCTCTAGCAGC+AGG - chr6_2:30109380-30109399 None:intergenic 40.0%
AGGAAGGATTTGTGATTCAC+CGG - chr6_2:30109489-30109508 None:intergenic 40.0%
GAATCACAAATCCTTCCTTC+AGG + chr6_2:30109491-30109510 Msa0914930:CDS 40.0%
!! GATTTTGACCACCTCAATGA+TGG + chr6_2:30109596-30109615 Msa0914930:CDS 40.0%
! AAAAGAGGCGGGGTTAGTAA+AGG - chr6_2:30106972-30106991 None:intergenic 45.0%
GGGTTTCAAAAAAAGAGGCG+GGG - chr6_2:30106982-30107001 None:intergenic 45.0%
GGGGTTTCAAAAAAAGAGGC+GGG - chr6_2:30106983-30107002 None:intergenic 45.0%
! TGGTGTTTGAGATGGAGATG+GGG - chr6_2:30107002-30107021 None:intergenic 45.0%
!! TATGACGTTATTGGTGGTGG+AGG - chr6_2:30107041-30107060 None:intergenic 45.0%
AGGAACAGGGTTATCGTCTT+GGG - chr6_2:30107110-30107129 None:intergenic 45.0%
AAGGAACAGGGTTATCGTCT+TGG - chr6_2:30107111-30107130 None:intergenic 45.0%
ATAGTGGTGGTAGTTGGGAT+GGG - chr6_2:30107214-30107233 None:intergenic 45.0%
! TTGGGATAGTGGTGGTAGTT+GGG - chr6_2:30107219-30107238 None:intergenic 45.0%
TGTAATGAGGGTTGGGATAG+TGG - chr6_2:30107230-30107249 None:intergenic 45.0%
GTGGTTGTTGTAATGAGGGT+TGG - chr6_2:30107238-30107257 None:intergenic 45.0%
ATTCCCGGCCACATAACATT+TGG + chr6_2:30107301-30107320 Msa0914930:CDS 45.0%
GTACCAAATGTTATGTGGCC+GGG - chr6_2:30107307-30107326 None:intergenic 45.0%
!! AGTTGTTGTGGGGTTAGCTA+AGG - chr6_2:30107551-30107570 None:intergenic 45.0%
CGGCGTGAAAAAAGTTGTTG+TGG - chr6_2:30107563-30107582 None:intergenic 45.0%
AGCTTTCTTGGGGATTGTTG+TGG - chr6_2:30107766-30107785 None:intergenic 45.0%
! TTTCAGAAGATTGGTGGTCG+TGG + chr6_2:30108030-30108049 Msa0914930:CDS 45.0%
TGGTGGTCGTGGACAAAATA+TGG + chr6_2:30108041-30108060 Msa0914930:CDS 45.0%
GTGAAAAGACCTTGGATGTG+GGG - chr6_2:30108087-30108106 None:intergenic 45.0%
ATTCAGTGCAATGGCAAGGA+TGG - chr6_2:30108222-30108241 None:intergenic 45.0%
CACAATTCAGTGCAATGGCA+AGG - chr6_2:30108226-30108245 None:intergenic 45.0%
CTTGCCATTGCACTGAATTG+TGG + chr6_2:30108224-30108243 Msa0914930:intron 45.0%
CACAACCATGAAAAACCAGC+AGG + chr6_2:30109137-30109156 Msa0914930:CDS 45.0%
!! CTTTGATGACTTGTTCTGGG+AGG - chr6_2:30109186-30109205 None:intergenic 45.0%
AAGACTAGATTACCCGCTGT+TGG + chr6_2:30109203-30109222 Msa0914930:CDS 45.0%
TACCCGCTGTTGGAAATTTC+AGG + chr6_2:30109213-30109232 Msa0914930:CDS 45.0%
GACCTGAAATTTCCAACAGC+GGG - chr6_2:30109218-30109237 None:intergenic 45.0%
CGACCTGAAATTTCCAACAG+CGG - chr6_2:30109219-30109238 None:intergenic 45.0%
TGATTCACCGGAGTAAACCT+GGG - chr6_2:30109477-30109496 None:intergenic 45.0%
!! TAAAAAAAAATGTATTTATA+TGG + chr6_2:30108711-30108730 Msa0914930:intron 5.0%
! GAGGTGGTGGTGACAATGAT+TGG - chr6_2:30107022-30107041 None:intergenic 50.0%
TAGTGGTGGTAGTTGGGATG+GGG - chr6_2:30107213-30107232 None:intergenic 50.0%
! GATAGTGGTGGTAGTTGGGA+TGG - chr6_2:30107215-30107234 None:intergenic 50.0%
! GTTGGGATAGTGGTGGTAGT+TGG - chr6_2:30107220-30107239 None:intergenic 50.0%
! AATGAGGGTTGGGATAGTGG+TGG - chr6_2:30107227-30107246 None:intergenic 50.0%
TAGTGGTGGTTGAAGGGGTT+TGG - chr6_2:30107282-30107301 None:intergenic 50.0%
GGGAATAGTGGTGGTTGAAG+GGG - chr6_2:30107287-30107306 None:intergenic 50.0%
CGGGAATAGTGGTGGTTGAA+GGG - chr6_2:30107288-30107307 None:intergenic 50.0%
CCTTCAACCACCACTATTCC+CGG + chr6_2:30107286-30107305 Msa0914930:CDS 50.0%
TGTTATGTGGCCGGGAATAG+TGG - chr6_2:30107299-30107318 None:intergenic 50.0%
ATGGGTGGAAGGAGTAGTGA+GGG - chr6_2:30107497-30107516 None:intergenic 50.0%
TATGGGTGGAAGGAGTAGTG+AGG - chr6_2:30107498-30107517 None:intergenic 50.0%
GGGGGTAATTCTAGTATGGG+TGG - chr6_2:30107512-30107531 None:intergenic 50.0%
!! AAGGCGTTGGTAGTGGTCAT+GGG - chr6_2:30107532-30107551 None:intergenic 50.0%
!! TAAGGCGTTGGTAGTGGTCA+TGG - chr6_2:30107533-30107552 None:intergenic 50.0%
!! GTTAGCTAAGGCGTTGGTAG+TGG - chr6_2:30107539-30107558 None:intergenic 50.0%
CTAATAGGTGCAGTGGTGGT+CGG - chr6_2:30107583-30107602 None:intergenic 50.0%
!! TCAAGTTGGTGGTGGTGCTA+GGG - chr6_2:30107606-30107625 None:intergenic 50.0%
TCGTTTCAGGGAGAGAGAGT+TGG + chr6_2:30108888-30108907 Msa0914930:intron 50.0%
CGTTTCAGGGAGAGAGAGTT+GGG + chr6_2:30108889-30108908 Msa0914930:intron 50.0%
ATGTCGATCATCCAGAGAGC+AGG + chr6_2:30109285-30109304 Msa0914930:CDS 50.0%
! ACCTGGGCATTGCTACTCAT+TGG - chr6_2:30109461-30109480 None:intergenic 50.0%
AGCAATGCCCAGGTTTACTC+CGG + chr6_2:30109467-30109486 Msa0914930:CDS 50.0%
GTGATTCACCGGAGTAAACC+TGG - chr6_2:30109478-30109497 None:intergenic 50.0%
!! GTTATTGGTGGTGGAGGTGG+TGG - chr6_2:30107035-30107054 None:intergenic 55.0%
!! GACGTTATTGGTGGTGGAGG+TGG - chr6_2:30107038-30107057 None:intergenic 55.0%
CAGGGTTATCGTCTTGGGCA+AGG - chr6_2:30107105-30107124 None:intergenic 55.0%
!! ATGGAGAGAGGTGGTGGGAT+TGG - chr6_2:30107188-30107207 None:intergenic 55.0%
AGTGGTGGTAGTTGGGATGG+GGG - chr6_2:30107212-30107231 None:intergenic 55.0%
CCGGGAATAGTGGTGGTTGA+AGG - chr6_2:30107289-30107308 None:intergenic 55.0%
TATGTGGCCGGGAATAGTGG+TGG - chr6_2:30107296-30107315 None:intergenic 55.0%
TTGGTAGGGGTGGGGTTAAC+AGG - chr6_2:30107457-30107476 None:intergenic 55.0%
GTGGAAGGAGTAGTGAGGGT+GGG - chr6_2:30107493-30107512 None:intergenic 55.0%
!! AGGCGTTGGTAGTGGTCATG+GGG - chr6_2:30107531-30107550 None:intergenic 55.0%
!! TGTGGGGTTAGCTAAGGCGT+TGG - chr6_2:30107545-30107564 None:intergenic 55.0%
AGGGCTAATAGGTGCAGTGG+TGG - chr6_2:30107587-30107606 None:intergenic 55.0%
GCTAGGGCTAATAGGTGCAG+TGG - chr6_2:30107590-30107609 None:intergenic 55.0%
! GTGGTGGTGCTAGGGCTAAT+AGG - chr6_2:30107598-30107617 None:intergenic 55.0%
!! GTCAAGTTGGTGGTGGTGCT+AGG - chr6_2:30107607-30107626 None:intergenic 55.0%
GCCAATGAGTAGCAATGCCC+AGG + chr6_2:30109457-30109476 Msa0914930:CDS 55.0%
TGGTAGTTGGGATGGGGGCA+TGG - chr6_2:30107207-30107226 None:intergenic 60.0%
GGTGGAAGGAGTAGTGAGGG+TGG - chr6_2:30107494-30107513 None:intergenic 60.0%
!! GGCGTTGGTAGTGGTCATGG+GGG - chr6_2:30107530-30107549 None:intergenic 60.0%
! TTAGCGGGTCCCCACATCCA+AGG + chr6_2:30108075-30108094 Msa0914930:CDS 60.0%
GGGGCATGGAGAGAGGTGGT+GGG - chr6_2:30107193-30107212 None:intergenic 65.0%
! GATGGGGGCATGGAGAGAGG+TGG - chr6_2:30107197-30107216 None:intergenic 65.0%
! TGGGATGGGGGCATGGAGAG+AGG - chr6_2:30107200-30107219 None:intergenic 65.0%
! GGGGGCATGGAGAGAGGTGG+TGG - chr6_2:30107194-30107213 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 30106914 30109634 30106914 ID=Msa0914930;Name=Msa0914930
chr6_2 mRNA 30106914 30109634 30106914 ID=Msa0914930-mRNA-1;Parent=Msa0914930;Name=Msa0914930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|559
chr6_2 exon 30106914 30107875 30106914 ID=Msa0914930-mRNA-1:exon:5491;Parent=Msa0914930-mRNA-1
chr6_2 exon 30107980 30108096 30107980 ID=Msa0914930-mRNA-1:exon:5492;Parent=Msa0914930-mRNA-1
chr6_2 exon 30109034 30109634 30109034 ID=Msa0914930-mRNA-1:exon:5493;Parent=Msa0914930-mRNA-1
chr6_2 CDS 30106914 30107875 30106914 ID=Msa0914930-mRNA-1:cds;Parent=Msa0914930-mRNA-1
chr6_2 CDS 30107980 30108096 30107980 ID=Msa0914930-mRNA-1:cds;Parent=Msa0914930-mRNA-1
chr6_2 CDS 30109034 30109634 30109034 ID=Msa0914930-mRNA-1:cds;Parent=Msa0914930-mRNA-1
Gene Sequence

>Msa0914930

ATGGACATTGACGATTGGGATCTCTTTTCCTTTGTCAATAACAACAAAGCTACAACCTTTACTAACCCCGCCTCTTTTTTTGAAACCCCATCTCCATCTCAAACACCAATCATTGTCACCACCACCTCCACCACCAATAACGTCATATCTCCTCAAAATATCCCACCATTTTACTTTGATGGTTTTAGCCTTGCCCAAGACGATAACCCTGTTCCTTTTTCCCCACTTAAACAAAATGATTTCATAGATCTAGACAAATTGAAAGTCAATTCCAATCCCACCACCTCTCTCCATGCCCCCATCCCAACTACCACCACTATCCCAACCCTCATTACAACAACCACTTCATCCCCAATCACTATTATCCAAACCCCTTCAACCACCACTATTCCCGGCCACATAACATTTGGTACAATCACTAACACTAGTGCTCATGGTTTCAAAAAAAAACCCACCTTTTTTGATTGTCCAACACTTATCGAACAACAAGAAATGCAATCAAATGGGCACGAGCTAAATAATTTTATACTCAACAAAAATCCTGTTAACCCCACCCCTACCAATAATTTCAATACTCCCACCCTCACTACTCCTTCCACCCATACTAGAATTACCCCCATGACCACTACCAACGCCTTAGCTAACCCCACAACAACTTTTTTCACGCCGACCACCACTGCACCTATTAGCCCTAGCACCACCACCAACTTGACTAACATTATCACTAGTGTTCATGGAACCAATCAATATCCTACCATTTCAGAGTATGCAATACTCATCAAACAACAACAAATTCAACCAAACAATAACAGTCAAGTGTTTGATCATGCATACAACTATTCATTTGCTCCACAACAATCCCCAAGAAAGCTCAATCAATCACAAATTCAATTACCCAACACCAGATCTAGGATTTTACCTAATTCAGATTCACAAAAAGCAAAACATAATTCAAGAATCAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAATAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGAGCTACTTTAGATGTAGCAGTTCTAAAGATTGTTCAGCGAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAACCATGAAAAACCAGCAGGTAAATGGAACTCTATTGGTGGAACCTCCCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAGGTCGTCACCAAACATTTCAAAGATGGGTTCTCAAAATGTGACGATGATGCATGTCGATCATCCAGAGAGCAGGAATATTCAAGTTCTCTCTAGTCAATCAAAAATCCCTCATTCAGAAACTGAACTTATAGAGACCCATTTACCTGCTGCTAGAGAAATTGAATCATCCCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTGCAGTTTGATGAGCCAATGAGTAGCAATGCCCAGGTTTACTCCGGTGAATCACAAATCCTTCCTTCAGGAAACAAACTTATTGGAAACTCTGATGACGATGAAGAAATCATGATACCAAGCATGACTGATATGTTAGAGGATTTCTTATTGGATTTTGACCACCTCAATGATGGTTTTCTATTTCCTTAG
Protein sequence

>Msa0914930

MDIDDWDLFSFVNNNKATTFTNPASFFETPSPSQTPIIVTTTSTTNNVISPQNIPPFYFDGFSLAQDDNPVPFSPLKQNDFIDLDKLKVNSNPTTSLHAPIPTTTTIPTLITTTTSSPITIIQTPSTTTIPGHITFGTITNTSAHGFKKKPTFFDCPTLIEQQEMQSNGHELNNFILNKNPVNPTPTNNFNTPTLTTPSTHTRITPMTTTNALANPTTTFFTPTTTAPISPSTTTNLTNIITSVHGTNQYPTISEYAILIKQQQIQPNNNSQVFDHAYNYSFAPQQSPRKLNQSQIQLPNTRSRILPNSDSQKAKHNSRIRKINNKVTLECHVRTNKLSEDWWSWTKYGQKNISGSPHPRSYFRCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKWNSIGGTSQNKSSKTRLPAVGNFRSSPNISKMGSQNVTMMHVDHPESRNIQVLSSQSKIPHSETELIETHLPAAREIESSPNVENLFSYDVTMLQFDEPMSSNAQVYSGESQILPSGNKLIGNSDDDEEIMIPSMTDMLEDFLLDFDHLNDGFLFP*