AlfalfaGEDB | Msa0914990

M. sativa cultivar zhongmu-4 / Msa0914990

KEGG: K14571
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914990	XP_039684204.1	90.400	250	23	1	1	250	1	249	5.77e-164	463

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914990	sp\|Q1G3Q4\|RITF1_ARATH	40.392	255	130	5	12	249	6	255	6.33e-51	169

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0914990	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914990	MtrunA17_Chr7g0230511	90.323	248	23	1	3	250	1	247	3.22e-166	459
Msa0914990	MtrunA17_Chr2g0297251	41.909	241	117	5	12	249	37	257	9.06e-56	179
Msa0914990	MtrunA17_Chr4g0065041	36.576	257	131	5	12	249	8	251	3.50e-52	170
Msa0914990	MtrunA17_Chr5g0411151	35.000	240	110	6	12	249	35	230	1.65e-36	129
Msa0914990	MtrunA17_Chr4g0040071	32.917	240	113	5	12	249	15	208	3.70e-36	127
Msa0914990	MtrunA17_Chr5g0395181	42.537	134	75	2	12	143	21	154	5.81e-35	124
Msa0914990	MtrunA17_Chr1g0179781	32.377	244	116	8	9	249	4	201	1.93e-34	122
Msa0914990	MtrunA17_Chr7g0265291	43.165	139	74	3	9	142	4	142	5.19e-34	121
Msa0914990	MtrunA17_Chr8g0366581	42.520	127	71	2	12	136	33	159	2.90e-33	120
Msa0914990	MtrunA17_Chr2g0320521	28.346	254	145	10	9	250	4	232	6.23e-25	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0914990	AT3G60670.1	51.822	247	103	7	12	250	7	245	1.00e-78	238
Msa0914990	AT2G12646.3	40.392	255	130	5	12	249	3	252	6.10e-52	169
Msa0914990	AT2G12646.1	40.392	255	130	5	12	249	6	255	6.44e-52	169
Msa0914990	AT2G12646.2	40.392	255	130	5	12	249	6	255	6.44e-52	169
Msa0914990	AT1G31040.1	40.167	239	127	4	12	249	19	242	2.17e-51	168
Msa0914990	AT1G32700.1	43.382	136	75	2	8	141	8	143	9.07e-34	121
Msa0914990	AT4G17900.1	31.535	241	114	8	12	249	34	226	1.13e-32	119
Msa0914990	AT4G17900.2	31.535	241	114	8	12	249	20	212	1.42e-32	118
Msa0914990	AT1G21000.2	31.557	244	148	7	12	249	13	243	4.63e-32	118
Msa0914990	AT1G21000.1	31.557	244	148	7	12	249	16	246	4.87e-32	118

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Find 56 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTGGTTCACCATC+TGG	0.372579	6_2:-30292499	Msa0914990:CDS
AAACCGAACTTCATCCGGTT+CGG	0.428487	6_2:-30292380	Msa0914990:CDS
AACCGAACTTCATCCGGTTC+GGG	0.350580	6_2:-30292379	Msa0914990:CDS
AACCTGCAAGAGTCTGTGAG+AGG	0.674336	6_2:+30293605	None:intergenic
AAGAGTCTGTGAGAGGCATG+AGG	0.626300	6_2:+30293612	None:intergenic
AGAATCAGATAATGGTGGCA+TGG	0.607517	6_2:+30292456	None:intergenic
AGAATCGGCGTCATCACTTT+CGG	0.379340	6_2:-30292286	Msa0914990:CDS
AGAGAGAGCAGAATTTGTAA+GGG	0.625118	6_2:+30293091	None:intergenic
AGCATAACTTGAAGCCAACG+TGG	0.691652	6_2:+30293744	None:intergenic
AGCCACTTGGTGAAAACATT+TGG	0.358838	6_2:-30292511	Msa0914990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACCAACAAGATACTAAAAT+AGG	+	chr6_2:30292247-30292266	None:intergenic	30.0%
ACACCAACACAAATTAATTG+TGG	+	chr6_2:30292905-30292924	None:intergenic	30.0%
CACCAACAAGATACTAAAAT+AGG	+	chr6_2:30292247-30292266	None:intergenic	30.0%
ACACCAACACAAATTAATTG+TGG	+	chr6_2:30292905-30292924	None:intergenic	30.0%
TTGAGAGAGAAAGAAGAAGA+CGG	+	chr6_2:30292561-30292580	None:intergenic	35.0%
GAAAGAGAAAAGAAGGGTTA+AGG	+	chr6_2:30292592-30292611	None:intergenic	35.0%
CTACAGTTCTACAGAACAAA+CGG	-	chr6_2:30292936-30292955	Msa0914990:intron	35.0%
TTGCTTGAGTAGCATTTCTT+TGG	+	chr6_2:30292996-30293015	None:intergenic	35.0%
AGAGAGAGCAGAATTTGTAA+GGG	+	chr6_2:30293052-30293071	None:intergenic	35.0%
TGTAGTCCAGAATCAGATAA+TGG	+	chr6_2:30293695-30293714	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	30292189	30293973	30292189	ID=Msa0914990;Name=Msa0914990
chr6_2	mRNA	30292189	30293973	30292189	ID=Msa0914990-mRNA-1;Parent=Msa0914990;Name=Msa0914990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|0.8\|0.75\|0.8\|5\|0\|250
chr6_2	exon	30293971	30293973	30293971	ID=Msa0914990-mRNA-1:exon:5520;Parent=Msa0914990-mRNA-1
chr6_2	exon	30293608	30293796	30293608	ID=Msa0914990-mRNA-1:exon:5519;Parent=Msa0914990-mRNA-1
chr6_2	exon	30293420	30293494	30293420	ID=Msa0914990-mRNA-1:exon:5518;Parent=Msa0914990-mRNA-1
chr6_2	exon	30293083	30293220	30293083	ID=Msa0914990-mRNA-1:exon:5517;Parent=Msa0914990-mRNA-1
chr6_2	exon	30292189	30292536	30292189	ID=Msa0914990-mRNA-1:exon:5516;Parent=Msa0914990-mRNA-1
chr6_2	CDS	30293971	30293973	30293971	ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1
chr6_2	CDS	30293608	30293796	30293608	ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1
chr6_2	CDS	30293420	30293494	30293420	ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1
chr6_2	CDS	30293083	30293220	30293083	ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1
chr6_2	CDS	30292189	30292536	30292189	ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1

Gene Sequence

>Msa0914990

ATGTTTATGTGTTCTTCACCAAATGTTGTTGTTCCACGTTGGCTTCAAGTTATGCTATCTGAGAAATTCTACAACGCTTGTTTAATTCATCATGAAGAAAAAAGGAATGAGAAAAATGTTTATTGTTTGCATTGTTGCATCAGTCTTTGTACTCACTGTGTTTCTCCTCATGCCTCTCACAGACTCTTGCAGATAAGAAGATATGTGTATCATGATATTATAAGGATGGATGATGCTGCAAAGTTAATTGACTGTTCTTCTATTCAATTCTACAGAACAAACGGTGCAAAAGTGATTTTCATAAATCAAAGACCAATTCCAAAGAAATGCTACTCAAGCAATATCTGCAGAACCTGTGCCAGAAGTCTGCAAGACCCTTACAAATTCTGCTCTCTCTCTTGCAAGGTGAGCCACTTGGTGAAAACATTTGGTTCACCATCTGGTTACTTACTCGAGTGCAACACCATGCCACCATTATCTGATTCTGGACTACATAACGGTCTAATGACACCTGACTTGGTTCTCGAACCATCCGGTTCAAACCGAACTTCATCCGGTTCGGGTGGATACAAAGACATTGATTGCAAAACCGCCCTTGCTTGCACCGCTACTACTGAGGTTGTCCGAAAGAAGAGAATCGGCGTCATCACTTTCGGACCACCGTGTCGGCCTGCATGCTCGCCTGTGGCGGAAGTCTCGGGGAGTTTGATGAACAGGAGGAAAGGAACGCCACATAGAGCCCCGTTATATTGA

Protein sequence

>Msa0914990

MFMCSSPNVVVPRWLQVMLSEKFYNACLIHHEEKRNEKNVYCLHCCISLCTHCVSPHASHRLLQIRRYVYHDIIRMDDAAKLIDCSSIQFYRTNGAKVIFINQRPIPKKCYSSNICRTCARSLQDPYKFCSLSCKVSHLVKTFGSPSGYLLECNTMPPLSDSGLHNGLMTPDLVLEPSGSNRTSSGSGGYKDIDCKTALACTATTEVVRKKRIGVITFGPPCRPACSPVAEVSGSLMNRRKGTPHRAPLY*