Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914990 | XP_039684204.1 | 90.400 | 250 | 23 | 1 | 1 | 250 | 1 | 249 | 5.77e-164 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914990 | sp|Q1G3Q4|RITF1_ARATH | 40.392 | 255 | 130 | 5 | 12 | 249 | 6 | 255 | 6.33e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0914990 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914990 | MtrunA17_Chr7g0230511 | 90.323 | 248 | 23 | 1 | 3 | 250 | 1 | 247 | 3.22e-166 | 459 |
| Msa0914990 | MtrunA17_Chr2g0297251 | 41.909 | 241 | 117 | 5 | 12 | 249 | 37 | 257 | 9.06e-56 | 179 |
| Msa0914990 | MtrunA17_Chr4g0065041 | 36.576 | 257 | 131 | 5 | 12 | 249 | 8 | 251 | 3.50e-52 | 170 |
| Msa0914990 | MtrunA17_Chr5g0411151 | 35.000 | 240 | 110 | 6 | 12 | 249 | 35 | 230 | 1.65e-36 | 129 |
| Msa0914990 | MtrunA17_Chr4g0040071 | 32.917 | 240 | 113 | 5 | 12 | 249 | 15 | 208 | 3.70e-36 | 127 |
| Msa0914990 | MtrunA17_Chr5g0395181 | 42.537 | 134 | 75 | 2 | 12 | 143 | 21 | 154 | 5.81e-35 | 124 |
| Msa0914990 | MtrunA17_Chr1g0179781 | 32.377 | 244 | 116 | 8 | 9 | 249 | 4 | 201 | 1.93e-34 | 122 |
| Msa0914990 | MtrunA17_Chr7g0265291 | 43.165 | 139 | 74 | 3 | 9 | 142 | 4 | 142 | 5.19e-34 | 121 |
| Msa0914990 | MtrunA17_Chr8g0366581 | 42.520 | 127 | 71 | 2 | 12 | 136 | 33 | 159 | 2.90e-33 | 120 |
| Msa0914990 | MtrunA17_Chr2g0320521 | 28.346 | 254 | 145 | 10 | 9 | 250 | 4 | 232 | 6.23e-25 | 99.0 |
| Msa0914990 | MtrunA17_Chr4g0052451 | 52.381 | 84 | 33 | 1 | 62 | 138 | 10 | 93 | 6.53e-24 | 92.0 |
| Msa0914990 | MtrunA17_Chr2g0320561 | 27.559 | 254 | 156 | 7 | 11 | 250 | 4 | 243 | 1.52e-22 | 92.8 |
| Msa0914990 | MtrunA17_Chr4g0020811 | 36.842 | 152 | 78 | 7 | 9 | 143 | 4 | 154 | 5.70e-20 | 83.6 |
| Msa0914990 | MtrunA17_Chr2g0308401 | 36.184 | 152 | 79 | 7 | 9 | 143 | 2 | 152 | 2.01e-19 | 82.4 |
| Msa0914990 | MtrunA17_Chr8g0392151 | 28.421 | 190 | 104 | 5 | 6 | 171 | 7 | 188 | 4.19e-19 | 83.6 |
| Msa0914990 | MtrunA17_Chr5g0434331 | 29.861 | 144 | 89 | 4 | 5 | 141 | 36 | 174 | 9.08e-17 | 76.3 |
| Msa0914990 | MtrunA17_Chr2g0320551 | 32.609 | 138 | 82 | 4 | 11 | 137 | 4 | 141 | 4.29e-16 | 73.6 |
| Msa0914990 | MtrunA17_Chr4g0052461 | 46.296 | 54 | 29 | 0 | 12 | 65 | 22 | 75 | 4.68e-16 | 70.9 |
| Msa0914990 | MtrunA17_Chr1g0161601 | 46.053 | 76 | 39 | 1 | 14 | 89 | 50 | 123 | 8.72e-15 | 69.3 |
| Msa0914990 | MtrunA17_Chr8g0386511 | 29.655 | 145 | 92 | 5 | 50 | 186 | 4 | 146 | 1.23e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914990 | AT3G60670.1 | 51.822 | 247 | 103 | 7 | 12 | 250 | 7 | 245 | 1.00e-78 | 238 |
| Msa0914990 | AT2G12646.3 | 40.392 | 255 | 130 | 5 | 12 | 249 | 3 | 252 | 6.10e-52 | 169 |
| Msa0914990 | AT2G12646.1 | 40.392 | 255 | 130 | 5 | 12 | 249 | 6 | 255 | 6.44e-52 | 169 |
| Msa0914990 | AT2G12646.2 | 40.392 | 255 | 130 | 5 | 12 | 249 | 6 | 255 | 6.44e-52 | 169 |
| Msa0914990 | AT1G31040.1 | 40.167 | 239 | 127 | 4 | 12 | 249 | 19 | 242 | 2.17e-51 | 168 |
| Msa0914990 | AT1G32700.1 | 43.382 | 136 | 75 | 2 | 8 | 141 | 8 | 143 | 9.07e-34 | 121 |
| Msa0914990 | AT4G17900.1 | 31.535 | 241 | 114 | 8 | 12 | 249 | 34 | 226 | 1.13e-32 | 119 |
| Msa0914990 | AT4G17900.2 | 31.535 | 241 | 114 | 8 | 12 | 249 | 20 | 212 | 1.42e-32 | 118 |
| Msa0914990 | AT1G21000.2 | 31.557 | 244 | 148 | 7 | 12 | 249 | 13 | 243 | 4.63e-32 | 118 |
| Msa0914990 | AT1G21000.1 | 31.557 | 244 | 148 | 7 | 12 | 249 | 16 | 246 | 4.87e-32 | 118 |
| Msa0914990 | AT1G76590.1 | 31.020 | 245 | 153 | 7 | 8 | 249 | 14 | 245 | 1.63e-30 | 114 |
| Msa0914990 | AT1G43000.1 | 31.557 | 244 | 133 | 6 | 8 | 249 | 5 | 216 | 3.60e-30 | 112 |
| Msa0914990 | AT1G43000.2 | 31.557 | 244 | 133 | 6 | 8 | 249 | 12 | 223 | 3.72e-30 | 112 |
| Msa0914990 | AT2G01818.1 | 32.129 | 249 | 118 | 9 | 14 | 250 | 13 | 222 | 7.09e-30 | 112 |
| Msa0914990 | AT2G27930.1 | 40.000 | 140 | 72 | 3 | 12 | 139 | 4 | 143 | 2.62e-29 | 109 |
| Msa0914990 | AT2G27930.4 | 40.000 | 140 | 72 | 3 | 12 | 139 | 4 | 143 | 2.62e-29 | 109 |
| Msa0914990 | AT2G27930.3 | 40.876 | 137 | 69 | 3 | 12 | 136 | 4 | 140 | 2.71e-29 | 108 |
| Msa0914990 | AT2G27930.2 | 40.876 | 137 | 69 | 3 | 12 | 136 | 4 | 140 | 2.71e-29 | 108 |
| Msa0914990 | AT5G46710.3 | 39.706 | 136 | 77 | 4 | 12 | 143 | 12 | 146 | 4.22e-26 | 101 |
| Msa0914990 | AT5G46710.1 | 39.706 | 136 | 77 | 4 | 12 | 143 | 28 | 162 | 6.62e-26 | 101 |
| Msa0914990 | AT5G46710.2 | 41.085 | 129 | 71 | 4 | 12 | 136 | 28 | 155 | 1.95e-25 | 98.6 |
| Msa0914990 | AT1G32700.2 | 45.192 | 104 | 55 | 2 | 40 | 141 | 1 | 104 | 2.41e-24 | 95.9 |
| Msa0914990 | AT2G27930.5 | 42.000 | 100 | 46 | 2 | 47 | 136 | 46 | 143 | 1.09e-16 | 76.3 |
| Msa0914990 | AT2G27930.6 | 42.000 | 100 | 46 | 2 | 47 | 136 | 46 | 143 | 1.09e-16 | 76.3 |
| Msa0914990 | AT2G01818.2 | 30.729 | 192 | 86 | 8 | 67 | 250 | 6 | 158 | 2.85e-13 | 66.2 |
Find 56 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGGTCTTGCAGACTTC+TGG | 0.273992 | 6_2:+30293107 | None:intergenic |
| TTGCTTGAGTAGCATTTCTT+TGG | 0.284411 | 6_2:+30293147 | None:intergenic |
| TGCCTCTCACAGACTCTTGC+AGG | 0.308178 | 6_2:-30293607 | Msa0914990:intron |
| TCGCCTGTGGCGGAAGTCTC+GGG | 0.313389 | 6_2:-30292241 | Msa0914990:CDS |
| AACCGAACTTCATCCGGTTC+GGG | 0.350580 | 6_2:-30292379 | Msa0914990:CDS |
| AGCCACTTGGTGAAAACATT+TGG | 0.358838 | 6_2:-30292511 | Msa0914990:CDS |
| ATGTGTATCATGATATTATA+AGG | 0.360021 | 6_2:-30293462 | Msa0914990:CDS |
| GAGTAGCATTTCTTTGGAAT+TGG | 0.364293 | 6_2:+30293153 | None:intergenic |
| AAAACATTTGGTTCACCATC+TGG | 0.372579 | 6_2:-30292499 | Msa0914990:CDS |
| AGAATCGGCGTCATCACTTT+CGG | 0.379340 | 6_2:-30292286 | Msa0914990:CDS |
| TGACGCCGATTCTCTTCTTT+CGG | 0.385292 | 6_2:+30292296 | None:intergenic |
| CACCCGAACCGGATGAAGTT+CGG | 0.397970 | 6_2:+30292377 | None:intergenic |
| GGTTCAAACCGAACTTCATC+CGG | 0.422747 | 6_2:-30292385 | Msa0914990:CDS |
| AAACCGAACTTCATCCGGTT+CGG | 0.428487 | 6_2:-30292380 | Msa0914990:CDS |
| ATGCCACCATTATCTGATTC+TGG | 0.428827 | 6_2:-30292454 | Msa0914990:CDS |
| GAGAGAGAGCAGAATTTGTA+AGG | 0.431185 | 6_2:+30293090 | None:intergenic |
| TCTCGGGGAGTTTGATGAAC+AGG | 0.433221 | 6_2:-30292225 | Msa0914990:CDS |
| CAACGTGGAACAACAACATT+TGG | 0.443276 | 6_2:+30293759 | None:intergenic |
| GTCTTTGTATCCACCCGAAC+CGG | 0.457461 | 6_2:+30292366 | None:intergenic |
| CAGTAGTAGCGGTGCAAGCA+AGG | 0.459090 | 6_2:+30292326 | None:intergenic |
| GGATGAAGTTCGGTTTGAAC+CGG | 0.475769 | 6_2:+30292387 | None:intergenic |
| TGTAGTCCAGAATCAGATAA+TGG | 0.495163 | 6_2:+30292448 | None:intergenic |
| GCCTGCATGCTCGCCTGTGG+CGG | 0.495311 | 6_2:-30292251 | Msa0914990:CDS |
| TCCGCCACAGGCGAGCATGC+AGG | 0.515933 | 6_2:+30292250 | None:intergenic |
| GACTTGGTTCTCGAACCATC+CGG | 0.517696 | 6_2:-30292406 | Msa0914990:CDS |
| GTCTTGCAGACTTCTGGCAC+AGG | 0.523638 | 6_2:+30293113 | None:intergenic |
| CTCCCCGAGACTTCCGCCAC+AGG | 0.531866 | 6_2:+30292238 | None:intergenic |
| CGCCTGTGGCGGAAGTCTCG+GGG | 0.537186 | 6_2:-30292240 | Msa0914990:CDS |
| CTACAGTTCTACAGAACAAA+CGG | 0.540640 | 6_2:-30293204 | Msa0914990:intron |
| CGGTCTAATGACACCTGACT+TGG | 0.541020 | 6_2:-30292422 | Msa0914990:CDS |
| CAATATAACGGGGCTCTATG+TGG | 0.542420 | 6_2:+30292190 | None:intergenic |
| GATGGTTCGAGAACCAAGTC+AGG | 0.544903 | 6_2:+30292409 | None:intergenic |
| GTTGTCCGAAAGAAGAGAAT+CGG | 0.546928 | 6_2:-30292301 | Msa0914990:CDS |
| CGAACTTCATCCGGTTCGGG+TGG | 0.553229 | 6_2:-30292376 | Msa0914990:CDS |
| AGTAGTAGCGGTGCAAGCAA+GGG | 0.567330 | 6_2:+30292327 | None:intergenic |
| ATTCTGCTCTCTCTCTTGCA+AGG | 0.568123 | 6_2:-30293082 | Msa0914990:intron |
| TGCTTGCACCGCTACTACTG+AGG | 0.570706 | 6_2:-30292323 | Msa0914990:CDS |
| TCTGATTCTGGACTACATAA+CGG | 0.574208 | 6_2:-30292442 | Msa0914990:CDS |
| GTATCATGATATTATAAGGA+TGG | 0.579900 | 6_2:-30293458 | Msa0914990:CDS |
| CAAATGTTGTTGTTCCACGT+TGG | 0.592524 | 6_2:-30293758 | Msa0914990:CDS |
| AGTTTGATGAACAGGAGGAA+AGG | 0.593172 | 6_2:-30292217 | Msa0914990:CDS |
| TCGGCCTGCATGCTCGCCTG+TGG | 0.598030 | 6_2:-30292254 | Msa0914990:CDS |
| GAAGTTCGGTTTGAACCGGA+TGG | 0.598179 | 6_2:+30292391 | None:intergenic |
| AGAATCAGATAATGGTGGCA+TGG | 0.607517 | 6_2:+30292456 | None:intergenic |
| CACTCGAGTAAGTAACCAGA+TGG | 0.607563 | 6_2:+30292484 | None:intergenic |
| AGAGAGAGCAGAATTTGTAA+GGG | 0.625118 | 6_2:+30293091 | None:intergenic |
| GGCGAGCATGCAGGCCGACA+CGG | 0.625388 | 6_2:+30292259 | None:intergenic |
| AAGAGTCTGTGAGAGGCATG+AGG | 0.626300 | 6_2:+30293612 | None:intergenic |
| AGTAGCGGTGCAAGCAAGGG+CGG | 0.633628 | 6_2:+30292330 | None:intergenic |
| TCACTTTCGGACCACCGTGT+CGG | 0.637993 | 6_2:-30292273 | Msa0914990:CDS |
| CGGGGAGTTTGATGAACAGG+AGG | 0.642647 | 6_2:-30292222 | Msa0914990:CDS |
| TCGGACAACCTCAGTAGTAG+CGG | 0.661897 | 6_2:+30292315 | None:intergenic |
| AACCTGCAAGAGTCTGTGAG+AGG | 0.674336 | 6_2:+30293605 | None:intergenic |
| AGCATAACTTGAAGCCAACG+TGG | 0.691652 | 6_2:+30293744 | None:intergenic |
| AGTCCAGAATCAGATAATGG+TGG | 0.696690 | 6_2:+30292451 | None:intergenic |
| GAGCATGCAGGCCGACACGG+TGG | 0.741937 | 6_2:+30292262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAAACTATGTATAT+TGG | - | chr6_2:30292788-30292807 | Msa0914990:intron | 10.0% |
| !!! | AATATACATAGTTTTTTTTT+TGG | + | chr6_2:30292819-30292838 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACTATGTATAT+TGG | - | chr6_2:30292818-30292837 | Msa0914990:intron | 10.0% |
| !!! | ATTAATTTTTACAAGAATTT+AGG | - | chr6_2:30292845-30292864 | Msa0914990:intron | 10.0% |
| !!! | TTAATTTTCTTTTCAATTTT+TGG | - | chr6_2:30293106-30293125 | Msa0914990:CDS | 10.0% |
| !!! | ACTTATTTTTTGTTATTTTA+TGG | - | chr6_2:30293588-30293607 | Msa0914990:intron | 10.0% |
| !! | ATATATTAAACTATGTATAT+TGG | - | chr6_2:30292788-30292807 | Msa0914990:intron | 10.0% |
| !!! | AATATACATAGTTTTTTTTT+TGG | + | chr6_2:30292819-30292838 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACTATGTATAT+TGG | - | chr6_2:30292818-30292837 | Msa0914990:intron | 10.0% |
| !!! | ATTAATTTTTACAAGAATTT+AGG | - | chr6_2:30292845-30292864 | Msa0914990:intron | 10.0% |
| !!! | TTAATTTTCTTTTCAATTTT+TGG | - | chr6_2:30293106-30293125 | Msa0914990:CDS | 10.0% |
| !!! | ACTTATTTTTTGTTATTTTA+TGG | - | chr6_2:30293588-30293607 | Msa0914990:intron | 10.0% |
| !!! | TTTTTGGTATATTAACAAAT+GGG | + | chr6_2:30292326-30292345 | None:intergenic | 15.0% |
| !!! | ATTTTTGGTATATTAACAAA+TGG | + | chr6_2:30292327-30292346 | None:intergenic | 15.0% |
| !!! | ACACAAAAAATGAAAATTTT+TGG | + | chr6_2:30292342-30292361 | None:intergenic | 15.0% |
| !!! | CAATTCAATTTTTTTTTTTG+AGG | + | chr6_2:30293290-30293309 | None:intergenic | 15.0% |
| !!! | TATGTTTAATTTGTTTTAGT+TGG | - | chr6_2:30293339-30293358 | Msa0914990:intron | 15.0% |
| !!! | TTTTTGGTATATTAACAAAT+GGG | + | chr6_2:30292326-30292345 | None:intergenic | 15.0% |
| !!! | ATTTTTGGTATATTAACAAA+TGG | + | chr6_2:30292327-30292346 | None:intergenic | 15.0% |
| !!! | ACACAAAAAATGAAAATTTT+TGG | + | chr6_2:30292342-30292361 | None:intergenic | 15.0% |
| !!! | CAATTCAATTTTTTTTTTTG+AGG | + | chr6_2:30293290-30293309 | None:intergenic | 15.0% |
| !!! | TATGTTTAATTTGTTTTAGT+TGG | - | chr6_2:30293339-30293358 | Msa0914990:intron | 15.0% |
| !! | TAATTCATCATGAAGAAAAA+AGG | - | chr6_2:30292445-30292464 | Msa0914990:CDS | 20.0% |
| !! | ATGTGTATCATGATATTATA+AGG | - | chr6_2:30292678-30292697 | Msa0914990:intron | 20.0% |
| !! | AAATTAAATGAAAATGTGAG+TGG | + | chr6_2:30293093-30293112 | None:intergenic | 20.0% |
| !! | CATTGTAACTTCTTTAAATA+TGG | + | chr6_2:30293148-30293167 | None:intergenic | 20.0% |
| !!! | ATATTGATTTTAACTTAAGC+TGG | - | chr6_2:30293184-30293203 | Msa0914990:CDS | 20.0% |
| !! | GTATTCAATTCATGTAAAAT+TGG | + | chr6_2:30293261-30293280 | None:intergenic | 20.0% |
| !!! | TAATTGTTTCTTTGATTTTG+TGG | + | chr6_2:30293409-30293428 | None:intergenic | 20.0% |
| !! | TAATTCATCATGAAGAAAAA+AGG | - | chr6_2:30292445-30292464 | Msa0914990:CDS | 20.0% |
| !! | ATGTGTATCATGATATTATA+AGG | - | chr6_2:30292678-30292697 | Msa0914990:intron | 20.0% |
| !! | AAATTAAATGAAAATGTGAG+TGG | + | chr6_2:30293093-30293112 | None:intergenic | 20.0% |
| !! | CATTGTAACTTCTTTAAATA+TGG | + | chr6_2:30293148-30293167 | None:intergenic | 20.0% |
| !!! | ATATTGATTTTAACTTAAGC+TGG | - | chr6_2:30293184-30293203 | Msa0914990:CDS | 20.0% |
| !! | GTATTCAATTCATGTAAAAT+TGG | + | chr6_2:30293261-30293280 | None:intergenic | 20.0% |
| !!! | TAATTGTTTCTTTGATTTTG+TGG | + | chr6_2:30293409-30293428 | None:intergenic | 20.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | - | chr6_2:30292242-30292261 | Msa0914990:CDS | 25.0% |
| ! | AAACAAGAAAGAGAAAAGAA+GGG | + | chr6_2:30292598-30292617 | None:intergenic | 25.0% |
| ! | AAAACAAGAAAGAGAAAAGA+AGG | + | chr6_2:30292599-30292618 | None:intergenic | 25.0% |
| ! | GTATCATGATATTATAAGGA+TGG | - | chr6_2:30292682-30292701 | Msa0914990:intron | 25.0% |
| !! | CTATTCAAGTAAGTGATTTT+TGG | - | chr6_2:30292735-30292754 | Msa0914990:intron | 25.0% |
| !!! | TTACCACAATTAATTTGTGT+TGG | - | chr6_2:30292899-30292918 | Msa0914990:intron | 25.0% |
| !!! | AATTTTTGGTGTGTAATGTT+TGG | - | chr6_2:30293120-30293139 | Msa0914990:CDS | 25.0% |
| ! | TACAATGATTTGATCATGTT+TGG | - | chr6_2:30293161-30293180 | Msa0914990:CDS | 25.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | - | chr6_2:30292242-30292261 | Msa0914990:CDS | 25.0% |
| ! | AAACAAGAAAGAGAAAAGAA+GGG | + | chr6_2:30292598-30292617 | None:intergenic | 25.0% |
| ! | AAAACAAGAAAGAGAAAAGA+AGG | + | chr6_2:30292599-30292618 | None:intergenic | 25.0% |
| ! | GTATCATGATATTATAAGGA+TGG | - | chr6_2:30292682-30292701 | Msa0914990:intron | 25.0% |
| !! | CTATTCAAGTAAGTGATTTT+TGG | - | chr6_2:30292735-30292754 | Msa0914990:intron | 25.0% |
| !!! | TTACCACAATTAATTTGTGT+TGG | - | chr6_2:30292899-30292918 | Msa0914990:intron | 25.0% |
| !!! | AATTTTTGGTGTGTAATGTT+TGG | - | chr6_2:30293120-30293139 | Msa0914990:CDS | 25.0% |
| ! | TACAATGATTTGATCATGTT+TGG | - | chr6_2:30293161-30293180 | Msa0914990:CDS | 25.0% |
| CACCAACAAGATACTAAAAT+AGG | + | chr6_2:30292247-30292266 | None:intergenic | 30.0% | |
| ACACCAACACAAATTAATTG+TGG | + | chr6_2:30292905-30292924 | None:intergenic | 30.0% | |
| !! | TGATTTTGTGGTGATGAAAA+TGG | + | chr6_2:30293397-30293416 | None:intergenic | 30.0% |
| ! | TTTATGGATGTGTTTTTCAC+AGG | - | chr6_2:30293604-30293623 | Msa0914990:intron | 30.0% |
| CACCAACAAGATACTAAAAT+AGG | + | chr6_2:30292247-30292266 | None:intergenic | 30.0% | |
| ACACCAACACAAATTAATTG+TGG | + | chr6_2:30292905-30292924 | None:intergenic | 30.0% | |
| !! | TGATTTTGTGGTGATGAAAA+TGG | + | chr6_2:30293397-30293416 | None:intergenic | 30.0% |
| ! | TTTATGGATGTGTTTTTCAC+AGG | - | chr6_2:30293604-30293623 | Msa0914990:intron | 30.0% |
| TTGAGAGAGAAAGAAGAAGA+CGG | + | chr6_2:30292561-30292580 | None:intergenic | 35.0% | |
| GAAAGAGAAAAGAAGGGTTA+AGG | + | chr6_2:30292592-30292611 | None:intergenic | 35.0% | |
| CTACAGTTCTACAGAACAAA+CGG | - | chr6_2:30292936-30292955 | Msa0914990:intron | 35.0% | |
| !! | GAGTAGCATTTCTTTGGAAT+TGG | + | chr6_2:30292990-30293009 | None:intergenic | 35.0% |
| TTGCTTGAGTAGCATTTCTT+TGG | + | chr6_2:30292996-30293015 | None:intergenic | 35.0% | |
| AGAGAGAGCAGAATTTGTAA+GGG | + | chr6_2:30293052-30293071 | None:intergenic | 35.0% | |
| ! | AACCAAATGTTTTCACCAAG+TGG | + | chr6_2:30293634-30293653 | None:intergenic | 35.0% |
| ! | AAAACATTTGGTTCACCATC+TGG | - | chr6_2:30293641-30293660 | Msa0914990:CDS | 35.0% |
| TGTAGTCCAGAATCAGATAA+TGG | + | chr6_2:30293695-30293714 | None:intergenic | 35.0% | |
| TCTGATTCTGGACTACATAA+CGG | - | chr6_2:30293698-30293717 | Msa0914990:CDS | 35.0% | |
| TTGAGAGAGAAAGAAGAAGA+CGG | + | chr6_2:30292561-30292580 | None:intergenic | 35.0% | |
| GAAAGAGAAAAGAAGGGTTA+AGG | + | chr6_2:30292592-30292611 | None:intergenic | 35.0% | |
| CTACAGTTCTACAGAACAAA+CGG | - | chr6_2:30292936-30292955 | Msa0914990:intron | 35.0% | |
| !! | GAGTAGCATTTCTTTGGAAT+TGG | + | chr6_2:30292990-30293009 | None:intergenic | 35.0% |
| TTGCTTGAGTAGCATTTCTT+TGG | + | chr6_2:30292996-30293015 | None:intergenic | 35.0% | |
| AGAGAGAGCAGAATTTGTAA+GGG | + | chr6_2:30293052-30293071 | None:intergenic | 35.0% | |
| ! | AACCAAATGTTTTCACCAAG+TGG | + | chr6_2:30293634-30293653 | None:intergenic | 35.0% |
| ! | AAAACATTTGGTTCACCATC+TGG | - | chr6_2:30293641-30293660 | Msa0914990:CDS | 35.0% |
| TGTAGTCCAGAATCAGATAA+TGG | + | chr6_2:30293695-30293714 | None:intergenic | 35.0% | |
| TCTGATTCTGGACTACATAA+CGG | - | chr6_2:30293698-30293717 | Msa0914990:CDS | 35.0% | |
| CAACGTGGAACAACAACATT+TGG | + | chr6_2:30292384-30292403 | None:intergenic | 40.0% | |
| ! | CAAATGTTGTTGTTCCACGT+TGG | - | chr6_2:30292382-30292401 | Msa0914990:CDS | 40.0% |
| GAGAGAGAGCAGAATTTGTA+AGG | + | chr6_2:30293053-30293072 | None:intergenic | 40.0% | |
| ! | AGCCACTTGGTGAAAACATT+TGG | - | chr6_2:30293629-30293648 | Msa0914990:CDS | 40.0% |
| ! | AGAATCAGATAATGGTGGCA+TGG | + | chr6_2:30293687-30293706 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | - | chr6_2:30293686-30293705 | Msa0914990:CDS | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | + | chr6_2:30293692-30293711 | None:intergenic | 40.0% |
| GTTGTCCGAAAGAAGAGAAT+CGG | - | chr6_2:30293839-30293858 | Msa0914990:intron | 40.0% | |
| AGTTTGATGAACAGGAGGAA+AGG | - | chr6_2:30293923-30293942 | Msa0914990:intron | 40.0% | |
| CAACGTGGAACAACAACATT+TGG | + | chr6_2:30292384-30292403 | None:intergenic | 40.0% | |
| ! | CAAATGTTGTTGTTCCACGT+TGG | - | chr6_2:30292382-30292401 | Msa0914990:CDS | 40.0% |
| GAGAGAGAGCAGAATTTGTA+AGG | + | chr6_2:30293053-30293072 | None:intergenic | 40.0% | |
| ! | AGCCACTTGGTGAAAACATT+TGG | - | chr6_2:30293629-30293648 | Msa0914990:CDS | 40.0% |
| ! | AGAATCAGATAATGGTGGCA+TGG | + | chr6_2:30293687-30293706 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | - | chr6_2:30293686-30293705 | Msa0914990:CDS | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | + | chr6_2:30293692-30293711 | None:intergenic | 40.0% |
| GTTGTCCGAAAGAAGAGAAT+CGG | - | chr6_2:30293839-30293858 | Msa0914990:intron | 40.0% | |
| AGTTTGATGAACAGGAGGAA+AGG | - | chr6_2:30293923-30293942 | Msa0914990:intron | 40.0% | |
| AGCATAACTTGAAGCCAACG+TGG | + | chr6_2:30292399-30292418 | None:intergenic | 45.0% | |
| ATTCTGCTCTCTCTCTTGCA+AGG | - | chr6_2:30293058-30293077 | Msa0914990:intron | 45.0% | |
| ! | TTTTTCACAGGTGAGCCACT+TGG | - | chr6_2:30293616-30293635 | Msa0914990:CDS | 45.0% |
| CACTCGAGTAAGTAACCAGA+TGG | + | chr6_2:30293659-30293678 | None:intergenic | 45.0% | |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | + | chr6_2:30293756-30293775 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | - | chr6_2:30293755-30293774 | Msa0914990:CDS | 45.0% | |
| AAACCGAACTTCATCCGGTT+CGG | - | chr6_2:30293760-30293779 | Msa0914990:CDS | 45.0% | |
| !! | TGACGCCGATTCTCTTCTTT+CGG | + | chr6_2:30293847-30293866 | None:intergenic | 45.0% |
| AGAATCGGCGTCATCACTTT+CGG | - | chr6_2:30293854-30293873 | Msa0914990:intron | 45.0% | |
| ! | CAATATAACGGGGCTCTATG+TGG | + | chr6_2:30293953-30293972 | None:intergenic | 45.0% |
| AGCATAACTTGAAGCCAACG+TGG | + | chr6_2:30292399-30292418 | None:intergenic | 45.0% | |
| ATTCTGCTCTCTCTCTTGCA+AGG | - | chr6_2:30293058-30293077 | Msa0914990:intron | 45.0% | |
| ! | TTTTTCACAGGTGAGCCACT+TGG | - | chr6_2:30293616-30293635 | Msa0914990:CDS | 45.0% |
| CACTCGAGTAAGTAACCAGA+TGG | + | chr6_2:30293659-30293678 | None:intergenic | 45.0% | |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | + | chr6_2:30293756-30293775 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | - | chr6_2:30293755-30293774 | Msa0914990:CDS | 45.0% | |
| AAACCGAACTTCATCCGGTT+CGG | - | chr6_2:30293760-30293779 | Msa0914990:CDS | 45.0% | |
| !! | TGACGCCGATTCTCTTCTTT+CGG | + | chr6_2:30293847-30293866 | None:intergenic | 45.0% |
| AGAATCGGCGTCATCACTTT+CGG | - | chr6_2:30293854-30293873 | Msa0914990:intron | 45.0% | |
| ! | CAATATAACGGGGCTCTATG+TGG | + | chr6_2:30293953-30293972 | None:intergenic | 45.0% |
| !! | ACAAAAAATAATATTAAAAT+GGG | + | chr6_2:30292287-30292306 | None:intergenic | 5.0% |
| !! | AACAAAAAATAATATTAAAA+TGG | + | chr6_2:30292288-30292307 | None:intergenic | 5.0% |
| !! | ACAAAAAATAATATTAAAAT+GGG | + | chr6_2:30292287-30292306 | None:intergenic | 5.0% |
| !! | AACAAAAAATAATATTAAAA+TGG | + | chr6_2:30292288-30292307 | None:intergenic | 5.0% |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | + | chr6_2:30292531-30292550 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | + | chr6_2:30292538-30292557 | None:intergenic | 50.0% | |
| GTAAGGGTCTTGCAGACTTC+TGG | + | chr6_2:30293036-30293055 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+TGG | - | chr6_2:30293718-30293737 | Msa0914990:CDS | 50.0% | |
| GATGGTTCGAGAACCAAGTC+AGG | + | chr6_2:30293734-30293753 | None:intergenic | 50.0% | |
| ! | GACTTGGTTCTCGAACCATC+CGG | - | chr6_2:30293734-30293753 | Msa0914990:CDS | 50.0% |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | + | chr6_2:30293752-30293771 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+GGG | - | chr6_2:30293761-30293780 | Msa0914990:CDS | 50.0% | |
| GTCTTTGTATCCACCCGAAC+CGG | + | chr6_2:30293777-30293796 | None:intergenic | 50.0% | |
| AGTAGTAGCGGTGCAAGCAA+GGG | + | chr6_2:30293816-30293835 | None:intergenic | 50.0% | |
| TCGGACAACCTCAGTAGTAG+CGG | + | chr6_2:30293828-30293847 | None:intergenic | 50.0% | |
| TCTCGGGGAGTTTGATGAAC+AGG | - | chr6_2:30293915-30293934 | Msa0914990:intron | 50.0% | |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | + | chr6_2:30292531-30292550 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | + | chr6_2:30292538-30292557 | None:intergenic | 50.0% | |
| GTAAGGGTCTTGCAGACTTC+TGG | + | chr6_2:30293036-30293055 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+TGG | - | chr6_2:30293718-30293737 | Msa0914990:CDS | 50.0% | |
| GATGGTTCGAGAACCAAGTC+AGG | + | chr6_2:30293734-30293753 | None:intergenic | 50.0% | |
| ! | GACTTGGTTCTCGAACCATC+CGG | - | chr6_2:30293734-30293753 | Msa0914990:CDS | 50.0% |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | + | chr6_2:30293752-30293771 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+GGG | - | chr6_2:30293761-30293780 | Msa0914990:CDS | 50.0% | |
| GTCTTTGTATCCACCCGAAC+CGG | + | chr6_2:30293777-30293796 | None:intergenic | 50.0% | |
| AGTAGTAGCGGTGCAAGCAA+GGG | + | chr6_2:30293816-30293835 | None:intergenic | 50.0% | |
| TCGGACAACCTCAGTAGTAG+CGG | + | chr6_2:30293828-30293847 | None:intergenic | 50.0% | |
| TCTCGGGGAGTTTGATGAAC+AGG | - | chr6_2:30293915-30293934 | Msa0914990:intron | 50.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | - | chr6_2:30292533-30292552 | Msa0914990:intron | 55.0% | |
| GTCTTGCAGACTTCTGGCAC+AGG | + | chr6_2:30293030-30293049 | None:intergenic | 55.0% | |
| CACCCGAACCGGATGAAGTT+CGG | + | chr6_2:30293766-30293785 | None:intergenic | 55.0% | |
| CAGTAGTAGCGGTGCAAGCA+AGG | + | chr6_2:30293817-30293836 | None:intergenic | 55.0% | |
| TGCTTGCACCGCTACTACTG+AGG | - | chr6_2:30293817-30293836 | Msa0914990:intron | 55.0% | |
| TCACTTTCGGACCACCGTGT+CGG | - | chr6_2:30293867-30293886 | Msa0914990:intron | 55.0% | |
| CGGGGAGTTTGATGAACAGG+AGG | - | chr6_2:30293918-30293937 | Msa0914990:intron | 55.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | - | chr6_2:30292533-30292552 | Msa0914990:intron | 55.0% | |
| GTCTTGCAGACTTCTGGCAC+AGG | + | chr6_2:30293030-30293049 | None:intergenic | 55.0% | |
| CACCCGAACCGGATGAAGTT+CGG | + | chr6_2:30293766-30293785 | None:intergenic | 55.0% | |
| CAGTAGTAGCGGTGCAAGCA+AGG | + | chr6_2:30293817-30293836 | None:intergenic | 55.0% | |
| TGCTTGCACCGCTACTACTG+AGG | - | chr6_2:30293817-30293836 | Msa0914990:intron | 55.0% | |
| TCACTTTCGGACCACCGTGT+CGG | - | chr6_2:30293867-30293886 | Msa0914990:intron | 55.0% | |
| CGGGGAGTTTGATGAACAGG+AGG | - | chr6_2:30293918-30293937 | Msa0914990:intron | 55.0% | |
| !! | CGAACTTCATCCGGTTCGGG+TGG | - | chr6_2:30293764-30293783 | Msa0914990:CDS | 60.0% |
| AGTAGCGGTGCAAGCAAGGG+CGG | + | chr6_2:30293813-30293832 | None:intergenic | 60.0% | |
| !! | CGAACTTCATCCGGTTCGGG+TGG | - | chr6_2:30293764-30293783 | Msa0914990:CDS | 60.0% |
| AGTAGCGGTGCAAGCAAGGG+CGG | + | chr6_2:30293813-30293832 | None:intergenic | 60.0% | |
| ! | CTCGCCTGTGGCGGAAGTCT+CGG | - | chr6_2:30293898-30293917 | Msa0914990:intron | 65.0% |
| ! | TCGCCTGTGGCGGAAGTCTC+GGG | - | chr6_2:30293899-30293918 | Msa0914990:intron | 65.0% |
| ! | CTCGCCTGTGGCGGAAGTCT+CGG | - | chr6_2:30293898-30293917 | Msa0914990:intron | 65.0% |
| ! | TCGCCTGTGGCGGAAGTCTC+GGG | - | chr6_2:30293899-30293918 | Msa0914990:intron | 65.0% |
| GAGCATGCAGGCCGACACGG+TGG | + | chr6_2:30293881-30293900 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | + | chr6_2:30293884-30293903 | None:intergenic | 70.0% | |
| TCGGCCTGCATGCTCGCCTG+TGG | - | chr6_2:30293886-30293905 | Msa0914990:intron | 70.0% | |
| GCCTGCATGCTCGCCTGTGG+CGG | - | chr6_2:30293889-30293908 | Msa0914990:intron | 70.0% | |
| TCCGCCACAGGCGAGCATGC+AGG | + | chr6_2:30293893-30293912 | None:intergenic | 70.0% | |
| ! | CGCCTGTGGCGGAAGTCTCG+GGG | - | chr6_2:30293900-30293919 | Msa0914990:intron | 70.0% |
| CTCCCCGAGACTTCCGCCAC+AGG | + | chr6_2:30293905-30293924 | None:intergenic | 70.0% | |
| GAGCATGCAGGCCGACACGG+TGG | + | chr6_2:30293881-30293900 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | + | chr6_2:30293884-30293903 | None:intergenic | 70.0% | |
| TCGGCCTGCATGCTCGCCTG+TGG | - | chr6_2:30293886-30293905 | Msa0914990:intron | 70.0% | |
| GCCTGCATGCTCGCCTGTGG+CGG | - | chr6_2:30293889-30293908 | Msa0914990:intron | 70.0% | |
| TCCGCCACAGGCGAGCATGC+AGG | + | chr6_2:30293893-30293912 | None:intergenic | 70.0% | |
| ! | CGCCTGTGGCGGAAGTCTCG+GGG | - | chr6_2:30293900-30293919 | Msa0914990:intron | 70.0% |
| CTCCCCGAGACTTCCGCCAC+AGG | + | chr6_2:30293905-30293924 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 30292189 | 30293973 | 30292189 | ID=Msa0914990;Name=Msa0914990 |
| chr6_2 | mRNA | 30292189 | 30293973 | 30292189 | ID=Msa0914990-mRNA-1;Parent=Msa0914990;Name=Msa0914990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.8|0.75|0.8|5|0|250 |
| chr6_2 | exon | 30293971 | 30293973 | 30293971 | ID=Msa0914990-mRNA-1:exon:5520;Parent=Msa0914990-mRNA-1 |
| chr6_2 | exon | 30293608 | 30293796 | 30293608 | ID=Msa0914990-mRNA-1:exon:5519;Parent=Msa0914990-mRNA-1 |
| chr6_2 | exon | 30293420 | 30293494 | 30293420 | ID=Msa0914990-mRNA-1:exon:5518;Parent=Msa0914990-mRNA-1 |
| chr6_2 | exon | 30293083 | 30293220 | 30293083 | ID=Msa0914990-mRNA-1:exon:5517;Parent=Msa0914990-mRNA-1 |
| chr6_2 | exon | 30292189 | 30292536 | 30292189 | ID=Msa0914990-mRNA-1:exon:5516;Parent=Msa0914990-mRNA-1 |
| chr6_2 | CDS | 30293971 | 30293973 | 30293971 | ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1 |
| chr6_2 | CDS | 30293608 | 30293796 | 30293608 | ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1 |
| chr6_2 | CDS | 30293420 | 30293494 | 30293420 | ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1 |
| chr6_2 | CDS | 30293083 | 30293220 | 30293083 | ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1 |
| chr6_2 | CDS | 30292189 | 30292536 | 30292189 | ID=Msa0914990-mRNA-1:cds;Parent=Msa0914990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
